A toolkit for performing set operations - union, intersection and complement - on k-mer lists.
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README.FastGT.md README.FastGT.md Sep 22, 2017
README.GenomeTester4.md Formatting README Sep 22, 2017
README.md Added README.FastGT.txt Sep 22, 2017

README.md

GenomeTester4

A toolkit for performing set operations - union, intersection and complement - on k-mer lists.
Copyright (C) University of Tartu 2015-2016.
Please cite: Kaplinski L, Lepamets M, Remm M. (2015). GenomeTester4: a toolkit for performing basic set operations – union, intersection and complement on k-mer lists. GigaScience, 4:58

Building GenomeTester4 binaries:
Change into subdirectory 'src' and type:

make clean
make

FastGT

An alignment-free genotype caller.
Copyright (C) University of Tartu 2015-2017
Please cite: Pajuste F-D, Kalpinski L, Möls M, Puurand T, Lepamets M, Remm M. (2017). FastGT: an alignment-free method for calling common SNVs directly from raw sequencing reads. Scientific Reports, 7:2537

FastGT is implemented as a sub-project of GenomeTester4, sharing some source files.
Source files are inside the GenomeTester4 distribution.
FastGT has two binaries - gmer_counter and gmer_caller.

Building FastGT binaries:
Change into subdirectory 'src' and type:

make gmer_counter
make gmer_caller