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Commits on May 20, 2015
  1. @josemduarte

    Merge branch 'minor'

    josemduarte authored
  2. @josemduarte
  3. @josemduarte
Commits on May 13, 2015
  1. @josemduarte

    Merge branch 'minor'

    josemduarte authored
  2. @josemduarte

    Adding isHomomeric

    josemduarte authored
Commits on Apr 28, 2015
  1. @sbliven

    Run development/addlicense.sh

    sbliven authored
  2. @sbliven
  3. @sbliven

    Run development/addlicense.sh

    sbliven authored
  4. @sbliven
  5. @sbliven

    Run development/addlicense.sh

    sbliven authored
  6. @sbliven

    Add addlicense.sh script

    sbliven authored
Commits on Apr 22, 2015
  1. @andreasprlic

    Merge branch 'minor'

    andreasprlic authored
    * minor:
      update to latest version of dependencies
  2. @andreasprlic
  3. @andreasprlic

    fix #273 - the details field in _struct_ncs_oper is not mandatory and…

    andreasprlic authored
    … is missing in PDB ID 4X2S
  4. @andreasprlic

    Merge branch 'minor'

    andreasprlic authored
    * minor:
      adding a demo for how to show bio assembly
      fix #273 - the details field in _struct_ncs_oper is not mandatory and is missing in PDB ID 4X2S
      Fix bug with missing information
  5. @andreasprlic
  6. @andreasprlic

    fix #273 - the details field in _struct_ncs_oper is not mandatory and…

    andreasprlic authored
    … is missing in PDB ID 4X2S
Commits on Apr 17, 2015
  1. @lafita

    Merge branch 'patch' into minor

    lafita authored
  2. @josemduarte

    Merge branch 'minor'

    josemduarte authored
  3. @josemduarte
  4. @josemduarte
  5. @josemduarte
  6. @josemduarte
  7. @lafita

    Fix bug with missing information

    lafita authored
    Updating the superposition gave an error if the Ca information was not
    in afpChain, but the atom arrays are provided so the information is
    available.
Commits on Apr 15, 2015
  1. @sbliven
  2. @sbliven
  3. @sbliven

    Merge pull request #272 from sbliven/minor

    sbliven authored
    Misc updates for structure package
  4. @sbliven

    Adding long-running ECOD test. Must be run manually.

    sbliven authored
    Also moves EcodInstallationTest to the right package
  5. @sbliven

    Allow single-residue ranges

    sbliven authored
    e.g. "A:1" rather than "A:1-1"
  6. @sbliven

    Updated PolymerType and ResidueType for mmCIF 4.052

    sbliven authored
    Also fix AtomPositionMap to avoid NullPointers upon encounters with
    unknown types.
  7. @sbliven

    Be more flexible with incorrect structure ranges

    sbliven authored
    Trim ranges to the set of available residues, rather
    than throwing an error.
    
    Trimming occurs in StructureTools.getSubRanges and when parsing
    ResidueRangeAndLength, but not when parsing a ResidueRange.
Commits on Apr 14, 2015
  1. @lafita

    Merge pull request #271 from lafita/patch

    lafita authored
    Undo changes in the StructureAlignment colors
Commits on Apr 13, 2015
  1. @sbliven

    Changing nucleotide structural comparisons to use Phosphate atom

    sbliven authored
    Low-res structures are often modelled with phosphates.
Commits on Apr 10, 2015
  1. @lafita

    Removed AFPChain blockColors variable

    lafita authored
    Now the color control is exclusively for the symmetry project, the
    biojava GUI for structure alignment is returned to its original state.
Commits on Apr 8, 2015
  1. @lafita

    Permission changes

    lafita authored
    The permission of some member variables and methods have been changed in
    order to extend some classes to the symmetry project.
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