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FROM condaforge/linux-anvil
RUN sudo -n yum install -y openssh-clients
RUN mkdir -p /tmp/repo/bioconda_utils/
COPY ./bioconda_utils/bioconda_utils-requirements.txt /tmp/repo/bioconda_utils/
RUN export PATH="/opt/conda/bin:${PATH}" && \
conda config --add channels defaults && \
conda config --add channels bioconda && \
conda config --add channels conda-forge
RUN export PATH="/opt/conda/bin:${PATH}" && \
conda install --file /tmp/repo/bioconda_utils/bioconda_utils-requirements.txt && \
conda clean -y --all
COPY . /tmp/repo
RUN export PATH="/opt/conda/bin:${PATH}" && \
pip install /tmp/repo
ENTRYPOINT [ "/opt/conda/bin/tini", "--", "/tmp/repo/docker-entrypoint" ]