@ekopylova ekopylova released this Feb 1, 2016 · 303 commits to master since this release

Assets 2

Bug fixes and feature updates including,

  1. fixed issue #70 (-m parameter for sortmerna not working for values greater than 4096); problem was related to large file support (-D_FILE_OFFSET_BITS=64 flag added to compilation)
  2. fixed issue #72 that caused incorrect CIGAR string when reference length < read length and based on the LCS, read hangs off end reference (alignment length should be computed based on this setup)
  3. fixed issue #48 that failed to check all possible temporary directories for writing tmp files
  4. SILVA associated taxonomy string to representative databases added
  5. modified option --blast INT to --blast STRING to support more fields in BLAST-like tabular output (ex. --blast '1 cigar qstrand')

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