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# q2-conduit
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# <img src="resources/q2-conduit_logo.png" alt="q2-conduit logo" width="400">
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q2-conduit is a plugin that connects Conduit results to QIIME 2, acting as a
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converter that extracts QIIME-formatted artifacts from Conduit outputs for use
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in downstream analyses.
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## Overview
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The Conduit software (developed by [Dr. Charles Bayne](https://github.com/baynec2) in the lab of [Dr. David Gonzalez](https://www.gonzalezlab.org/)) provides a comprehensive metaproteomics workflow that combines peptide/protein identification and quantitation via [DIA-NN](https://pubmed.ncbi.nlm.nih.gov/31768060/) with extensive protein annotation support, as well as data integration and GUI features. Protein quantitation and taxonomic identification outputs from Conduit can be imported into the [QIIME 2](https://qiime2.org/) software to enable instant integration with that platform's extensive analysis features. q2-conduit is a QIIME 2 plugin that enables this import step.
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The Conduit software (developed by [Charlie Bayne](https://github.com/baynec2)
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in the lab of [Dr. David Gonzalez](https://www.gonzalezlab.org/)) provides a
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comprehensive metaproteomics workflow that combines peptide/protein
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identification and quantitation via
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[DIA-NN](https://pubmed.ncbi.nlm.nih.gov/31768060/)
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with extensive protein annotation support, as well as data integration and
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GUI features designed specifically for metaproteomics.
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Protein quantitation and taxonomic identification outputs from Conduit can be
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imported into [QIIME 2](https://qiime2.org/), enabling seamless integration
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with the platform’s extensive microbiome analysis tools. q2-conduit is a QIIME 2
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plugin that enables this import step.
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## Installation
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resources/q2-conduit_logo.png

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