Orange3 Single Cell

The Single Cell add-on for Orange3 adds functionality for analysis of single cell data.

Installation

To install the add-on, run

pip install .

To register this add-on with Orange, but keep the code in the development directory (do not copy it to Python's site-packages directory), run

pip install -e .

Documentation / widget help can be built by running

make html htmlhelp

from the doc directory.

After the installation, the widget from this add-on is registered with Orange. To run Orange from the terminal, use

python -m Orange.canvas

The new widget appears in the toolbox bar under the section Single Cell.

Name	Latest commit message	Commit time
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.github
.travis	requirements: bump Orange3 and Orange3-bioinformatics version	Dec 10, 2018
doc
installer	installer/windows: update conda-spec file	Sep 20, 2018
orangecontrib
.coveragerc	setup: add coverage command	Nov 21, 2017
.gitignore	setup: add coverage command	Nov 21, 2017
.travis.yml	travis: use miniconda, code coverage report	Oct 12, 2018
CHANGELOG.md	Update CHANGELOG.md	Aug 6, 2018
LICENSE	Update package	Jul 19, 2017
MANIFEST.in
README.md	Updates (icons, readme, renaming)	Sep 8, 2017
codecov.yml	travis: use miniconda, code coverage report	Oct 12, 2018
conda_environment.yml	requirements: bump Orange3 and Orange3-bioinformatics version	Dec 10, 2018
requirements.txt	requirements: bump Orange3 and Orange3-bioinformatics version	Dec 10, 2018
setup.py	Release 0.9.1	Feb 11, 2019