From 3386b5a68f9f5c8badc5ff53512bcd3330d75e9b Mon Sep 17 00:00:00 2001 From: bioinfo-ut Date: Fri, 22 Sep 2017 16:27:16 +0300 Subject: [PATCH] Formatting README --- README.FastGT.md | 7 ++++--- README.GenomeTester4.md | 8 +++++--- 2 files changed, 9 insertions(+), 6 deletions(-) diff --git a/README.FastGT.md b/README.FastGT.md index 6d1993a..785f2f1 100644 --- a/README.FastGT.md +++ b/README.FastGT.md @@ -1,5 +1,6 @@ -# FastGT genotype caller +# FastGT genotype caller package Copyright (C) University of Tartu 2015-2017 +Please cite: Pajuste F-D, Kalpinski L, Möls M, Puurand T, Lepamets M, Remm M. (2017). FastGT: an alignment-free method for calling common SNVs directly from raw sequencing reads. Scientific Reports, 7:2537. FastGT is a fast and accurate genotype caller from sequencing data. It uses Empirical Bayes classifier for calling genotypes from the counts of polymorphism-specific k-mers. @@ -7,10 +8,10 @@ FastGT can detect both canonical (diploid for autosomes and female X, haploid fo non-canonical (0-4 alleles) genotypes. * Binaries -FastGT has two binaries - gmer_counter and gmer_caller. Pre-compiled binaries are in directory 'bin'. +FastGT has two binaries: gmer_counter and gmer_caller. Pre-compiled binaries are in directory 'bin'. * Compilation -Change int src subdirectory and type: +Change into subdirectory 'src' and type: ``` make gmer_counter make gmer_caller diff --git a/README.GenomeTester4.md b/README.GenomeTester4.md index 7df97a2..4daf4cd 100644 --- a/README.GenomeTester4.md +++ b/README.GenomeTester4.md @@ -1,5 +1,7 @@ # GenomeTester4 package - +Copyright (C) University of Tartu 2015-2017 +Please cite: Kaplinski L, Lepamets M, Remm M. (2015). GenomeTester4: a toolkit for performing basic set operations – union, intersection and complement on k-mer lists. GigaScience, 4:58. + GenomeTester4 is a toolkit for creating and manipulating k-mer lists. It contains 3 programs: glistmaker, glistcompare and glistquery. It is developed by Department of Bioinformatics, University of Tartu and @@ -64,9 +66,9 @@ frequencies in the first list. GenomeTester4 is written in standard C. The only external dependency should be pthreads library that is standard in all Linux systems. -Binaries compiled with full optimization are included in directory "bin". +Binaries compiled with full optimization are included in directory 'bin'. If you for whatever reason have to compile these manually, just enter into -src subdirectory and type: +subdirectory 'src' and type: ``` make clean make