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Dump final HBV, paths and GFAs consistently #15

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bjclavijo opened this issue Nov 26, 2016 · 2 comments
Open

Dump final HBV, paths and GFAs consistently #15

bjclavijo opened this issue Nov 26, 2016 · 2 comments
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@ljyanesm
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w2rap-contigger v1.0

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@bjclavijo
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All needs to check out with the fasta representation.
@bjclavijo bjclavijo added this to the w2rap-contigger v1.0 milestone Nov 26, 2016
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On the appropriate GFAs, represent gaps with empty sequences, as in SDG.

@bjclavijo bjclavijo assigned ljyanesm and unassigned bjclavijo and jonwright99 Aug 7, 2019
@bjclavijo bjclavijo added the WIP label Aug 7, 2019
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ljyanesm commented Nov 6, 2019

Sequences are now written in lexicographically canonical orientations (compatible with SDG). Gaps for empty sequences are not yet represented in the GFA output.

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