@yunfeiguo yunfeiguo released this Mar 28, 2018 · 21 commits to master since this release

Assets 3
  • now use Real Time Genomics vcfeval for more sophisticated variant comparison where VarSim's builtin comparison fails. Try compare_vcf.py --help
  • added cutoff for SVLEN for differentiating small and large variants.
  • fix for restricted DGV sampling, dbSNP and more.

@yunfeiguo yunfeiguo released this Jul 7, 2017 · 142 commits to master since this release

Assets 3
  • bug fixes for quickstart.sh, varsim.py, varsim_somatic.py and randvcfgenerator
  • support IMPRECISE length SV in vcfcompare
Pre-release

@yunfeiguo yunfeiguo released this Jun 13, 2017 · 162 commits to master since this release

Assets 3
  • Support for multi-sample validation and simulation
  • minor bug fixes (thanks to @hh1985)
Pre-release

@yunfeiguo yunfeiguo released this Jun 12, 2017 · 166 commits to master since this release

Assets 2
  • now supports multi-sample simulation and validation!
  • bug fixes
Jun 12, 2017

list

Merge pull request #126 from yunfeiguo/v0.7.10
v0.7.10

@yunfeiguo yunfeiguo released this May 9, 2017 · 232 commits to master since this release

Assets 3
  • bug fix for SAMCompare (empty line in read map file)
  • added option for selecting samples when building restricted ref
  • fixed an issue associated with genomic coordinate liftover

@yunfeiguo yunfeiguo released this Apr 11, 2017 · 250 commits to master since this release

Assets 3
  • bug fixes
  • add histogram for distance-based metrics

@yunfeiguo yunfeiguo released this Mar 4, 2017 · 259 commits to master since this release

Assets 3
  • minor bug fix for quickstart.sh

@yunfeiguo yunfeiguo released this Feb 27, 2017 · 262 commits to master since this release

Assets 3
  • added distance-based metrics for VCF comparison in logging
  • minor fix for example