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updated to use default depth for compare_alpha_diversity.py

this is the second half of addressing #711 (where the first half was completed in #741)
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commit 858a361188474dc7203f7eb4b5d5d39ce5cad7c0 1 parent 050cff1
@gregcaporaso gregcaporaso authored
Showing with 1 addition and 1 deletion.
  1. +1 −1  qiime/workflow/core_diversity_analyses.py
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2  qiime/workflow/core_diversity_analyses.py
@@ -282,7 +282,7 @@ def run_core_diversity_analyses(
compare_alpha_cmd = \
'compare_alpha_diversity.py -i %s -m %s -c %s -o %s -n 999 %s' %\
(collated_alpha_diversity_fp, mapping_fp, category,
- sampling_depth, alpha_comparison_output_fp, params_str)
+ alpha_comparison_output_fp, params_str)
commands.append([('Compare alpha diversity (%s, %s)' %\
(category,alpha_metric),
compare_alpha_cmd)])
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