MONROE Analysis

A Python 3 utility library for querying, analyzing, and visualizing MONROE data.

Installation

Run the following command line in the Python 3 environment of choice:

pip install git+https://github.com/biolab/monroe-anal

As the project API is as of yet considered unstable, we recommend installing in development mode:

git clone https://github.com/biolab/monroe-anal
cd monroe-anal
pip install -e .

# Run tests to confirm the package is installed correctly
python setup.py test

Then issue git pull within monroe-anal directory every now and then. The alternative is to re-run above pip install git+... command whenever updating is desired.

Usage

For help on how to query data, see the relevant Jupyter notebook. In general, see Jupyter notebooks in the notebooks directory for usage examples.