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Commits on May 9, 2017
  1. Add std includes

    gmiclotte committed May 9, 2017
  2. Fix settings parser bug

    gmiclotte committed May 9, 2017
Commits on Apr 20, 2016
  1. Merge pull request #15 from jfostier/cmake

    gmiclotte
    gmiclotte committed Apr 20, 2016
    Allow changing of maxkmerlength from cmake command line
  2. Allow easy changing of maxkmerlength from cmake command line

    gmiclotte
    gmiclotte committed Apr 20, 2016
    For example, in brownie/build:
    cmake -DMAXKMERLENGTH=75 ..
Commits on Feb 23, 2016
  1. Merge pull request #12 from jfostier/stage3refactor

    jfostier committed Feb 23, 2016
    Cosmetic changes to Brownie that should be merged into master ASAP
  2. Merge branch 'stage3refactor' of https://github.com/jfostier/brownie

    jfostier committed Feb 23, 2016
    …into stage3refactor
  3. Nicer DEBUG quality report

    jfostier committed Feb 23, 2016
  4. Merge pull request #11 from jfostier/commands

    jfostier committed Feb 23, 2016
    Extra commands options in main command line
  5. merge with master

    mahdiheydari committed Feb 23, 2016
Commits on Feb 19, 2016
Commits on Feb 18, 2016
  1. Additional cleanup.

    jfostier committed Feb 18, 2016
  2. add commands in seetings

    maheydari committed Feb 18, 2016
Commits on Feb 16, 2016
  1. Fixed spelling mistake

    jfostier committed Feb 16, 2016
  2. Merge pull request #8 from jfostier/ErrorCorrectionSta

    jfostier committed Feb 16, 2016
    Output read error correction statistics
  3. Merge pull request #9 from jfostier/slink_bug

    jfostier committed Feb 16, 2016
    Fix suffixlink bug in sparseSA and activate suffixlinks
  4. Use suffixlinks and kmertable for MEM-finding

    Giles Miclotte
    Giles Miclotte committed Feb 16, 2016
  5. Fix bug in essa when using suffix links

    Giles Miclotte
    Giles Miclotte committed Feb 16, 2016
  6. Fix naming bugs in settings.cpp

    Giles Miclotte
    Giles Miclotte committed Feb 16, 2016
  7. Add essaMEM kmertable support

    Giles Miclotte
    Giles Miclotte committed Feb 16, 2016
    Fixes indentation in sparseSA.*
  8. Merge pull request #6 from jfostier/libraryRefactor

    jfostier committed Feb 16, 2016
    Library refactor. Merging as remaining performance issues are likely related to stage 5.