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Commits on Aug 16, 2016
  1. Merge pull request #2151 from iugrina/doc_fix

    improve doc for filter_fasta (--valid_states)
    gregcaporaso committed on GitHub Aug 16, 2016
Commits on Aug 10, 2016
  1. updates to install doc for clarity

    This address comments from @cuttlefishh in #2166
    gregcaporaso committed on GitHub Aug 10, 2016
Commits on Jul 29, 2016
  1. Merge pull request #2167 from shiffer1/patch-1

    Update join_paired_ends.py
    gregcaporaso committed on GitHub Jul 29, 2016
  2. Update join_paired_ends.py

    shiffer1 committed with shiffer1 Jul 27, 2016
Commits on Jul 22, 2016
  1. Merge pull request #2166 from gregcaporaso/conda-install

    DOC: updates install instructions to use conda
    gregcaporaso committed on GitHub Jul 22, 2016
  2. DOC: updates install instructions to use conda

    this was written in collaboration with @cuttlefishh.
    gregcaporaso committed Jul 22, 2016
  3. Merge pull request #2165 from biocore/revert-2162-luke-qiime

    Revert "New installation instructions using Conda"
    gregcaporaso committed on GitHub Jul 22, 2016
  4. Merge pull request #2162 from cuttlefishh/luke-qiime

    New installation instructions using Conda
    gregcaporaso committed on GitHub Jul 22, 2016
  5. changed wget to curl -sO

    cuttlefishh committed Jul 22, 2016
Commits on Jul 20, 2016
Commits on May 25, 2016
Commits on May 12, 2016
  1. Merge pull request #2148 from gblanchard4/fix-group_significance-docu…

    …mentation-typos
    
    Fix group significance documentation typos
    gregcaporaso committed May 12, 2016
Commits on May 11, 2016
  1. Fixed paramater to parameter

    gblanchard4 committed May 11, 2016
  2. fixed silenty to silently

    gblanchard4 committed May 11, 2016
  3. fixed cerstain to certain

    gblanchard4 committed May 11, 2016
Commits on May 3, 2016
  1. Merge pull request #2088 from walterst/msl_Oct52015_1971

    Modified multiple_split_libraries_fastq.py to filter target files, wi…
    gregcaporaso committed May 3, 2016
  2. Modified usage scripts to fix script test failures, added text for cl…

    …arity of usage
    William Anton Walters committed May 3, 2016
  3. Merge pull request #2044 from ElDeveloper/sl-docs

    DOC: Fix random forest installation command
    gregcaporaso committed May 3, 2016
  4. Merge pull request #2114 from colinbrislawn/patch-1

    Improve error message in parse.py. Closes #2113
    gregcaporaso committed May 3, 2016
Commits on May 2, 2016
  1. Merge pull request #2145 from jairideout/dep-version-cap

    MAINT/TST: dependency version cap; "fix" broken bootstrapped p-value test
    gregcaporaso committed May 2, 2016
Commits on Apr 29, 2016
  1. MAINT: cap matplotlib at 1.4.3

    Later versions are incompatible with capped numpy 1.9.2.
    jairideout committed Apr 29, 2016
  2. MAINT: cap third-party dependencies

    QIIME 1 is now in maintenance mode, so capping dependency versions that we don't control.
    jairideout committed Apr 29, 2016
  3. TST: fix failing bootstrapped p-value test

    Fixes #2078.
    jairideout committed Apr 29, 2016
  4. Merge pull request #2115 from ElDeveloper/different-taxa

    BUG: Change  taxa in compute_taxonomy_ratios.py
    gregcaporaso committed Apr 29, 2016
  5. Merge pull request #2143 from tacaswell/mnt_remove_pylab

    Mnt remove pylab imports in favor of `pyplot`
    gregcaporaso committed Apr 29, 2016
  6. Merge pull request #2144 from gregcaporaso/contributing-updates

    DOC: updates to point new devs toward QIIME 2
    jairideout committed Apr 29, 2016
Commits on Apr 28, 2016
  1. HACK: seems to be using global state for plotting

    These functions seem to be using the pyplot 'current axes' to pass which
    axes to plot to between functions.
    tacaswell committed Apr 28, 2016
  2. FIX: invalid syntax

    tacaswell committed Apr 28, 2016
  3. FIX: simplify make_legend

    closes #2117
    tacaswell committed Apr 28, 2016