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denoiser
parallel
pycogent_backports
support_files
workflow
__init__.py
add_alpha_to_mapping_file.py
add_qiime_labels.py
adjust_seq_orientation.py
align_seqs.py
alpha_diversity.py
assign_taxonomy.py
barcode.py
beta_diversity.py
beta_metrics.py
biplots.py
categorized_dist_scatterplot.py
check_id_map.py
clean_raxml_parsimony_tree.py
cluster_quality.py
collate_alpha.py
colors.py
compare_alpha_diversity.py
compare_categories.py
compare_distance_matrices.py
compare_taxa_summaries.py
compare_trajectories.py
compute_taxonomy_ratios.py
convert_fastaqual_fastq.py
core_microbiome.py
demultiplex_fasta.py
denoise_wrapper.py
detrend.py
differential_abundance.py
distance_matrix_from_mapping.py
estimate_observation_richness.py
exclude_seqs_by_blast.py
extract_barcodes.py
filter.py
filter_alignment.py
filter_otus_by_sample.py
format.py
golay.py
group.py
hamming.py
hierarchical_cluster.py
identify_chimeric_seqs.py
join_paired_ends.py
make_2d_plots.py
make_bipartite_network.py
make_bootstrapped_tree.py
make_distance_boxplots.py
make_fastq.py
make_library_id_lists.py
make_otu_heatmap.py
make_otu_network.py
make_otu_table.py
make_per_library_sff.py
make_phylogeny.py
make_rarefaction_plots.py
map_reads_to_reference.py
nmds.py
normalize_table.py
otu_significance.py
parse.py
pick_otus.py
pick_rep_set.py
plot_rank_abundance_graph.py
plot_semivariogram.py
plot_taxa_summary.py
principal_coordinates.py
process_sff.py
quality_scores_plot.py
rarefaction.py
relatedness_library.py
remote.py
shared_phylotypes.py
simsam.py
sort.py
split.py
split_libraries.py
split_libraries_fastq.py
split_libraries_lea_seq.py
stats.py
summarize_taxa.py
supervised_learning.py
test.py
transform_coordinate_matrices.py
tree_compare.py
trim_sff_primers.py
truncate_fasta_qual_files.py
truncate_reverse_primer.py
util.py
validate_demultiplexed_fasta.py