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R rebuild against R 3.3.2 #4972
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mdehollander
and others
added some commits
Jun 2, 2017
johanneskoester
merged commit fd2ecba
into
master
Jun 15, 2017
sebastian-luna-valero
referenced
this pull request
in CGATOxford/cgat
Jun 19, 2017
Open
Conda installation broken #301
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r-ggally is on the blacklist but apparently it built on 3.3.2 successfully (https://anaconda.org/bioconda/r-ggally/files), am I missing something ? |
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@rvalieris can you remove it from the blacklist? |
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sure, I just wanted to double check :) |
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bgruening commentedJun 15, 2017
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edited by xguse
This PR has all changes that were necessary to rebuild all* R packages against R 3.3.2. Moreover, we migrated all packages from the r-channel to conda-forge (build against 3.2.2.).
This means we can drop the
r-channel completely from you build-infrastructure. Which is done here: bioconda/bioconda-utils#122Please note that if you want to run against R3.3.1 you still need the r-channel.
Additionally, this means we changed the channel priority to prefer conda-forge over defaults.
Overall, a large change and we want to make you aware of these and we hope it does not break too many packages. We do think it is worth the effort to drop the r-channel.
ping @bioconda/all
* a few packages are still on the sorted-r-blacklist and I would appreciate some help from R experts or OSX experts.