Subtile-based GUI-Assisted Refiner: a software for quality control and cleaning of ultra-high-throughput DNA sequencing data
Yukuto Sato, Kaname Kojima, Naoki Nariai, Yumi Yamaguchi-Kabata, Yosuke Kawai, Mamoru Takahashi, Takahiro Mimori and Masao Nagasaki. 2014. SUGAR: graphical user interface-based data refiner for high-throughput DNA sequencing. BMC Genomics 15:664. doi:10.1186/1471-2164-15-664.
The commands and options are described at the URL https://github.com/biomedinfo/sugar/wiki.