Latest commit 55b7530 May 3, 2016 @gregcaporaso gregcaporaso Merge pull request #2114 from colinbrislawn/patch-1
Improve error message in parse.py. Closes #2113
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denoiser REL: updated for 1.9.1-dev May 22, 2015
parallel REL: updated for 1.9.1-dev May 22, 2015
pycogent_backports REL: updated for 1.9.1-dev May 22, 2015
support_files REL: updated for 1.9.1-dev May 22, 2015
workflow ENH/DOC: Improve docs and pieces of code Aug 29, 2015
__init__.py REL: updated for 1.9.1-dev May 22, 2015
add_alpha_to_mapping_file.py REL: updated for 1.9.1-dev May 22, 2015
add_qiime_labels.py REL: updated for 1.9.1-dev May 22, 2015
adjust_seq_orientation.py REL: updated for 1.9.1-dev May 22, 2015
align_seqs.py REL: updated for 1.9.1-dev May 22, 2015
alpha_diversity.py REL: updated for 1.9.1-dev May 22, 2015
assign_taxonomy.py REL: updated for 1.9.1-dev May 22, 2015
barcode.py REL: updated for 1.9.1-dev May 22, 2015
beta_diversity.py REL: updated for 1.9.1-dev May 22, 2015
beta_metrics.py REL: updated for 1.9.1-dev May 22, 2015
biplots.py REL: updated for 1.9.1-dev May 22, 2015
categorized_dist_scatterplot.py REL: updated for 1.9.1-dev May 22, 2015
check_id_map.py REL: updated for 1.9.1-dev May 22, 2015
clean_raxml_parsimony_tree.py REL: updated for 1.9.1-dev May 22, 2015
cluster_quality.py REL: updated for 1.9.1-dev May 22, 2015
collate_alpha.py REL: updated for 1.9.1-dev May 22, 2015
colors.py REL: updated for 1.9.1-dev May 22, 2015
compare_alpha_diversity.py REL: updated for 1.9.1-dev May 22, 2015
compare_categories.py REL: updated for 1.9.1-dev May 22, 2015
compare_distance_matrices.py REL: updated for 1.9.1-dev May 22, 2015
compare_taxa_summaries.py REL: updated for 1.9.1-dev May 22, 2015
compare_trajectories.py REL: updated for 1.9.1-dev May 22, 2015
compute_taxonomy_ratios.py REL: updated for 1.9.1-dev May 22, 2015
convert_fastaqual_fastq.py REL: updated for 1.9.1-dev May 22, 2015
core_microbiome.py REL: updated for 1.9.1-dev May 22, 2015
demultiplex_fasta.py REL: updated for 1.9.1-dev May 22, 2015
denoise_wrapper.py REL: updated for 1.9.1-dev May 22, 2015
detrend.py REL: updated for 1.9.1-dev May 22, 2015
differential_abundance.py REL: updated for 1.9.1-dev May 22, 2015
distance_matrix_from_mapping.py REL: updated for 1.9.1-dev May 22, 2015
estimate_observation_richness.py REL: updated for 1.9.1-dev May 22, 2015
exclude_seqs_by_blast.py REL: updated for 1.9.1-dev May 22, 2015
extract_barcodes.py REL: updated for 1.9.1-dev May 22, 2015
filter.py REL: updated for 1.9.1-dev May 22, 2015
filter_alignment.py REL: updated for 1.9.1-dev May 22, 2015
filter_otus_by_sample.py REL: updated for 1.9.1-dev May 22, 2015
format.py REL: updated for 1.9.1-dev May 22, 2015
golay.py REL: updated for 1.9.1-dev May 22, 2015
group.py REL: updated for 1.9.1-dev May 22, 2015
hamming.py REL: updated for 1.9.1-dev May 22, 2015
hierarchical_cluster.py REL: updated for 1.9.1-dev May 22, 2015
identify_chimeric_seqs.py REL: updated for 1.9.1-dev May 22, 2015
join_paired_ends.py REL: updated for 1.9.1-dev May 22, 2015
make_2d_plots.py HACK: seems to be using global state for plotting Apr 28, 2016
make_bipartite_network.py REL: updated for 1.9.1-dev May 22, 2015
make_bootstrapped_tree.py REL: updated for 1.9.1-dev May 22, 2015
make_distance_boxplots.py REL: updated for 1.9.1-dev May 22, 2015
make_fastq.py REL: updated for 1.9.1-dev May 22, 2015
make_library_id_lists.py REL: updated for 1.9.1-dev May 22, 2015
make_otu_heatmap.py REL: updated for 1.9.1-dev May 22, 2015
make_otu_network.py REL: updated for 1.9.1-dev May 22, 2015
make_otu_table.py REL: updated for 1.9.1-dev May 22, 2015
make_per_library_sff.py REL: updated for 1.9.1-dev May 22, 2015
make_phylogeny.py REL: updated for 1.9.1-dev May 22, 2015
make_rarefaction_plots.py MNT: use pyplot instead of pylab for imports Apr 26, 2016
map_reads_to_reference.py REL: updated for 1.9.1-dev May 22, 2015
nmds.py REL: updated for 1.9.1-dev May 22, 2015
normalize_table.py REL: updated for 1.9.1-dev May 22, 2015
otu_significance.py REL: updated for 1.9.1-dev May 22, 2015
parse.py Improve error message in parse.py. Closes #2113 Dec 3, 2015
pick_otus.py REL: updated for 1.9.1-dev May 22, 2015
pick_rep_set.py REL: updated for 1.9.1-dev May 22, 2015
plot_rank_abundance_graph.py REL: updated for 1.9.1-dev May 22, 2015
plot_semivariogram.py REL: updated for 1.9.1-dev May 22, 2015
plot_taxa_summary.py FIX: simplify make_legend Apr 28, 2016
principal_coordinates.py REL: updated for 1.9.1-dev May 22, 2015
process_sff.py REL: updated for 1.9.1-dev May 22, 2015
quality_scores_plot.py MNT: use pyplot instead of pylab for imports Apr 26, 2016
rarefaction.py REL: updated for 1.9.1-dev May 22, 2015
relatedness_library.py REL: updated for 1.9.1-dev May 22, 2015
remote.py REL: updated for 1.9.1-dev May 22, 2015
shared_phylotypes.py REL: updated for 1.9.1-dev May 22, 2015
simsam.py REL: updated for 1.9.1-dev May 22, 2015
sort.py REL: updated for 1.9.1-dev May 22, 2015
split.py REL: updated for 1.9.1-dev May 22, 2015
split_libraries.py Update split_libraries.py Jun 23, 2015
split_libraries_fastq.py REL: updated for 1.9.1-dev May 22, 2015
split_libraries_lea_seq.py REL: updated for 1.9.1-dev May 22, 2015
stats.py REL: updated for 1.9.1-dev May 22, 2015
summarize_taxa.py REL: updated for 1.9.1-dev May 22, 2015
supervised_learning.py REL: updated for 1.9.1-dev May 22, 2015
test.py REL: updated for 1.9.1-dev May 22, 2015
transform_coordinate_matrices.py REL: updated for 1.9.1-dev May 22, 2015
tree_compare.py REL: updated for 1.9.1-dev May 22, 2015
trim_sff_primers.py REL: updated for 1.9.1-dev May 22, 2015
truncate_fasta_qual_files.py REL: updated for 1.9.1-dev May 22, 2015
truncate_reverse_primer.py REL: updated for 1.9.1-dev May 22, 2015
util.py REL: updated for 1.9.1-dev May 22, 2015
validate_demultiplexed_fasta.py REL: updated for 1.9.1-dev May 22, 2015