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#!/usr/bin/env cwl-runner
cwlVersion: v1.0
class: CommandLineTool
baseCommand:
- scwrl.py
inputs:
system:
type: string
inputBinding:
position: 1
default: "linux"
step:
type: string
inputBinding:
position: 2
default: "scwrl"
properties_file:
type: File
inputBinding:
position: 3
default:
class: File
location: test/conf_1ps.yaml
scw_input_pdb_path:
type: File
inputBinding:
position: 4
scw_output_pdb_path:
type: string
inputBinding:
position: 5
default: "mutated.pdb"
outputs:
scw_output_pdb_file:
type: File
outputBinding:
glob: $(inputs.scw_output_pdb_path)
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