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@pjotrp
pjotrp committed Dec 29, 2009
1 parent 958cabf commit 01bf7ad
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2 changes: 1 addition & 1 deletion src/clibs/rqtl
Submodule rqtl updated 68 files
+8 −0 .gitignore
+11 −5 INDEX
+15 −9 R/mqmaugment.R
+13 −7 R/mqmbootstrap.R
+24 −3 R/mqmcofactors.R
+86 −55 R/mqmplots.R
+105 −99 R/mqmscan.R
+4 −4 R/mqmscanall.R
+1 −1 R/mqmsnow.R
+33 −3 R/mqmutil.R
+8 −7 contrib/bin/mqmmain.cpp
+245 −245 contrib/bin/rtest/regression/mqm_listeria1.rnew
+245 −245 contrib/bin/rtest/regression/mqm_listeria1.rtest
+1 −1 contrib/bin/rtest/test_mqm_listeria1.R
+0 −12 contrib/bin/test/regression/t11out-test0.txt
+0 −12 contrib/bin/test/regression/t11out-test0.txt.rnew
+0 −12 contrib/bin/test/regression/t11out.txt
+0 −12 contrib/bin/test/regression/t11out.txt.rnew
+0 −12 contrib/bin/test/regression/t12out.txt
+0 −12 contrib/bin/test/regression/t12out.txt.rnew
+0 −12 contrib/bin/test/regression/t13out.txt
+0 −12 contrib/bin/test/regression/t13out.txt.rnew
+0 −12 contrib/bin/test/regression/t21out.txt
+0 −12 contrib/bin/test/regression/t21out.txt.rnew
+0 −12 contrib/bin/test/regression/t22out.txt
+0 −12 contrib/bin/test/regression/t22out.txt.rnew
+0 −12 contrib/bin/test/regression/t23out.txt
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+0 −12 contrib/bin/test/regression/t24out.txt
+0 −12 contrib/bin/test/regression/t24out.txt.rnew
+2,021 −2,033 contrib/bin/test/regression/t25out.txt
+0 −12 contrib/bin/test/regression/t25out.txt.rnew
+0 −12 contrib/bin/test/regression/t31out.txt
+0 −12 contrib/bin/test/regression/t31out.txt.rnew
+6,012 −0 contrib/bin/test/regression/t32out.txt
+0 −12 contrib/bin/test/regression/t32out.txt.rnew
+3,896 −3,918 contrib/bin/test/regression/t33out.txt
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+1 −0 contrib/bin/test/regression/t34out.txt
+0 −2 contrib/bin/test/regression/t34out.txt.rnew
+13 −13 contrib/biolib/CMakeLists.txt
+3 −0 inst/docs/SweaveIt.R
+200 −0 inst/docs/SweaveIt.Rout
+618 −0 inst/docs/chapter12.snw
+8 −0 inst/docs/mqm/limitations.tex
+3 −0 inst/docs/sweaveit.bat
+16 −12 man/MQM.Rd
+73 −0 man/mqmall.Rd
+48 −35 man/mqmaugment.Rd
+1 −1 man/mqmbootstrap.Rd
+7 −6 man/mqmcistransplot.Rd
+1 −1 man/mqmcofactors.Rd
+5 −5 man/mqmcofactorseach.Rd
+47 −0 man/mqmgetmodel.Rd
+2 −2 man/mqmpackage-package.Rd
+1 −1 man/mqmplotall.Rd
+1 −1 man/mqmplotnice.Rd
+2 −3 man/mqmplotone.Rd
+2 −2 man/mqmscan.Rd
+6 −6 man/mqmscanfdr.Rd
+56 −0 man/mqmtestnormal.Rd
+2 −3 src/mqmaugment.cpp
+3 −1 src/mqmdatatypes.cpp
+3 −3 src/mqmdatatypes.h
+2 −2 src/mqmprob.cpp
+4 −4 src/mqmscan.cpp
+10 −0 src/scanone_mr.h
+1 −1 tests/test_qtl.R
2 changes: 1 addition & 1 deletion tools/cmake-support
Submodule cmake-support updated 9 files
+3 −0 TODO
+4 −0 modules/FindMap.cmake
+2 −0 modules/FindMapLibraries.cmake
+3 −0 modules/FindMapRuby.cmake
+82 −38 modules/FindRLibs.cmake
+10 −0 modules/MapMacros.cmake
+2 −0 modules/PerlMacros.cmake
+2 −0 modules/PythonMacros.cmake
+6 −0 modules/RubyMacros.cmake

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