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Commits on Apr 2, 2014
  1. Merge pull request #50 from ElDeveloper/install-instructions

    Update installation instructions for virutal box
    antgonza committed Apr 2, 2014
  2. Update installation instructions for virutal box

    The installation instructions were updated to reflect the most recent
    changes in VirtualBox's GUI.
    ElDeveloper committed Apr 2, 2014
Commits on Aug 13, 2013
  1. Merge pull request #44 from antgonza/update_emperor

    Update emperor
    ElDeveloper committed Aug 13, 2013
Commits on Aug 5, 2013
  1. Removing tests

    antgonza committed Aug 5, 2013
  2. removing files

    antgonza committed Aug 5, 2013
Commits on Apr 18, 2013
  1. Merge pull request #41 from antgonza/add_study

    Add a new study by running two commands on the biom/mapping files
    ElDeveloper committed Apr 18, 2013
Commits on Apr 15, 2013
Commits on Apr 13, 2013
  1. Fixing test

    antgonza committed Apr 13, 2013
  2. Fixing comments

    antgonza committed Apr 13, 2013
Commits on Apr 10, 2013
  1. Fixing bug created by my mistake of erasing the map_sample_space.py l…

    …ibrary vs. the script and adding the missing text for help
    antgonza committed Apr 10, 2013
Commits on Apr 9, 2013
  1. remove map_sample_space.py

    antgonza committed Apr 9, 2013
Commits on Feb 17, 2013
  1. Merge pull request #29 from wdwvt1/compare_categories

    Compare categories
    antgonza committed Feb 17, 2013
Commits on Feb 15, 2013
  1. Merge pull request #38 from ElDeveloper/vm_updateswq

    Misc updates for the newest VM
    antgonza committed Feb 15, 2013
  2. Change the biom backend from CSMat to SparseMat

    The biom format uses CSMat as a default backend, E-vident sees  some
    performance benefit from using SparseMat, hence a biom configuration
    file was added to the project.
    
    The installation instructions had a dead link, this was also corrected.
    ElDeveloper committed Feb 15, 2013
Commits on Feb 6, 2013
  1. Merge pull request #34 from antgonza/fix_#33

    Fixing issue #33
    ElDeveloper committed Feb 6, 2013
  2. Fixing issue #33

    antgonza committed Feb 6, 2013
Commits on Jan 31, 2013
  1. Merge pull request #30 from antgonza/bushman_enterotypes_cafe

    Adding new study, PMID: 21885731
    
    -- Works fine on my computer.
    wdwvt1 committed Jan 31, 2013
  2. Modified the library code with a few more changes to reflect the fact…

    … that chosen_samples is passed as a list, not a list of lists as I had thought. Updated the documentation some more and added compare_treatments.psp. This file is run after you have initiated the session (i.e. by running evident on one of the datasets) by opening a new window and pointing it to http://127.0.0.1/~will/evident/www/compare_treatments.psp?category=BODY_SITE&iterations=10 where you replace 'will' with your username and the category with whichever category in the mapping file you wish to use. Iterations is currently not linked to anything and whats being written out is just a dummy, but its a start.
    wdwvt1 committed Jan 31, 2013
Commits on Jan 30, 2013
  1. Removed unnecessary imports.

    wdwvt1 committed Jan 30, 2013
  2. Changed permissions.

    wdwvt1 committed Jan 30, 2013
  3. Created new library code and new tests to compare distances between t…

    …reatments in a given category.
    wdwvt1 committed Jan 30, 2013
Commits on Jan 3, 2013
  1. Merge pull request #28 from antgonza/install_vm

    Adding instructions to donwload and install the Evident VM
    ElDeveloper committed Jan 3, 2013
  2. Solving issues after revision

    antgonza committed Jan 3, 2013
Commits on Jan 2, 2013
Commits on Jan 1, 2013
  1. Merge pull request #25 from ElDeveloper/alpha_sessions

    Integrated the use of session with alpha diversity
    antgonza committed Jan 1, 2013
Commits on Dec 31, 2012