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Issues list

[BUG]: installing biocypher with Poetry -> error: The Poetry configuration is invalid: - project must contain ['name'] properties bug Something isn't working
#439 opened Apr 21, 2025 by flalix
1 task done
[FEAT]: Move separate_entity_types to ImMemoryKG
#438 opened Apr 16, 2025 by vd-dragan21
1 task done
@vd-dragan21
In memory KG -> AnnData transformation
#437 opened Apr 16, 2025 by vd-dragan21
@vd-dragan21
1
[FEAT]: Harmonise re-labelling: edges should also be subject to the synonym process
#435 opened Apr 14, 2025 by slobentanzer
1 task done
[BUG]: Filename too long Error in case of URL with multiple query parameters bug Something isn't working
#433 opened Apr 1, 2025 by vd-dragan21
1 task done
Refactor: RDF/OWL (separate from CSV writer)
#424 opened Mar 4, 2025 by slobentanzer
Monitor configuration for spelling mistakes or automatically prevent them enhancement New feature or request
#421 opened Feb 25, 2025 by slobentanzer Improve user-friendliness
Ad-hoc generation of ontologies as a service
#411 opened Feb 5, 2025 by slobentanzer Improve user-friendliness
Add option to load resource download definition from config enhancement New feature or request
#408 opened Jan 30, 2025 by slobentanzer Improve user-friendliness
1
Add system test for operating system handling of characters (newline problems, quote escapes)
#406 opened Jan 28, 2025 by slobentanzer
Upgrade CI components to Python 3.11 default
#404 opened Jan 16, 2025 by slobentanzer
Umbrella package to unify access to raw biocypher adapters, ontoweaver adapters, and pipeline functions
#400 opened Jan 10, 2025 by slobentanzer BioCypher `pipeline`
Upgrade documentation
#397 opened Nov 29, 2024 by slobentanzer
Developer docs: Ruff process including VSCode configuration
#396 opened Nov 27, 2024 by slobentanzer Improve user-friendliness
Add merge_nodes param to the configuration example of ontology hybridisation
#394 opened Nov 15, 2024 by slobentanzer
Docker compose on Windows: paths / characters failure
#393 opened Nov 14, 2024 by slobentanzer
2
Add volume purge to the docker build script
#392 opened Nov 14, 2024 by slobentanzer
Update docstring of BioCypherEdge class
#391 opened Nov 12, 2024 by slobentanzer
Rename preferred_id to namespace
#389 opened Oct 31, 2024 by slobentanzer
DFG project 528753569
#386 opened Oct 30, 2024 by slobentanzer
Open Targets project OTAR3088
#385 opened Oct 30, 2024 by slobentanzer
Create central adapters repository to collect external adapters and adapter templates for specific formats
#384 opened Oct 30, 2024 by slobentanzer Reusability of adapters
Remove Python shebang and copyright comments from the top of modules good first issue Good for newcomers
#383 opened Oct 23, 2024 by slobentanzer Software engineering best practices
Cache the ontology files
#381 opened Oct 23, 2024 by slobentanzer
Adhere to SPEC 0
#380 opened Oct 16, 2024 by slobentanzer Software engineering best practices
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