Bioconvert is a collaborative project to facilitate the interconversion of life science data from one format to another.
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README.rst

Bioconvert

Bioconvert is a project to facilitate the interconversion of life science data from one format to another.

https://secure.travis-ci.org/biokit/bioconvert.png https://coveralls.io/repos/github/biokit/bioconvert/badge.svg?branch=master Documentation Status
note:Bioconvert is tested with Travis for the following Python version: 3.5 and 3.6. Python 2 won't be provided.
contributions:Want to add a convertor ? Please join https://github.com/biokit/bioconvert/issues/1
issues:Please use https://github.com/biokit/bioconvert/issues

Installation

In order to install bioconvert, you can use pip:

pip install bioconvert

We also provide releases on bioconda (http://bioconda.github.io/):

conda install bioconvert

and Singularity container are available. See http://bioconvert.readthedocs.io/en/master/user_guide.html#installation for details.

Usage

bioconvert input.fastq output.fasta
bioconvert input.fq output.fasta
bioconvert input.mybam output.bed --input-format bam
bioconvert --formats
bioconvert --help

Available Converters

https://raw.githubusercontent.com/biokit/bioconvert/master/doc/conversion.png