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[FEAT]: GraphQL schema generator for BioCypher

good first issueGood for newcomersGood for newcomers

workshopIssue flagged as potential workshop materialIssue flagged as potential workshop material

Status: Open.

#500 In biocypher/biocypher;

· carissableker opened on Apr 15, 2026

[FEAT]: Parquet output for neo4j offline mode

Status: Open.

#492 In biocypher/biocypher;

· kpto opened on Mar 27, 2026

[BUG]: BioPathNet backend not finding node label

bugSomething isn't workingSomething isn't working

Status: Open.

Bug

#489 In biocypher/biocypher;

· jdreo opened on Mar 18, 2026

[DOC]: Tabular Format

Status: Open.

#471 In biocypher/biocypher;

· hdraisma opened on Dec 4, 2025

Error: No ontology type defined for multiple nodes (e.g., gene: hgnc.symbol:PTGES3) in BioCypher

Status: Open.

#461 In biocypher/biocypher;

· K-Neha245 opened on Aug 12, 2025

Refactor the taxonomy management to store IRI instead of labels

architectureRelated to the architectureRelated to the architecture

enhancementNew feature or requestNew feature or request

Status: Open.

Feature

#456 In biocypher/biocypher;

· jdreo opened on Jul 22, 2025

Add conversion methods for common graph representations

Status: Open.

#445 In biocypher/biocypher;

· vd-dragan21 opened on May 13, 2025

[BUG]: installing biocypher with Poetry -> error: The Poetry configuration is invalid: - project must contain ['name'] properties

bugSomething isn't workingSomething isn't working

Status: Open.

#439 In biocypher/biocypher;

· flalix opened on Apr 21, 2025

[FEAT]: Harmonise re-labelling: edges should also be subject to the synonym process

blockingShould be prioritised as it block progress on something elseShould be prioritised as it block progress on something else

good first issueGood for newcomersGood for newcomers

workshopIssue flagged as potential workshop materialIssue flagged as potential workshop material

Status: Open.

Feature

#435 In biocypher/biocypher;

· slobentanzer opened on Apr 14, 2025

Refactor: RDF/OWL (separate from CSV writer)

Status: Open.

#424 In biocypher/biocypher;

· slobentanzer opened on Mar 4, 2025

Monitor configuration for spelling mistakes or automatically prevent them

enhancementNew feature or requestNew feature or request

Status: Open.

Feature

#421 In biocypher/biocypher;

· slobentanzer opened on Feb 25, 2025

·  

Improve user-friendliness

Ad-hoc generation of ontologies as a service

Status: Open.

Feature

#411 In biocypher/biocypher;

· slobentanzer opened on Feb 5, 2025

·  

Improve user-friendliness