diff --git a/rLPJGUESS/DESCRIPTION b/rLPJGUESS/DESCRIPTION index a28a802..ad38a36 100644 --- a/rLPJGUESS/DESCRIPTION +++ b/rLPJGUESS/DESCRIPTION @@ -1,11 +1,13 @@ Package: rLPJGUESS Title: A R package that wraps the LPJ-GUESS 3.1 model -Version: 1.1.0 +Version: 1.1.1 +Date: 2018-07-03 Authors@R: c(person("Florian", "Hartig", , "florian.hartig@biom.uni-freiburg.de", role = c("aut")), person("Maurizio", "Bagnara", , "maurizio.bagnara@biom.uni-freiburg.de", role = c("aut", "cre")), person("Ramiro", "Silveyra Gonzalez", , "rasilgon@gmail.com", role = c("aut"))) -Description: The rLPJGUESS package provides functions to run LPJ-GUESS within R. It - also allows to parallelize the model execution on personal laptops and on HPC. +Description: The rLPJGUESS package provides functions to run LPJ-GUESS within + R. It also allows to parallelize the model execution on personal laptops and on + HPC clusters. Depends: R (>= 3.1.0) Imports: @@ -17,7 +19,7 @@ Suggests: rmarkdown (>= 1.3), testthat (>= 1.0.2), Rmpi (>= 0.6-5) -License: file LICENSE +License: GPL-3 LazyData: true VignetteBuilder: knitr -RoxygenNote: 6.0.1 +RoxygenNote: 5.0.1 diff --git a/rLPJGUESS/LICENSE b/rLPJGUESS/LICENSE deleted file mode 100644 index 99fcff1..0000000 --- a/rLPJGUESS/LICENSE +++ /dev/null @@ -1,7 +0,0 @@ -The rLPJGUESS package is licenced under GPL-3, with the following additions (permitted under section 7 of the GPL-3): - -1) Attribution: any derivatives of this work must prominently acknowledge the original authors (either the authors of the entire package, or, if only a particular function is used, the author specified in the help file) - -2) Tracking of modifications: any derivatives must keep a record that allows to see how the original work has been modified, either via a changelog, or through publically accessible version control. - -3) Preservation of the additions: licencing of any derivatives of this work must maintain requirements 1,2. diff --git a/rLPJGUESS/NEWS b/rLPJGUESS/NEWS new file mode 100644 index 0000000..cac4d3c --- /dev/null +++ b/rLPJGUESS/NEWS @@ -0,0 +1,5 @@ + +rLPJGUESS 1.1.1 + +- various smaller fixes +- improved unit tests diff --git a/rLPJGUESS/R/LPJDataClass.R b/rLPJGUESS/R/LPJDataClass.R index 5b22f4a..4d2058b 100644 --- a/rLPJGUESS/R/LPJDataClass.R +++ b/rLPJGUESS/R/LPJDataClass.R @@ -9,6 +9,7 @@ #' } #' @keywords rLPJGUESS #' @export +#' @example /inst/examples/LPJDataClassHelp.R #' @author Ramiro Silveyra Gonzalez setClass("LPJData", representation( diff --git a/rLPJGUESS/R/LPJSetupClass.R b/rLPJGUESS/R/LPJSetupClass.R index 991df2a..91ed78f 100644 --- a/rLPJGUESS/R/LPJSetupClass.R +++ b/rLPJGUESS/R/LPJSetupClass.R @@ -16,6 +16,7 @@ #' } #' @keywords rLPJGUESS #' @export +#' @example /inst/examples/LPJSetupClassHelp.R #' @author Ramiro Silveyra Gonzalez setClass("LPJSetup", representation( diff --git a/rLPJGUESS/R/callLPJ.R b/rLPJGUESS/R/callLPJ.R index feb8e8b..78ad299 100644 --- a/rLPJGUESS/R/callLPJ.R +++ b/rLPJGUESS/R/callLPJ.R @@ -8,13 +8,12 @@ #' If not provided, package templates will be used #' @param mode a character string indicating whether using cru or cf data #' @return none +#' @details Please note that this function is integrated in \code{\link{runLPJ}}. #' @keywords rLPJGUESS #' @export #' @author Ramiro Silveyra Gonzalez, Maurizio Bagnara, Florian Hartig #' @note Based an older code of Istem Fer, Uni Potsdam -#' @examples \dontrun{ -#' callLPJ("/home/LPJrun", "/home/LPJrun/runDirectory1", "global_cru.ins") -#' } +#' @example /inst/examples/callLPJHelp.R callLPJ <- function(mainDir, runDir , template2, mode){ #----------------------------------------------------------------------------# # CHECK INPUTS AND EXIT IF ANY ERROR diff --git a/rLPJGUESS/R/exitMPI.R b/rLPJGUESS/R/exitMPI.R index 998c4fb..d1bf67c 100644 --- a/rLPJGUESS/R/exitMPI.R +++ b/rLPJGUESS/R/exitMPI.R @@ -10,9 +10,7 @@ #' The function is a wrapper of mpi.finalize from the Rmpi package. Check the #' package manual for futher advise on using mpi.finalize and mpi.quit. #' -#' @examples \dontrun{ -#' exitMPI() -#' } +#' @example /inst/examples/exitMPIHelp.R exitMPI <- function(){ if (is.loaded("mpi_initialize")){ if (Rmpi::mpi.comm.size(comm =1) > 1){ diff --git a/rLPJGUESS/R/getData.R b/rLPJGUESS/R/getData.R index c2cb904..7a909c4 100644 --- a/rLPJGUESS/R/getData.R +++ b/rLPJGUESS/R/getData.R @@ -1,7 +1,7 @@ #' @title A function to process LPJ-GUESS outputs #' @description This function reads the ASCII outputs produced by LPJ-GUESS. #' It takes a list of output types (typeList) and finds them in the specified path. -#' The data is stored in a data class object: LPJData. If processing is TRUE, +#' The data is stored in a data class object: \linkS4class{LPJData}. If processing is TRUE, #' the data will be stored as zoo time series. Ohterwise, as data frames. #' @param x a character string indicating path to the output files #' @param typeList a character vector with the outputs to be analyzed. @@ -11,18 +11,17 @@ #' the processed outputs of the model (optional) #' @param processing a boolean indicating whether output files will be turned #' into time series (default is FALSE) -#' @return the processed data returned in a S4 Class: LPJData Class +#' @return the processed data returned in a S4 Class: \linkS4class{LPJData} class +#' @details Please note that this function is integrated in \code{\link{runLPJ}}, +#' which alread returns the data as a \linkS4class{LPJData} object. #' @seealso \linkS4class{LPJData}, \url{https://cran.r-project.org/web/packages/zoo/zoo.pdf} #' @author Ramiro Silveyra Gonzalez, Maurizio Bagnara, Florian Hartig #' @note Based on an older code of Joerg Steinkamp #' @details To convert the outputs into zoo time series is only supported when running the -#' model for one grid cell. For running LPJ-GUESS for several grid cells, please set +#' model for one grid cell. When running LPJ-GUESS for several grid cells, please set #' processing to FALSE. #' @export -#' @examples \dontrun{ -#' LPJout <- getLPJData( typeList = c("aaet", "cflux","lai", "nflux"), -#' "~/path/to/output/files", runInfo = list(parameter1 = 0.5, grid = 1)) -#' } +#' @example /inst/examples/getDataHelp.R getLPJData <- function(x, typeList = NULL, runInfo=NULL, processing = FALSE){ #, fun = NULL){ # other options which could be included: diff --git a/rLPJGUESS/R/getDesign.R b/rLPJGUESS/R/getDesign.R index 743e88d..b495b68 100644 --- a/rLPJGUESS/R/getDesign.R +++ b/rLPJGUESS/R/getDesign.R @@ -6,9 +6,7 @@ #' @return a list or a matrix with design parameter names and their values #' @export #' @author Ramiro Silveyra Gonzalez, Maurizio Bagnara -#' @examples \dontrun{ -#' parameterList <- getParameterList("global") -#' } +#' @example /inst/examples/getDesignHelp.R getDesign <- function(scale, list = F){ if ( is.null(scale) || scale != "global" & scale != "europe"){ stop("Please provide a valid scale: global or europe") diff --git a/rLPJGUESS/R/getParameterList.R b/rLPJGUESS/R/getParameterList.R index 85230f2..820b2b2 100644 --- a/rLPJGUESS/R/getParameterList.R +++ b/rLPJGUESS/R/getParameterList.R @@ -6,10 +6,10 @@ #' as a list, otherwise as a matrix. #' @return a list or a matrix with parameter names and their values #' @export +#' @details To obtain the parameters used in previous runs, see \code{\link{getRunInfo}}. +#' @seealso \code{\link{runLPJ}}, \code{\link{getRunInfo}} #' @author Ramiro Silveyra Gonzalez, Maurizio Bagnara -#' @examples \dontrun{ -#' parameterList <- getParameterList("global") -#' } +#' @example /inst/examples/getParameterListHelp.R getParameterList <- function(scale, list = TRUE){ if ( is.null(scale) || scale != "global" & scale != "europe"){ stop("Please provide a valid scale: global or europe") diff --git a/rLPJGUESS/R/getRunInfo.R b/rLPJGUESS/R/getRunInfo.R index 3d5a6e5..73468ee 100644 --- a/rLPJGUESS/R/getRunInfo.R +++ b/rLPJGUESS/R/getRunInfo.R @@ -1,24 +1,14 @@ #' @title A get runInfo data -#' @description This function reads the runLPj outputs stored in the runInfoDir -#' and returns as a list, with the same structure as the runLPJ outputs. Additionally, -#' allows to retrieve the parameters from the runInfoDir files or the runLPJ outputs. +#' @description This function reads the \code{\link{runLPJ}} outputs stored in the runInfo file. Additionally, +#' allows to retrieve the parameters from the runInfoDir files. #' @param x a character string indicating the absolute path to the runInfoDir folder or -#' a R object produced by runLPJ +#' a R object produced by \code{\link{runLPJ}} #' @param parameters a character boolean to specify whether to return the parameters -#' instead of the LPJData objects +#' instead of the \linkS4class{LPJData} objects +#' @seealso \code{\link{runLPJ}}, \linkS4class{LPJData} #' @export #' @author Ramiro Silveyra Gonzalez -#' @examples \dontrun{ -#' # recover the data from the runInfo folder -#' result <- getRunInfo("/some/absolute/path/runInfo_2016_08_11_121507") -#' -#' # recover only the paramaters from the runInfo folder -#' parameters <- getRunInfo("/some/absolute/path/runInfo_2016_08_11_121507", parameters =T) -#' -#' # recover only the parameters from the result -#' parameters <- getRunInfo(result, parameters =T) -#' -#' } +#' @example /inst/examples/getRunInfoHelp.R getRunInfo <- function(x, parameters = F){ if(parameters){ @@ -64,7 +54,7 @@ readRunInfo <- function(x){ if (length(outputs)==0 || !grepl("RData", outputs) & !grepl("Rdata", outputs) ){stop("runDirInfo folder is empty")} result <- try(lapply(outputs, function(x){ - LPJout <- loadRData + LPJout <- loadRData(x) }), F) if ('try-error' %in% class(result)){ stop("Invalid runDirInfo folder") } diff --git a/rLPJGUESS/R/getTemplate.R b/rLPJGUESS/R/getTemplate.R index 4cf8af5..c077a2e 100644 --- a/rLPJGUESS/R/getTemplate.R +++ b/rLPJGUESS/R/getTemplate.R @@ -7,10 +7,7 @@ #' @export #' @keywords rLPJGUESS #' @author Ramiro Silveyra Gonzalez, Maurizio Bagnara, Florian Hartig -#' @examples \dontrun{ -#' template <- getTemplate("global.ins") -#' getTemplate("global.ins", "/home/LPJTemplates/") -#' } +#' @example /inst/examples/getTemplateHelp.R getTemplate <- function(type, outputDir = NULL){ if (is.null(type) || type != "global" & type != "global_cf" & type != "global_cru" & type != "europe" & type != "europe_cf" & type != "europe_cru"){ diff --git a/rLPJGUESS/R/getTypeList.R b/rLPJGUESS/R/getTypeList.R index 219e14f..0a3d327 100644 --- a/rLPJGUESS/R/getTypeList.R +++ b/rLPJGUESS/R/getTypeList.R @@ -3,9 +3,7 @@ #' @return a character vector with the default output types #' @export #' @author Ramiro Silveyra Gonzalez, Maurizio Bagnara -#' @examples \dontrun{ -#' typelist <- getTypeList() -#' } +#' @example /inst/examples/getTypeListHelp.R getTypeList <- function(){ tmp <- typelist.default return(tmp) diff --git a/rLPJGUESS/R/plotLPJData.R b/rLPJGUESS/R/plotLPJData.R index ee9b4bb..a907857 100644 --- a/rLPJGUESS/R/plotLPJData.R +++ b/rLPJGUESS/R/plotLPJData.R @@ -1,23 +1,24 @@ #' @title A plot function for LPJData objects -#' @description This function reads data from a LPJData object and plots the +#' @description This function reads data from a \linkS4class{LPJData} object and plots the #' variables against time. If the save.plots is set to TRUE, plots are saved in the output folder. -#' @param x a LPJData object. +#' @param x a \linkS4class{LPJData} object #' @param outDir a character string indicating the folder where the plots will be #' saved, if save.plot set to TRUE #' @param save.plots a boolean indicating whether the plots are saved in the outDir. -#' Plots will be saved as pdf +#' Plots will be saved as pdf. #' @param typeList a character vector with the outputs to be plotted #' @param prefix a character string specifying the prefix to be added to the plots files. #' Only relevant if saving plots is TRUE -#' @return plots for data types included in typeList. The grid cells will be plotted independently -#' @seealso \url{https://cran.r-project.org/web/packages/zoo/zoo.pdf} +#' @return time series plots for the data types included in typeList. +#' The grid cells will be plotted independently. +#' @details Please note that this function is integrated in \code{\link{runLPJ}}. +#' The call to \code{\link{runLPJ}} can plot straigthaway the outputs (see examples below). +#' @seealso \code{\link{runLPJ}}, \linkS4class{LPJData}, +#' \url{https://cran.r-project.org/web/packages/zoo/zoo.pdf} #' @export #' @keywords rLPJGUESS #' @author Ramiro Silveyra Gonzalez, Maurizio Bagnara, Florian Hartig -#' @examples \dontrun{ -#' plotLPJData(data, typeList = c("aaet", "lai"), -#' outDir = "/runDir/outDir", save.plots = FALSE) -#' } +#' @example /inst/examples/plotLPJDataHelp.R plotLPJData <- function(x, typeList = NULL, outDir= NULL, save.plots = FALSE, prefix = ""){ # checking input parameters diff --git a/rLPJGUESS/R/rLPJGUESS-package.R b/rLPJGUESS/R/rLPJGUESS-package.R index ce3bbf6..e409f37 100644 --- a/rLPJGUESS/R/rLPJGUESS-package.R +++ b/rLPJGUESS/R/rLPJGUESS-package.R @@ -26,7 +26,7 @@ #' \item \code{\link{getParameterList}} To obtain the parameter default values #' \item \code{\link{getDesign}} To obtain the default desgin #' \item \code{\link{getTypeList}} To obtain the default output model types -#' \item \code{\link{getRunInfo}} To recover data or parameters from the runInfoDir +#' \item \code{\link{getRunInfo}} To recover data or parameters from the runInfo file #' } #' #' @section IV. Other functions: \itemize{ @@ -35,6 +35,13 @@ #' \item \code{\link{writeTemplate}} To write LPJ-GUESS templates #' #' } +#' @section V. S4 classes: \itemize{ +#' \item \linkS4class{LPJData} To store both LPJ-GUESS outputs +#' and run information +#' \item \linkS4class{LPJSetup} To store the configuration for parallel +#' runs +#' } +#' #' #' @author Except where indicated otherwise, the functions in this package were #' written by Ramiro Silveyra Gonzalez, Maurizio Bagnara and Florian Hartig diff --git a/rLPJGUESS/R/runLPJ.R b/rLPJGUESS/R/runLPJ.R index 4d73314..dc823e7 100644 --- a/rLPJGUESS/R/runLPJ.R +++ b/rLPJGUESS/R/runLPJ.R @@ -1,21 +1,21 @@ #' @title The function to run the LPJ-GUESS in parallel -#' @description This function allows to run LPJ-GUESS the model serial -#' or parallel and returns the model outputs as an R object, which is also stored -#' as RData. +#' @description This function allows to run the LPJ-GUESS model serial +#' or parallel. It returns the model outputs as a \linkS4class{LPJData} object, +#' which can also be stored as RData. #' @param x either a LPJSetup object created with the setupLPJParallel function or a #' character string indicating the path to the directory where #' the model link and template are located, and in which the function will create -#' the directory structure for the outputs +#' the directory structure for the outputs. #' @param parameterList either a named list containing the parameters to be calibrated #' or a matrix. If running in parallel, parameter list should be either a list of of list or #' a matrix where each row is a parameter combination and the column names should be named -#' after the parameters. +#' after the parameters. See fucntion \code{\link{getParameterList}}) for default values. #' @param typeList a character vector with the outputs to be analyzed. -#' Default value is all outputs +#' Default value is all outputs. #' @param settings additional parameters \itemize{ #' \item gridList a character string providing the name of the text file with #' the grids to be included in the model, e.g, gridlist.txt. It must be in the mainDir. -#' Provide only the file name, not the path +#' Provide only the file name, not the path. #' \item mode a character string indicating whether using cru or cf data #' \item scale a character string indicating whether the model runs global or #' for europe @@ -51,42 +51,50 @@ #' maximum temperature input file #' \item template1 character string providing the general model template, #' e.g, global.ins. It must be in the mainDir. Provide only the file name, -#' not the path. If not provided, package templates will be used +#' not the path. If not provided, package templates will be used. #' \item template2 a character string providing the "specific" model template, #' e.g, global_cf.ins or global_cru.ins. It must be in the mainDir. Provide #' only the file name, not the path. If not provided, package templates will be -#' used +#' used. #' \item plot.data a boolean indicating whether the ouput data will be plotted #' (default FALSE) #' \item save.plots a boolean indicating whether the plots will be saved (default #' FALSE) #' \item processing a boolean indicating whether output files will be turned into zoo #' time series (default FALSE). This is only supported when running the model -#' for one grid cell. For several grid cells, please set processing to FALSE +#' for one grid cell. For several grid cells, please set processing to FALSE. #' \item parallel a character string providing the parallel strategy. If grids, it will #' parallelize grids. If parameters, it will parallelize parameters. If both, it will #' parallelize both grids and parameters. If auto, it will decided the strategy based #' on the provided parameterList and gridList. Default value is auto #' \item delete a boolean indicating whether output files should be deleted after -#' processing (default TRUE). Saved plots will not be deleted +#' processing (default TRUE). Saved plots will not be deleted. #' \item save a boolean indicating whether function outputs should be saved as RData -#' into an output directory named (runInfoDir_DATE). Default is TRUE +#' into an output directory named (runInfoDir_DATE). Default is TRUE. #' \item runID an integer after which the output directory will be named (default empty). -#' If parallel TRUE, ID is ignored and defined by setupLPJParallel -#' \item design a named list containing the general parameters for LPJ-GUESS. Seefunction \code{\link{getDesign}} -#' for default values and examples +#' If parallel TRUE, ID is ignored and defined by setupLPJParallel. +#' \item design a named list containing the general parameters for LPJ-GUESS. +#' See function \code{\link{getDesign}} for default values and examples. #' } -#' @return an object of class LPJData. The LPJData object will be automatically stored as RData -#' in a folder in the mainDir. The folder will be named as runInfo plus the date in format %Y_%m_%d_%H%M%S. +#' @return an object of class \linkS4class{LPJData} The \linkS4class{LPJData} object +#' will be automatically stored as RData in a folder in the mainDir. The folder +#' will be named as runInfo plus the date in format %Y_%m_%d_%H%M%S. #' @export -#' @section Warning: When using MPI clusters, please call the function \code{\link{exitMPI}} +#' @section Model templates: +#' It is not mandatory to provide the model templates. The package contais model templates +#' (see \code{\link{getTemplate}}) and will write them with the specified information +#' (input files, design, parameters). +#' If you decided to provide templates to \code{\link{runLPJ}}, you can either use +#' the package ones or a self edited templates. The package assumes a specific +#' coding for writing the parameters values, design options and input files paths. +#' For this reason, we recommend to use the package templates. +#' Yet, if you want to use self edited templates, please take the package templates +#' as a reference (see \code{\link{getTemplate}}). +#' @section Warning: +#' When using MPI clusters, please call the function \code{\link{exitMPI}} #' before terminating your R session. -#' @section Model templates: The provided templates can be either the ones provided by the package or -#' a self edited templates. The function assumes a specific coding for writing the -#' parameters values. For this reason, we recommend to use the package templates. -#' If using self edited templates, please take the package templates as a reference (\code{\link{getTemplate}}) #' @details The runLPJ in parallel assumes the existence of a folder the model templates -#' for LPJ-GUESS (optional) and link to the model executable. +#' for LPJ-GUESS (optional) and link to the model executable: mainDir. #' Running the LPJ-GUESS in parallel involves two steps. First, to create a parallel #' setup (\code{\link{setupLPJParallel}}), and second, to actually run the model #' (\code{\link{runLPJ}}). The parallelization requires the package \emph{snow} for SOCK clusters or @@ -94,82 +102,11 @@ #' @seealso \url{https://cran.r-project.org/web/packages/Rmpi/Rmpi.pdf}, #' \url{https://cran.r-project.org/web/packages/snow/snow.pdf}, #' \code{\link{setupLPJParallel}}, \code{\link{exitMPI}}, \linkS4class{LPJData}, -#' \linkS4class{LPJSetup} +#' \linkS4class{LPJSetup}, \code{\link{getParameterList}}, \code{\link{getDesign}} #' @export #' @keywords rLPJGUESS #' @author Ramiro Silveyra Gonzalez, Maurizio Bagnara, Florian Hartig -#' @examples \dontrun{ -#' -#' file.co2<-"/some/absolute/path/crudata/co2_1901-2013.txt" -#' file.cru <- "/some/absolute/path/crudata/cru_1901_2006.bin" -#' file.cru.misc <- "/some/absolute/path/crudata/cru_1901_2006misc.bin" -#' file.ndep <- "/some/absolute/path/crudata/GlobalNitrogenDeposition.bin" -#' file.temp <- "/some/absolute/path/cfdata/temp.nc" -#' file.prec <- "/some/absolute/path/cfdata/prec.nc" -#' file.insol <- "/some/absolute/path/cfdata/rad.nc" -#' -#' mainDir <- "/some/absolute/path/mainDir" -#' list.files(mainDir) -#' [1] "guess" or "guesscmd.exe" # link to the model executable -#' [2] "gridlist.txt" # list of gridcells -#' [3] "global.ins" # template1 (optional) -#' [4] "global_cru.ins" # template2 (optional) -#' -#' # General settings -#' settings <- list (gridList = gridList,mode = "cf", scale = "global", -#' file.co2 = file.co2, file.cru = file.cru, -#' file.cru.misc = file.cru.misc, file.ndep = file.ndep, -#' file.temp = file.temp, file.prec = file.prec, -#' file.insol = file.insol, delete = F) -#' -#' -#' # Single Run -#' result <- runLPJ(mainDir, settings= settings) -#' result -#' class : LPJData -#' LPJ template 1 : global.ins -#' LPJ template 2 : global_cf.ins -#' grid cells : 99 Somewhere -#' run directory : /some/absolute/path/mainDir/runDirectory -#' LPJ model outputs : 39 outputs -#' aaet agpp aiso amon anpp cflux clitter cmass cpool cton_leaf dens -#' firert fpc speciesheight lai maet mevap mgpp mintercep miso mlai mmon -#' mnee mnpp mpet mra mrh mrunoff mwcont_lower mwcont_upper nflux ngases -#' nlitter nmass npool nsources nuptake runoff vmaxnlim -#' -#' -#' # Parallel Run -#' # Create some paramaters to test the model. -#' # Number of runs is proportional to number of parameter being testet -#' parameterDefault <- list (run_emax = NULL) -#' -#' # Test 6 different values for emax. -#' par <- seq(1,5, len = 6) -#' # Create the list object with the parameters -#' parameterList <- vector("list", length(par)) -#' for (i in 1:length(par)) { -#' parameterDefault$run_emax <- par[i] -#' parameterList[[i]] <- parameterDefault -#' } -#' -#' # Call setupParallel -#' mySetup <- setupLPJParallel(3, "SOCK", "cf", -#' mainDir = "/some/absolute/path/mainDir") -#' -#' # Call runLPJ -#' result <- runLPJ(mySetup, settings= settings, parameterList = parameterList) -#' str(result,1) -#' List of 6 -#' $ :Formal class 'LPJData' [package "rLPJGUESS"] with 2 slots -#' $ :Formal class 'LPJData' [package "rLPJGUESS"] with 2 slots -#' $ :Formal class 'LPJData' [package "rLPJGUESS"] with 2 slots -#' $ :Formal class 'LPJData' [package "rLPJGUESS"] with 2 slots -#' $ :Formal class 'LPJData' [package "rLPJGUESS"] with 2 slots -#' $ :Formal class 'LPJData' [package "rLPJGUESS"] with 2 slots -#' -#' -#' } - +#' @example /inst/examples/runLPJHelp.R runLPJ <- function(x, settings, typeList=NULL, parameterList=NULL){ if (is.null(x)){ diff --git a/rLPJGUESS/R/setupLPJParallel.R b/rLPJGUESS/R/setupLPJParallel.R index 5dd4bcb..0870bb3 100644 --- a/rLPJGUESS/R/setupLPJParallel.R +++ b/rLPJGUESS/R/setupLPJParallel.R @@ -11,31 +11,15 @@ #' @param mainDir a character string indicating the path to the directory where #' the template and the model link are located, and in which the function will create #' the directory structure for the outputs -#' @return an LPJSetup object -#' @seealso \url{https://cran.r-project.org/web/packages/Rmpi/Rmpi.pdf}, +#' @return an \linkS4class{LPJSetup} object +#' @details Please note that the requested number of cores should not be larger +#' than the number of aimed model runs. +#' @seealso \code{\link{runLPJ}}, \linkS4class{LPJSetup}, \url{https://cran.r-project.org/web/packages/Rmpi/Rmpi.pdf}, #' \url{https://cran.r-project.org/web/packages/snow/snow.pdf} #' @export #' @keywords rLPJGUESS #' @author Ramiro Silveyra Gonzalez, Maurizio Bagnara, Florian Hartig -#' @examples \dontrun{ -#' mainDir <- "/some/absolute/path/mainDir" -#' list.files(mainDir) -#' [1] "guess" or "guesscmd.exe" # link to the model executable -#' [2] "gridlist.txt" # list of gridcells -#' [3] "global.ins" # template1 (optional) -#' [4] "global_cru.ins" # template2 (optional) -#' -#' mySetup <- setupLPJParallel(numCores= 3, clusterType = "SOCK", mainDir=mainDir) -#' mySetup -#' class : LPJSetup -#' cluster type : SOCK -#' number of cores : 3 -#' output directories : -#' /some/absolute/path/mainDir/runDirectory1 -#' /some/absolute/path/mainDir/runDirectory2 -#' /some/absolute/path/mainDir/runDirectory3 - -#'} +#' @example /inst/examples/setupLPJParallelHelp.R setupLPJParallel <- function(numCores, clusterType, mainDir) { #----------------------------------------------------------------------------# diff --git a/rLPJGUESS/R/writeTemplate.R b/rLPJGUESS/R/writeTemplate.R index ae123cb..a903196 100644 --- a/rLPJGUESS/R/writeTemplate.R +++ b/rLPJGUESS/R/writeTemplate.R @@ -14,18 +14,18 @@ #' a self edited template. The function assumes a specific coding for writing the #' parameters values. For this reason, we recommend to use the package templates. #' If using self edited templates, please take the package templates as a reference. -#' @details If check is serial, it will return the complete and checked parameterList. +#' @details Please note that this function is integrated in \code{\link{runLPJ}}. +#' +#' Check: If check is serial, it will return the complete and checked parameterList. #' If parallel, it would only check the provided parameters. Please only use serial, #' other options are handled internally in the parallelization. +#' #' @seealso \code{\link{getTemplate}}, \code{\link{getParameterList}} #' @export #' @keywords rLPJGUESS #' @author Ramiro Silveyra Gonzalez, Maurizio Bagnara, Florian Hartig, #' @note Based an older code of Istem Fer, Uni Potsdam -#' @examples \dontrun{ -#' writeTemplate("global.ins", list(run_lamda_max = 0.5, run_emax= 5), -#' "/home/lpjRun/runDirectory1") -#' } +#' @example /inst/examples/writeTemplateHelp.R writeTemplate <- function(template1, parameterList, runDir, check = "serial"){ # Checking provided parameters diff --git a/rLPJGUESS/inst/examples/LPJDataClassHelp.R b/rLPJGUESS/inst/examples/LPJDataClassHelp.R new file mode 100644 index 0000000..62ca297 --- /dev/null +++ b/rLPJGUESS/inst/examples/LPJDataClassHelp.R @@ -0,0 +1,61 @@ +\dontrun{ +### Serial run ### +# After running rLPJ or getLPJData +result <- runLPJ(mainDir, settings= settings) + + result + + class : LPJData + run directory : /some/absolute/paht/runDirectory + LPJ template 1 : global.ins + LPJ template 2 : global_cf.ins + grid cells : 1 cell(s) + 0 Somewhere + LPJ model outputs : 39 output(s) + aaet agpp aiso amon anpp cflux clitter cmass cpool cton_leaf dens + firert fpc speciesheight lai maet mevap mgpp mintercep miso mlai mmon + mnee mnpp mpet mra mrh mrunoff mwcont_lower mwcont_upper nflux ngases + nlitter nmass npool nsources nuptake runoff vmaxnlim + +### Parallel run ### +# After running runLPJ (20 simulations) +str(result,1) + + List of 20 + + $ :Formal class 'LPJData' [package "rLPJGUESS"] with 2 slots + + $ :Formal class 'LPJData' [package "rLPJGUESS"] with 2 slots + + $ :Formal class 'LPJData' [package "rLPJGUESS"] with 2 slots + + $ :Formal class 'LPJData' [package "rLPJGUESS"] with 2 slots + + $ :Formal class 'LPJData' [package "rLPJGUESS"] with 2 slots + + $ :Formal class 'LPJData' [package "rLPJGUESS"] with 2 slots + + [...] + + +## LPJData options +# Access the model outputs +result["dataTypes"] + +# Access speficic outputs +result["lai"] + +# Acces the runInfo +result["runInfo"] + +# Access specific runInfo like template name +result["template1"] + +# Access specific runInfo like template content +result["template1Mem"] + +# Check what other information is available in each slot +names(result["runInfo"]) +names(result["dataTypes"]) + +} diff --git a/rLPJGUESS/inst/examples/LPJSetupClassHelp.R b/rLPJGUESS/inst/examples/LPJSetupClassHelp.R new file mode 100644 index 0000000..28b7cd1 --- /dev/null +++ b/rLPJGUESS/inst/examples/LPJSetupClassHelp.R @@ -0,0 +1,19 @@ +\dontrun{ +# Create a parallel setup for MPI cluster +mySetup <- setupLPJParallel(numCores= 20, clusterType = "MPI", mainDir=mainDir) + +# Create a parallel setup for SOCK cluster +mySetup <- setupLPJParallel(numCores= 3, clusterType = "SOCK", mainDir=mainDir) + +# Run LPJ-GUESS in parallel +result <- runLPJ(x = mySetup, settings= settings, parameterList = parameterList ) + + +# Accessing information +mySetup["clusterType"] +mySetup["numCores"] +mySetup["mainDir"] +mySetup["runDir"] +mySetup["outDir"] + +} diff --git a/rLPJGUESS/inst/examples/callLPJHelp.R b/rLPJGUESS/inst/examples/callLPJHelp.R new file mode 100644 index 0000000..8738365 --- /dev/null +++ b/rLPJGUESS/inst/examples/callLPJHelp.R @@ -0,0 +1,28 @@ +\dontrun{ +# main directory +mainDir <- "/some/absolute/path/mainDir" +list.files(mainDir) +[1] "guess" or "guesscmd.exe" # link to the model executable +[2] "gridlist.txt" # list of gridcells +[3] "global.ins" # template1 (optional) +[4] "global_cru.ins" # template2 (optional) + +# The run directory that is whithin the mainDir +runDir <- "/some/absolute/path/mainDir/runDirectory" + +## mode cru ## +# The template2 of the model what is within the runDirectoy. +template2 <- "global_cru.ins" +template2 <- "europe_cru.ins" + +# Call the model +callLPJ(mainDir = mainDir, runDir = runDir, template2 = template2, mode = "cru") + +## mode cf ## +# The template2 of the model what is within the runDirectoy. +template2 <- "global_cf.ins" +template2 <- "europe_cf.ins" + +# Call the model +callLPJ(mainDir = mainDir, runDir = runDir, template2 = template2, mode = "cf") +} diff --git a/rLPJGUESS/inst/examples/exitMPIHelp.R b/rLPJGUESS/inst/examples/exitMPIHelp.R new file mode 100644 index 0000000..61ad785 --- /dev/null +++ b/rLPJGUESS/inst/examples/exitMPIHelp.R @@ -0,0 +1,24 @@ +\dontrun{ +##### MPI CLUSTER ###### +# Create a parallel setup for MPI cluster +mySetup <- setupLPJParallel(numCores= 20, clusterType = "MPI", mainDir=mainDir) +mySetup +# 20 different parameters to test (the number must be larger than the number of cores) + # as a matrix +parameterList <- as.matrix(seq(1,5, len = 20)) +colnames(parameterList) <- "common_emax" + # as a list +dummy <- list (common_emax = NULL) +par <- seq(1,5, len = 20) +parameterList <- vector("list", length(par)) +for (i in 1:length(par)) { + dummy$common_emax <- par[i] + parameterList[[i]] <- dummy +} + +# Run the model +result <- runLPJ(mySetup, settings= settings, parameterList = parameterList ) + +# At the end of the script call exitMPI() +exitMPI() +} diff --git a/rLPJGUESS/inst/examples/getDataHelp.R b/rLPJGUESS/inst/examples/getDataHelp.R new file mode 100644 index 0000000..e38e587 --- /dev/null +++ b/rLPJGUESS/inst/examples/getDataHelp.R @@ -0,0 +1,20 @@ +\dontrun{ +# Specify folder where the ASCII outputs produced by LPJ-GUESS files are located +outDir <- "/some/absolute/path/runDirectory/outDirectory" +list.files(outDir) + +# Any specific output you are interest in +typeList <- c("aaet","lai") + +# What information should be associated to the data +runInfo <- list(parameters = 0.5, grid = 1) + +# Call the function and obtain the outputs as LPJData and + # stored as zoo time series +LPJout <- getLPJData(x = outDir, typeList = typeList, runInfo = runInfo, processing = TRUE) + # stored as data.frame +LPJout <- getLPJData(x = outDir, typeList = typeList, runInfo = runInfo, processing = FALSE) + +# Plot the data +plotLPJData(LPJout) + } diff --git a/rLPJGUESS/inst/examples/getDesignHelp.R b/rLPJGUESS/inst/examples/getDesignHelp.R new file mode 100644 index 0000000..6b30267 --- /dev/null +++ b/rLPJGUESS/inst/examples/getDesignHelp.R @@ -0,0 +1,47 @@ +\dontrun{ +# Select the model scale +scaleLPJ <- "europe" + +# Create the general settings +LPJsettings <- list(file.co2 = file.path(mainDir, "crudata", "co2_1765-2500_RCP3.txt"), + file.cru = file.path(mainDir, "crudata", "cru_1901_2006.bin"), + file.cru.misc = file.path(mainDir, "crudata", "cru_1901_2006misc.bin"), + file.ndep = file.path(mainDir, "crudata", "GlobalNitrogenDeposition.bin"), + file.temp = file.path(mainDir, "temp.nc"), + file.prec = file.path(mainDir, "prec.nc"), + file.insol = file.path(mainDir, "rad.nc"), + variable.temp = "temp", variable.insol = "rad", + variable.prec = "prec", delete = FALSE, save = FALSE, processing = TRUE, + plot.data = FALSE, save.plots = FALSE, scale = scaleLPJ, mode = "cf", + gridList = "gridlist.txt") + +# Define the design for the simulation: number of patches simulated, +# disturbances, and other simulation options + +# Obtain the standard design +designLPJ <- getDesign(scaleLPJ, list = TRUE) + +# Modify the desired options +designLPJ$run_vegmode <- "cohort" +designLPJ$run_ifcentury <- 0 +designLPJ$run_iffire <- 0 +designLPJ$run_ifnlim <- 0 +designLPJ$run_ifstochestab <- 0 +designLPJ$run_ifstochmort <- 0 +designLPJ$run_patcharea <- 25^2 +designLPJ$run_npatch <- 1 +designLPJ$run_ifdisturb <- 0 +designLPJ$run_nyear_spinup <- 1 +designLPJ$run_freenyears <- 0 +designLPJ$run_save_state <- 0 +designLPJ$run_restart <- 0 +designLPJ$run_state_path <- mainDir + +# Add the desing to the settings +LPJsettings$design <- designLPJ + +# Run the model +results_SPP <- runLPJ(x = mainDur, parameterList = parameters, + typeList = typeList, settings = LPJsettings) + +} diff --git a/rLPJGUESS/inst/examples/getParameterListHelp.R b/rLPJGUESS/inst/examples/getParameterListHelp.R new file mode 100644 index 0000000..1f031b3 --- /dev/null +++ b/rLPJGUESS/inst/examples/getParameterListHelp.R @@ -0,0 +1,21 @@ +\dontrun{ +# Get the default parameters as a list +parameterList <- getParameterList("global", list = TRUE) +parameterList <- getParameterList("europe", list = TRUE) + +# Modify any parameter +parameterList$common_emax <- 1 +parameterList[["common_emax"]] <- 1 + + +# Get the default parameters as a matrix +parameterList <- getParameterList("global", list = FALSE) +parameterList <- getParameterList("europe", list = FALSE) + +# Modify any parameter +parameterList["common_emax",] <- 1 + +# Call runLPJ with the desired parameter +result <- runLPJ(x=mainDir, settings=settings, parameterList = parameterList) + +} diff --git a/rLPJGUESS/inst/examples/getRunInfoHelp.R b/rLPJGUESS/inst/examples/getRunInfoHelp.R new file mode 100644 index 0000000..a7d132f --- /dev/null +++ b/rLPJGUESS/inst/examples/getRunInfoHelp.R @@ -0,0 +1,10 @@ +\dontrun{ +# recover the data from the runInfo folder +result <- getRunInfo("/some/absolute/path/runInfo_2016_08_11_121507") + +# recover only the paramaters from the runInfo folder +parameters <- getRunInfo("/some/absolute/path/runInfo_2016_08_11_121507", parameters =TRUE) + +# recover only the parameters from the result +parameters <- getRunInfo(result, parameters =TRUE) +} diff --git a/rLPJGUESS/inst/examples/getTemplateHelp.R b/rLPJGUESS/inst/examples/getTemplateHelp.R new file mode 100644 index 0000000..054c446 --- /dev/null +++ b/rLPJGUESS/inst/examples/getTemplateHelp.R @@ -0,0 +1,19 @@ +\dontrun{ +# Get templates as r objects +template <- getTemplate("global") +template <- getTemplate("global_cf") +template <- getTemplate("global_cru") +template <- getTemplate("europe") +template <- getTemplate("europe_cf") +template <- getTemplate("europe_cru") + + +# Get templates written in a folder +getTemplate("global","/home/mainDir/") +getTemplate("global_cf","/home/mainDir/") +getTemplate("global_cru","/home/mainDir/") +getTemplate("europe","/home/mainDir/") +getTemplate("europe_cf","/home/mainDir/") +getTemplate("europe_cru", "/home/mainDir/") +) +} diff --git a/rLPJGUESS/inst/examples/getTypeListHelp.R b/rLPJGUESS/inst/examples/getTypeListHelp.R new file mode 100644 index 0000000..19277e0 --- /dev/null +++ b/rLPJGUESS/inst/examples/getTypeListHelp.R @@ -0,0 +1,2 @@ +typelist <- getTypeList() +typelist diff --git a/rLPJGUESS/inst/examples/plotLPJDataHelp.R b/rLPJGUESS/inst/examples/plotLPJDataHelp.R new file mode 100644 index 0000000..e039cea --- /dev/null +++ b/rLPJGUESS/inst/examples/plotLPJDataHelp.R @@ -0,0 +1,44 @@ +\dontrun{ +### Plot LPJData object ### + +# After runLPJ +result <- runLPJ(mainDir, settings= settings) +plotLPJData(result, save.plots = FALSE) + +# After getLPJData +result <- getLPJData(x = outDir, typeList = typeList, runInfo = runInfo, processing = TRUE) +result <- getLPJData(x = outDir, typeList = typeList, runInfo = runInfo, processing = FALSE) +plotLPJData(result, save.plots = FALSE) + + +# Plot specific outputs +plotLPJData(result, typeList = c("aaet", "lai"), save.plots = FALSE) + +# Save plots +plotLPJData(result, outDir = "/runDir/outDir", save.plots = TRUE) + + +### Plot from runLPJ ### +LPJsettings <- list(file.co2 = file.path(mainDir, "crudata", "co2_1765-2500_RCP3.txt"), + file.cru = file.path(mainDir, "crudata", "cru_1901_2006.bin"), + file.cru.misc = file.path(mainDir, "crudata", "cru_1901_2006misc.bin"), + file.ndep = file.path(mainDir, "crudata", "GlobalNitrogenDeposition.bin"), + file.temp = file.path(mainDir, "temp.nc"), + file.prec = file.path(mainDir, "prec.nc"), + file.insol = file.path(mainDir, "rad.nc"), + variable.temp = "temp", variable.insol = "rad", + variable.prec = "prec", delete = FALSE, save = FALSE, processing = TRUE, + plot.data = FALSE, save.plots = FALSE, scale = scaleLPJ, mode = "cf", + gridList = "gridlist.txt") + +# Activate plot option +LPJsettings$plot.data <- TRUE + +# Save plots +LPJsettings$plot.data <- TRUE +LPJsettings$save.plots <- TRUE + +# runLPJ and plot +results <- runLPJ(x = mainDur, settings = LPJsettings) + +} diff --git a/rLPJGUESS/inst/examples/runLPJHelp.R b/rLPJGUESS/inst/examples/runLPJHelp.R new file mode 100644 index 0000000..c855d4f --- /dev/null +++ b/rLPJGUESS/inst/examples/runLPJHelp.R @@ -0,0 +1,86 @@ +\dontrun{ +### Settings and options ### + +# main directory +mainDir <- "/some/absolute/path/mainDir" +list.files(mainDir) + [1] "guess" or "guesscmd.exe" # link to the model executable + [2] "gridlist.txt" # list of gridcells + [3] "global.ins" # template1 (optional) + [4] "global_cru.ins" # template2 (optional) + +# Input files +file.co2<-"/some/absolute/path/crudata/co2_1901-2013.txt" +file.cru <- "/some/absolute/path/crudata/cru_1901_2006.bin" +file.cru.misc <- "/some/absolute/path/crudata/cru_1901_2006misc.bin" +file.ndep <- "/some/absolute/path/crudata/GlobalNitrogenDeposition.bin" +file.temp <- "/some/absolute/path/cfdata/temp.nc" +file.prec <- "/some/absolute/path/cfdata/prec.nc" +file.insol <- "/some/absolute/path/cfdata/rad.nc" + +# General settings +settings <- list (gridList = gridList,mode = "cf", scale = "global", + file.co2 = file.co2, file.cru = file.cru, + file.cru.misc = file.cru.misc, file.ndep = file.ndep, + file.temp = file.temp, file.prec = file.prec, + file.insol = file.insol, delete = FALSE) + +# (Optional) Modify design + # Obtain the standard design +designLPJ <- getDesign(scaleLPJ, list = TRUE) + + # Modify the desired options +designLPJ$run_vegmode <- "cohort" +designLPJ$run_ifcentury <- 0 +designLPJ$run_iffire <- 0 +designLPJ$run_ifnlim <- 0 + + # Add to settings +settings$design <- designLPJ + +### Single Run ### +result <- runLPJ(x=mainDir, settings=settings) +result + class : LPJData + LPJ template 1 : global.ins + LPJ template 2 : global_cf.ins + grid cells : 99 Somewhere + run directory : /some/absolute/path/mainDir/runDirectory + LPJ model outputs : 39 outputs + aaet agpp aiso amon anpp cflux clitter cmass cpool cton_leaf dens + firert fpc speciesheight lai maet mevap mgpp mintercep miso mlai mmon + mnee mnpp mpet mra mrh mrunoff mwcont_lower mwcont_upper nflux ngases + nlitter nmass npool nsources nuptake runoff vmaxnlim + + +### Parallel Run ### + +# Create some paramaters to test the model. +# Number of runs is proportional to number of parameter being testet +parameterDefault <- list (run_emax = NULL) + +# Test 6 different values for emax. +par <- seq(1,5, len = 6) +# Create the list object with the parameters +parameterList <- vector("list", length(par)) +for (i in 1:length(par)) { + parameterDefault$run_emax <- par[i] + parameterList[[i]] <- parameterDefault +} + +# Call setupParallel +mySetup <- setupLPJParallel(numCores=3, clusterType="SOCK", mainDir=mainDir) + +# Call runLPJ +result <- runLPJ(x=mySetup, settings=settings, parameterList=parameterList) +str(result,1) + List of 6 + $ :Formal class 'LPJData' [package "rLPJGUESS"] with 2 slots + $ :Formal class 'LPJData' [package "rLPJGUESS"] with 2 slots + $ :Formal class 'LPJData' [package "rLPJGUESS"] with 2 slots + $ :Formal class 'LPJData' [package "rLPJGUESS"] with 2 slots + $ :Formal class 'LPJData' [package "rLPJGUESS"] with 2 slots + $ :Formal class 'LPJData' [package "rLPJGUESS"] with 2 slots + + +} diff --git a/rLPJGUESS/inst/examples/setupLPJParallelHelp.R b/rLPJGUESS/inst/examples/setupLPJParallelHelp.R new file mode 100644 index 0000000..4b4a7a1 --- /dev/null +++ b/rLPJGUESS/inst/examples/setupLPJParallelHelp.R @@ -0,0 +1,40 @@ +\dontrun{ +# 20 different parameters or parameters conbinations to test + # as a matrix +parameterList <- as.matrix(seq(1,5, len = 20)) +colnames(parameterList) <- "common_emax" + # as a list +dummy <- list (common_emax = NULL) +par <- seq(1,5, len = 20) +parameterList <- vector("list", length(par)) +for (i in 1:length(par)) { + dummy$common_emax <- par[i] + parameterList[[i]] <- dummy +} + + +# Create a parallel setup for MPI cluster +# Number of cores must be equal or larger than the parameter combinations +mySetup <- setupLPJParallel(numCores= 20, clusterType = "MPI", mainDir=mainDir) + +# Create a parallel setup for SOCK cluster +# Number of cores must be equal or larger than the parameter combinations +mySetup <- setupLPJParallel(numCores= 3, clusterType = "SOCK", mainDir=mainDir) + +# Run LPJ-GUESS in parallel +result <- runLPJ(x = mySetup, settings= settings, parameterList = parameterList ) + +# After running runLPJ (20 simulations) +str(result,1) + + List of 20 + + $ :Formal class 'LPJData' [package "rLPJGUESS"] with 2 slots + + $ :Formal class 'LPJData' [package "rLPJGUESS"] with 2 slots + + [...] + + + +} diff --git a/rLPJGUESS/inst/examples/trying_Rlpj.R b/rLPJGUESS/inst/examples/trying_Rlpj.R deleted file mode 100644 index 68a332b..0000000 --- a/rLPJGUESS/inst/examples/trying_Rlpj.R +++ /dev/null @@ -1,128 +0,0 @@ -#-------------------------------------------------------------------------------# -# load library -library(rLPJGUESS) -#-------------------------------------------------------------------------------# -# GENERAL SETTINGS -#-------------------------------------------------------------------------------# -# We need to specify the path of each input file inside the mainDir: -file.co2<-"/home/trashtos/GitHub/lpjRun/crudata/co2_1901-2013_FAKE.txt" -file.cru <- "/home/trashtos/GitHub/lpjRun/crudata/cru_1901_2006.bin" -file.cru.misc <- "/home/trashtos/GitHub/lpjRun/crudata/cru_1901_2006misc.bin" -file.ndep <- "/home/trashtos/GitHub/lpjRun/crudata/GlobalNitrogenDeposition.bin" - - - - -# if you are using the global_cf.ins file you neet to specify the site specific input files as well -file.temp <- "/home/trashtos/GitHub/lpjRun/inputLPJ/temp.nc" -file.prec <- "/home/trashtos/GitHub/lpjRun/inputLPJ/prec.nc" -file.insol <- "/home/trashtos/GitHub/lpjRun/inputLPJ/rad.nc" -variable.temp <- "temp" -variable.prec <-"prec" -variable.insol <- "rad" - - -mainDir <- "/home/trashtos/GitHub/lpjRun" -gridList <- "gridlist_geb.txt" - -toremove <- list.files(mainDir,full.names = T, recursive = T, pattern = "run") -do.call(file.remove, list(toremove)) -settings <- list (gridList = gridList,mode = "cf", scale = "europe", - file.co2 = file.co2, file.cru = file.cru, file.cru.misc = file.cru.misc, - file.ndep = file.ndep, file.temp = file.temp, file.prec = file.prec, - file.insol = file.insol, variable.temp = variable.temp, variable.prec = variable.prec, - variable.insol = variable.insol,save = F, delete = F, plot.data =TRUE, - save.plots=F, processing = F) - - #, fun ="met") -#-------------------------------------------------------------------------------# -# SERIAL -#-------------------------------------------------------------------------------# -result <- runLPJ(mainDir, settings= settings) -result <- try(runLPJ(mainDir, settings= settings), silent = T) - -suppressMessages(result <- runLPJ(mainDir, settings= settings)) -print(result) - -settings$save <- F -result <- runLPJ(mainDir, settings= settings) - -settings$mode <- "cru" -result <- runLPJ(mainDir, settings= settings) - -settings$mode <- "cf" -design <- getDesign("europe", list = T) -design <- design[1:4] - - -design$run_nyear_spinup <- 410 -settings$design <- design -result <- runLPJ(mainDir, settings= settings) - -design$run_ifcalcsla <- 1 -settings$design <- design -parameterList <- list("C4_gr_include" = 0) -result <- runLPJ(mainDir, settings= settings, parameterList = parameterList) - -settings$design <- NULL -result <- runLPJ(mainDir, settings= settings) - -design <- getDesign("europe", list =T) -design <- design[{1:4}] - -design$run_nyear_spinup <- 410 -settings$design <- design -result <- runLPJ(mainDir, settings= settings) - -#, fun ="met") - - -typeList <- getTypeList() - -result <- runLPJ(mainDir, settings= settings, typeList = typeList) - -parameterList <- getParameterList("europe", list = T) -result <- runLPJ(mainDir, settings= settings, parameterList = parameterList) - -parameterList <- getParameterList("europe", list = F) -result <- runLPJ(mainDir, settings= settings, parameterList = parameterList) - -parameterList <- as.matrix(t(parameterList)) -result <- runLPJ(mainDir, settings= settings, parameterList = parameterList) - -#-------------------------------------------------------------------------------# -# PARALLEL -#-------------------------------------------------------------------------------# -settings$plot.data <- F -# Create some paramaters to test modell. -# Number of runs is proportional to number of parameter set you are testing -parameterDefault <- list (Que_rob_gdd5min_est=NULL) -#parameterDefault <- getParameterList("europe", list = T) -# I want to test 6 different values for emax. -# I want therefore to run 20 time the LPJ -par <- seq(500, 3000, len = 3) -print (par) -# I create the list object with the parameters -parameterList <- vector("list", length(par)) -for (i in 1:length(par)) { - parameterDefault$Que_rob_gdd5min_est <- par[i] - parameterList[[i]] <- parameterDefault -} -#print(parameterList[c(2:3)]) -mySetup <- setupLPJParallel(numCores = 3, clusterType ="SOCK", mainDir = "/home/trashtos/GitHub/lpjRun") - - -proc1 <- proc.time() -result <- runLPJ(mySetup, settings= settings, parameterList = parameterList) -proc.time() - proc1 - - -parameterList <- as.matrix(par) -colnames(parameterList) <- "Que_rob_gdd5min_est" -rownames(parameterList) <- NULL - - -result <- runLPJ(mySetup, settings= settings, parameterList = parameterList) - - - diff --git a/rLPJGUESS/inst/examples/writeTemplateHelp.R b/rLPJGUESS/inst/examples/writeTemplateHelp.R new file mode 100644 index 0000000..5a80608 --- /dev/null +++ b/rLPJGUESS/inst/examples/writeTemplateHelp.R @@ -0,0 +1,8 @@ +\dontrun{ +# Define the parametes to be written +parameterList <- list(run_lamda_max = 0.5, run_emax= 5) + +# write the template +writeTemplate(template1 = "global.ins", parameterList = parameterList, + runDir = "/some/absolute/path/mainDir/runDirectory", check = "serial") +} diff --git a/rLPJGUESS/inst/extdata/outputsForTests/README.md b/rLPJGUESS/inst/extdata/outputsForTests/README.md deleted file mode 100644 index 5c29866..0000000 --- a/rLPJGUESS/inst/extdata/outputsForTests/README.md +++ /dev/null @@ -1,20 +0,0 @@ -# Output files for testing the package - -This folder contains data created with the model. The templates were modificated -to create outputs for different model options: - -- nyear_spinup 250 -- iffire 0 -- npatch 5 -- patcharea 500 -- estinterval 5 -- ifdisturb 0 -- distinterval 50 - - - -The model was run directly without using the package. - -The files are used to compare them against outputs created with model when using -the package for the same options. - diff --git a/rLPJGUESS/inst/extdata/outputsForTests/run_distinterval/europe.ins b/rLPJGUESS/inst/extdata/outputsForTests/run_distinterval/europe.ins deleted file mode 100644 index dc3cda8..0000000 --- a/rLPJGUESS/inst/extdata/outputsForTests/run_distinterval/europe.ins +++ /dev/null @@ -1,1103 +0,0 @@ -!/////////////////////////////////////////////////////////////////////////////////////// -!// LPJ-GUESS INSTRUCTION SCRIPT FOR COHORT/INDIVIDUAL MODE -!// European Species -!// -!// LPJ-GUESS 3.0 -!// -!// Parameter differences with Thomas Hickler's paper: -!// -!// Hickler, T., Vohland, K., Feehan, J., Miller, P., Fronzek, S., Giesecke, T., Kuehn, I., Carter, T., Smith, B. & -!// Sykes, M. Projecting tree species-based climate-driven changes in European potential natural vegetation -!// with a generalized dynamic vegetation model. In press, Global Ecology & Biogeography. -!// -!// are commented with ! THdiff -!/////////////////////////////////////////////////////////////////////////////////////// - - -!/////////////////////////////////////////////////////////////////////////////////////// -! Output files -! - -! outputdirectory is mandatory. Should be "./" for parallel runs. -outputdirectory "/home/ramiro/Github/TestCode/LPJrunTest/runDirectory/outDirectory/" - -! Prefined yearly output -! These files may be outcommented if their output is not required. -file_cmass "cmass.out" -file_anpp "anpp.out" -file_agpp "agpp.out" -file_fpc "fpc.out" -file_aaet "aaet.out" -file_lai "lai.out" -file_cflux "cflux.out" -file_dens "dens.out" -file_runoff "runoff.out" -file_cpool "cpool.out" -file_clitter "clitter.out" -file_firert "firert.out" -file_aiso "aiso.out" -file_amon "amon.out" -file_speciesheights "speciesheight.out" - -file_nmass "nmass.out" -file_cton_leaf "cton_leaf.out" -file_ngases "ngases.out" -file_nsources "nsources.out" -file_npool "npool.out" -file_nlitter "nlitter.out" -file_nuptake "nuptake.out" -file_nflux "nflux.out" -file_vmaxnlim "vmaxnlim.out" - -! Monthly outputs -file_mnpp "mnpp.out" -file_mlai "mlai.out" -file_mrh "mrh.out" -file_mgpp "mgpp.out" -file_mra "mra.out" -file_mnee "mnee.out" -file_maet "maet.out" -file_mpet "mpet.out" -file_mevap "mevap.out" -file_mintercep "mintercep.out" -file_mrunoff "mrunoff.out" -file_mwcont_upper "mwcont_upper.out" -file_mwcont_lower "mwcont_lower.out" -file_miso "miso.out" -file_mmon "mmon.out" - -!/////////////////////////////////////////////////////////////////////////////////////// - - - -!/////////////////////////////////////////////////////////////////////////////////////// -!// RUN PARAMETERS AND OPTIONS -! - -! Settings recognised by Plib -! Run GUESS with -help option for list of keywords and their meanings - -title 'LPJ-GUESS cohort mode - European species' - -vegmode "cohort" ! "cohort", "individual" or "population" -nyear_spinup 500 ! number of years to spin up the simulation for -ifcalcsla 1 ! whether ctonto calculate SLA from leaf longevity - ! (PFT-specific value can be specified in this file instead) -ifcalccton 1 ! whether to calculate leaf C:N min from leaf longevity - ! (PFT-specific value can be specified in this file instead) -iffire 1 ! whether to implement fire (1) or not (0) -npatch 1 ! number of replicate patches to simulate -patcharea 1000 ! patch area (m2) -estinterval 1 ! years between establishment events in cohort mode -ifdisturb 1 ! whether generic patch-destroying disturbances enabled -distinterval 50 ! average return time for generic patch-destroying disturbances - ! Hickler et al. (2011) used 200 -ifbgestab 1 ! whether background establishment enabled -ifsme 1 ! whether spatial mass effect enabled -ifstochestab 1 ! whether establishment stochastic -ifstochmort 1 ! whether mortality stochastic -ifcdebt 1 ! whether to allow vegetation C storage (1) or not (0) -wateruptake "rootdist" ! "wcont", "rootdist", "smart" or "speciesspecific", - ! see documentation for water_uptake() - -!/////////////////////////////////////////////////////////////////////////////// -! PROCESS SETTINGS SPECIFIC TO NITROGEN -!/////////////////////////////////////////////////////////////////////////////// - -ifcentury 1 ! whether to use CENTURY SOM dynamics (mandatory for N cycling) -ifnlim 0 ! whether plant growth limited by available N -freenyears 100 ! number of years to spin up without N limitation (needed to build up a N pool) -nfix_a 0.102 ! first term in N fixation eqn (Conservative 0.102, Central 0.234, Upper 0.367) -nfix_b 0.524 ! second term in N fixation eqn (Conservative 0.524, Central -0.172, Upper -0.754) -nrelocfrac 0.5 ! fraction of N retranslocated prior to leaf and root shedding - - -!/////////////////////////////////////////////////////////////////////////////// -! SERIALIZATION SETTINGS -!/////////////////////////////////////////////////////////////////////////////// -state_year 500 ! year to save/start state file (no setting = after spinup) -restart 0 ! wheter to start from a state file -save_state 0 ! wheter to save a state file -state_path "" ! directory to put state files in - - -ifsmoothgreffmort 1 ! whether to vary mort_greff smoothly with growth efficiency (1) - ! or to use the standard step-function (0) - ! greff_min values below calibrated for the smooth (1) option -ifdroughtlimitedestab 1 ! whether establishment is limited by growing season drought -ifrainonwetdaysonly 1 ! whether to rain on wet days only (1), or to rain a bit every day (0) -ifbvoc 0 ! whether to include BVOC calculations (1) or not (0) - -!!!!!!!!!!!! landcover parameters !!!!!!!!!!!!!! - -run_landcover 0 ! whether to use (and change) landcover fractions (1) or not (0) - -run_urban 0 ! whether to simulate barren land (1) or not (0) -run_crop 1 ! whether to simulate crop vegetation (1) or not (0) -run_forest 0 ! whether to simulate managed forest (1) or not (0) -run_pasture 0 ! whether to simulate pasture (1) or not (0) -run_natural 0 ! whether to simulate natural vegetation (1) or not (0) -run_peatland 1 ! whether to simulate peatland (1) or not (0) - -lcfrac_fixed 0 ! use landcover fractions (%) below (1) or read from input file (0) -lc_fixed_urban 0 ! URBAN -lc_fixed_cropland 50 ! CROPLAND -lc_fixed_pasture 0 ! PASTURE -lc_fixed_forest 0 ! FOREST -lc_fixed_natural 25 ! NATURAL -lc_fixed_peatland 25 ! PEATLAND -equal_landcover_area 0 ! divide gridcell into equal active landcover fractions - -!/////////////////////////////////////////////////////////////////////////////////////// - - -!/////////////////////////////////////////////////////////////////////////////////////// -!// PARAMETERS FOR PFTS -!// Run GUESS with -help option for list of keywords and their meanings - -group "common" ( - - ! Parameters common to all PFTs - - lambda_max 0.8 ! 0.8 - emax 5 ! 5 - reprfrac 0.1 ! 0.1 - wscal_min 0.35 ! 0.35 - drought_tolerance 1e-04 ! 0.0001 - ! default value - ensures that this has little effect even if - ! ifdroughtlimitedestab is turned on - landcover "natural" - turnover_harv_prod 1 ! 1 -) - - -group "tree" ( - - ! Parameters common to all trees - - common - lifeform "tree" - pathway "c3" - rootdist 0.6 0.4 - crownarea_max 40 ! 40 - turnover_root 0.7 ! 0.7 - ltor_max 1 ! 1 - k_allom2 40 ! 40 - k_allom3 0.67 ! 0.67 - k_rp 1.6 ! 1.6 - wooddens 200 ! 200 - cton_root 29 ! 29 - cton_sap 330 ! 330 - nuptoroot 0.0028 ! 0.0028 - km_volume 1.477e-06 ! 0.000001477 - kest_repr 200 ! 200 - kest_bg 0.1 ! 0.1 - kest_pres 1 ! 1 - litterme 0.3 ! 0.3 - harv_eff 0.7 ! 0.7 - res_outtake 0.75 ! 0.75 - harvest_slow_frac 0.33 ! 0.33 - turnover_harv_prod 0.04 ! 0.04 -) - -group "shrub" ( - common - lifeform "tree" - leafphysiognomy "broadleaf" - pathway "c3" - rootdist 0.6 0.4 - crownarea_max 10 ! 10 - turnover_root 0.7 ! 0.7 - ltor_max 1 ! 1 - k_allom1 100 ! 100 - k_allom2 5 ! 5 - k_allom3 0.67 ! 0.67 - k_rp 1.6 ! 1.6 - wooddens 250 ! 250 - cton_root 29 ! 29 - cton_sap 330 ! 330 - nuptoroot 0.0028 ! 0.0028 - km_volume 1.477e-06 ! 0.000001477 - fnstorage 0.3 ! 0.3 - kest_repr 200 ! 200 - kest_bg 0.1 ! 0.1 - kest_pres 1 ! 1 - litterme 0.3 ! 0.3 - longevity 100 ! 100 -) - -group "needle_leaved" ( - leafphysiognomy "needleleaf" - k_allom1 150 ! 150 - k_latosa 4000 ! 4000 - ga 0.14 ! 0.140 -) - -group "broad_leaved" ( - leafphysiognomy "broadleaf" - k_allom1 250 ! 250 - k_latosa 5000 ! 5000 - leaflong 0.5 ! 0.5 - turnover_leaf 1 ! 1 - ga 0.04 ! 0.040 -) - -group "grass" ( - - ! Parameters common to all grasses - - common - lifeform "grass" - leafphysiognomy "broadleaf" - ltor_max 0.5 ! 0.5 - cton_root 29 ! 29 - nuptoroot 0.00551 ! 0.00551 - km_volume 1.876e-06 ! 0.000001876 - fnstorage 0.3 ! 0.3 - respcoeff 1 ! 1.0 - litterme 0.2 ! 0.2 - ga 0.03 ! 0.030 -) - - -! greff_min values below calibrated for the smooth (ifsmoothgreffmort 1) option -! Many THdiff values here -group "shade_tolerant" ( - est_max 0.05 ! 0.05 - parff_min 350000 ! 350000 - alphar 3 ! 3.0 - greff_min 0.04 ! 0.04 - turnover_sap 0.05 ! 0.05 -) - - -! So far only trial values; not in global version -group "intermediate_shade_tolerant" ( - est_max 0.15 ! 0.15 - parff_min 2e+06 ! 2000000 - alphar 7 ! 7.0 - greff_min 0.06 ! 0.06 - turnover_sap 0.075 ! 0.075 -) - - -! From global version; values from orginal European version after "!" -group "shade_intolerant" ( - est_max 0.2 ! 0.2 - parff_min 2500000 ! 2500000 - alphar 10 ! 10.0 - greff_min 0.08 ! 0.08 - turnover_sap 0.1 ! 0.1 -) - - -group "boreal_tree" ( - respcoeff 1 ! 1.0 - pstemp_min -4 ! -4 - pstemp_low 10 ! 10 - pstemp_high 25 ! 25 - pstemp_max 38 ! 38 -) - -group "temperate_tree" ( - respcoeff 1 ! 1.0 - pstemp_min -2 ! -2 - pstemp_low 15 ! 15 - pstemp_high 25 ! 25 - pstemp_max 38 ! 38 -) - - -!/////////////////////////////////////////////////////////////////////////////////////// -! PFTs and species follow -! -! THdiff notes: -! 1. Thomas Hickler didn't give the values used for the tcmax_est and twmin_est parameters -! 2. rootdist is different for (z1 in brackets): Abi_alb (0.8), Bet_pen (0.8), Bet_pub (0.8), Car_bet (0.7), -! Cor_ave (0.7), Fag_syl (0.8), Fra_exc (0.8) - - -pft "Abi_alb" ( - - include 1 ! 1 - tree - shade_tolerant - temperate_tree - needle_leaved - phenology "evergreen" - !sla 9.3 ! 9.3 - gmin 0.3 ! 0.3 - fnstorage 0.05 ! 0.05 - leaflong 3 ! 3 - turnover_leaf 0.33 ! 0.33 - phengdd5ramp 0 ! 0 - tcmin_surv -2 ! -2 - tcmin_est -2 ! -2 - tcmax_est 2 ! 2 - twmin_est 6 ! 6 - gdd5min_est 1600 ! 1600 - k_chilla 0 ! 0 - k_chillb 100 ! 100 - k_chillk 0.05 ! 0.05 - fireresist 0.1 ! 0.1 - intc 0.06 ! 0.06 - longevity 350 ! 350 - drought_tolerance 0.35 ! 0.35 - eps_iso 0.05 ! 0.05 - seas_iso 0 ! 0 - eps_mon 1.8 ! 1.8 - storfrac_mon 0.5 ! 0.5 -) - - -pft "BES" ( - - ! boreal evergreen shrub - - include 1 ! 1 - shrub - boreal_tree - shade_intolerant - rootdist 0.8 0.2 - phenology "evergreen" - crownarea_max 3 ! 3 - k_allom1 20 ! 20 - k_allom2 5 ! 5 - k_latosa 500 ! 500 - !sla 9.3 ! 9.3 - gmin 0.3 ! 0.3 - leaflong 2 ! 2 - turnover_leaf 0.5 ! 0.5 - turnover_sap 0.05 ! 0.05 - phengdd5ramp 0 ! 0 - tcmin_surv -1000 ! -1000 - tcmin_est -1000 ! -1000 - tcmax_est -1 ! -1.0 - twmin_est -1000 ! -1000 - gdd5min_est 200 ! 200 - longevity 50 ! 50 - k_chilla 0 ! 0 - k_chillb 100 ! 100 - k_chillk 0.05 ! 0.05 - fireresist 0.1 ! 0.1 - intc 0.06 ! 0.06 - drought_tolerance 0.25 ! 0.25 - eps_iso 2 ! 2.0 - seas_iso 0 ! 0 - eps_mon 4 ! 4.0 - storfrac_mon 0.5 ! 0.5 - ga 0.04 ! 0.040 -) - - -pft "Bet_pen" ( - - include 1 ! 1 - tree - shade_intolerant - temperate_tree - broad_leaved - phenology "summergreen" - !sla 24.3 ! 24.3 - gmin 0.5 ! 0.5 - fnstorage 0.15 ! 0.15 - phengdd5ramp 200 ! 200 - tcmin_surv -30 ! -30 - tcmin_est -30 ! -30 - tcmax_est 7 ! 7 - twmin_est 5 ! 5 - gdd5min_est 700 ! 700 - k_chilla 0 ! 0 - k_chillb 350 ! 350 - k_chillk 0.05 ! 0.05 - fireresist 0.1 ! 0.1 - intc 0.02 ! 0.02 - longevity 200 ! 200 - drought_tolerance 0.42 ! 0.42 - eps_iso 0.2 ! 0.2 - seas_iso 1 ! 1 - eps_mon 6 ! 6. - storfrac_mon 0 ! 0. -) - - -pft "Bet_pub" ( - - include 1 ! 1 - tree - shade_intolerant - boreal_tree - broad_leaved - phenology "summergreen" - !sla 24.3 ! 24.3 - gmin 0.5 ! 0.5 - fnstorage 0.15 ! 0.15 - phengdd5ramp 200 ! 200 - tcmin_surv -30 ! -30 - tcmin_est -30 ! -30 - tcmax_est 3 ! 3 - twmin_est 5 ! 5 - gdd5min_est 350 ! 350 - k_chilla 0 ! 0 - k_chillb 350 ! 350 - k_chillk 0.05 ! 0.05 - fireresist 0.1 ! 0.1 - intc 0.02 ! 0.02 - longevity 200 ! 200 - drought_tolerance 0.5 ! 0.5 - eps_iso 0 ! 0. - seas_iso 1 ! 1 - eps_mon 1 ! 1.0 - storfrac_mon 0 ! 0. -) - - -pft "Car_bet" ( - - include 1 ! 1 - tree - intermediate_shade_tolerant - temperate_tree - broad_leaved - phenology "summergreen" - !sla 24.3 ! 24.3 - gmin 0.5 ! 0.5 - fnstorage 0.15 ! 0.15 - phengdd5ramp 200 ! 200 - tcmin_surv -8 ! -8 - tcmin_est -8 ! -8 - tcmax_est 5 ! 5 - twmin_est 5 ! 5 - gdd5min_est 1200 ! 1200 - k_chilla 0 ! 0 - k_chillb 600 ! 600 - k_chillk 0.05 ! 0.05 - fireresist 0.1 ! 0.1 - intc 0.02 ! 0.02 - longevity 350 ! 350 - drought_tolerance 0.33 ! 0.33 - eps_iso 0 ! 0. - seas_iso 1 ! 1 - eps_mon 0.08 ! 0.08 - storfrac_mon 0 ! 0. -) - - -pft "Cor_ave" ( - - include 1 ! 1 - tree - crownarea_max 15 - broad_leaved - intermediate_shade_tolerant - temperate_tree - phenology "summergreen" - crownarea_max 15 ! 15 - k_latosa 4000 ! 4000 - !sla 12 ! 12 - gmin 0.5 ! 0.5 - fnstorage 0.15 ! 0.15 - phengdd5ramp 200 ! 200 - tcmin_surv -11 ! -11 - tcmin_est -11 ! -11 - tcmax_est 7 ! 7 - twmin_est 5 ! 5 - gdd5min_est 800 ! 800 - k_chilla 0 ! 0 - k_chillb 350 ! 350 - k_chillk 0.05 ! 0.05 - fireresist 0.1 ! 0.1 - intc 0.02 ! 0.02 - longevity 100 ! 100 - drought_tolerance 0.3 ! 0.3 - eps_iso 0 ! 0. - seas_iso 1 ! 1 - eps_mon 0 ! 0. - storfrac_mon 0 ! 0. -) - - -pft "Fag_syl" ( - - include 1 ! 1 - tree - shade_tolerant - temperate_tree - broad_leaved - phenology "summergreen" - !sla 24.3 ! 24.3 - gmin 0.5 ! 0.5 - fnstorage 0.15 ! 0.15 - phengdd5ramp 200 ! 200 - tcmin_surv -4 ! -4.0 - tcmin_est -3.5 ! -3.5 - tcmax_est 6 ! 6 - twmin_est 5 ! 5 - gdd5min_est 1500 ! 1500 - k_chilla 0 ! 0 - k_chillb 600 ! 600 - k_chillk 0.05 ! 0.05 - fireresist 0.1 ! 0.1 - intc 0.02 ! 0.02 - longevity 500 ! 500 - drought_tolerance 0.3 ! 0.3 - eps_iso 0 ! 0. - seas_iso 1 ! 1 - eps_mon 10 ! 10. - storfrac_mon 0 ! 0. -) - - -pft "Fra_exc" ( - - include 1 ! 1 - tree - intermediate_shade_tolerant - temperate_tree - broad_leaved - phenology "summergreen" - !sla 24.3 ! 24.3 - gmin 0.5 ! 0.5 - fnstorage 0.15 ! 0.15 - phengdd5ramp 200 ! 200 - tcmin_surv -16 ! -16 - tcmin_est -16 ! -16 - tcmax_est 6 ! 6 - twmin_est 5 ! 5 - gdd5min_est 1100 ! 1100 - k_chilla 0 ! 0 - k_chillb 100 ! 100 - k_chillk 0.05 ! 0.05 - fireresist 0.1 ! 0.1 - intc 0.02 ! 0.02 - longevity 350 ! 350 - drought_tolerance 0.4 ! 0.4 - eps_iso 0 ! 0. - seas_iso 1 ! 1 - eps_mon 0 ! 0. - storfrac_mon 0 ! 0. -) - - -pft "Jun_oxy" ( - - ! Thomas Hickler's values - - include 1 ! 1 - tree ! THdiff: - shrub - shade_intolerant - temperate_tree - needle_leaved - rootdist 0.5 0.5 - phenology "evergreen" - k_latosa 1500 ! 1500 - crownarea_max 10 ! 10 - !sla 10 ! 10 - gmin 0.5 ! 0.5 - fnstorage 0.05 ! 0.05 - leaflong 1.5 ! 1.5 - turnover_leaf 0.6667 ! 0.6667 - phengdd5ramp 0 ! 0 - tcmin_surv 0 ! 0 - tcmin_est 1 ! 1 - tcmax_est 1000 ! 1000 - twmin_est -1000 ! -1000 - gdd5min_est 2200 ! 2200 - k_chilla 0 ! 0 - k_chillb 100 ! 100 - k_chillk 0.05 ! 0.05 - fireresist 0.4 ! 0.4 - intc 0.02 ! 0.02 - longevity 200 ! 200 - drought_tolerance 0.01 ! 0.01 - eps_iso 0 ! 0. - seas_iso 0 ! 0 - eps_mon 2 ! 2.0 - storfrac_mon 0.5 ! 0.5 -) - - -pft "MRS" ( - - ! Thomas Hickler's values - ! Mediterranean raingreen low shrub: - ! Cistus, Rosmarinus, Genista, Lavandula, Erica - - include 1 ! 1 - shrub ! THdiff: - has k_allom1 as 250 - shade_intolerant - temperate_tree - rootdist 0.9 0.1 - phenology "raingreen" - k_latosa 1500 ! 1500 - !sla 10 ! 10 - gmin 0.5 ! 0.5 - leaflong 0.5 ! 0.5 - turnover_leaf 1 ! 1 - phengdd5ramp 0 ! 0 - tcmin_surv 0 ! 0 - tcmin_est 1 ! 1 - tcmax_est 1000 ! 1000 - twmin_est -1000 ! -1000 - gdd5min_est 2200 ! 2200 - k_chilla 0 ! 0 - k_chillb 100 ! 100 - k_chillk 0.05 ! 0.05 - fireresist 0.3 ! 0.3 - intc 0.02 ! 0.02 - longevity 100 ! 100 - drought_tolerance 0.01 ! 0.01 - eps_iso 2 ! 2.0 - seas_iso 0 ! 0 - eps_mon 4 ! 4.0 - storfrac_mon 0.5 ! 0.5 - ga 0.04 ! 0.040 -) - - -pft "Pic_abi" ( - - include 1 ! 1 - tree - shade_tolerant - boreal_tree - needle_leaved - rootdist 0.8 0.2 - phenology "evergreen" - !sla 9.3 ! 9.3 - gmin 0.3 ! 0.3 - fnstorage 0.05 ! 0.05 - leaflong 3 ! 3 - turnover_leaf 0.33 ! 0.33 - phengdd5ramp 0 ! 0 - tcmin_surv -30 ! -30 - tcmin_est -30 ! -30 - tcmax_est -1.5 ! -1.5 - twmin_est 5 ! 5 - gdd5min_est 600 ! 600 - k_chilla 0 ! 0 - k_chillb 100 ! 100 - k_chillk 0.05 ! 0.05 - fireresist 0.1 ! 0.1 - intc 0.06 ! 0.06 - longevity 500 ! 500 - drought_tolerance 0.43 ! 0.43 - eps_iso 0.5 ! 0.5 - seas_iso 0 ! 0 - eps_mon 6 ! 6.0 - storfrac_mon 0.5 ! 0.5 -) - - -pft "Pic_sit" ( - - ! Bjarki's values - - include 1 ! 1 - tree - intermediate_shade_tolerant ! Savill's silviculture book - boreal_tree - needle_leaved - rootdist 0.8 0.2 ! ThomasH - phenology "evergreen" - k_latosa 4500 ! 4500 - !sla 9.3 ! 9.3 - gmin 0.3 ! 0.3 - fnstorage 0.05 ! 0.05 - leaflong 4 ! 4 - turnover_leaf 0.25 ! 0.25 - phengdd5ramp 0 ! 0 - tcmin_surv -18 ! -18 - tcmin_est -17 ! -17 - tcmax_est 5.5 ! 5.5 - twmin_est -1000 ! -1000 - gdd5min_est 450 ! 450 - k_chilla 0 ! 0 - k_chillb 100 ! 100 - k_chillk 0.05 ! 0.05 - fireresist 0.1 ! 0.1 - intc 0.06 ! 0.06 - longevity 700 ! 700 - drought_tolerance 0.5 ! 0.5 - eps_iso 0 ! 0. - seas_iso 0 ! 0 - eps_mon 0 ! 0. - storfrac_mon 0.5 ! 0.5 - - ! wooddens 200 - Should be less dens than P. abies (Savill) - ! turnover_sap 0.065 ! Bjarki 30% + abies! -) - - - -pft "Pin_syl" ( - - include 1 ! 1 - tree - intermediate_shade_tolerant - boreal_tree - needle_leaved - phenology "evergreen" - k_latosa 3000 ! 3000 - !sla 9.3 ! 9.3 - gmin 0.3 ! 0.3 - fnstorage 0.05 ! 0.05 - leaflong 2 ! 2 - turnover_leaf 0.5 ! 0.5 - phengdd5ramp 0 ! 0 - tcmin_surv -30 ! -30 - tcmin_est -30 ! -30 - tcmax_est -1 ! -1.0 - twmin_est 5 ! 5 - gdd5min_est 500 ! 500 - k_chilla 0 ! 0 - k_chillb 100 ! 100 - k_chillk 0.05 ! 0.05 - fireresist 0.2 ! 0.2 - intc 0.06 ! 0.06 - longevity 350 ! 350 - drought_tolerance 0.25 ! 0.25 - eps_iso 0 ! 0. - seas_iso 0 ! 0 - eps_mon 4 ! 4.0 - storfrac_mon 0.5 ! 0.5 -) - - -pft "Pin_hal" ( - - ! Thomas Hickler's values - - include 1 ! 1 - tree - shade_intolerant - temperate_tree - needle_leaved - phenology "evergreen" - k_latosa 3000 ! 3000 - !sla 9.3 ! 9.3 - gmin 0.3 ! 0.3 - fnstorage 0.05 ! 0.05 - leaflong 2 ! 2 - turnover_leaf 0.5 ! 0.5 - phengdd5ramp 0 ! 0 - tcmin_surv 3 ! 3 - tcmin_est 3 ! 3 - tcmax_est 9 ! 9 - twmin_est 21 ! 21 - gdd5min_est 3000 ! 3000 - k_chilla 0 ! 0 - k_chillb 100 ! 100 - k_chillk 0.05 ! 0.05 - fireresist 0.2 ! 0.2 - intc 0.06 ! 0.06 - longevity 350 ! 350 - drought_tolerance 0.05 ! 0.05 - eps_iso 0 ! 0. - seas_iso 0 ! 0 - eps_mon 10 ! 10.0 - storfrac_mon 0.5 ! 0.5 -) - - -pft "Pop_tre" ( - - ! Not included in Thomas Hickler's paper - - include 1 ! 1 - tree - shade_intolerant - temperate_tree - broad_leaved - rootdist 0.7 0.3 - phenology "summergreen" - !sla 24.3 ! 24.3 - gmin 0.5 ! 0.5 - fnstorage 0.15 ! 0.15 - phengdd5ramp 200 ! 200 - tcmin_surv -31 ! -31 - tcmin_est -30 ! -30 - tcmax_est 6 ! 6 - twmin_est -1000 ! -1000 - gdd5min_est 500 ! 500 - k_chilla 0 ! 0 - k_chillb 350 ! 350 - k_chillk 0.05 ! 0.05 - fireresist 0.2 ! 0.2 - intc 0.02 ! 0.02 - longevity 160 ! 160 - drought_tolerance 0.4 ! 0.4 - eps_iso 20 ! 20. - seas_iso 1 ! 1 - eps_mon 4 ! 4.0 - storfrac_mon 0 ! 0. -) - - -pft "Que_coc" ( - - ! Thomas Hickler's values - - include 1 ! 1 - shrub ! THdiff: - has k_allom1 as 250 - intermediate_shade_tolerant - temperate_tree - rootdist 0.5 0.5 - phenology "evergreen" - k_latosa 2500 ! 2500 - !sla 10 ! 10 - gmin 0.5 ! 0.5 - leaflong 1.5 ! 1.5 - turnover_leaf 0.6667 ! 0.6667 - phengdd5ramp 0 ! 0 - tcmin_surv 0 ! 0 - tcmin_est 0 ! 0 - tcmax_est 11 ! 11 - twmin_est 21 ! 21 - gdd5min_est 2200 ! 2200 - k_chilla 0 ! 0 - k_chillb 100 ! 100 - k_chillk 0.05 ! 0.05 - fireresist 0.3 ! 0.3 - intc 0.02 ! 0.02 - longevity 350 ! 350 - drought_tolerance 0.1 ! 0.1 - eps_iso 0.1 ! 0.1 - seas_iso 0 ! 0 - eps_mon 10 ! 10.0 - storfrac_mon 0 ! 0. - ga 0.04 ! 0.040 -) - - -pft "Que_ile" ( - - include 1 ! 1 - tree - intermediate_shade_tolerant - temperate_tree - broad_leaved - rootdist 0.5 0.5 - phenology "evergreen" - k_latosa 3000 ! 3000 - !sla 9.3 ! 9.3 - gmin 0.5 ! 0.5 - fnstorage 0.05 ! 0.05 - leaflong 2 ! 2 - turnover_leaf 0.5 ! 0.5 - phengdd5ramp 0 ! 0 - tcmin_surv 3 ! 3 - tcmin_est 3 ! 3 - tcmax_est 7 ! 7 - twmin_est 5 ! 5 - gdd5min_est 1800 ! 1800 - k_chilla 0 ! 0 - k_chillb 100 ! 100 - k_chillk 0.05 ! 0.05 - fireresist 0.3 ! 0.3 - intc 0.02 ! 0.02 - longevity 350 ! 350 - drought_tolerance 0.1 ! 0.1 - eps_iso 0.05 ! 0.05 - seas_iso 0 ! 0 - eps_mon 16 ! 16.0 - storfrac_mon 0 ! 0. -) - - -pft "Que_pub" ( - - ! Thomas Hickler's values - - include 1 ! 1 - tree - intermediate_shade_tolerant - temperate_tree - broad_leaved - phenology "summergreen" - !sla 24.3 ! 24.3 - gmin 0.5 ! 0.5 - fnstorage 0.15 ! 0.15 - phengdd5ramp 200 ! 200 - tcmin_surv -6 ! -6 - tcmin_est -5 ! -5 - tcmax_est 6 ! 6 - twmin_est -1000 ! -1000 - gdd5min_est 1900 ! 1900 - k_chilla 0 ! 0 - k_chillb 100 ! 100 - k_chillk 0.05 ! 0.05 - fireresist 0.2 ! 0.2 - intc 0.02 ! 0.02 - longevity 500 ! 500 - drought_tolerance 0.2 ! 0.2 - eps_iso 50 ! 50.0 - seas_iso 1 ! 1 - eps_mon 0 ! 0. - storfrac_mon 0 ! 0. -) - - -pft "Que_rob" ( - - include 1 ! 1 - tree - intermediate_shade_tolerant - temperate_tree - broad_leaved - phenology "summergreen" - !sla 24.3 ! 24.3 - gmin 0.5 ! 0.5 - fnstorage 0.15 ! 0.15 - phengdd5ramp 200 ! 200 - tcmin_surv -10 ! -10 - tcmin_est -9 ! -9 - tcmax_est 6 ! 6 - twmin_est 5 ! 5 - gdd5min_est 1100 ! 1100 - k_chilla 0 ! 0 - k_chillb 100 ! 100 - k_chillk 0.05 ! 0.05 - fireresist 0.2 ! 0.2 - intc 0.02 ! 0.02 - longevity 500 ! 500 - drought_tolerance 0.25 ! 0.25 - eps_iso 40 ! 40.0 - seas_iso 1 ! 1 - eps_mon 0 ! 0. - storfrac_mon 0 ! 0. -) - - -pft "Til_cor" ( - - include 1 ! 1 - tree - intermediate_shade_tolerant - temperate_tree - broad_leaved - rootdist 0.8 0.2 - phenology "summergreen" - !sla 24.3 ! 24.3 - gmin 0.5 ! 0.5 - fnstorage 0.15 ! 0.15 - phengdd5ramp 200 ! 200 - tcmin_surv -12 ! -12 - tcmin_est -11 ! -11 - tcmax_est 5 ! 5 - twmin_est 5 ! 5 - gdd5min_est 1100 ! 1100 - k_chilla 0 ! 0 - k_chillb 600 ! 600 - k_chillk 0.05 ! 0.05 - fireresist 0.1 ! 0.1 - intc 0.02 ! 0.02 - longevity 350 ! 350 - drought_tolerance 0.33 ! 0.33 - eps_iso 0 ! 0. - seas_iso 1 ! 1 - eps_mon 0 ! 0. - storfrac_mon 0 ! 0. -) - - -pft "Ulm_gla" ( - - ! Not included in Thomas Hickler's paper - - include 1 ! 1 - tree - intermediate_shade_tolerant - temperate_tree - broad_leaved - phenology "summergreen" - !sla 24.3 ! 24.3 - gmin 0.5 ! 0.5 - fnstorage 0.15 ! 0.15 - phengdd5ramp 200 ! 200 - tcmin_surv -10.5 ! -10.5 - tcmin_est -9.5 ! -9.5 - tcmax_est 6 ! 6 - twmin_est 5 ! 5 - gdd5min_est 850 ! 850 - k_chilla 0 ! 0 - k_chillb 100 ! 100 - k_chillk 0.05 ! 0.05 - fireresist 0.1 ! 0.1 - intc 0.02 ! 0.02 - longevity 350 ! 350 - drought_tolerance 0.4 ! 0.4 - eps_iso 0 ! 0. - seas_iso 1 ! 1 - eps_mon 0 ! 0. - storfrac_mon 0 ! 0. -) - - -pft "C3_gr" ( - - include 1 ! 1 - grass - pathway "c3" - rootdist 0.9 0.1 - phenology "any" - !sla 32.4 ! 32.4 - gmin 0.5 ! 0.5 - leaflong 0.5 ! 0.5 - turnover_leaf 1 ! 1 - turnover_root 0.7 ! 0.7 - phengdd5ramp 100 ! 100 - pstemp_min -5 ! -5 - pstemp_low 10 ! 10 - pstemp_high 30 ! 30 - pstemp_max 45 ! 45 - tcmin_surv -1000 ! -1000 - tcmin_est -1000 ! -1000 - tcmax_est 1000 ! 1000 - twmin_est -1000 ! -1000 - gdd5min_est 0 ! 0 - parff_min 2e+06 ! 2000000 - fireresist 0.5 ! 0.5 - intc 0.01 ! 0.01 - drought_tolerance 0.01 ! 0.01 - eps_iso 0 ! 0. - seas_iso 1 ! 1 - eps_mon 1 ! 1.0 - storfrac_mon 0.5 ! 0.5 -) - - -pft "C4_gr" ( - - include 1 ! 1 - grass - pathway "c4" - rootdist 0.9 0.1 - phenology "any" - gmin 0.5 ! 0.5 - leaflong 0.5 ! 0.5 - turnover_leaf 1 ! 1 - turnover_root 0.7 ! 0.7 - phengdd5ramp 100 ! 100 - pstemp_min 6 ! 6 - pstemp_low 20 ! 20 - pstemp_high 45 ! 45 - pstemp_max 55 ! 55 - tcmin_surv 15.5 ! 15.5 - tcmin_est 15.5 ! 15.5 - tcmax_est 1000 ! 1000 - twmin_est -1000 ! -1000 - gdd5min_est 0 ! 0 - parff_min 1e+06 ! 1000000 - fireresist 0.5 ! 0.5 - intc 0.01 ! 0.01 - drought_tolerance 0.01 ! 0.01 - eps_iso 0 ! 0. - seas_iso 1 ! 1 - eps_mon 1 ! 1.0 - storfrac_mon 0.5 ! 0.5 -) - - -! Reference: Savill's silviculture book: -! The Silviculture of Trees used in British Forestry, Peter S. Savill diff --git a/rLPJGUESS/inst/extdata/outputsForTests/run_distinterval/europe_cf.ins b/rLPJGUESS/inst/extdata/outputsForTests/run_distinterval/europe_cf.ins deleted file mode 100644 index b2b4f2f..0000000 --- a/rLPJGUESS/inst/extdata/outputsForTests/run_distinterval/europe_cf.ins +++ /dev/null @@ -1,50 +0,0 @@ -! -! Instruction file with European species to be used with the -! CF I/O module. -! -! Make sure to start LPJ-GUESS with -input cf when using this -! instruction file. -! - -import "/home/ramiro/Github/TestCode/LPJrunTest/runDirectory/europe.ins" - -coordinates_precision 2 - -!/////////////////////////////////////////////////////////////////////////////////////// -! Forcing Data & gridlists -! - -param "file_gridlist" (str "/home/ramiro/Github/TestCode/LPJrunTest/runDirectory/gridlist.txt") - -param "file_co2" (str "/home/ramiro/Github/TestCode/LPJrunTest/crudata/co2_1765-2500_RCP3.txt") -param "file_cru" (str "/home/ramiro/Github/TestCode/LPJrunTest/crudata/cru_1901_2006.bin") -param "file_cru_misc" (str "/home/ramiro/Github/TestCode/LPJrunTest/crudata/cru_1901_2006misc.bin") - -! N deposition (blank string to use constant pre-industrial level of 2 kgN/ha/year) -! type of N deposition time series: either "historic" (default), "rcp26", "rcp45","rcp60","rcp85" as ndep_timeseries in cfinput.cpp -! will work with "GlobalNitrogenDeposition.bin" no matter the value of ndep_timeseries, it will anyway get the right input file -! won´t work with any other RCP ndep file, no matter the value of ndep_timeseries - -param "file_ndep" (str "/home/ramiro/Github/TestCode/LPJrunTest/crudata/GlobalNitrogenDeposition.bin") - - -param "file_temp" (str "/home/ramiro/Github/TestCode/LPJrunTest/temp.nc") -param "variable_temp" (str "temp") - -param "file_prec" (str "/home/ramiro/Github/TestCode/LPJrunTest/prec.nc") -param "variable_prec" (str "prec") - -param "file_insol" (str "/home/ramiro/Github/TestCode/LPJrunTest/rad.nc") -param "variable_insol" (str "rad") - -! Wet days can only be used with monthly precipitation - param "file_wetdays" (str "") -! param "variable_wetdays" (str "_variable_wetdays_") - -! Min/max temp is required for BVOC, -! if BVOC is switched off these can be set to "" - param "file_min_temp" (str "") -! param "variable_min_temp" (str "_variable_min_temp_") - - param "file_max_temp" (str "") -! param "variable_max_temp" (str "_variable_max_temp_") diff --git a/rLPJGUESS/inst/extdata/outputsForTests/run_distinterval/gridlist.txt b/rLPJGUESS/inst/extdata/outputsForTests/run_distinterval/gridlist.txt deleted file mode 100644 index c8ed25d..0000000 --- a/rLPJGUESS/inst/extdata/outputsForTests/run_distinterval/gridlist.txt +++ /dev/null @@ -1 +0,0 @@ -0 Erfurt diff --git a/rLPJGUESS/inst/extdata/outputsForTests/run_distinterval/guess.log b/rLPJGUESS/inst/extdata/outputsForTests/run_distinterval/guess.log deleted file mode 100644 index 575587d..0000000 --- a/rLPJGUESS/inst/extdata/outputsForTests/run_distinterval/guess.log +++ /dev/null @@ -1,13 +0,0 @@ -[LPJ-GUESS Thu Jun 21 19:05:39 2018] - - - --------------------------------------------------- -LPJ-GUESS cohort mode - European species --------------------------------------------------- - -Commencing simulation for gridcell at (10.453,51.0792) -Description: Erfurt -Using soil code and Nitrogen deposition for (10.0,51.0) - -Finished diff --git a/rLPJGUESS/inst/extdata/outputsForTests/run_distinterval/outDirectory/aaet.out b/rLPJGUESS/inst/extdata/outputsForTests/run_distinterval/outDirectory/aaet.out deleted file mode 100644 index 4041b69..0000000 --- a/rLPJGUESS/inst/extdata/outputsForTests/run_distinterval/outDirectory/aaet.out +++ /dev/null @@ -1,63 +0,0 @@ - Lon Lat Year Abi_alb BES Bet_pen Bet_pub Car_bet Cor_ave Fag_syl Fra_exc Jun_oxy MRS Pic_abi Pic_sit Pin_syl Pin_hal Pop_tre Que_coc Que_ile Que_pub Que_rob Til_cor Ulm_gla C3_gr C4_gr Total - 10.45 51.08 1951 0.00 0.00 0.00 296.93 4.91 0.00 30.93 9.51 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 21.74 1.73 8.15 0.00 0.00 373.89 - 10.45 51.08 1952 0.00 0.00 0.00 287.29 4.69 0.00 30.17 7.80 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 20.79 1.56 6.50 0.00 0.00 358.79 - 10.45 51.08 1953 0.00 0.00 0.00 327.80 5.19 0.00 34.58 7.21 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 23.09 1.80 7.21 0.00 0.00 406.88 - 10.45 51.08 1954 0.00 0.00 0.00 267.25 4.41 0.00 29.84 6.14 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 19.66 1.52 6.14 0.00 0.00 334.97 - 10.45 51.08 1955 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 - 10.45 51.08 1956 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 - 10.45 51.08 1957 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 - 10.45 51.08 1958 0.00 1.67 8.54 8.07 3.76 6.05 2.13 5.27 0.00 0.00 0.68 2.80 2.37 0.00 7.88 0.00 0.00 0.00 6.92 5.07 5.11 286.48 0.00 352.79 - 10.45 51.08 1959 0.00 2.25 16.26 16.39 7.26 10.93 4.04 10.15 0.00 0.00 1.04 4.38 3.83 0.00 14.42 0.00 0.00 0.00 13.28 8.94 9.84 219.13 0.00 342.14 - 10.45 51.08 1960 0.00 2.99 25.27 24.80 11.36 16.23 6.28 15.86 0.00 0.00 1.51 6.31 5.26 0.00 22.49 0.00 0.00 0.00 20.82 14.20 15.27 141.93 0.00 330.57 - 10.45 51.08 1961 0.00 3.69 36.01 37.25 16.55 22.64 9.17 23.20 0.00 0.00 2.04 8.43 6.90 0.00 32.76 0.00 0.00 0.00 30.45 20.83 22.33 0.00 0.00 272.23 - 10.45 51.08 1962 0.00 3.66 41.77 44.79 19.69 25.76 10.97 27.58 0.00 0.00 2.17 8.86 7.32 0.00 38.55 0.00 0.00 0.00 36.21 24.43 26.55 0.00 0.00 318.31 - 10.45 51.08 1963 0.00 3.84 49.44 55.17 23.41 29.49 13.13 32.75 0.00 0.00 2.36 9.54 7.93 0.00 45.73 0.00 0.00 0.00 42.99 29.20 31.54 0.00 0.00 376.52 - 10.45 51.08 1964 0.00 3.75 55.13 65.50 26.83 31.59 15.19 37.64 0.00 0.00 2.39 9.42 8.29 0.00 51.08 0.00 0.00 0.00 49.40 32.23 36.28 0.00 0.00 424.71 - 10.45 51.08 1965 0.00 2.86 49.02 63.49 25.55 27.84 14.59 35.94 0.00 0.00 2.12 8.26 7.06 0.00 47.75 0.00 0.00 0.00 47.16 31.21 34.66 0.00 0.00 397.51 - 10.45 51.08 1966 0.00 2.36 54.32 73.39 29.18 30.05 16.85 41.07 0.00 0.00 2.17 8.32 7.30 0.00 53.59 0.00 0.00 0.00 53.89 35.05 38.37 0.00 0.00 445.89 - 10.45 51.08 1967 0.00 1.84 57.87 81.38 31.35 30.32 18.30 44.25 0.00 0.00 2.09 7.78 7.05 0.00 55.25 0.00 0.00 0.00 58.05 36.59 41.36 0.00 0.00 473.47 - 10.45 51.08 1968 0.00 1.07 44.44 75.30 27.82 25.18 16.50 38.06 0.00 0.00 1.73 6.15 5.85 0.00 44.75 0.00 0.00 0.00 52.02 30.67 37.10 0.00 0.00 406.65 - 10.45 51.08 1969 0.00 0.76 47.92 85.48 30.45 24.04 18.26 41.61 0.00 0.00 1.64 4.67 5.77 0.00 45.24 0.00 0.00 0.00 56.42 32.20 40.58 0.00 0.00 435.05 - 10.45 51.08 1970 0.00 0.47 44.87 87.91 30.42 21.65 18.45 41.64 0.00 0.00 1.39 2.82 4.93 0.00 41.45 0.00 0.00 0.00 56.42 31.54 40.64 0.00 0.00 424.58 - 10.45 51.08 1971 0.00 0.00 37.62 75.54 25.62 16.55 15.88 35.60 0.00 0.00 0.93 0.89 3.58 0.00 31.46 0.00 0.00 0.00 48.24 24.84 34.72 0.00 0.00 351.47 - 10.45 51.08 1972 0.00 0.00 44.01 88.75 29.31 14.56 19.20 42.63 0.00 0.00 0.79 0.75 3.35 0.00 33.38 0.00 0.00 0.00 56.38 31.03 41.50 0.00 0.00 405.65 - 10.45 51.08 1973 0.00 0.00 33.90 77.30 23.20 9.85 16.11 35.39 0.00 0.00 0.45 0.37 2.49 0.00 25.80 0.00 0.00 0.00 46.81 23.46 34.42 0.00 0.00 329.54 - 10.45 51.08 1974 0.00 0.00 40.99 102.06 28.88 7.87 21.32 44.81 0.00 0.00 0.01 0.02 2.64 0.00 27.77 0.00 0.00 0.00 58.26 28.01 44.93 0.00 0.00 407.57 - 10.45 51.08 1975 0.00 0.00 39.49 108.12 26.93 6.98 22.36 45.23 0.00 0.00 0.01 0.01 2.17 0.00 26.65 0.00 0.00 0.00 60.83 27.43 43.67 0.00 0.00 409.90 - 10.45 51.08 1976 0.00 0.00 25.76 82.84 19.76 4.32 16.65 33.24 0.00 0.00 0.00 0.01 1.27 0.00 18.69 0.00 0.00 0.00 43.56 19.74 30.95 0.00 0.00 296.77 - 10.45 51.08 1977 0.00 0.00 29.27 105.72 23.55 4.00 21.45 40.57 0.00 0.00 0.00 0.02 0.83 0.00 19.68 0.00 0.00 0.00 52.16 23.34 37.67 0.00 0.00 358.28 - 10.45 51.08 1978 0.00 0.00 25.85 117.09 24.93 2.61 23.05 43.15 0.00 0.00 0.00 0.03 0.00 0.00 17.38 0.00 0.00 0.00 55.48 23.22 40.07 0.00 0.00 372.85 - 10.45 51.08 1979 0.00 0.00 24.67 121.14 25.41 2.34 23.90 44.16 0.00 0.00 0.00 0.02 0.00 0.00 15.22 0.00 0.00 0.00 56.78 22.13 39.43 0.00 0.00 375.19 - 10.45 51.08 1980 0.00 0.00 20.67 126.10 23.86 1.81 24.26 44.25 0.00 0.00 0.00 0.01 0.00 0.00 14.63 0.00 0.00 0.00 55.32 19.15 39.51 0.00 0.00 369.55 - 10.45 51.08 1981 0.00 0.00 21.04 145.83 24.79 1.69 27.36 49.13 0.00 0.00 0.00 0.01 0.00 0.00 13.56 0.00 0.00 0.00 59.65 21.20 43.86 0.00 0.00 408.11 - 10.45 51.08 1982 0.00 0.00 14.57 122.69 19.89 1.00 22.36 38.29 0.00 0.00 0.00 0.00 0.00 0.00 10.24 0.00 0.00 0.00 46.79 15.64 35.45 0.00 0.00 326.92 - 10.45 51.08 1983 0.00 0.00 13.46 156.46 24.06 0.00 27.91 44.71 0.00 0.00 0.00 0.00 0.00 0.00 10.00 0.00 0.00 0.00 53.31 18.62 41.27 0.00 0.00 389.81 - 10.45 51.08 1984 0.00 0.00 10.06 137.80 20.29 0.00 24.07 37.90 0.00 0.00 0.00 0.00 0.00 0.00 7.50 0.00 0.00 0.00 45.19 15.79 33.53 0.00 0.00 332.14 - 10.45 51.08 1985 0.00 0.00 10.38 168.70 23.72 0.00 28.76 41.06 0.00 0.00 0.00 0.00 0.00 0.00 7.53 0.00 0.00 0.00 51.33 17.70 39.35 0.00 0.00 388.54 - 10.45 51.08 1986 0.00 0.00 9.26 180.79 24.27 0.00 30.15 40.43 0.00 0.00 0.00 0.00 0.00 0.00 5.76 0.00 0.00 0.00 50.98 16.60 40.43 0.00 0.00 398.68 - 10.45 51.08 1987 0.00 0.00 5.54 173.64 22.32 0.00 26.12 37.41 0.00 0.00 0.00 0.00 0.00 0.00 4.40 0.00 0.00 0.00 45.54 15.06 37.41 0.00 0.00 367.45 - 10.45 51.08 1988 0.00 0.00 5.60 185.11 23.26 0.00 27.94 37.46 0.00 0.00 0.00 0.00 0.00 0.00 4.30 0.00 0.00 0.00 47.68 14.53 39.17 0.00 0.00 385.06 - 10.45 51.08 1989 0.00 0.00 4.08 173.31 21.23 0.00 26.35 31.32 0.00 0.00 0.00 0.00 0.00 0.00 3.78 0.00 0.00 0.00 40.71 12.61 36.01 0.00 0.00 349.39 - 10.45 51.08 1990 0.00 0.00 4.33 202.56 21.89 0.00 30.06 34.62 0.00 0.00 0.00 0.00 0.00 0.00 3.96 0.00 0.00 0.00 45.01 13.47 39.81 0.00 0.00 395.70 - 10.45 51.08 1991 0.00 0.00 2.08 174.19 17.99 0.00 25.26 28.78 0.00 0.00 0.00 0.00 0.00 0.00 3.17 0.00 0.00 0.00 37.41 10.40 33.10 0.00 0.00 332.37 - 10.45 51.08 1992 0.00 0.00 1.46 206.33 18.41 0.00 28.87 30.35 0.00 0.00 0.00 0.00 0.00 0.00 1.66 0.00 0.00 0.00 41.53 11.14 36.74 0.00 0.00 376.48 - 10.45 51.08 1993 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 - 10.45 51.08 1994 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 - 10.45 51.08 1995 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 - 10.45 51.08 1996 0.00 1.32 6.55 5.28 4.14 3.13 2.14 3.50 0.00 0.00 0.63 1.87 2.03 0.00 5.35 0.00 0.00 3.36 3.09 3.87 6.73 239.39 0.00 292.36 - 10.45 51.08 1997 0.00 2.11 14.00 11.69 9.48 6.33 4.84 7.77 0.00 0.00 1.14 3.45 3.59 0.00 10.83 0.00 0.00 7.35 6.77 8.24 14.44 222.15 0.00 334.18 - 10.45 51.08 1998 0.00 2.68 21.40 18.52 14.62 9.34 7.57 11.90 0.00 0.00 1.61 4.84 5.00 0.00 16.48 0.00 0.00 11.25 10.37 12.68 22.08 165.61 0.00 335.95 - 10.45 51.08 1999 0.00 3.90 37.28 33.23 25.59 15.62 13.30 20.89 0.00 0.00 2.57 7.67 7.77 0.00 28.91 0.00 0.00 19.73 18.18 22.44 38.70 0.00 0.00 295.80 - 10.45 51.08 2000 0.00 3.81 44.32 40.51 30.49 17.69 15.92 24.95 0.00 0.00 2.71 8.02 8.18 0.00 34.13 0.00 0.00 23.58 21.73 25.55 46.28 0.00 0.00 347.88 - 10.45 51.08 2001 0.00 3.63 47.30 46.55 33.99 18.83 17.84 27.92 0.00 0.00 2.73 7.90 8.18 0.00 37.92 0.00 0.00 26.41 23.30 28.45 51.89 0.00 0.00 382.86 - 10.45 51.08 2002 0.00 3.29 47.31 49.58 34.80 18.43 18.39 28.65 0.00 0.00 2.51 7.12 7.44 0.00 38.83 0.00 0.00 27.13 23.93 29.29 53.36 0.00 0.00 390.06 - 10.45 51.08 2003 0.00 3.03 50.19 55.30 37.01 18.57 19.70 30.73 0.00 0.00 2.34 6.35 7.30 0.00 39.75 0.00 0.00 27.99 25.69 29.04 57.36 0.00 0.00 410.33 - 10.45 51.08 2004 0.00 2.59 46.79 53.63 34.69 16.28 18.59 27.69 0.00 0.00 2.15 5.50 6.06 0.00 36.98 0.00 0.00 26.23 24.07 28.54 53.83 0.00 0.00 383.62 - 10.45 51.08 2005 0.00 1.73 48.59 60.89 36.37 17.04 20.93 31.12 0.00 0.00 1.95 4.89 6.19 0.00 36.32 0.00 0.00 29.50 25.86 31.15 60.61 0.00 0.00 413.13 - 10.45 51.08 2006 0.00 1.17 49.83 69.02 39.42 15.77 22.87 33.86 0.00 0.00 1.97 4.06 5.94 0.00 38.18 0.00 0.00 32.14 26.85 34.94 64.80 0.00 0.00 440.82 - 10.45 51.08 2007 0.00 0.60 51.10 77.92 42.56 16.30 25.10 38.58 0.00 0.00 1.78 2.42 5.77 0.00 40.36 0.00 0.00 36.24 30.61 35.61 72.49 0.00 0.00 477.44 - 10.45 51.08 2008 0.00 0.00 43.37 71.64 37.99 13.13 22.70 33.72 0.00 0.00 1.28 1.17 3.97 0.00 27.42 0.00 0.00 31.76 26.46 28.52 63.51 0.00 0.00 406.65 - 10.45 51.08 2009 0.00 0.00 43.78 76.73 38.68 11.31 23.36 31.85 0.00 0.00 1.02 0.80 3.32 0.00 28.33 0.00 0.00 31.26 27.18 29.32 65.24 0.00 0.00 412.17 - 10.45 51.08 2010 0.00 0.00 46.42 86.39 41.32 9.50 25.27 32.80 0.00 0.00 0.00 0.46 2.85 0.00 29.47 0.00 0.00 33.71 29.31 30.22 68.88 0.00 0.00 436.60 - 10.45 51.08 2011 0.00 0.00 43.20 93.60 42.04 7.90 26.14 33.65 0.00 0.00 0.00 0.04 2.04 0.00 28.07 0.00 0.00 34.66 28.63 29.38 69.32 0.00 0.00 438.67 - 10.45 51.08 2012 0.00 0.00 35.56 87.75 35.40 5.67 23.86 30.92 0.00 0.00 0.00 0.10 0.00 0.00 26.01 0.00 0.00 32.00 26.43 28.11 62.61 0.00 0.00 394.42 diff --git a/rLPJGUESS/inst/extdata/outputsForTests/run_distinterval/outDirectory/agpp.out b/rLPJGUESS/inst/extdata/outputsForTests/run_distinterval/outDirectory/agpp.out deleted file mode 100644 index 8333eee..0000000 --- a/rLPJGUESS/inst/extdata/outputsForTests/run_distinterval/outDirectory/agpp.out +++ /dev/null @@ -1,63 +0,0 @@ - Lon Lat Year Abi_alb BES Bet_pen Bet_pub Car_bet Cor_ave Fag_syl Fra_exc Jun_oxy MRS Pic_abi Pic_sit Pin_syl Pin_hal Pop_tre Que_coc Que_ile Que_pub Que_rob Til_cor Ulm_gla C3_gr C4_gr Total - 10.45 51.08 1951 0.000 0.000 0.000 1.023 0.006 0.000 0.057 0.012 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.027 0.002 0.010 0.000 0.000 1.135 - 10.45 51.08 1952 0.000 0.000 0.000 0.990 0.005 0.000 0.054 0.009 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.024 0.002 0.008 0.000 0.000 1.092 - 10.45 51.08 1953 0.000 0.000 0.000 1.095 0.006 0.000 0.061 0.008 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.027 0.002 0.008 0.000 0.000 1.208 - 10.45 51.08 1954 0.000 0.000 0.000 0.957 0.005 0.000 0.055 0.007 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.024 0.001 0.007 0.000 0.000 1.058 - 10.45 51.08 1955 0.000 0.000 0.000 0.917 0.005 0.000 0.055 0.007 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.023 0.001 0.006 0.000 0.000 1.015 - 10.45 51.08 1956 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1957 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1958 0.000 0.015 0.047 0.048 0.021 0.029 0.012 0.029 0.000 0.000 0.005 0.022 0.016 0.000 0.043 0.000 0.000 0.000 0.038 0.028 0.028 0.495 0.000 0.877 - 10.45 51.08 1959 0.000 0.018 0.083 0.093 0.037 0.049 0.021 0.052 0.000 0.000 0.008 0.033 0.024 0.000 0.073 0.000 0.000 0.000 0.069 0.045 0.051 0.230 0.000 0.886 - 10.45 51.08 1960 0.000 0.019 0.114 0.126 0.051 0.061 0.029 0.072 0.000 0.000 0.009 0.040 0.028 0.000 0.100 0.000 0.000 0.000 0.095 0.063 0.070 0.075 0.000 0.951 - 10.45 51.08 1961 0.000 0.017 0.139 0.164 0.065 0.071 0.037 0.091 0.000 0.000 0.010 0.041 0.028 0.000 0.125 0.000 0.000 0.000 0.120 0.079 0.088 0.003 0.000 1.080 - 10.45 51.08 1962 0.000 0.013 0.140 0.183 0.067 0.069 0.039 0.094 0.000 0.000 0.009 0.035 0.025 0.000 0.127 0.000 0.000 0.000 0.124 0.080 0.091 0.000 0.000 1.095 - 10.45 51.08 1963 0.000 0.011 0.153 0.217 0.075 0.071 0.044 0.106 0.000 0.000 0.008 0.032 0.024 0.000 0.138 0.000 0.000 0.000 0.139 0.089 0.103 0.000 0.000 1.209 - 10.45 51.08 1964 0.000 0.009 0.152 0.230 0.077 0.063 0.046 0.110 0.000 0.000 0.007 0.025 0.020 0.000 0.138 0.000 0.000 0.000 0.144 0.087 0.106 0.000 0.000 1.215 - 10.45 51.08 1965 0.000 0.007 0.140 0.248 0.077 0.055 0.047 0.110 0.000 0.000 0.007 0.024 0.020 0.000 0.131 0.000 0.000 0.000 0.144 0.086 0.106 0.000 0.000 1.200 - 10.45 51.08 1966 0.000 0.004 0.149 0.278 0.085 0.055 0.054 0.122 0.000 0.000 0.006 0.018 0.016 0.000 0.142 0.000 0.000 0.000 0.160 0.093 0.114 0.000 0.000 1.298 - 10.45 51.08 1967 0.000 0.004 0.145 0.298 0.084 0.047 0.054 0.122 0.000 0.000 0.006 0.017 0.016 0.000 0.132 0.000 0.000 0.000 0.159 0.090 0.114 0.000 0.000 1.288 - 10.45 51.08 1968 0.000 0.002 0.114 0.298 0.079 0.038 0.052 0.110 0.000 0.000 0.004 0.012 0.011 0.000 0.112 0.000 0.000 0.000 0.149 0.078 0.106 0.000 0.000 1.164 - 10.45 51.08 1969 0.000 0.001 0.117 0.327 0.082 0.035 0.055 0.114 0.000 0.000 0.003 0.007 0.010 0.000 0.106 0.000 0.000 0.000 0.155 0.078 0.111 0.000 0.000 1.199 - 10.45 51.08 1970 0.000 0.001 0.105 0.346 0.080 0.029 0.055 0.113 0.000 0.000 0.003 0.004 0.009 0.000 0.093 0.000 0.000 0.000 0.152 0.073 0.109 0.000 0.000 1.172 - 10.45 51.08 1971 0.000 0.000 0.084 0.296 0.066 0.021 0.046 0.093 0.000 0.000 0.002 0.001 0.007 0.000 0.067 0.000 0.000 0.000 0.127 0.055 0.091 0.000 0.000 0.957 - 10.45 51.08 1972 0.000 0.000 0.102 0.382 0.078 0.020 0.059 0.115 0.000 0.000 0.001 0.001 0.007 0.000 0.073 0.000 0.000 0.000 0.152 0.070 0.112 0.000 0.000 1.171 - 10.45 51.08 1973 0.000 0.000 0.074 0.316 0.058 0.011 0.047 0.091 0.000 0.000 0.001 0.001 0.005 0.000 0.053 0.000 0.000 0.000 0.120 0.051 0.088 0.000 0.000 0.916 - 10.45 51.08 1974 0.000 0.000 0.091 0.445 0.074 0.010 0.064 0.117 0.000 0.000 0.000 0.001 0.005 0.000 0.058 0.000 0.000 0.000 0.153 0.061 0.118 0.000 0.000 1.196 - 10.45 51.08 1975 0.000 0.000 0.080 0.436 0.063 0.008 0.062 0.110 0.000 0.000 0.000 0.000 0.004 0.000 0.051 0.000 0.000 0.000 0.148 0.054 0.106 0.000 0.000 1.122 - 10.45 51.08 1976 0.000 0.000 0.050 0.344 0.046 0.004 0.048 0.081 0.000 0.000 0.000 0.000 0.002 0.000 0.033 0.000 0.000 0.000 0.106 0.037 0.075 0.000 0.000 0.827 - 10.45 51.08 1977 0.000 0.000 0.063 0.487 0.060 0.005 0.067 0.108 0.000 0.000 0.000 0.000 0.001 0.000 0.040 0.000 0.000 0.000 0.138 0.049 0.100 0.000 0.000 1.119 - 10.45 51.08 1978 0.000 0.000 0.051 0.517 0.059 0.003 0.067 0.106 0.000 0.000 0.000 0.000 0.001 0.000 0.032 0.000 0.000 0.000 0.136 0.045 0.098 0.000 0.000 1.114 - 10.45 51.08 1979 0.000 0.000 0.046 0.516 0.057 0.002 0.068 0.104 0.000 0.000 0.000 0.000 0.000 0.000 0.026 0.000 0.000 0.000 0.133 0.041 0.093 0.000 0.000 1.086 - 10.45 51.08 1980 0.000 0.000 0.036 0.542 0.053 0.002 0.068 0.102 0.000 0.000 0.000 0.000 0.000 0.000 0.023 0.000 0.000 0.000 0.128 0.033 0.091 0.000 0.000 1.078 - 10.45 51.08 1981 0.000 0.000 0.036 0.638 0.053 0.002 0.075 0.110 0.000 0.000 0.000 0.000 0.000 0.000 0.021 0.000 0.000 0.000 0.133 0.035 0.098 0.000 0.000 1.202 - 10.45 51.08 1982 0.000 0.000 0.021 0.481 0.038 0.001 0.057 0.076 0.000 0.000 0.000 0.000 0.000 0.000 0.014 0.000 0.000 0.000 0.093 0.023 0.071 0.000 0.000 0.874 - 10.45 51.08 1983 0.000 0.000 0.021 0.628 0.048 0.000 0.074 0.094 0.000 0.000 0.000 0.000 0.000 0.000 0.015 0.000 0.000 0.000 0.113 0.030 0.087 0.000 0.000 1.110 - 10.45 51.08 1984 0.000 0.000 0.017 0.617 0.043 0.000 0.068 0.084 0.000 0.000 0.000 0.000 0.000 0.000 0.011 0.000 0.000 0.000 0.100 0.026 0.074 0.000 0.000 1.040 - 10.45 51.08 1985 0.000 0.000 0.015 0.682 0.045 0.000 0.074 0.081 0.000 0.000 0.000 0.000 0.000 0.000 0.010 0.000 0.000 0.000 0.102 0.025 0.078 0.000 0.000 1.112 - 10.45 51.08 1986 0.000 0.000 0.014 0.746 0.046 0.000 0.077 0.080 0.000 0.000 0.000 0.000 0.000 0.000 0.008 0.000 0.000 0.000 0.101 0.024 0.080 0.000 0.000 1.176 - 10.45 51.08 1987 0.000 0.000 0.008 0.781 0.042 0.000 0.069 0.074 0.000 0.000 0.000 0.000 0.000 0.000 0.006 0.000 0.000 0.000 0.090 0.021 0.074 0.000 0.000 1.165 - 10.45 51.08 1988 0.000 0.000 0.007 0.735 0.038 0.000 0.066 0.066 0.000 0.000 0.000 0.000 0.000 0.000 0.005 0.000 0.000 0.000 0.084 0.019 0.069 0.000 0.000 1.089 - 10.45 51.08 1989 0.000 0.000 0.005 0.725 0.037 0.000 0.066 0.059 0.000 0.000 0.000 0.000 0.000 0.000 0.005 0.000 0.000 0.000 0.076 0.017 0.067 0.000 0.000 1.057 - 10.45 51.08 1990 0.000 0.000 0.006 0.862 0.039 0.000 0.075 0.065 0.000 0.000 0.000 0.000 0.000 0.000 0.005 0.000 0.000 0.000 0.085 0.018 0.075 0.000 0.000 1.230 - 10.45 51.08 1991 0.000 0.000 0.002 0.725 0.028 0.000 0.057 0.048 0.000 0.000 0.000 0.000 0.000 0.000 0.004 0.000 0.000 0.000 0.062 0.012 0.055 0.000 0.000 0.994 - 10.45 51.08 1992 0.000 0.000 0.002 0.784 0.028 0.000 0.063 0.048 0.000 0.000 0.000 0.000 0.000 0.000 0.002 0.000 0.000 0.000 0.066 0.012 0.058 0.000 0.000 1.062 - 10.45 51.08 1993 0.000 0.000 0.001 0.914 0.031 0.000 0.072 0.052 0.000 0.000 0.000 0.000 0.000 0.000 0.001 0.000 0.000 0.000 0.075 0.013 0.066 0.000 0.000 1.226 - 10.45 51.08 1994 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1995 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1996 0.000 0.014 0.043 0.038 0.027 0.018 0.014 0.023 0.000 0.000 0.006 0.018 0.016 0.000 0.035 0.000 0.000 0.022 0.020 0.025 0.044 0.423 0.000 0.786 - 10.45 51.08 1997 0.000 0.019 0.075 0.071 0.050 0.029 0.026 0.041 0.000 0.000 0.009 0.029 0.024 0.000 0.057 0.000 0.000 0.039 0.036 0.044 0.077 0.286 0.000 0.914 - 10.45 51.08 1998 0.000 0.019 0.110 0.109 0.075 0.040 0.039 0.061 0.000 0.000 0.011 0.035 0.029 0.000 0.084 0.000 0.000 0.058 0.054 0.065 0.115 0.069 0.000 0.971 - 10.45 51.08 1999 0.000 0.017 0.143 0.148 0.098 0.048 0.052 0.081 0.000 0.000 0.012 0.037 0.031 0.000 0.110 0.000 0.000 0.077 0.071 0.086 0.152 0.001 0.000 1.164 - 10.45 51.08 2000 0.000 0.014 0.156 0.172 0.108 0.048 0.058 0.089 0.000 0.000 0.012 0.034 0.029 0.000 0.119 0.000 0.000 0.085 0.078 0.090 0.168 0.000 0.000 1.261 - 10.45 51.08 2001 0.000 0.010 0.155 0.195 0.112 0.046 0.061 0.095 0.000 0.000 0.010 0.026 0.024 0.000 0.122 0.000 0.000 0.090 0.079 0.093 0.178 0.000 0.000 1.295 - 10.45 51.08 2002 0.000 0.008 0.147 0.210 0.110 0.040 0.061 0.093 0.000 0.000 0.008 0.021 0.021 0.000 0.118 0.000 0.000 0.089 0.078 0.091 0.176 0.000 0.000 1.273 - 10.45 51.08 2003 0.000 0.008 0.140 0.208 0.106 0.033 0.060 0.090 0.000 0.000 0.008 0.019 0.020 0.000 0.109 0.000 0.000 0.083 0.076 0.082 0.171 0.000 0.000 1.214 - 10.45 51.08 2004 0.000 0.005 0.137 0.226 0.106 0.030 0.061 0.087 0.000 0.000 0.006 0.013 0.014 0.000 0.105 0.000 0.000 0.083 0.076 0.084 0.171 0.000 0.000 1.203 - 10.45 51.08 2005 0.000 0.003 0.138 0.259 0.110 0.030 0.069 0.097 0.000 0.000 0.005 0.010 0.014 0.000 0.099 0.000 0.000 0.092 0.081 0.090 0.191 0.000 0.000 1.287 - 10.45 51.08 2006 0.000 0.002 0.132 0.278 0.112 0.025 0.072 0.099 0.000 0.000 0.004 0.006 0.012 0.000 0.099 0.000 0.000 0.095 0.079 0.094 0.193 0.000 0.000 1.301 - 10.45 51.08 2007 0.000 0.001 0.134 0.327 0.120 0.024 0.080 0.115 0.000 0.000 0.004 0.004 0.013 0.000 0.104 0.000 0.000 0.110 0.092 0.096 0.220 0.000 0.000 1.443 - 10.45 51.08 2008 0.000 0.000 0.108 0.304 0.103 0.017 0.069 0.095 0.000 0.000 0.003 0.002 0.007 0.000 0.068 0.000 0.000 0.091 0.076 0.075 0.182 0.000 0.000 1.201 - 10.45 51.08 2009 0.000 0.000 0.108 0.334 0.105 0.014 0.073 0.091 0.000 0.000 0.002 0.001 0.006 0.000 0.068 0.000 0.000 0.090 0.078 0.075 0.188 0.000 0.000 1.234 - 10.45 51.08 2010 0.000 0.000 0.109 0.385 0.108 0.012 0.076 0.090 0.000 0.000 0.001 0.001 0.004 0.000 0.067 0.000 0.000 0.093 0.081 0.073 0.191 0.000 0.000 1.291 - 10.45 51.08 2011 0.000 0.000 0.099 0.416 0.110 0.009 0.079 0.091 0.000 0.000 0.000 0.000 0.003 0.000 0.062 0.000 0.000 0.095 0.078 0.069 0.190 0.000 0.000 1.302 - 10.45 51.08 2012 0.000 0.000 0.078 0.401 0.090 0.006 0.073 0.083 0.000 0.000 0.000 0.000 0.001 0.000 0.054 0.000 0.000 0.086 0.071 0.062 0.169 0.000 0.000 1.174 diff --git a/rLPJGUESS/inst/extdata/outputsForTests/run_distinterval/outDirectory/aiso.out b/rLPJGUESS/inst/extdata/outputsForTests/run_distinterval/outDirectory/aiso.out deleted file mode 100644 index 7d6e828..0000000 --- a/rLPJGUESS/inst/extdata/outputsForTests/run_distinterval/outDirectory/aiso.out +++ /dev/null @@ -1,63 +0,0 @@ - Lon Lat Year Abi_alb BES Bet_pen Bet_pub Car_bet Cor_ave Fag_syl Fra_exc Jun_oxy MRS Pic_abi Pic_sit Pin_syl Pin_hal Pop_tre Que_coc Que_ile Que_pub Que_rob Til_cor Ulm_gla C3_gr C4_gr Total - 10.45 51.08 1951 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1952 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1953 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1954 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1955 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1956 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1957 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1958 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1959 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1960 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1961 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1962 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1963 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1964 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1965 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1966 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1967 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1968 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1969 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1970 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1971 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1972 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1973 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1974 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1975 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1976 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1977 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1978 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1979 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1980 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1981 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1982 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1983 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1984 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1985 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1986 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1987 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1988 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1989 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1990 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1991 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1992 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1993 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1994 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1995 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1996 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1997 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1998 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1999 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 2000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 2001 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 2002 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 2003 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 2004 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 2005 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 2006 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 2007 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 2008 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 2009 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 2010 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 2011 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 2012 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 diff --git a/rLPJGUESS/inst/extdata/outputsForTests/run_distinterval/outDirectory/amon.out b/rLPJGUESS/inst/extdata/outputsForTests/run_distinterval/outDirectory/amon.out deleted file mode 100644 index 7d6e828..0000000 --- a/rLPJGUESS/inst/extdata/outputsForTests/run_distinterval/outDirectory/amon.out +++ /dev/null @@ -1,63 +0,0 @@ - Lon Lat Year Abi_alb BES Bet_pen Bet_pub Car_bet Cor_ave Fag_syl Fra_exc Jun_oxy MRS Pic_abi Pic_sit Pin_syl Pin_hal Pop_tre Que_coc Que_ile Que_pub Que_rob Til_cor Ulm_gla C3_gr C4_gr Total - 10.45 51.08 1951 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1952 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1953 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1954 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1955 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1956 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1957 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1958 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1959 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1960 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1961 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1962 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1963 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1964 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1965 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1966 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1967 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1968 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1969 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1970 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1971 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1972 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1973 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1974 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1975 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1976 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1977 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1978 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1979 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1980 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1981 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1982 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1983 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1984 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1985 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1986 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1987 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1988 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1989 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1990 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1991 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1992 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1993 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1994 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1995 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1996 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1997 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1998 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1999 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 2000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 2001 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 2002 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 2003 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 2004 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 2005 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 2006 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 2007 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 2008 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 2009 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 2010 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 2011 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 2012 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 diff --git a/rLPJGUESS/inst/extdata/outputsForTests/run_distinterval/outDirectory/anpp.out b/rLPJGUESS/inst/extdata/outputsForTests/run_distinterval/outDirectory/anpp.out deleted file mode 100644 index b44de39..0000000 --- a/rLPJGUESS/inst/extdata/outputsForTests/run_distinterval/outDirectory/anpp.out +++ /dev/null @@ -1,63 +0,0 @@ - Lon Lat Year Abi_alb BES Bet_pen Bet_pub Car_bet Cor_ave Fag_syl Fra_exc Jun_oxy MRS Pic_abi Pic_sit Pin_syl Pin_hal Pop_tre Que_coc Que_ile Que_pub Que_rob Til_cor Ulm_gla C3_gr C4_gr Total - 10.45 51.08 1951 0.000 0.000 0.000 0.521 0.003 0.000 0.028 0.006 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.013 0.001 0.005 0.000 0.000 0.577 - 10.45 51.08 1952 0.000 0.000 0.000 0.494 0.002 0.000 0.026 0.004 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.012 0.001 0.004 0.000 0.000 0.543 - 10.45 51.08 1953 0.000 0.000 0.000 0.547 0.003 0.000 0.030 0.004 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.013 0.001 0.004 0.000 0.000 0.603 - 10.45 51.08 1954 0.000 0.000 0.000 0.476 0.002 0.000 0.027 0.004 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.012 0.001 0.004 0.000 0.000 0.525 - 10.45 51.08 1955 0.000 0.000 0.000 0.467 0.002 0.000 0.027 0.004 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.011 0.001 0.003 0.000 0.000 0.514 - 10.45 51.08 1956 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1957 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1958 0.000 0.010 0.033 0.034 0.015 0.020 0.008 0.020 0.000 0.000 0.003 0.014 0.010 0.000 0.030 0.000 0.000 0.000 0.027 0.020 0.020 0.235 0.000 0.499 - 10.45 51.08 1959 0.000 0.011 0.057 0.064 0.026 0.033 0.014 0.036 0.000 0.000 0.005 0.020 0.015 0.000 0.050 0.000 0.000 0.000 0.047 0.030 0.035 0.066 0.000 0.509 - 10.45 51.08 1960 0.000 0.011 0.076 0.085 0.034 0.040 0.019 0.048 0.000 0.000 0.006 0.024 0.017 0.000 0.067 0.000 0.000 0.000 0.063 0.042 0.047 -0.001 0.000 0.578 - 10.45 51.08 1961 0.000 0.009 0.090 0.107 0.042 0.045 0.024 0.059 0.000 0.000 0.006 0.023 0.016 0.000 0.081 0.000 0.000 0.000 0.077 0.051 0.057 -0.004 0.000 0.682 - 10.45 51.08 1962 0.000 0.006 0.088 0.118 0.042 0.042 0.025 0.060 0.000 0.000 0.005 0.018 0.014 0.000 0.080 0.000 0.000 0.000 0.078 0.051 0.058 0.000 0.000 0.684 - 10.45 51.08 1963 0.000 0.004 0.093 0.136 0.046 0.041 0.027 0.065 0.000 0.000 0.004 0.015 0.013 0.000 0.084 0.000 0.000 0.000 0.085 0.054 0.063 0.000 0.000 0.732 - 10.45 51.08 1964 0.000 0.003 0.089 0.138 0.045 0.034 0.027 0.064 0.000 0.000 0.003 0.010 0.009 0.000 0.080 0.000 0.000 0.000 0.084 0.050 0.062 0.000 0.000 0.697 - 10.45 51.08 1965 0.000 0.003 0.082 0.152 0.045 0.030 0.028 0.064 0.000 0.000 0.003 0.010 0.010 0.000 0.076 0.000 0.000 0.000 0.085 0.050 0.062 0.000 0.000 0.700 - 10.45 51.08 1966 0.000 0.001 0.086 0.167 0.049 0.029 0.031 0.071 0.000 0.000 0.002 0.007 0.007 0.000 0.081 0.000 0.000 0.000 0.093 0.053 0.066 0.000 0.000 0.743 - 10.45 51.08 1967 0.000 0.001 0.080 0.174 0.046 0.022 0.030 0.067 0.000 0.000 0.002 0.006 0.007 0.000 0.072 0.000 0.000 0.000 0.088 0.048 0.063 0.000 0.000 0.709 - 10.45 51.08 1968 0.000 0.000 0.061 0.171 0.042 0.017 0.028 0.059 0.000 0.000 0.001 0.003 0.004 0.000 0.059 0.000 0.000 0.000 0.080 0.041 0.057 0.000 0.000 0.624 - 10.45 51.08 1969 0.000 0.000 0.063 0.189 0.044 0.016 0.030 0.062 0.000 0.000 0.001 0.002 0.004 0.000 0.056 0.000 0.000 0.000 0.085 0.041 0.060 0.000 0.000 0.654 - 10.45 51.08 1970 0.000 0.000 0.057 0.201 0.044 0.013 0.030 0.061 0.000 0.000 0.001 0.001 0.004 0.000 0.050 0.000 0.000 0.000 0.083 0.038 0.059 0.000 0.000 0.642 - 10.45 51.08 1971 0.000 0.000 0.038 0.153 0.031 0.007 0.021 0.044 0.000 0.000 0.001 0.000 0.003 0.000 0.030 0.000 0.000 0.000 0.059 0.024 0.042 0.000 0.000 0.453 - 10.45 51.08 1972 0.000 0.000 0.057 0.230 0.043 0.010 0.033 0.065 0.000 0.000 0.001 0.000 0.003 0.000 0.040 0.000 0.000 0.000 0.085 0.039 0.063 0.000 0.000 0.668 - 10.45 51.08 1973 0.000 0.000 0.035 0.167 0.028 0.004 0.022 0.043 0.000 0.000 0.000 0.000 0.002 0.000 0.025 0.000 0.000 0.000 0.057 0.023 0.042 0.000 0.000 0.450 - 10.45 51.08 1974 0.000 0.000 0.051 0.269 0.042 0.005 0.036 0.066 0.000 0.000 0.000 0.000 0.002 0.000 0.033 0.000 0.000 0.000 0.086 0.034 0.067 0.000 0.000 0.692 - 10.45 51.08 1975 0.000 0.000 0.042 0.250 0.033 0.004 0.033 0.059 0.000 0.000 0.000 0.000 0.002 0.000 0.027 0.000 0.000 0.000 0.079 0.028 0.057 0.000 0.000 0.615 - 10.45 51.08 1976 0.000 0.000 0.020 0.167 0.019 0.001 0.020 0.034 0.000 0.000 0.000 0.000 0.001 0.000 0.013 0.000 0.000 0.000 0.045 0.015 0.032 0.000 0.000 0.368 - 10.45 51.08 1977 0.000 0.000 0.035 0.287 0.033 0.003 0.037 0.060 0.000 0.000 0.000 0.000 0.001 0.000 0.022 0.000 0.000 0.000 0.077 0.027 0.055 0.000 0.000 0.637 - 10.45 51.08 1978 0.000 0.000 0.028 0.308 0.033 0.001 0.038 0.060 0.000 0.000 0.000 0.000 0.000 0.000 0.018 0.000 0.000 0.000 0.077 0.025 0.055 0.000 0.000 0.643 - 10.45 51.08 1979 0.000 0.000 0.025 0.299 0.031 0.001 0.037 0.057 0.000 0.000 0.000 0.000 0.000 0.000 0.014 0.000 0.000 0.000 0.073 0.022 0.051 0.000 0.000 0.608 - 10.45 51.08 1980 0.000 0.000 0.019 0.313 0.029 0.001 0.037 0.056 0.000 0.000 0.000 0.000 0.000 0.000 0.012 0.000 0.000 0.000 0.069 0.017 0.050 0.000 0.000 0.602 - 10.45 51.08 1981 0.000 0.000 0.019 0.369 0.028 0.001 0.041 0.059 0.000 0.000 0.000 0.000 0.000 0.000 0.011 0.000 0.000 0.000 0.072 0.019 0.053 0.000 0.000 0.672 - 10.45 51.08 1982 0.000 0.000 0.007 0.215 0.015 0.000 0.023 0.029 0.000 0.000 0.000 0.000 0.000 0.000 0.005 0.000 0.000 0.000 0.036 0.007 0.027 0.000 0.000 0.365 - 10.45 51.08 1983 0.000 0.000 0.010 0.338 0.024 0.000 0.037 0.048 0.000 0.000 0.000 0.000 0.000 0.000 0.007 0.000 0.000 0.000 0.057 0.014 0.044 0.000 0.000 0.579 - 10.45 51.08 1984 0.000 0.000 0.009 0.346 0.022 0.000 0.036 0.044 0.000 0.000 0.000 0.000 0.000 0.000 0.006 0.000 0.000 0.000 0.052 0.013 0.039 0.000 0.000 0.567 - 10.45 51.08 1985 0.000 0.000 0.008 0.382 0.023 0.000 0.039 0.043 0.000 0.000 0.000 0.000 0.000 0.000 0.005 0.000 0.000 0.000 0.054 0.013 0.041 0.000 0.000 0.608 - 10.45 51.08 1986 0.000 0.000 0.007 0.419 0.024 0.000 0.041 0.042 0.000 0.000 0.000 0.000 0.000 0.000 0.004 0.000 0.000 0.000 0.053 0.012 0.042 0.000 0.000 0.643 - 10.45 51.08 1987 0.000 0.000 0.004 0.447 0.022 0.000 0.037 0.039 0.000 0.000 0.000 0.000 0.000 0.000 0.003 0.000 0.000 0.000 0.047 0.011 0.039 0.000 0.000 0.649 - 10.45 51.08 1988 0.000 0.000 0.003 0.382 0.018 0.000 0.032 0.031 0.000 0.000 0.000 0.000 0.000 0.000 0.002 0.000 0.000 0.000 0.039 0.008 0.032 0.000 0.000 0.548 - 10.45 51.08 1989 0.000 0.000 0.002 0.362 0.016 0.000 0.030 0.027 0.000 0.000 0.000 0.000 0.000 0.000 0.002 0.000 0.000 0.000 0.034 0.007 0.030 0.000 0.000 0.512 - 10.45 51.08 1990 0.000 0.000 0.003 0.467 0.019 0.000 0.038 0.033 0.000 0.000 0.000 0.000 0.000 0.000 0.002 0.000 0.000 0.000 0.043 0.009 0.038 0.000 0.000 0.652 - 10.45 51.08 1991 0.000 0.000 0.001 0.354 0.011 0.000 0.024 0.020 0.000 0.000 0.000 0.000 0.000 0.000 0.001 0.000 0.000 0.000 0.026 0.005 0.023 0.000 0.000 0.464 - 10.45 51.08 1992 0.000 0.000 0.001 0.397 0.012 0.000 0.029 0.022 0.000 0.000 0.000 0.000 0.000 0.000 0.001 0.000 0.000 0.000 0.030 0.005 0.026 0.000 0.000 0.522 - 10.45 51.08 1993 0.000 0.000 0.000 0.508 0.016 0.000 0.038 0.027 0.000 0.000 0.000 0.000 0.000 0.000 0.001 0.000 0.000 0.000 0.039 0.007 0.035 0.000 0.000 0.671 - 10.45 51.08 1994 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1995 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1996 0.000 0.009 0.030 0.027 0.019 0.013 0.010 0.016 0.000 0.000 0.004 0.011 0.010 0.000 0.025 0.000 0.000 0.015 0.014 0.018 0.031 0.190 0.000 0.443 - 10.45 51.08 1997 0.000 0.012 0.051 0.049 0.035 0.020 0.018 0.028 0.000 0.000 0.006 0.018 0.016 0.000 0.039 0.000 0.000 0.027 0.025 0.030 0.053 0.115 0.000 0.542 - 10.45 51.08 1998 0.000 0.011 0.073 0.073 0.050 0.026 0.026 0.041 0.000 0.000 0.007 0.020 0.018 0.000 0.056 0.000 0.000 0.039 0.036 0.043 0.077 -0.025 0.000 0.572 - 10.45 51.08 1999 0.000 0.009 0.093 0.097 0.064 0.030 0.034 0.053 0.000 0.000 0.007 0.020 0.017 0.000 0.071 0.000 0.000 0.050 0.046 0.055 0.099 -0.001 0.000 0.744 - 10.45 51.08 2000 0.000 0.006 0.097 0.108 0.066 0.028 0.036 0.055 0.000 0.000 0.006 0.017 0.016 0.000 0.074 0.000 0.000 0.052 0.048 0.055 0.104 0.000 0.000 0.768 - 10.45 51.08 2001 0.000 0.003 0.093 0.120 0.067 0.026 0.037 0.057 0.000 0.000 0.004 0.011 0.011 0.000 0.073 0.000 0.000 0.054 0.048 0.055 0.107 0.000 0.000 0.766 - 10.45 51.08 2002 0.000 0.002 0.084 0.126 0.063 0.021 0.035 0.053 0.000 0.000 0.004 0.008 0.009 0.000 0.067 0.000 0.000 0.051 0.045 0.052 0.101 0.000 0.000 0.721 - 10.45 51.08 2003 0.000 0.002 0.074 0.116 0.056 0.015 0.032 0.048 0.000 0.000 0.003 0.007 0.008 0.000 0.057 0.000 0.000 0.044 0.040 0.042 0.091 0.000 0.000 0.633 - 10.45 51.08 2004 0.000 0.001 0.073 0.128 0.056 0.014 0.032 0.046 0.000 0.000 0.002 0.003 0.005 0.000 0.055 0.000 0.000 0.044 0.040 0.044 0.091 0.000 0.000 0.635 - 10.45 51.08 2005 0.000 0.001 0.075 0.151 0.060 0.014 0.038 0.053 0.000 0.000 0.002 0.003 0.005 0.000 0.054 0.000 0.000 0.051 0.045 0.049 0.106 0.000 0.000 0.705 - 10.45 51.08 2006 0.000 0.000 0.070 0.156 0.059 0.011 0.038 0.053 0.000 0.000 0.001 0.001 0.004 0.000 0.052 0.000 0.000 0.050 0.042 0.049 0.102 0.000 0.000 0.689 - 10.45 51.08 2007 0.000 0.000 0.075 0.193 0.066 0.011 0.044 0.065 0.000 0.000 0.002 0.001 0.006 0.000 0.058 0.000 0.000 0.062 0.052 0.052 0.124 0.000 0.000 0.811 - 10.45 51.08 2008 0.000 0.000 0.054 0.167 0.052 0.007 0.035 0.048 0.000 0.000 0.001 0.000 0.002 0.000 0.034 0.000 0.000 0.046 0.038 0.036 0.092 0.000 0.000 0.613 - 10.45 51.08 2009 0.000 0.000 0.055 0.185 0.053 0.005 0.037 0.046 0.000 0.000 0.001 0.000 0.002 0.000 0.034 0.000 0.000 0.046 0.040 0.037 0.095 0.000 0.000 0.636 - 10.45 51.08 2010 0.000 0.000 0.058 0.226 0.058 0.005 0.041 0.049 0.000 0.000 0.000 0.000 0.002 0.000 0.036 0.000 0.000 0.051 0.044 0.038 0.103 0.000 0.000 0.711 - 10.45 51.08 2011 0.000 0.000 0.050 0.233 0.056 0.003 0.040 0.047 0.000 0.000 0.000 0.000 0.001 0.000 0.031 0.000 0.000 0.049 0.040 0.033 0.097 0.000 0.000 0.681 - 10.45 51.08 2012 0.000 0.000 0.037 0.215 0.043 0.002 0.035 0.040 0.000 0.000 0.000 0.000 0.000 0.000 0.025 0.000 0.000 0.041 0.034 0.028 0.081 0.000 0.000 0.581 diff --git a/rLPJGUESS/inst/extdata/outputsForTests/run_distinterval/outDirectory/cflux.out b/rLPJGUESS/inst/extdata/outputsForTests/run_distinterval/outDirectory/cflux.out deleted file mode 100644 index 47fa77a..0000000 --- a/rLPJGUESS/inst/extdata/outputsForTests/run_distinterval/outDirectory/cflux.out +++ /dev/null @@ -1,63 +0,0 @@ - Lon Lat Year Veg Repr Soil Fire Est NEE - 10.45 51.08 1951 -0.577 0.058 0.353 0.005 0.000 -0.16201 - 10.45 51.08 1952 -0.543 0.054 0.366 0.027 0.000 -0.09572 - 10.45 51.08 1953 -0.603 0.060 0.416 0.025 0.000 -0.10147 - 10.45 51.08 1954 -0.525 0.052 0.338 0.016 0.000 -0.11749 - 10.45 51.08 1955 -0.514 0.051 0.324 0.004 0.000 -0.13545 - 10.45 51.08 1956 0.000 -0.000 0.560 0.012 0.000 0.57166 - 10.45 51.08 1957 0.000 -0.000 0.500 0.011 -0.466 0.04506 - 10.45 51.08 1958 -0.499 0.050 0.566 0.044 -0.007 0.15434 - 10.45 51.08 1959 -0.509 0.051 0.761 0.093 -0.002 0.39436 - 10.45 51.08 1960 -0.578 0.058 0.630 0.066 0.000 0.17676 - 10.45 51.08 1961 -0.682 0.069 0.663 0.075 0.000 0.12436 - 10.45 51.08 1962 -0.684 0.068 0.548 0.075 0.000 0.00730 - 10.45 51.08 1963 -0.732 0.073 0.541 0.031 0.000 -0.08756 - 10.45 51.08 1964 -0.697 0.070 0.634 0.070 0.000 0.07625 - 10.45 51.08 1965 -0.700 0.070 0.539 0.053 0.000 -0.03866 - 10.45 51.08 1966 -0.743 0.074 0.567 0.031 0.000 -0.07006 - 10.45 51.08 1967 -0.709 0.071 0.648 0.053 0.000 0.06323 - 10.45 51.08 1968 -0.624 0.062 0.621 0.061 0.000 0.12159 - 10.45 51.08 1969 -0.654 0.065 0.555 0.041 0.000 0.00768 - 10.45 51.08 1970 -0.642 0.064 0.549 0.045 0.000 0.01566 - 10.45 51.08 1971 -0.453 0.045 0.637 0.058 0.000 0.28728 - 10.45 51.08 1972 -0.668 0.067 0.472 0.007 0.000 -0.12330 - 10.45 51.08 1973 -0.450 0.045 0.594 0.054 0.000 0.24404 - 10.45 51.08 1974 -0.692 0.069 0.531 0.013 0.000 -0.07864 - 10.45 51.08 1975 -0.615 0.061 0.604 0.046 0.000 0.09630 - 10.45 51.08 1976 -0.368 0.037 0.576 0.054 0.000 0.29866 - 10.45 51.08 1977 -0.637 0.064 0.428 0.022 0.000 -0.12345 - 10.45 51.08 1978 -0.643 0.064 0.504 0.042 0.000 -0.03298 - 10.45 51.08 1979 -0.608 0.061 0.509 0.041 0.000 0.00273 - 10.45 51.08 1980 -0.602 0.060 0.491 0.047 0.000 -0.00412 - 10.45 51.08 1981 -0.672 0.067 0.443 0.008 0.000 -0.15329 - 10.45 51.08 1982 -0.365 0.036 0.590 0.049 0.000 0.31055 - 10.45 51.08 1983 -0.579 0.058 0.531 0.047 0.000 0.05628 - 10.45 51.08 1984 -0.567 0.057 0.373 0.005 0.000 -0.13218 - 10.45 51.08 1985 -0.608 0.061 0.513 0.055 0.000 0.02161 - 10.45 51.08 1986 -0.643 0.064 0.445 0.033 0.000 -0.10095 - 10.45 51.08 1987 -0.649 0.065 0.360 0.005 0.000 -0.21938 - 10.45 51.08 1988 -0.548 0.055 0.530 0.048 0.000 0.08463 - 10.45 51.08 1989 -0.512 0.051 0.529 0.040 0.000 0.10746 - 10.45 51.08 1990 -0.652 0.065 0.495 0.038 0.000 -0.05453 - 10.45 51.08 1991 -0.464 0.046 0.476 0.043 0.000 0.10173 - 10.45 51.08 1992 -0.522 0.052 0.479 0.034 0.000 0.04307 - 10.45 51.08 1993 -0.671 0.067 0.378 0.018 0.000 -0.20777 - 10.45 51.08 1994 0.000 -0.000 0.719 0.009 0.000 0.72751 - 10.45 51.08 1995 0.000 -0.000 0.455 0.009 -0.478 -0.01366 - 10.45 51.08 1996 -0.443 0.044 0.388 0.008 -0.006 -0.00767 - 10.45 51.08 1997 -0.542 0.054 0.652 0.066 -0.001 0.22899 - 10.45 51.08 1998 -0.572 0.060 0.631 0.050 -0.000 0.16800 - 10.45 51.08 1999 -0.744 0.074 0.619 0.009 0.000 -0.04043 - 10.45 51.08 2000 -0.768 0.077 0.601 0.052 0.000 -0.03823 - 10.45 51.08 2001 -0.766 0.077 0.555 0.033 0.000 -0.10113 - 10.45 51.08 2002 -0.721 0.072 0.503 0.006 0.000 -0.13935 - 10.45 51.08 2003 -0.633 0.063 0.698 0.052 0.000 0.18008 - 10.45 51.08 2004 -0.635 0.063 0.607 0.050 0.000 0.08663 - 10.45 51.08 2005 -0.705 0.071 0.659 0.049 0.000 0.07270 - 10.45 51.08 2006 -0.689 0.069 0.659 0.044 0.000 0.08213 - 10.45 51.08 2007 -0.811 0.081 0.555 0.023 0.000 -0.15107 - 10.45 51.08 2008 -0.613 0.061 0.622 0.045 0.000 0.11536 - 10.45 51.08 2009 -0.636 0.064 0.590 0.038 0.000 0.05576 - 10.45 51.08 2010 -0.711 0.071 0.485 0.025 0.000 -0.13028 - 10.45 51.08 2011 -0.681 0.068 0.639 0.047 0.000 0.07356 - 10.45 51.08 2012 -0.581 0.058 0.601 0.040 0.000 0.11827 diff --git a/rLPJGUESS/inst/extdata/outputsForTests/run_distinterval/outDirectory/clitter.out b/rLPJGUESS/inst/extdata/outputsForTests/run_distinterval/outDirectory/clitter.out deleted file mode 100644 index 5503174..0000000 --- a/rLPJGUESS/inst/extdata/outputsForTests/run_distinterval/outDirectory/clitter.out +++ /dev/null @@ -1,63 +0,0 @@ - Lon Lat Year Abi_alb BES Bet_pen Bet_pub Car_bet Cor_ave Fag_syl Fra_exc Jun_oxy MRS Pic_abi Pic_sit Pin_syl Pin_hal Pop_tre Que_coc Que_ile Que_pub Que_rob Til_cor Ulm_gla C3_gr C4_gr Total - 10.45 51.08 1951 0.000 0.000 0.000 0.185 0.002 0.000 0.017 0.027 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.008 0.001 0.027 0.000 0.000 0.266 - 10.45 51.08 1952 0.000 0.000 0.000 0.187 0.002 0.000 0.017 0.027 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.008 0.001 0.003 0.000 0.000 0.243 - 10.45 51.08 1953 0.000 0.000 0.000 0.570 0.002 0.000 0.017 0.003 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.008 0.001 0.003 0.000 0.000 0.602 - 10.45 51.08 1954 0.000 0.000 0.000 0.576 0.002 0.000 0.017 0.003 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.008 0.001 0.026 0.000 0.000 0.633 - 10.45 51.08 1955 0.000 0.000 0.000 8.270 0.096 0.000 0.411 0.123 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.392 0.050 0.098 0.000 0.000 9.441 - 10.45 51.08 1956 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1957 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1958 0.000 0.002 0.006 0.007 0.003 0.004 0.001 0.004 0.000 0.000 0.001 0.004 0.003 0.000 0.005 0.000 0.000 0.000 0.005 0.003 0.004 0.244 0.000 0.294 - 10.45 51.08 1959 0.000 0.003 0.012 0.018 0.005 0.007 0.003 0.007 0.000 0.000 0.002 0.007 0.004 0.000 0.011 0.000 0.000 0.000 0.009 0.007 0.007 0.218 0.000 0.318 - 10.45 51.08 1960 0.000 0.004 0.022 0.020 0.009 0.011 0.005 0.013 0.000 0.000 0.002 0.010 0.006 0.000 0.018 0.000 0.000 0.000 0.016 0.011 0.012 0.090 0.000 0.249 - 10.45 51.08 1961 0.000 0.004 0.031 0.030 0.013 0.015 0.007 0.018 0.000 0.000 0.003 0.013 0.008 0.000 0.025 0.000 0.000 0.000 0.023 0.016 0.017 0.018 0.000 0.239 - 10.45 51.08 1962 0.000 0.005 0.034 0.038 0.017 0.018 0.009 0.023 0.000 0.000 0.003 0.014 0.009 0.000 0.032 0.000 0.000 0.000 0.030 0.021 0.022 0.000 0.000 0.274 - 10.45 51.08 1963 0.000 0.004 0.045 0.046 0.019 0.023 0.011 0.027 0.000 0.000 0.003 0.014 0.009 0.000 0.036 0.000 0.000 0.000 0.036 0.024 0.026 0.000 0.000 0.325 - 10.45 51.08 1964 0.000 0.009 0.061 0.057 0.022 0.024 0.013 0.031 0.000 0.000 0.003 0.013 0.009 0.000 0.046 0.000 0.000 0.000 0.040 0.027 0.029 0.000 0.000 0.384 - 10.45 51.08 1965 0.000 0.009 0.050 0.072 0.024 0.021 0.014 0.033 0.000 0.000 0.003 0.013 0.009 0.000 0.042 0.000 0.000 0.000 0.044 0.028 0.039 0.000 0.000 0.401 - 10.45 51.08 1966 0.000 0.006 0.043 0.064 0.025 0.020 0.015 0.035 0.000 0.000 0.003 0.011 0.008 0.000 0.049 0.000 0.000 0.000 0.046 0.029 0.033 0.000 0.000 0.387 - 10.45 51.08 1967 0.000 0.007 0.094 0.071 0.026 0.020 0.017 0.046 0.000 0.000 0.003 0.010 0.007 0.000 0.065 0.000 0.000 0.000 0.049 0.037 0.035 0.000 0.000 0.486 - 10.45 51.08 1968 0.000 0.004 0.040 0.076 0.027 0.026 0.017 0.039 0.000 0.000 0.003 0.011 0.007 0.000 0.057 0.000 0.000 0.000 0.050 0.030 0.036 0.000 0.000 0.422 - 10.45 51.08 1969 0.000 0.003 0.057 0.084 0.027 0.021 0.018 0.037 0.000 0.000 0.002 0.006 0.007 0.000 0.061 0.000 0.000 0.000 0.052 0.030 0.036 0.000 0.000 0.444 - 10.45 51.08 1970 0.000 0.002 0.037 0.111 0.027 0.018 0.018 0.038 0.000 0.000 0.002 0.004 0.006 0.000 0.059 0.000 0.000 0.000 0.052 0.037 0.037 0.000 0.000 0.448 - 10.45 51.08 1971 0.000 0.003 0.036 0.138 0.039 0.037 0.019 0.038 0.000 0.000 0.001 0.001 0.007 0.000 0.063 0.000 0.000 0.000 0.062 0.026 0.037 0.000 0.000 0.506 - 10.45 51.08 1972 0.000 0.000 0.053 0.085 0.036 0.020 0.019 0.037 0.000 0.000 0.001 0.001 0.003 0.000 0.034 0.000 0.000 0.000 0.049 0.033 0.036 0.000 0.000 0.408 - 10.45 51.08 1973 0.000 0.000 0.051 0.121 0.034 0.034 0.019 0.048 0.000 0.000 0.001 0.002 0.003 0.000 0.066 0.000 0.000 0.000 0.071 0.046 0.035 0.000 0.000 0.530 - 10.45 51.08 1974 0.000 0.000 0.048 0.123 0.045 0.008 0.019 0.047 0.000 0.000 0.007 0.000 0.004 0.000 0.027 0.000 0.000 0.000 0.045 0.020 0.059 0.000 0.000 0.451 - 10.45 51.08 1975 0.000 0.000 0.058 0.093 0.020 0.007 0.019 0.034 0.000 0.000 0.000 0.000 0.003 0.000 0.026 0.000 0.000 0.000 0.058 0.028 0.047 0.000 0.000 0.394 - 10.45 51.08 1976 0.000 0.000 0.044 0.143 0.032 0.009 0.020 0.047 0.000 0.000 0.000 0.000 0.002 0.000 0.044 0.000 0.000 0.000 0.071 0.027 0.045 0.000 0.000 0.485 - 10.45 51.08 1977 0.000 0.000 0.064 0.100 0.019 0.015 0.020 0.033 0.000 0.000 0.000 0.000 0.001 0.000 0.041 0.000 0.000 0.000 0.042 0.025 0.030 0.000 0.000 0.390 - 10.45 51.08 1978 0.000 0.000 0.027 0.153 0.018 0.001 0.020 0.032 0.000 0.000 0.000 0.000 0.022 0.000 0.030 0.000 0.000 0.000 0.041 0.024 0.044 0.000 0.000 0.412 - 10.45 51.08 1979 0.000 0.000 0.051 0.110 0.032 0.004 0.021 0.033 0.000 0.000 0.000 0.000 0.000 0.000 0.009 0.000 0.000 0.000 0.057 0.033 0.029 0.000 0.000 0.379 - 10.45 51.08 1980 0.000 0.000 0.025 0.117 0.032 0.001 0.022 0.033 0.000 0.000 0.000 0.001 0.000 0.000 0.029 0.000 0.000 0.000 0.057 0.013 0.030 0.000 0.000 0.359 - 10.45 51.08 1981 0.000 0.000 0.037 0.125 0.017 0.004 0.022 0.050 0.000 0.000 0.000 0.000 0.000 0.000 0.007 0.000 0.000 0.000 0.057 0.013 0.030 0.000 0.000 0.361 - 10.45 51.08 1982 0.000 0.000 0.046 0.137 0.017 0.001 0.023 0.049 0.000 0.000 0.000 0.000 0.000 0.000 0.027 0.000 0.000 0.000 0.072 0.012 0.046 0.000 0.000 0.430 - 10.45 51.08 1983 0.000 0.000 0.020 0.136 0.016 0.023 0.023 0.030 0.000 0.000 0.000 0.000 0.000 0.000 0.016 0.000 0.000 0.000 0.036 0.011 0.044 0.000 0.000 0.355 - 10.45 51.08 1984 0.000 0.000 0.019 0.139 0.015 0.000 0.023 0.063 0.000 0.000 0.000 0.000 0.000 0.000 0.015 0.000 0.000 0.000 0.052 0.010 0.026 0.000 0.000 0.361 - 10.45 51.08 1985 0.000 0.000 0.018 0.139 0.014 0.000 0.022 0.043 0.000 0.000 0.000 0.000 0.000 0.000 0.024 0.000 0.000 0.000 0.049 0.019 0.025 0.000 0.000 0.353 - 10.45 51.08 1986 0.000 0.000 0.043 0.152 0.015 0.000 0.046 0.026 0.000 0.000 0.000 0.001 0.000 0.000 0.013 0.000 0.000 0.000 0.050 0.009 0.026 0.000 0.000 0.379 - 10.45 51.08 1987 0.000 0.000 0.003 0.255 0.015 0.000 0.022 0.043 0.000 0.000 0.000 0.000 0.000 0.000 0.002 0.000 0.000 0.000 0.030 0.008 0.025 0.000 0.000 0.403 - 10.45 51.08 1988 0.000 0.000 0.016 0.264 0.014 0.000 0.022 0.060 0.000 0.000 0.000 0.000 0.000 0.000 0.002 0.000 0.000 0.000 0.067 0.017 0.025 0.000 0.000 0.487 - 10.45 51.08 1989 0.000 0.000 0.002 0.161 0.031 0.000 0.023 0.021 0.000 0.000 0.000 0.000 0.000 0.000 0.002 0.000 0.000 0.000 0.027 0.007 0.024 0.000 0.000 0.298 - 10.45 51.08 1990 0.000 0.000 0.028 0.164 0.012 0.000 0.022 0.020 0.000 0.000 0.000 0.017 0.000 0.000 0.002 0.000 0.000 0.000 0.026 0.016 0.023 0.000 0.000 0.331 - 10.45 51.08 1991 0.000 0.000 0.014 0.170 0.029 0.000 0.023 0.039 0.000 0.000 0.000 0.000 0.000 0.000 0.033 0.000 0.000 0.000 0.026 0.006 0.023 0.000 0.000 0.362 - 10.45 51.08 1992 0.000 0.000 0.014 0.173 0.010 0.000 0.022 0.037 0.000 0.000 0.000 0.000 0.000 0.000 0.011 0.000 0.000 0.000 0.024 0.015 0.022 0.000 0.000 0.328 - 10.45 51.08 1993 0.000 0.000 0.013 4.368 0.236 0.000 0.334 0.366 0.000 0.000 0.000 0.000 0.000 0.000 0.022 0.000 0.000 0.000 0.529 0.148 0.468 0.000 0.000 6.483 - 10.45 51.08 1994 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1995 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1996 0.000 0.002 0.006 0.005 0.004 0.002 0.002 0.003 0.000 0.000 0.001 0.003 0.003 0.000 0.006 0.000 0.000 0.003 0.003 0.003 0.006 0.256 0.000 0.306 - 10.45 51.08 1997 0.000 0.003 0.011 0.009 0.007 0.004 0.004 0.006 0.000 0.000 0.002 0.006 0.004 0.000 0.008 0.000 0.000 0.006 0.005 0.007 0.011 0.187 0.000 0.279 - 10.45 51.08 1998 0.000 0.004 0.018 0.016 0.012 0.007 0.006 0.010 0.000 0.000 0.003 0.008 0.006 0.000 0.014 0.000 0.000 0.009 0.009 0.011 0.019 0.120 0.000 0.271 - 10.45 51.08 1999 0.000 0.004 0.026 0.024 0.018 0.009 0.010 0.015 0.000 0.000 0.003 0.011 0.008 0.000 0.020 0.000 0.000 0.014 0.013 0.019 0.028 0.004 0.000 0.227 - 10.45 51.08 2000 0.000 0.005 0.044 0.033 0.024 0.012 0.013 0.020 0.000 0.000 0.004 0.012 0.009 0.000 0.027 0.000 0.000 0.019 0.022 0.020 0.037 0.000 0.000 0.299 - 10.45 51.08 2001 0.000 0.004 0.045 0.041 0.029 0.013 0.016 0.024 0.000 0.000 0.004 0.013 0.010 0.000 0.031 0.000 0.000 0.022 0.020 0.024 0.044 0.000 0.000 0.340 - 10.45 51.08 2002 0.000 0.004 0.042 0.048 0.032 0.014 0.018 0.027 0.000 0.000 0.004 0.013 0.009 0.000 0.035 0.000 0.000 0.032 0.022 0.027 0.050 0.000 0.000 0.377 - 10.45 51.08 2003 0.000 0.005 0.044 0.053 0.034 0.014 0.019 0.036 0.000 0.000 0.004 0.011 0.009 0.000 0.043 0.000 0.000 0.026 0.024 0.028 0.053 0.000 0.000 0.402 - 10.45 51.08 2004 0.000 0.012 0.067 0.071 0.050 0.013 0.020 0.028 0.000 0.000 0.005 0.010 0.009 0.000 0.064 0.000 0.000 0.027 0.033 0.029 0.056 0.000 0.000 0.493 - 10.45 51.08 2005 0.000 0.006 0.058 0.059 0.033 0.019 0.021 0.029 0.000 0.000 0.003 0.007 0.007 0.000 0.039 0.000 0.000 0.027 0.033 0.030 0.065 0.000 0.000 0.437 - 10.45 51.08 2006 0.000 0.006 0.066 0.082 0.036 0.011 0.022 0.030 0.000 0.000 0.002 0.006 0.008 0.000 0.040 0.000 0.000 0.028 0.024 0.037 0.067 0.000 0.000 0.461 - 10.45 51.08 2007 0.000 0.002 0.047 0.067 0.035 0.010 0.023 0.031 0.000 0.000 0.002 0.003 0.009 0.000 0.082 0.000 0.000 0.031 0.024 0.037 0.058 0.000 0.000 0.460 - 10.45 51.08 2008 0.000 0.005 0.038 0.074 0.036 0.016 0.024 0.054 0.000 0.000 0.002 0.002 0.005 0.000 0.024 0.000 0.000 0.042 0.027 0.037 0.062 0.000 0.000 0.447 - 10.45 51.08 2009 0.000 0.000 0.037 0.079 0.036 0.018 0.024 0.042 0.000 0.000 0.001 0.002 0.003 0.000 0.024 0.000 0.000 0.030 0.026 0.027 0.074 0.000 0.000 0.423 - 10.45 51.08 2010 0.000 0.000 0.067 0.083 0.036 0.012 0.024 0.028 0.000 0.000 0.008 0.001 0.002 0.000 0.032 0.000 0.000 0.029 0.038 0.026 0.072 0.000 0.000 0.459 - 10.45 51.08 2011 0.000 0.000 0.064 0.122 0.058 0.011 0.026 0.028 0.000 0.000 0.000 0.001 0.002 0.000 0.021 0.000 0.000 0.029 0.024 0.026 0.072 0.000 0.000 0.485 - 10.45 51.08 2012 0.000 0.000 0.040 0.095 0.037 0.007 0.027 0.029 0.000 0.000 0.000 0.002 0.025 0.000 0.041 0.000 0.000 0.030 0.038 0.025 0.072 0.000 0.000 0.468 diff --git a/rLPJGUESS/inst/extdata/outputsForTests/run_distinterval/outDirectory/cmass.out b/rLPJGUESS/inst/extdata/outputsForTests/run_distinterval/outDirectory/cmass.out deleted file mode 100644 index 091a354..0000000 --- a/rLPJGUESS/inst/extdata/outputsForTests/run_distinterval/outDirectory/cmass.out +++ /dev/null @@ -1,63 +0,0 @@ - Lon Lat Year Abi_alb BES Bet_pen Bet_pub Car_bet Cor_ave Fag_syl Fra_exc Jun_oxy MRS Pic_abi Pic_sit Pin_syl Pin_hal Pop_tre Que_coc Que_ile Que_pub Que_rob Til_cor Ulm_gla C3_gr C4_gr Total - 10.45 51.08 1951 0.000 0.000 0.000 7.820 0.093 0.000 0.364 0.140 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.374 0.049 0.117 0.000 0.000 8.956 - 10.45 51.08 1952 0.000 0.000 0.000 8.077 0.093 0.000 0.370 0.117 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.376 0.049 0.117 0.000 0.000 9.200 - 10.45 51.08 1953 0.000 0.000 0.000 7.999 0.094 0.000 0.380 0.119 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.380 0.049 0.119 0.000 0.000 9.139 - 10.45 51.08 1954 0.000 0.000 0.000 7.850 0.094 0.000 0.387 0.119 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.382 0.049 0.096 0.000 0.000 8.978 - 10.45 51.08 1955 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1956 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1957 0.000 0.011 0.018 0.018 0.008 0.013 0.005 0.011 0.000 0.000 0.003 0.012 0.009 0.000 0.017 0.000 0.000 0.000 0.015 0.011 0.011 0.305 0.000 0.466 - 10.45 51.08 1958 0.000 0.018 0.042 0.044 0.019 0.028 0.010 0.026 0.000 0.000 0.005 0.023 0.016 0.000 0.039 0.000 0.000 0.000 0.034 0.025 0.025 0.272 0.000 0.628 - 10.45 51.08 1959 0.000 0.025 0.082 0.084 0.037 0.051 0.020 0.051 0.000 0.000 0.008 0.034 0.025 0.000 0.073 0.000 0.000 0.000 0.067 0.046 0.050 0.114 0.000 0.768 - 10.45 51.08 1960 0.000 0.032 0.128 0.141 0.059 0.076 0.033 0.082 0.000 0.000 0.011 0.045 0.034 0.000 0.115 0.000 0.000 0.000 0.108 0.072 0.079 0.022 0.000 1.038 - 10.45 51.08 1961 0.000 0.035 0.178 0.207 0.084 0.102 0.047 0.118 0.000 0.000 0.013 0.053 0.041 0.000 0.164 0.000 0.000 0.000 0.154 0.102 0.114 0.000 0.000 1.411 - 10.45 51.08 1962 0.000 0.036 0.223 0.275 0.105 0.122 0.060 0.148 0.000 0.000 0.014 0.056 0.045 0.000 0.204 0.000 0.000 0.000 0.194 0.127 0.143 0.000 0.000 1.752 - 10.45 51.08 1963 0.000 0.035 0.263 0.352 0.127 0.136 0.073 0.179 0.000 0.000 0.014 0.055 0.047 0.000 0.243 0.000 0.000 0.000 0.235 0.152 0.173 0.000 0.000 2.085 - 10.45 51.08 1964 0.000 0.029 0.281 0.419 0.146 0.143 0.084 0.206 0.000 0.000 0.014 0.050 0.046 0.000 0.269 0.000 0.000 0.000 0.271 0.170 0.199 0.000 0.000 2.328 - 10.45 51.08 1965 0.000 0.023 0.305 0.483 0.162 0.149 0.095 0.231 0.000 0.000 0.013 0.047 0.047 0.000 0.296 0.000 0.000 0.000 0.303 0.187 0.216 0.000 0.000 2.556 - 10.45 51.08 1966 0.000 0.018 0.339 0.569 0.182 0.154 0.108 0.260 0.000 0.000 0.012 0.042 0.045 0.000 0.320 0.000 0.000 0.000 0.340 0.205 0.243 0.000 0.000 2.837 - 10.45 51.08 1967 0.000 0.012 0.317 0.655 0.198 0.154 0.118 0.274 0.000 0.000 0.011 0.038 0.044 0.000 0.320 0.000 0.000 0.000 0.371 0.212 0.265 0.000 0.000 2.988 - 10.45 51.08 1968 0.000 0.008 0.333 0.732 0.208 0.143 0.125 0.289 0.000 0.000 0.010 0.030 0.041 0.000 0.316 0.000 0.000 0.000 0.393 0.218 0.280 0.000 0.000 3.126 - 10.45 51.08 1969 0.000 0.005 0.332 0.818 0.221 0.137 0.134 0.307 0.000 0.000 0.009 0.026 0.037 0.000 0.305 0.000 0.000 0.000 0.416 0.225 0.298 0.000 0.000 3.270 - 10.45 51.08 1970 0.000 0.003 0.347 0.887 0.233 0.131 0.143 0.324 0.000 0.000 0.008 0.022 0.033 0.000 0.291 0.000 0.000 0.000 0.439 0.222 0.315 0.000 0.000 3.399 - 10.45 51.08 1971 0.000 0.000 0.345 0.887 0.222 0.099 0.143 0.325 0.000 0.000 0.007 0.022 0.028 0.000 0.255 0.000 0.000 0.000 0.430 0.217 0.316 0.000 0.000 3.298 - 10.45 51.08 1972 0.000 0.000 0.343 1.009 0.225 0.088 0.154 0.346 0.000 0.000 0.007 0.021 0.028 0.000 0.258 0.000 0.000 0.000 0.458 0.219 0.336 0.000 0.000 3.491 - 10.45 51.08 1973 0.000 0.000 0.323 1.037 0.215 0.058 0.155 0.337 0.000 0.000 0.007 0.019 0.027 0.000 0.214 0.000 0.000 0.000 0.439 0.194 0.339 0.000 0.000 3.364 - 10.45 51.08 1974 0.000 0.000 0.321 1.157 0.208 0.055 0.169 0.351 0.000 0.000 0.000 0.019 0.025 0.000 0.216 0.000 0.000 0.000 0.471 0.205 0.340 0.000 0.000 3.536 - 10.45 51.08 1975 0.000 0.000 0.301 1.288 0.218 0.051 0.179 0.370 0.000 0.000 0.000 0.019 0.024 0.000 0.214 0.000 0.000 0.000 0.485 0.202 0.344 0.000 0.000 3.694 - 10.45 51.08 1976 0.000 0.000 0.275 1.294 0.203 0.043 0.178 0.353 0.000 0.000 0.000 0.018 0.022 0.000 0.182 0.000 0.000 0.000 0.454 0.189 0.328 0.000 0.000 3.539 - 10.45 51.08 1977 0.000 0.000 0.242 1.453 0.214 0.030 0.191 0.374 0.000 0.000 0.000 0.018 0.022 0.000 0.161 0.000 0.000 0.000 0.481 0.188 0.348 0.000 0.000 3.722 - 10.45 51.08 1978 0.000 0.000 0.240 1.577 0.225 0.030 0.205 0.396 0.000 0.000 0.000 0.018 0.000 0.000 0.147 0.000 0.000 0.000 0.509 0.186 0.354 0.000 0.000 3.887 - 10.45 51.08 1979 0.000 0.000 0.211 1.735 0.221 0.026 0.218 0.414 0.000 0.000 0.000 0.018 0.000 0.000 0.150 0.000 0.000 0.000 0.518 0.173 0.370 0.000 0.000 4.055 - 10.45 51.08 1980 0.000 0.000 0.204 1.900 0.215 0.026 0.229 0.431 0.000 0.000 0.000 0.018 0.000 0.000 0.132 0.000 0.000 0.000 0.523 0.175 0.385 0.000 0.000 4.237 - 10.45 51.08 1981 0.000 0.000 0.185 2.107 0.224 0.023 0.243 0.434 0.000 0.000 0.000 0.018 0.000 0.000 0.134 0.000 0.000 0.000 0.531 0.180 0.402 0.000 0.000 4.480 - 10.45 51.08 1982 0.000 0.000 0.145 2.163 0.220 0.023 0.240 0.412 0.000 0.000 0.000 0.018 0.000 0.000 0.111 0.000 0.000 0.000 0.491 0.174 0.380 0.000 0.000 4.377 - 10.45 51.08 1983 0.000 0.000 0.134 2.331 0.226 0.000 0.251 0.424 0.000 0.000 0.000 0.018 0.000 0.000 0.102 0.000 0.000 0.000 0.506 0.175 0.375 0.000 0.000 4.542 - 10.45 51.08 1984 0.000 0.000 0.123 2.504 0.230 0.000 0.260 0.401 0.000 0.000 0.000 0.018 0.000 0.000 0.093 0.000 0.000 0.000 0.501 0.177 0.384 0.000 0.000 4.692 - 10.45 51.08 1985 0.000 0.000 0.113 2.708 0.237 0.000 0.273 0.396 0.000 0.000 0.000 0.018 0.000 0.000 0.073 0.000 0.000 0.000 0.500 0.169 0.396 0.000 0.000 4.883 - 10.45 51.08 1986 0.000 0.000 0.076 2.933 0.243 0.000 0.264 0.409 0.000 0.000 0.000 0.017 0.000 0.000 0.063 0.000 0.000 0.000 0.497 0.171 0.409 0.000 0.000 5.083 - 10.45 51.08 1987 0.000 0.000 0.077 3.080 0.249 0.000 0.275 0.401 0.000 0.000 0.000 0.017 0.000 0.000 0.064 0.000 0.000 0.000 0.510 0.173 0.419 0.000 0.000 5.263 - 10.45 51.08 1988 0.000 0.000 0.064 3.159 0.250 0.000 0.281 0.368 0.000 0.000 0.000 0.017 0.000 0.000 0.063 0.000 0.000 0.000 0.479 0.163 0.423 0.000 0.000 5.268 - 10.45 51.08 1989 0.000 0.000 0.064 3.324 0.234 0.000 0.286 0.371 0.000 0.000 0.000 0.017 0.000 0.000 0.063 0.000 0.000 0.000 0.482 0.162 0.426 0.000 0.000 5.430 - 10.45 51.08 1990 0.000 0.000 0.039 3.580 0.239 0.000 0.297 0.380 0.000 0.000 0.000 0.000 0.000 0.000 0.064 0.000 0.000 0.000 0.494 0.154 0.437 0.000 0.000 5.684 - 10.45 51.08 1991 0.000 0.000 0.026 3.728 0.221 0.000 0.296 0.359 0.000 0.000 0.000 0.000 0.000 0.000 0.032 0.000 0.000 0.000 0.491 0.152 0.434 0.000 0.000 5.739 - 10.45 51.08 1992 0.000 0.000 0.013 3.911 0.221 0.000 0.300 0.341 0.000 0.000 0.000 0.000 0.000 0.000 0.021 0.000 0.000 0.000 0.493 0.142 0.436 0.000 0.000 5.880 - 10.45 51.08 1993 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1994 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1995 0.000 0.010 0.017 0.014 0.011 0.008 0.006 0.009 0.000 0.000 0.003 0.010 0.009 0.000 0.014 0.000 0.000 0.009 0.008 0.010 0.018 0.319 0.000 0.478 - 10.45 51.08 1996 0.000 0.017 0.039 0.034 0.026 0.017 0.013 0.021 0.000 0.000 0.006 0.018 0.016 0.000 0.030 0.000 0.000 0.020 0.019 0.023 0.040 0.235 0.000 0.576 - 10.45 51.08 1997 0.000 0.025 0.074 0.069 0.050 0.031 0.026 0.041 0.000 0.000 0.009 0.029 0.026 0.000 0.057 0.000 0.000 0.039 0.036 0.044 0.077 0.151 0.000 0.785 - 10.45 51.08 1998 0.000 0.031 0.122 0.119 0.082 0.048 0.043 0.068 0.000 0.000 0.013 0.039 0.036 0.000 0.094 0.000 0.000 0.065 0.059 0.072 0.127 0.005 0.000 1.025 - 10.45 51.08 1999 0.000 0.035 0.180 0.182 0.122 0.066 0.064 0.101 0.000 0.000 0.016 0.047 0.043 0.000 0.138 0.000 0.000 0.096 0.088 0.103 0.189 0.000 0.000 1.468 - 10.45 51.08 2000 0.000 0.036 0.223 0.247 0.157 0.080 0.083 0.130 0.000 0.000 0.017 0.050 0.048 0.000 0.178 0.000 0.000 0.124 0.109 0.132 0.245 0.000 0.000 1.859 - 10.45 51.08 2001 0.000 0.034 0.262 0.315 0.188 0.091 0.100 0.158 0.000 0.000 0.017 0.047 0.049 0.000 0.212 0.000 0.000 0.150 0.132 0.157 0.297 0.000 0.000 2.208 - 10.45 51.08 2002 0.000 0.032 0.295 0.381 0.213 0.095 0.114 0.179 0.000 0.000 0.016 0.041 0.048 0.000 0.238 0.000 0.000 0.164 0.150 0.177 0.338 0.000 0.000 2.480 - 10.45 51.08 2003 0.000 0.028 0.317 0.431 0.229 0.095 0.123 0.186 0.000 0.000 0.015 0.036 0.046 0.000 0.247 0.000 0.000 0.177 0.163 0.186 0.366 0.000 0.000 2.646 - 10.45 51.08 2004 0.000 0.017 0.315 0.476 0.229 0.095 0.132 0.199 0.000 0.000 0.012 0.029 0.042 0.000 0.233 0.000 0.000 0.190 0.166 0.196 0.392 0.000 0.000 2.722 - 10.45 51.08 2005 0.000 0.011 0.325 0.552 0.249 0.088 0.145 0.218 0.000 0.000 0.011 0.024 0.039 0.000 0.243 0.000 0.000 0.208 0.174 0.210 0.422 0.000 0.000 2.918 - 10.45 51.08 2006 0.000 0.006 0.322 0.610 0.267 0.087 0.157 0.236 0.000 0.000 0.010 0.020 0.035 0.000 0.250 0.000 0.000 0.225 0.188 0.217 0.447 0.000 0.000 3.076 - 10.45 51.08 2007 0.000 0.005 0.342 0.716 0.291 0.087 0.174 0.264 0.000 0.000 0.009 0.019 0.031 0.000 0.220 0.000 0.000 0.250 0.210 0.227 0.501 0.000 0.000 3.344 - 10.45 51.08 2008 0.000 0.000 0.353 0.793 0.301 0.077 0.181 0.253 0.000 0.000 0.008 0.017 0.028 0.000 0.225 0.000 0.000 0.250 0.217 0.222 0.521 0.000 0.000 3.447 - 10.45 51.08 2009 0.000 0.000 0.365 0.879 0.313 0.064 0.190 0.252 0.000 0.000 0.008 0.015 0.027 0.000 0.232 0.000 0.000 0.261 0.227 0.229 0.533 0.000 0.000 3.594 - 10.45 51.08 2010 0.000 0.000 0.351 0.999 0.329 0.057 0.202 0.267 0.000 0.000 0.000 0.014 0.026 0.000 0.232 0.000 0.000 0.277 0.229 0.237 0.554 0.000 0.000 3.773 - 10.45 51.08 2011 0.000 0.000 0.331 1.086 0.320 0.049 0.212 0.281 0.000 0.000 0.000 0.013 0.025 0.000 0.239 0.000 0.000 0.291 0.240 0.241 0.570 0.000 0.000 3.899 - 10.45 51.08 2012 0.000 0.000 0.324 1.185 0.322 0.044 0.217 0.287 0.000 0.000 0.000 0.010 0.000 0.000 0.220 0.000 0.000 0.298 0.233 0.241 0.570 0.000 0.000 3.952 diff --git a/rLPJGUESS/inst/extdata/outputsForTests/run_distinterval/outDirectory/cpool.out b/rLPJGUESS/inst/extdata/outputsForTests/run_distinterval/outDirectory/cpool.out deleted file mode 100644 index cd84e4b..0000000 --- a/rLPJGUESS/inst/extdata/outputsForTests/run_distinterval/outDirectory/cpool.out +++ /dev/null @@ -1,63 +0,0 @@ - Lon Lat Year VegC LitterC SoilC Total - 10.45 51.08 1951 8.956 4.273 10.444 23.674 - 10.45 51.08 1952 9.200 4.137 10.432 23.769 - 10.45 51.08 1953 9.139 4.330 10.401 23.871 - 10.45 51.08 1954 8.978 4.614 10.396 23.988 - 10.45 51.08 1955 0.000 13.724 10.400 24.124 - 10.45 51.08 1956 0.000 13.033 10.519 23.552 - 10.45 51.08 1957 0.466 12.489 10.551 23.507 - 10.45 51.08 1958 0.628 12.154 10.571 23.353 - 10.45 51.08 1959 0.768 11.529 10.661 22.958 - 10.45 51.08 1960 1.038 11.002 10.741 22.781 - 10.45 51.08 1961 1.411 10.456 10.790 22.657 - 10.45 51.08 1962 1.752 10.071 10.827 22.650 - 10.45 51.08 1963 2.085 9.782 10.869 22.737 - 10.45 51.08 1964 2.328 9.422 10.911 22.661 - 10.45 51.08 1965 2.556 9.181 10.963 22.700 - 10.45 51.08 1966 2.837 8.918 11.015 22.770 - 10.45 51.08 1967 2.988 8.665 11.053 22.707 - 10.45 51.08 1968 3.126 8.363 11.096 22.585 - 10.45 51.08 1969 3.270 8.168 11.140 22.577 - 10.45 51.08 1970 3.399 7.980 11.182 22.562 - 10.45 51.08 1971 3.298 7.770 11.206 22.274 - 10.45 51.08 1972 3.491 7.660 11.247 22.398 - 10.45 51.08 1973 3.364 7.522 11.267 22.154 - 10.45 51.08 1974 3.536 7.408 11.289 22.232 - 10.45 51.08 1975 3.694 7.152 11.290 22.136 - 10.45 51.08 1976 3.539 7.013 11.285 21.837 - 10.45 51.08 1977 3.722 6.930 11.309 21.961 - 10.45 51.08 1978 3.887 6.790 11.317 21.994 - 10.45 51.08 1979 4.055 6.624 11.312 21.991 - 10.45 51.08 1980 4.237 6.448 11.310 21.995 - 10.45 51.08 1981 4.480 6.353 11.315 22.148 - 10.45 51.08 1982 4.377 6.170 11.290 21.838 - 10.45 51.08 1983 4.542 5.964 11.275 21.782 - 10.45 51.08 1984 4.692 5.936 11.286 21.914 - 10.45 51.08 1985 4.883 5.737 11.271 21.892 - 10.45 51.08 1986 5.083 5.653 11.258 21.993 - 10.45 51.08 1987 5.263 5.680 11.269 22.212 - 10.45 51.08 1988 5.268 5.614 11.246 22.128 - 10.45 51.08 1989 5.430 5.374 11.216 22.020 - 10.45 51.08 1990 5.684 5.203 11.188 22.075 - 10.45 51.08 1991 5.739 5.074 11.160 21.973 - 10.45 51.08 1992 5.880 4.920 11.130 21.930 - 10.45 51.08 1993 0.000 11.014 11.124 22.138 - 10.45 51.08 1994 0.000 10.170 11.240 21.410 - 10.45 51.08 1995 0.478 9.712 11.234 21.424 - 10.45 51.08 1996 0.576 9.637 11.219 21.432 - 10.45 51.08 1997 0.785 9.142 11.276 21.203 - 10.45 51.08 1998 1.025 8.697 11.312 21.035 - 10.45 51.08 1999 1.468 8.273 11.334 21.075 - 10.45 51.08 2000 1.859 7.924 11.330 21.113 - 10.45 51.08 2001 2.208 7.663 11.344 21.215 - 10.45 51.08 2002 2.480 7.501 11.373 21.354 - 10.45 51.08 2003 2.646 7.147 11.381 21.174 - 10.45 51.08 2004 2.722 6.967 11.397 21.087 - 10.45 51.08 2005 2.918 6.686 11.410 21.014 - 10.45 51.08 2006 3.076 6.447 11.409 20.932 - 10.45 51.08 2007 3.344 6.314 11.425 21.083 - 10.45 51.08 2008 3.447 6.095 11.426 20.968 - 10.45 51.08 2009 3.594 5.889 11.429 20.912 - 10.45 51.08 2010 3.773 5.818 11.451 21.043 - 10.45 51.08 2011 3.899 5.633 11.438 20.969 - 10.45 51.08 2012 3.952 5.476 11.423 20.851 diff --git a/rLPJGUESS/inst/extdata/outputsForTests/run_distinterval/outDirectory/cton_leaf.out b/rLPJGUESS/inst/extdata/outputsForTests/run_distinterval/outDirectory/cton_leaf.out deleted file mode 100644 index d25b381..0000000 --- a/rLPJGUESS/inst/extdata/outputsForTests/run_distinterval/outDirectory/cton_leaf.out +++ /dev/null @@ -1,63 +0,0 @@ - Lon Lat Year Abi_alb BES Bet_pen Bet_pub Car_bet Cor_ave Fag_syl Fra_exc Jun_oxy MRS Pic_abi Pic_sit Pin_syl Pin_hal Pop_tre Que_coc Que_ile Que_pub Que_rob Til_cor Ulm_gla C3_gr C4_gr Total - 10.45 51.08 1951 0.0 0.0 0.0 23.6 23.6 0.0 23.6 23.6 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 23.6 23.6 23.6 0.0 0.0 23.6 - 10.45 51.08 1952 0.0 0.0 0.0 23.6 23.6 0.0 23.6 23.6 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 23.6 23.6 23.6 0.0 0.0 23.6 - 10.45 51.08 1953 0.0 0.0 0.0 23.6 23.6 0.0 23.6 23.6 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 23.6 23.6 23.6 0.0 0.0 23.6 - 10.45 51.08 1954 0.0 0.0 0.0 23.6 23.6 0.0 23.6 23.6 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 23.6 23.6 23.6 0.0 0.0 23.6 - 10.45 51.08 1955 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 - 10.45 51.08 1956 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 - 10.45 51.08 1957 0.0 37.3 23.6 23.6 23.6 23.6 23.6 23.6 0.0 0.0 56.4 60.8 50.7 0.0 23.6 0.0 0.0 0.0 23.6 23.6 23.6 23.6 0.0 24.5 - 10.45 51.08 1958 0.0 37.3 23.6 23.6 23.6 23.6 23.6 23.6 0.0 0.0 56.4 60.8 50.7 0.0 23.6 0.0 0.0 0.0 23.6 23.6 23.6 23.6 0.0 25.0 - 10.45 51.08 1959 0.0 37.3 23.6 23.6 23.6 23.6 23.6 23.6 0.0 0.0 56.4 60.8 50.7 0.0 23.6 0.0 0.0 0.0 23.6 23.6 23.6 23.6 0.0 25.8 - 10.45 51.08 1960 0.0 37.3 23.6 23.6 23.6 23.6 23.6 23.6 0.0 0.0 56.4 60.8 50.7 0.0 23.6 0.0 0.0 0.0 23.6 23.6 23.6 23.6 0.0 26.2 - 10.45 51.08 1961 0.0 37.3 23.6 23.6 23.6 23.6 23.6 23.6 0.0 0.0 56.4 60.8 50.7 0.0 23.6 0.0 0.0 0.0 23.6 23.6 23.6 0.0 0.0 26.1 - 10.45 51.08 1962 0.0 37.3 23.6 23.6 23.6 23.6 23.6 23.6 0.0 0.0 56.4 60.8 50.7 0.0 23.6 0.0 0.0 0.0 23.6 23.6 23.6 0.0 0.0 25.8 - 10.45 51.08 1963 0.0 37.3 23.6 23.6 23.6 23.6 23.6 23.6 0.0 0.0 56.4 60.8 50.7 0.0 23.6 0.0 0.0 0.0 23.6 23.6 23.6 0.0 0.0 25.5 - 10.45 51.08 1964 0.0 37.3 23.6 23.6 23.6 23.6 23.6 23.6 0.0 0.0 56.4 60.8 50.7 0.0 23.6 0.0 0.0 0.0 23.6 23.6 23.6 0.0 0.0 25.2 - 10.45 51.08 1965 0.0 37.3 23.6 23.6 23.6 23.6 23.6 23.6 0.0 0.0 56.4 60.8 50.7 0.0 23.6 0.0 0.0 0.0 23.6 23.6 23.6 0.0 0.0 25.1 - 10.45 51.08 1966 0.0 37.3 23.6 23.6 23.6 23.6 23.6 23.6 0.0 0.0 56.4 60.8 50.7 0.0 23.6 0.0 0.0 0.0 23.6 23.6 23.6 0.0 0.0 24.8 - 10.45 51.08 1967 0.0 37.3 23.6 23.6 23.6 23.6 23.6 23.6 0.0 0.0 56.4 60.8 50.7 0.0 23.6 0.0 0.0 0.0 23.6 23.6 23.6 0.0 0.0 24.7 - 10.45 51.08 1968 0.0 37.3 23.6 23.6 23.6 23.6 23.6 23.6 0.0 0.0 56.4 60.8 50.7 0.0 23.6 0.0 0.0 0.0 23.6 23.6 23.6 0.0 0.0 24.4 - 10.45 51.08 1969 0.0 37.3 23.6 23.6 23.6 23.6 23.6 23.6 0.0 0.0 56.4 60.8 50.7 0.0 23.6 0.0 0.0 0.0 23.6 23.6 23.6 0.0 0.0 24.1 - 10.45 51.08 1970 0.0 37.3 23.6 23.6 23.6 23.6 23.6 23.6 0.0 0.0 56.4 60.8 50.7 0.0 23.6 0.0 0.0 0.0 23.6 23.6 23.6 0.0 0.0 24.0 - 10.45 51.08 1971 0.0 0.0 23.6 23.6 23.6 23.6 23.6 23.6 0.0 0.0 56.4 60.8 50.7 0.0 23.6 0.0 0.0 0.0 23.6 23.6 23.6 0.0 0.0 23.9 - 10.45 51.08 1972 0.0 0.0 23.6 23.6 23.6 23.6 23.6 23.6 0.0 0.0 56.4 60.8 50.7 0.0 23.6 0.0 0.0 0.0 23.6 23.6 23.6 0.0 0.0 23.8 - 10.45 51.08 1973 0.0 0.0 23.6 23.6 23.6 23.6 23.6 23.6 0.0 0.0 56.4 60.8 50.7 0.0 23.6 0.0 0.0 0.0 23.6 23.6 23.6 0.0 0.0 23.8 - 10.45 51.08 1974 0.0 0.0 23.6 23.6 23.6 23.6 23.6 23.6 0.0 0.0 56.4 60.8 50.7 0.0 23.6 0.0 0.0 0.0 23.6 23.6 23.6 0.0 0.0 23.7 - 10.45 51.08 1975 0.0 0.0 23.6 23.6 23.6 23.6 23.6 23.6 0.0 0.0 56.4 60.8 50.7 0.0 23.6 0.0 0.0 0.0 23.6 23.6 23.6 0.0 0.0 23.7 - 10.45 51.08 1976 0.0 0.0 23.6 23.6 23.6 23.6 23.6 23.6 0.0 0.0 56.4 60.8 50.7 0.0 23.6 0.0 0.0 0.0 23.6 23.6 23.6 0.0 0.0 23.7 - 10.45 51.08 1977 0.0 0.0 23.6 23.6 23.6 23.6 23.6 23.6 0.0 0.0 56.4 60.8 50.7 0.0 23.6 0.0 0.0 0.0 23.6 23.6 23.6 0.0 0.0 23.6 - 10.45 51.08 1978 0.0 0.0 23.6 23.6 23.6 23.6 23.6 23.6 0.0 0.0 56.4 60.8 0.0 0.0 23.6 0.0 0.0 0.0 23.6 23.6 23.6 0.0 0.0 23.6 - 10.45 51.08 1979 0.0 0.0 23.6 23.6 23.6 23.6 23.6 23.6 0.0 0.0 56.4 60.8 0.0 0.0 23.6 0.0 0.0 0.0 23.6 23.6 23.6 0.0 0.0 23.6 - 10.45 51.08 1980 0.0 0.0 23.6 23.6 23.6 23.6 23.6 23.6 0.0 0.0 56.4 60.8 0.0 0.0 23.6 0.0 0.0 0.0 23.6 23.6 23.6 0.0 0.0 23.6 - 10.45 51.08 1981 0.0 0.0 23.6 23.6 23.6 23.6 23.6 23.6 0.0 0.0 56.4 60.8 0.0 0.0 23.6 0.0 0.0 0.0 23.6 23.6 23.6 0.0 0.0 23.6 - 10.45 51.08 1982 0.0 0.0 23.6 23.6 23.6 23.6 23.6 23.6 0.0 0.0 56.4 60.8 0.0 0.0 23.6 0.0 0.0 0.0 23.6 23.6 23.6 0.0 0.0 23.6 - 10.45 51.08 1983 0.0 0.0 23.6 23.6 23.6 0.0 23.6 23.6 0.0 0.0 0.0 60.8 0.0 0.0 23.6 0.0 0.0 0.0 23.6 23.6 23.6 0.0 0.0 23.6 - 10.45 51.08 1984 0.0 0.0 23.6 23.6 23.6 0.0 23.6 23.6 0.0 0.0 0.0 60.8 0.0 0.0 23.6 0.0 0.0 0.0 23.6 23.6 23.6 0.0 0.0 23.6 - 10.45 51.08 1985 0.0 0.0 23.6 23.6 23.6 0.0 23.6 23.6 0.0 0.0 0.0 60.8 0.0 0.0 23.6 0.0 0.0 0.0 23.6 23.6 23.6 0.0 0.0 23.6 - 10.45 51.08 1986 0.0 0.0 23.6 23.6 23.6 0.0 23.6 23.6 0.0 0.0 0.0 60.8 0.0 0.0 23.6 0.0 0.0 0.0 23.6 23.6 23.6 0.0 0.0 23.6 - 10.45 51.08 1987 0.0 0.0 23.6 23.6 23.6 0.0 23.6 23.6 0.0 0.0 0.0 60.8 0.0 0.0 23.6 0.0 0.0 0.0 23.6 23.6 23.6 0.0 0.0 23.6 - 10.45 51.08 1988 0.0 0.0 23.6 23.6 23.6 0.0 23.6 23.6 0.0 0.0 0.0 60.8 0.0 0.0 23.6 0.0 0.0 0.0 23.6 23.6 23.6 0.0 0.0 23.6 - 10.45 51.08 1989 0.0 0.0 23.6 23.6 23.6 0.0 23.6 23.6 0.0 0.0 0.0 60.8 0.0 0.0 23.6 0.0 0.0 0.0 23.6 23.6 23.6 0.0 0.0 23.6 - 10.45 51.08 1990 0.0 0.0 23.6 23.6 23.6 0.0 23.6 23.6 0.0 0.0 0.0 0.0 0.0 0.0 23.6 0.0 0.0 0.0 23.6 23.6 23.6 0.0 0.0 23.6 - 10.45 51.08 1991 0.0 0.0 23.6 23.6 23.6 0.0 23.6 23.6 0.0 0.0 0.0 0.0 0.0 0.0 23.6 0.0 0.0 0.0 23.6 23.6 23.6 0.0 0.0 23.6 - 10.45 51.08 1992 0.0 0.0 23.6 23.6 23.6 0.0 23.6 23.6 0.0 0.0 0.0 0.0 0.0 0.0 23.6 0.0 0.0 0.0 23.6 23.6 23.6 0.0 0.0 23.6 - 10.45 51.08 1993 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 - 10.45 51.08 1994 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 - 10.45 51.08 1995 0.0 37.3 23.6 23.6 23.6 23.6 23.6 23.6 0.0 0.0 56.4 60.8 50.7 0.0 23.6 0.0 0.0 23.6 23.6 23.6 23.6 23.6 0.0 24.4 - 10.45 51.08 1996 0.0 37.3 23.6 23.6 23.6 23.6 23.6 23.6 0.0 0.0 56.4 60.8 50.7 0.0 23.6 0.0 0.0 23.6 23.6 23.6 23.6 23.6 0.0 24.9 - 10.45 51.08 1997 0.0 37.3 23.6 23.6 23.6 23.6 23.6 23.6 0.0 0.0 56.4 60.8 50.7 0.0 23.6 0.0 0.0 23.6 23.6 23.6 23.6 23.6 0.0 25.5 - 10.45 51.08 1998 0.0 37.3 23.6 23.6 23.6 23.6 23.6 23.6 0.0 0.0 56.4 60.8 50.7 0.0 23.6 0.0 0.0 23.6 23.6 23.6 23.6 23.6 0.0 26.2 - 10.45 51.08 1999 0.0 37.3 23.6 23.6 23.6 23.6 23.6 23.6 0.0 0.0 56.4 60.8 50.7 0.0 23.6 0.0 0.0 23.6 23.6 23.6 23.6 0.0 0.0 25.9 - 10.45 51.08 2000 0.0 37.3 23.6 23.6 23.6 23.6 23.6 23.6 0.0 0.0 56.4 60.8 50.7 0.0 23.6 0.0 0.0 23.6 23.6 23.6 23.6 0.0 0.0 25.6 - 10.45 51.08 2001 0.0 37.3 23.6 23.6 23.6 23.6 23.6 23.6 0.0 0.0 56.4 60.8 50.7 0.0 23.6 0.0 0.0 23.6 23.6 23.6 23.6 0.0 0.0 25.3 - 10.45 51.08 2002 0.0 37.3 23.6 23.6 23.6 23.6 23.6 23.6 0.0 0.0 56.4 60.8 50.7 0.0 23.6 0.0 0.0 23.6 23.6 23.6 23.6 0.0 0.0 25.1 - 10.45 51.08 2003 0.0 37.3 23.6 23.6 23.6 23.6 23.6 23.6 0.0 0.0 56.4 60.8 50.7 0.0 23.6 0.0 0.0 23.6 23.6 23.6 23.6 0.0 0.0 24.9 - 10.45 51.08 2004 0.0 37.3 23.6 23.6 23.6 23.6 23.6 23.6 0.0 0.0 56.4 60.8 50.7 0.0 23.6 0.0 0.0 23.6 23.6 23.6 23.6 0.0 0.0 24.6 - 10.45 51.08 2005 0.0 37.3 23.6 23.6 23.6 23.6 23.6 23.6 0.0 0.0 56.4 60.8 50.7 0.0 23.6 0.0 0.0 23.6 23.6 23.6 23.6 0.0 0.0 24.3 - 10.45 51.08 2006 0.0 37.3 23.6 23.6 23.6 23.6 23.6 23.6 0.0 0.0 56.4 60.8 50.7 0.0 23.6 0.0 0.0 23.6 23.6 23.6 23.6 0.0 0.0 24.1 - 10.45 51.08 2007 0.0 37.3 23.6 23.6 23.6 23.6 23.6 23.6 0.0 0.0 56.4 60.8 50.7 0.0 23.6 0.0 0.0 23.6 23.6 23.6 23.6 0.0 0.0 24.0 - 10.45 51.08 2008 0.0 0.0 23.6 23.6 23.6 23.6 23.6 23.6 0.0 0.0 56.4 60.8 50.7 0.0 23.6 0.0 0.0 23.6 23.6 23.6 23.6 0.0 0.0 23.9 - 10.45 51.08 2009 0.0 0.0 23.6 23.6 23.6 23.6 23.6 23.6 0.0 0.0 56.4 60.8 50.7 0.0 23.6 0.0 0.0 23.6 23.6 23.6 23.6 0.0 0.0 23.8 - 10.45 51.08 2010 0.0 0.0 23.6 23.6 23.6 23.6 23.6 23.6 0.0 0.0 0.0 60.8 50.7 0.0 23.6 0.0 0.0 23.6 23.6 23.6 23.6 0.0 0.0 23.7 - 10.45 51.08 2011 0.0 0.0 23.6 23.6 23.6 23.6 23.6 23.6 0.0 0.0 0.0 60.8 50.7 0.0 23.6 0.0 0.0 23.6 23.6 23.6 23.6 0.0 0.0 23.7 - 10.45 51.08 2012 0.0 0.0 23.6 23.6 23.6 23.6 23.6 23.6 0.0 0.0 0.0 60.8 0.0 0.0 23.6 0.0 0.0 23.6 23.6 23.6 23.6 0.0 0.0 23.6 diff --git a/rLPJGUESS/inst/extdata/outputsForTests/run_distinterval/outDirectory/dens.out b/rLPJGUESS/inst/extdata/outputsForTests/run_distinterval/outDirectory/dens.out deleted file mode 100644 index e3b394a..0000000 --- a/rLPJGUESS/inst/extdata/outputsForTests/run_distinterval/outDirectory/dens.out +++ /dev/null @@ -1,63 +0,0 @@ - Lon Lat Year Abi_alb BES Bet_pen Bet_pub Car_bet Cor_ave Fag_syl Fra_exc Jun_oxy MRS Pic_abi Pic_sit Pin_syl Pin_hal Pop_tre Que_coc Que_ile Que_pub Que_rob Til_cor Ulm_gla C3_gr C4_gr Total - 10.45 51.08 1951 0.0000 0.0000 0.0000 0.0220 0.0050 0.0000 0.0090 0.0060 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0160 0.0050 0.0050 0.0000 0.0000 0.0680 - 10.45 51.08 1952 0.0000 0.0000 0.0000 0.0220 0.0050 0.0000 0.0090 0.0050 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0160 0.0050 0.0050 0.0000 0.0000 0.0670 - 10.45 51.08 1953 0.0000 0.0000 0.0000 0.0210 0.0050 0.0000 0.0090 0.0050 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0160 0.0050 0.0050 0.0000 0.0000 0.0660 - 10.45 51.08 1954 0.0000 0.0000 0.0000 0.0200 0.0050 0.0000 0.0090 0.0050 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0160 0.0050 0.0040 0.0000 0.0000 0.0640 - 10.45 51.08 1955 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 - 10.45 51.08 1956 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 - 10.45 51.08 1957 0.0000 0.0360 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0360 - 10.45 51.08 1958 0.0000 0.0370 0.0520 0.0430 0.0230 0.0000 0.0130 0.0320 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0480 0.0000 0.0000 0.0000 0.0420 0.0310 0.0310 0.0000 0.0000 0.3520 - 10.45 51.08 1959 0.0000 0.0370 0.0520 0.0400 0.0230 0.0410 0.0130 0.0320 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0480 0.0000 0.0000 0.0000 0.0420 0.0310 0.0310 0.0000 0.0000 0.3900 - 10.45 51.08 1960 0.0000 0.0370 0.0520 0.0480 0.0240 0.0410 0.0130 0.0330 0.0000 0.0000 0.0090 0.0000 0.0290 0.0000 0.0490 0.0000 0.0000 0.0000 0.0430 0.0330 0.0320 0.0000 0.0000 0.4430 - 10.45 51.08 1961 0.0000 0.0370 0.0510 0.0470 0.0240 0.0420 0.0130 0.0330 0.0000 0.0000 0.0090 0.0000 0.0290 0.0000 0.0490 0.0000 0.0000 0.0000 0.0430 0.0330 0.0320 0.0000 0.0000 0.4420 - 10.45 51.08 1962 0.0000 0.0370 0.0510 0.0470 0.0240 0.0420 0.0130 0.0330 0.0000 0.0000 0.0090 0.0410 0.0290 0.0000 0.0490 0.0000 0.0000 0.0000 0.0430 0.0330 0.0320 0.0000 0.0000 0.4830 - 10.45 51.08 1963 0.0000 0.0370 0.0500 0.0470 0.0240 0.0410 0.0130 0.0330 0.0000 0.0000 0.0090 0.0410 0.0290 0.0000 0.0490 0.0000 0.0000 0.0000 0.0430 0.0330 0.0320 0.0000 0.0000 0.4810 - 10.45 51.08 1964 0.0000 0.0320 0.0470 0.0460 0.0240 0.0400 0.0130 0.0330 0.0000 0.0000 0.0090 0.0410 0.0290 0.0000 0.0480 0.0000 0.0000 0.0000 0.0430 0.0330 0.0320 0.0000 0.0000 0.4700 - 10.45 51.08 1965 0.0000 0.0260 0.0460 0.0450 0.0240 0.0400 0.0130 0.0330 0.0000 0.0000 0.0090 0.0410 0.0290 0.0000 0.0480 0.0000 0.0000 0.0000 0.0430 0.0330 0.0310 0.0000 0.0000 0.4610 - 10.45 51.08 1966 0.0000 0.0220 0.0460 0.0450 0.0240 0.0400 0.0130 0.0330 0.0000 0.0000 0.0090 0.0410 0.0290 0.0000 0.0470 0.0000 0.0000 0.0000 0.0430 0.0330 0.0310 0.0000 0.0000 0.4560 - 10.45 51.08 1967 0.0000 0.0150 0.0400 0.0450 0.0240 0.0400 0.0130 0.0320 0.0000 0.0000 0.0090 0.0410 0.0290 0.0000 0.0440 0.0000 0.0000 0.0000 0.0430 0.0320 0.0310 0.0000 0.0000 0.4380 - 10.45 51.08 1968 0.0000 0.0110 0.0400 0.0450 0.0240 0.0380 0.0130 0.0310 0.0000 0.0000 0.0090 0.0390 0.0290 0.0000 0.0410 0.0000 0.0000 0.0000 0.0430 0.0320 0.0310 0.0000 0.0000 0.4260 - 10.45 51.08 1969 0.0000 0.0080 0.0380 0.0440 0.0240 0.0360 0.0130 0.0310 0.0000 0.0000 0.0090 0.0390 0.0280 0.0000 0.0380 0.0000 0.0000 0.0000 0.0420 0.0310 0.0310 0.0000 0.0000 0.4120 - 10.45 51.08 1970 0.0000 0.0050 0.0380 0.0420 0.0240 0.0350 0.0130 0.0310 0.0000 0.0000 0.0090 0.0380 0.0270 0.0000 0.0350 0.0000 0.0000 0.0000 0.0420 0.0290 0.0310 0.0000 0.0000 0.3990 - 10.45 51.08 1971 0.0000 0.0000 0.0380 0.0390 0.0220 0.0280 0.0130 0.0310 0.0000 0.0000 0.0090 0.0000 0.0250 0.0000 0.0310 0.0000 0.0000 0.0000 0.0410 0.0290 0.0310 0.0000 0.0000 0.3370 - 10.45 51.08 1972 0.0000 0.0000 0.0360 0.0390 0.0210 0.0250 0.0130 0.0310 0.0000 0.0000 0.0090 0.0000 0.0250 0.0000 0.0300 0.0000 0.0000 0.0000 0.0410 0.0280 0.0310 0.0000 0.0000 0.3290 - 10.45 51.08 1973 0.0000 0.0000 0.0330 0.0370 0.0200 0.0170 0.0130 0.0300 0.0000 0.0000 0.0090 0.0000 0.0250 0.0000 0.0250 0.0000 0.0000 0.0000 0.0390 0.0250 0.0310 0.0000 0.0000 0.3040 - 10.45 51.08 1974 0.0000 0.0000 0.0310 0.0360 0.0180 0.0160 0.0130 0.0290 0.0000 0.0000 0.0000 0.0000 0.0230 0.0000 0.0240 0.0000 0.0000 0.0000 0.0390 0.0250 0.0290 0.0000 0.0000 0.2830 - 10.45 51.08 1975 0.0000 0.0000 0.0280 0.0360 0.0180 0.0150 0.0130 0.0290 0.0000 0.0000 0.0000 0.0000 0.0220 0.0000 0.0230 0.0000 0.0000 0.0000 0.0380 0.0240 0.0270 0.0000 0.0000 0.2730 - 10.45 51.08 1976 0.0000 0.0000 0.0260 0.0340 0.0170 0.0130 0.0130 0.0280 0.0000 0.0000 0.0000 0.0000 0.0210 0.0000 0.0200 0.0000 0.0000 0.0000 0.0360 0.0230 0.0260 0.0000 0.0000 0.2570 - 10.45 51.08 1977 0.0000 0.0000 0.0220 0.0340 0.0170 0.0090 0.0130 0.0280 0.0000 0.0000 0.0000 0.0000 0.0210 0.0000 0.0170 0.0000 0.0000 0.0000 0.0360 0.0220 0.0260 0.0000 0.0000 0.2450 - 10.45 51.08 1978 0.0000 0.0000 0.0210 0.0330 0.0170 0.0090 0.0130 0.0280 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0150 0.0000 0.0000 0.0000 0.0360 0.0210 0.0250 0.0000 0.0000 0.2180 - 10.45 51.08 1979 0.0000 0.0000 0.0180 0.0330 0.0160 0.0080 0.0130 0.0280 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0150 0.0000 0.0000 0.0000 0.0350 0.0190 0.0250 0.0000 0.0000 0.2100 - 10.45 51.08 1980 0.0000 0.0000 0.0170 0.0330 0.0150 0.0080 0.0130 0.0280 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0130 0.0000 0.0000 0.0000 0.0340 0.0190 0.0250 0.0000 0.0000 0.2050 - 10.45 51.08 1981 0.0000 0.0000 0.0150 0.0330 0.0150 0.0070 0.0130 0.0270 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0130 0.0000 0.0000 0.0000 0.0330 0.0190 0.0250 0.0000 0.0000 0.2000 - 10.45 51.08 1982 0.0000 0.0000 0.0120 0.0320 0.0150 0.0070 0.0130 0.0260 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0110 0.0000 0.0000 0.0000 0.0310 0.0190 0.0240 0.0000 0.0000 0.1900 - 10.45 51.08 1983 0.0000 0.0000 0.0110 0.0320 0.0150 0.0000 0.0130 0.0260 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0100 0.0000 0.0000 0.0000 0.0310 0.0190 0.0230 0.0000 0.0000 0.1800 - 10.45 51.08 1984 0.0000 0.0000 0.0100 0.0320 0.0150 0.0000 0.0130 0.0240 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0090 0.0000 0.0000 0.0000 0.0300 0.0190 0.0230 0.0000 0.0000 0.1750 - 10.45 51.08 1985 0.0000 0.0000 0.0090 0.0320 0.0150 0.0000 0.0130 0.0230 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0070 0.0000 0.0000 0.0000 0.0290 0.0180 0.0230 0.0000 0.0000 0.1690 - 10.45 51.08 1986 0.0000 0.0000 0.0060 0.0320 0.0150 0.0000 0.0120 0.0230 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0060 0.0000 0.0000 0.0000 0.0280 0.0180 0.0230 0.0000 0.0000 0.1630 - 10.45 51.08 1987 0.0000 0.0000 0.0060 0.0310 0.0150 0.0000 0.0120 0.0220 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0060 0.0000 0.0000 0.0000 0.0280 0.0180 0.0230 0.0000 0.0000 0.1610 - 10.45 51.08 1988 0.0000 0.0000 0.0050 0.0300 0.0150 0.0000 0.0120 0.0200 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0060 0.0000 0.0000 0.0000 0.0260 0.0170 0.0230 0.0000 0.0000 0.1540 - 10.45 51.08 1989 0.0000 0.0000 0.0050 0.0300 0.0140 0.0000 0.0120 0.0200 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0060 0.0000 0.0000 0.0000 0.0260 0.0170 0.0230 0.0000 0.0000 0.1530 - 10.45 51.08 1990 0.0000 0.0000 0.0030 0.0300 0.0140 0.0000 0.0120 0.0200 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0060 0.0000 0.0000 0.0000 0.0260 0.0160 0.0230 0.0000 0.0000 0.1500 - 10.45 51.08 1991 0.0000 0.0000 0.0020 0.0300 0.0130 0.0000 0.0120 0.0190 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0030 0.0000 0.0000 0.0000 0.0260 0.0160 0.0230 0.0000 0.0000 0.1440 - 10.45 51.08 1992 0.0000 0.0000 0.0010 0.0300 0.0130 0.0000 0.0120 0.0180 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0020 0.0000 0.0000 0.0000 0.0260 0.0150 0.0230 0.0000 0.0000 0.1400 - 10.45 51.08 1993 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 - 10.45 51.08 1994 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 - 10.45 51.08 1995 0.0000 0.0340 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0340 - 10.45 51.08 1996 0.0000 0.0350 0.0000 0.0360 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0710 - 10.45 51.08 1997 0.0000 0.0350 0.0490 0.0360 0.0310 0.0260 0.0160 0.0260 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0380 0.0000 0.0000 0.0250 0.0230 0.0290 0.0500 0.0000 0.0000 0.3840 - 10.45 51.08 1998 0.0000 0.0350 0.0490 0.0360 0.0360 0.0260 0.0180 0.0280 0.0000 0.0000 0.0100 0.0000 0.0300 0.0000 0.0390 0.0000 0.0000 0.0260 0.0240 0.0310 0.0500 0.0000 0.0000 0.4380 - 10.45 51.08 1999 0.0000 0.0350 0.0490 0.0360 0.0360 0.0260 0.0180 0.0280 0.0000 0.0000 0.0100 0.0330 0.0300 0.0000 0.0390 0.0000 0.0000 0.0260 0.0240 0.0300 0.0500 0.0000 0.0000 0.4700 - 10.45 51.08 2000 0.0000 0.0350 0.0470 0.0360 0.0360 0.0260 0.0180 0.0280 0.0000 0.0000 0.0100 0.0330 0.0300 0.0000 0.0390 0.0000 0.0000 0.0260 0.0230 0.0300 0.0500 0.0000 0.0000 0.4670 - 10.45 51.08 2001 0.0000 0.0350 0.0460 0.0360 0.0360 0.0260 0.0180 0.0280 0.0000 0.0000 0.0100 0.0330 0.0300 0.0000 0.0390 0.0000 0.0000 0.0260 0.0230 0.0300 0.0500 0.0000 0.0000 0.4660 - 10.45 51.08 2002 0.0000 0.0350 0.0460 0.0360 0.0360 0.0260 0.0180 0.0280 0.0000 0.0000 0.0100 0.0320 0.0300 0.0000 0.0390 0.0000 0.0000 0.0250 0.0230 0.0300 0.0500 0.0000 0.0000 0.4640 - 10.45 51.08 2003 0.0000 0.0330 0.0460 0.0360 0.0360 0.0260 0.0180 0.0270 0.0000 0.0000 0.0100 0.0310 0.0300 0.0000 0.0380 0.0000 0.0000 0.0250 0.0230 0.0300 0.0500 0.0000 0.0000 0.4590 - 10.45 51.08 2004 0.0000 0.0220 0.0430 0.0350 0.0340 0.0260 0.0180 0.0270 0.0000 0.0000 0.0090 0.0310 0.0300 0.0000 0.0340 0.0000 0.0000 0.0250 0.0220 0.0300 0.0500 0.0000 0.0000 0.4360 - 10.45 51.08 2005 0.0000 0.0160 0.0410 0.0350 0.0340 0.0240 0.0180 0.0270 0.0000 0.0000 0.0090 0.0300 0.0300 0.0000 0.0330 0.0000 0.0000 0.0250 0.0210 0.0290 0.0490 0.0000 0.0000 0.4210 - 10.45 51.08 2006 0.0000 0.0090 0.0380 0.0340 0.0330 0.0240 0.0180 0.0270 0.0000 0.0000 0.0090 0.0290 0.0290 0.0000 0.0310 0.0000 0.0000 0.0250 0.0210 0.0280 0.0480 0.0000 0.0000 0.4030 - 10.45 51.08 2007 0.0000 0.0070 0.0370 0.0340 0.0330 0.0240 0.0180 0.0270 0.0000 0.0000 0.0090 0.0280 0.0260 0.0000 0.0250 0.0000 0.0000 0.0240 0.0210 0.0270 0.0480 0.0000 0.0000 0.3880 - 10.45 51.08 2008 0.0000 0.0000 0.0370 0.0340 0.0330 0.0220 0.0180 0.0250 0.0000 0.0000 0.0090 0.0000 0.0250 0.0000 0.0250 0.0000 0.0000 0.0230 0.0200 0.0260 0.0480 0.0000 0.0000 0.3450 - 10.45 51.08 2009 0.0000 0.0000 0.0370 0.0340 0.0330 0.0190 0.0180 0.0240 0.0000 0.0000 0.0090 0.0000 0.0250 0.0000 0.0250 0.0000 0.0000 0.0230 0.0200 0.0260 0.0470 0.0000 0.0000 0.3400 - 10.45 51.08 2010 0.0000 0.0000 0.0340 0.0340 0.0320 0.0170 0.0180 0.0240 0.0000 0.0000 0.0000 0.0000 0.0250 0.0000 0.0240 0.0000 0.0000 0.0230 0.0190 0.0260 0.0460 0.0000 0.0000 0.3220 - 10.45 51.08 2011 0.0000 0.0000 0.0310 0.0330 0.0300 0.0150 0.0170 0.0240 0.0000 0.0000 0.0000 0.0000 0.0250 0.0000 0.0240 0.0000 0.0000 0.0230 0.0190 0.0250 0.0450 0.0000 0.0000 0.3110 - 10.45 51.08 2012 0.0000 0.0000 0.0300 0.0330 0.0270 0.0140 0.0160 0.0240 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0220 0.0000 0.0000 0.0230 0.0180 0.0250 0.0440 0.0000 0.0000 0.2760 diff --git a/rLPJGUESS/inst/extdata/outputsForTests/run_distinterval/outDirectory/firert.out b/rLPJGUESS/inst/extdata/outputsForTests/run_distinterval/outDirectory/firert.out deleted file mode 100644 index 94fc9b6..0000000 --- a/rLPJGUESS/inst/extdata/outputsForTests/run_distinterval/outDirectory/firert.out +++ /dev/null @@ -1,63 +0,0 @@ - Lon Lat Year FireRT - 10.45 51.08 1951 785.2 - 10.45 51.08 1952 132.6 - 10.45 51.08 1953 134.7 - 10.45 51.08 1954 220.2 - 10.45 51.08 1955 1000.0 - 10.45 51.08 1956 1000.0 - 10.45 51.08 1957 1000.0 - 10.45 51.08 1958 240.3 - 10.45 51.08 1959 109.0 - 10.45 51.08 1960 146.8 - 10.45 51.08 1961 123.5 - 10.45 51.08 1962 118.1 - 10.45 51.08 1963 276.6 - 10.45 51.08 1964 117.2 - 10.45 51.08 1965 152.0 - 10.45 51.08 1966 249.5 - 10.45 51.08 1967 140.8 - 10.45 51.08 1968 118.6 - 10.45 51.08 1969 170.8 - 10.45 51.08 1970 152.9 - 10.45 51.08 1971 115.0 - 10.45 51.08 1972 1000.0 - 10.45 51.08 1973 117.2 - 10.45 51.08 1974 487.4 - 10.45 51.08 1975 133.7 - 10.45 51.08 1976 111.5 - 10.45 51.08 1977 265.2 - 10.45 51.08 1978 138.8 - 10.45 51.08 1979 138.5 - 10.45 51.08 1980 118.3 - 10.45 51.08 1981 661.9 - 10.45 51.08 1982 108.0 - 10.45 51.08 1983 110.6 - 10.45 51.08 1984 1000.0 - 10.45 51.08 1985 89.6 - 10.45 51.08 1986 147.4 - 10.45 51.08 1987 1000.0 - 10.45 51.08 1988 98.6 - 10.45 51.08 1989 116.3 - 10.45 51.08 1990 118.3 - 10.45 51.08 1991 99.9 - 10.45 51.08 1992 122.3 - 10.45 51.08 1993 229.4 - 10.45 51.08 1994 1000.0 - 10.45 51.08 1995 1000.0 - 10.45 51.08 1996 1000.0 - 10.45 51.08 1997 120.1 - 10.45 51.08 1998 152.7 - 10.45 51.08 1999 761.3 - 10.45 51.08 2000 132.1 - 10.45 51.08 2001 200.6 - 10.45 51.08 2002 1000.0 - 10.45 51.08 2003 118.2 - 10.45 51.08 2004 117.9 - 10.45 51.08 2005 117.8 - 10.45 51.08 2006 124.7 - 10.45 51.08 2007 230.5 - 10.45 51.08 2008 116.8 - 10.45 51.08 2009 132.1 - 10.45 51.08 2010 197.5 - 10.45 51.08 2011 101.4 - 10.45 51.08 2012 115.6 diff --git a/rLPJGUESS/inst/extdata/outputsForTests/run_distinterval/outDirectory/fpc.out b/rLPJGUESS/inst/extdata/outputsForTests/run_distinterval/outDirectory/fpc.out deleted file mode 100644 index a046413..0000000 --- a/rLPJGUESS/inst/extdata/outputsForTests/run_distinterval/outDirectory/fpc.out +++ /dev/null @@ -1,63 +0,0 @@ - Lon Lat Year Abi_alb BES Bet_pen Bet_pub Car_bet Cor_ave Fag_syl Fra_exc Jun_oxy MRS Pic_abi Pic_sit Pin_syl Pin_hal Pop_tre Que_coc Que_ile Que_pub Que_rob Til_cor Ulm_gla C3_gr C4_gr Total - 10.45 51.08 1951 0.000 0.000 0.000 0.708 0.012 0.000 0.074 0.019 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.051 0.004 0.016 0.000 0.000 0.884 - 10.45 51.08 1952 0.000 0.000 0.000 0.710 0.011 0.000 0.075 0.016 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.050 0.004 0.016 0.000 0.000 0.881 - 10.45 51.08 1953 0.000 0.000 0.000 0.683 0.011 0.000 0.076 0.016 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.050 0.004 0.016 0.000 0.000 0.857 - 10.45 51.08 1954 0.000 0.000 0.000 0.651 0.011 0.000 0.077 0.015 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.049 0.004 0.012 0.000 0.000 0.820 - 10.45 51.08 1955 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1956 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1957 0.000 0.004 0.022 0.021 0.010 0.016 0.006 0.014 0.000 0.000 0.002 0.007 0.006 0.000 0.020 0.000 0.000 0.000 0.018 0.013 0.013 0.734 0.000 0.905 - 10.45 51.08 1958 0.000 0.006 0.041 0.041 0.018 0.027 0.010 0.025 0.000 0.000 0.003 0.012 0.009 0.000 0.037 0.000 0.000 0.000 0.033 0.025 0.024 0.693 0.000 1.005 - 10.45 51.08 1959 0.000 0.008 0.065 0.063 0.029 0.042 0.016 0.041 0.000 0.000 0.004 0.016 0.013 0.000 0.058 0.000 0.000 0.000 0.053 0.037 0.039 0.365 0.000 0.848 - 10.45 51.08 1960 0.000 0.009 0.087 0.090 0.040 0.055 0.022 0.056 0.000 0.000 0.005 0.020 0.016 0.000 0.080 0.000 0.000 0.000 0.074 0.051 0.054 0.091 0.000 0.750 - 10.45 51.08 1961 0.000 0.009 0.108 0.116 0.051 0.067 0.029 0.071 0.000 0.000 0.006 0.023 0.019 0.000 0.101 0.000 0.000 0.000 0.094 0.064 0.069 0.000 0.000 0.826 - 10.45 51.08 1962 0.000 0.010 0.125 0.140 0.059 0.075 0.033 0.083 0.000 0.000 0.006 0.024 0.020 0.000 0.116 0.000 0.000 0.000 0.109 0.074 0.080 0.000 0.000 0.954 - 10.45 51.08 1963 0.000 0.009 0.138 0.164 0.067 0.079 0.038 0.094 0.000 0.000 0.006 0.024 0.020 0.000 0.130 0.000 0.000 0.000 0.123 0.083 0.091 0.000 0.000 1.067 - 10.45 51.08 1964 0.000 0.008 0.140 0.181 0.073 0.080 0.042 0.102 0.000 0.000 0.006 0.023 0.020 0.000 0.136 0.000 0.000 0.000 0.134 0.089 0.099 0.000 0.000 1.134 - 10.45 51.08 1965 0.000 0.006 0.146 0.197 0.078 0.081 0.045 0.110 0.000 0.000 0.006 0.022 0.020 0.000 0.144 0.000 0.000 0.000 0.144 0.094 0.103 0.000 0.000 1.196 - 10.45 51.08 1966 0.000 0.005 0.155 0.218 0.084 0.081 0.049 0.118 0.000 0.000 0.006 0.021 0.019 0.000 0.149 0.000 0.000 0.000 0.155 0.100 0.111 0.000 0.000 1.270 - 10.45 51.08 1967 0.000 0.003 0.139 0.236 0.088 0.079 0.052 0.120 0.000 0.000 0.006 0.020 0.018 0.000 0.144 0.000 0.000 0.000 0.163 0.100 0.116 0.000 0.000 1.284 - 10.45 51.08 1968 0.000 0.002 0.141 0.251 0.090 0.071 0.054 0.122 0.000 0.000 0.005 0.014 0.017 0.000 0.137 0.000 0.000 0.000 0.167 0.101 0.119 0.000 0.000 1.292 - 10.45 51.08 1969 0.000 0.001 0.136 0.267 0.092 0.066 0.056 0.126 0.000 0.000 0.004 0.009 0.015 0.000 0.128 0.000 0.000 0.000 0.171 0.101 0.123 0.000 0.000 1.297 - 10.45 51.08 1970 0.000 0.001 0.138 0.276 0.095 0.061 0.058 0.130 0.000 0.000 0.004 0.003 0.013 0.000 0.119 0.000 0.000 0.000 0.176 0.097 0.127 0.000 0.000 1.297 - 10.45 51.08 1971 0.000 0.000 0.131 0.265 0.088 0.043 0.057 0.127 0.000 0.000 0.002 0.002 0.010 0.000 0.100 0.000 0.000 0.000 0.168 0.093 0.124 0.000 0.000 1.210 - 10.45 51.08 1972 0.000 0.000 0.128 0.290 0.087 0.037 0.060 0.133 0.000 0.000 0.002 0.001 0.009 0.000 0.098 0.000 0.000 0.000 0.175 0.092 0.129 0.000 0.000 1.242 - 10.45 51.08 1973 0.000 0.000 0.115 0.287 0.081 0.022 0.060 0.126 0.000 0.000 0.001 0.000 0.007 0.000 0.078 0.000 0.000 0.000 0.164 0.079 0.126 0.000 0.000 1.145 - 10.45 51.08 1974 0.000 0.000 0.112 0.307 0.077 0.020 0.064 0.128 0.000 0.000 0.000 0.000 0.006 0.000 0.077 0.000 0.000 0.000 0.172 0.082 0.124 0.000 0.000 1.169 - 10.45 51.08 1975 0.000 0.000 0.102 0.328 0.078 0.017 0.066 0.132 0.000 0.000 0.000 0.000 0.005 0.000 0.074 0.000 0.000 0.000 0.173 0.078 0.123 0.000 0.000 1.176 - 10.45 51.08 1976 0.000 0.000 0.088 0.318 0.071 0.012 0.064 0.122 0.000 0.000 0.000 0.000 0.002 0.000 0.059 0.000 0.000 0.000 0.157 0.070 0.113 0.000 0.000 1.077 - 10.45 51.08 1977 0.000 0.000 0.076 0.346 0.074 0.008 0.068 0.127 0.000 0.000 0.000 0.000 0.001 0.000 0.051 0.000 0.000 0.000 0.164 0.069 0.118 0.000 0.000 1.104 - 10.45 51.08 1978 0.000 0.000 0.074 0.362 0.076 0.007 0.071 0.132 0.000 0.000 0.000 0.000 0.000 0.000 0.046 0.000 0.000 0.000 0.170 0.066 0.118 0.000 0.000 1.121 - 10.45 51.08 1979 0.000 0.000 0.063 0.384 0.073 0.006 0.074 0.135 0.000 0.000 0.000 0.000 0.000 0.000 0.045 0.000 0.000 0.000 0.168 0.060 0.120 0.000 0.000 1.128 - 10.45 51.08 1980 0.000 0.000 0.059 0.406 0.069 0.005 0.076 0.137 0.000 0.000 0.000 0.000 0.000 0.000 0.038 0.000 0.000 0.000 0.166 0.059 0.122 0.000 0.000 1.137 - 10.45 51.08 1981 0.000 0.000 0.052 0.435 0.070 0.004 0.079 0.135 0.000 0.000 0.000 0.000 0.000 0.000 0.037 0.000 0.000 0.000 0.165 0.059 0.125 0.000 0.000 1.162 - 10.45 51.08 1982 0.000 0.000 0.037 0.431 0.066 0.002 0.077 0.123 0.000 0.000 0.000 0.000 0.000 0.000 0.028 0.000 0.000 0.000 0.147 0.053 0.114 0.000 0.000 1.079 - 10.45 51.08 1983 0.000 0.000 0.033 0.452 0.067 0.000 0.079 0.124 0.000 0.000 0.000 0.000 0.000 0.000 0.025 0.000 0.000 0.000 0.148 0.052 0.110 0.000 0.000 1.091 - 10.45 51.08 1984 0.000 0.000 0.029 0.474 0.067 0.000 0.081 0.115 0.000 0.000 0.000 0.000 0.000 0.000 0.021 0.000 0.000 0.000 0.144 0.050 0.110 0.000 0.000 1.092 - 10.45 51.08 1985 0.000 0.000 0.025 0.496 0.067 0.000 0.083 0.111 0.000 0.000 0.000 0.000 0.000 0.000 0.016 0.000 0.000 0.000 0.140 0.046 0.111 0.000 0.000 1.095 - 10.45 51.08 1986 0.000 0.000 0.017 0.524 0.067 0.000 0.079 0.113 0.000 0.000 0.000 0.000 0.000 0.000 0.013 0.000 0.000 0.000 0.137 0.045 0.113 0.000 0.000 1.108 - 10.45 51.08 1987 0.000 0.000 0.016 0.535 0.067 0.000 0.081 0.108 0.000 0.000 0.000 0.000 0.000 0.000 0.013 0.000 0.000 0.000 0.138 0.044 0.113 0.000 0.000 1.114 - 10.45 51.08 1988 0.000 0.000 0.013 0.532 0.065 0.000 0.081 0.096 0.000 0.000 0.000 0.000 0.000 0.000 0.012 0.000 0.000 0.000 0.125 0.039 0.110 0.000 0.000 1.073 - 10.45 51.08 1989 0.000 0.000 0.012 0.544 0.059 0.000 0.081 0.094 0.000 0.000 0.000 0.000 0.000 0.000 0.011 0.000 0.000 0.000 0.122 0.037 0.108 0.000 0.000 1.066 - 10.45 51.08 1990 0.000 0.000 0.007 0.572 0.059 0.000 0.083 0.095 0.000 0.000 0.000 0.000 0.000 0.000 0.010 0.000 0.000 0.000 0.123 0.034 0.109 0.000 0.000 1.092 - 10.45 51.08 1991 0.000 0.000 0.004 0.579 0.052 0.000 0.081 0.085 0.000 0.000 0.000 0.000 0.000 0.000 0.005 0.000 0.000 0.000 0.116 0.031 0.103 0.000 0.000 1.056 - 10.45 51.08 1992 0.000 0.000 0.002 0.594 0.050 0.000 0.081 0.078 0.000 0.000 0.000 0.000 0.000 0.000 0.003 0.000 0.000 0.000 0.113 0.027 0.100 0.000 0.000 1.049 - 10.45 51.08 1993 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1994 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1995 0.000 0.004 0.021 0.017 0.013 0.010 0.007 0.011 0.000 0.000 0.002 0.006 0.006 0.000 0.017 0.000 0.000 0.011 0.010 0.012 0.022 0.750 0.000 0.920 - 10.45 51.08 1996 0.000 0.006 0.037 0.031 0.025 0.017 0.013 0.021 0.000 0.000 0.003 0.009 0.010 0.000 0.029 0.000 0.000 0.020 0.018 0.023 0.039 0.639 0.000 0.940 - 10.45 51.08 1997 0.000 0.007 0.059 0.051 0.040 0.026 0.021 0.033 0.000 0.000 0.004 0.013 0.014 0.000 0.046 0.000 0.000 0.031 0.029 0.036 0.061 0.473 0.000 0.943 - 10.45 51.08 1998 0.000 0.009 0.083 0.074 0.057 0.035 0.030 0.046 0.000 0.000 0.006 0.017 0.017 0.000 0.064 0.000 0.000 0.044 0.040 0.050 0.086 0.022 0.000 0.680 - 10.45 51.08 1999 0.000 0.009 0.108 0.098 0.074 0.043 0.039 0.060 0.000 0.000 0.007 0.019 0.020 0.000 0.083 0.000 0.000 0.057 0.053 0.063 0.112 0.000 0.000 0.846 - 10.45 51.08 2000 0.000 0.009 0.122 0.120 0.088 0.049 0.046 0.072 0.000 0.000 0.007 0.020 0.021 0.000 0.098 0.000 0.000 0.068 0.060 0.074 0.133 0.000 0.000 0.988 - 10.45 51.08 2001 0.000 0.009 0.134 0.140 0.099 0.052 0.052 0.081 0.000 0.000 0.007 0.020 0.021 0.000 0.110 0.000 0.000 0.077 0.068 0.083 0.151 0.000 0.000 1.105 - 10.45 51.08 2002 0.000 0.009 0.144 0.158 0.106 0.053 0.057 0.088 0.000 0.000 0.007 0.019 0.020 0.000 0.118 0.000 0.000 0.080 0.073 0.089 0.164 0.000 0.000 1.186 - 10.45 51.08 2003 0.000 0.008 0.148 0.170 0.110 0.052 0.059 0.088 0.000 0.000 0.007 0.017 0.019 0.000 0.117 0.000 0.000 0.083 0.076 0.091 0.171 0.000 0.000 1.218 - 10.45 51.08 2004 0.000 0.005 0.142 0.178 0.107 0.050 0.061 0.091 0.000 0.000 0.006 0.014 0.018 0.000 0.107 0.000 0.000 0.086 0.076 0.093 0.177 0.000 0.000 1.213 - 10.45 51.08 2005 0.000 0.003 0.142 0.196 0.112 0.045 0.065 0.096 0.000 0.000 0.005 0.011 0.017 0.000 0.108 0.000 0.000 0.091 0.076 0.096 0.184 0.000 0.000 1.249 - 10.45 51.08 2006 0.000 0.002 0.135 0.207 0.116 0.043 0.068 0.101 0.000 0.000 0.005 0.006 0.015 0.000 0.107 0.000 0.000 0.096 0.080 0.096 0.189 0.000 0.000 1.264 - 10.45 51.08 2007 0.000 0.001 0.139 0.230 0.122 0.042 0.073 0.108 0.000 0.000 0.004 0.004 0.013 0.000 0.091 0.000 0.000 0.102 0.086 0.098 0.204 0.000 0.000 1.315 - 10.45 51.08 2008 0.000 0.000 0.139 0.243 0.122 0.036 0.074 0.101 0.000 0.000 0.003 0.002 0.010 0.000 0.090 0.000 0.000 0.099 0.086 0.093 0.206 0.000 0.000 1.304 - 10.45 51.08 2009 0.000 0.000 0.139 0.259 0.124 0.028 0.076 0.098 0.000 0.000 0.002 0.001 0.009 0.000 0.090 0.000 0.000 0.101 0.088 0.094 0.206 0.000 0.000 1.314 - 10.45 51.08 2010 0.000 0.000 0.130 0.281 0.126 0.024 0.079 0.101 0.000 0.000 0.000 0.000 0.006 0.000 0.087 0.000 0.000 0.104 0.086 0.095 0.209 0.000 0.000 1.328 - 10.45 51.08 2011 0.000 0.000 0.118 0.292 0.119 0.019 0.080 0.103 0.000 0.000 0.000 0.000 0.003 0.000 0.086 0.000 0.000 0.106 0.088 0.094 0.208 0.000 0.000 1.317 - 10.45 51.08 2012 0.000 0.000 0.112 0.307 0.117 0.015 0.080 0.102 0.000 0.000 0.000 0.000 0.000 0.000 0.076 0.000 0.000 0.106 0.083 0.092 0.203 0.000 0.000 1.295 diff --git a/rLPJGUESS/inst/extdata/outputsForTests/run_distinterval/outDirectory/lai.out b/rLPJGUESS/inst/extdata/outputsForTests/run_distinterval/outDirectory/lai.out deleted file mode 100644 index dfb8b1d..0000000 --- a/rLPJGUESS/inst/extdata/outputsForTests/run_distinterval/outDirectory/lai.out +++ /dev/null @@ -1,63 +0,0 @@ - Lon Lat Year Abi_alb BES Bet_pen Bet_pub Car_bet Cor_ave Fag_syl Fra_exc Jun_oxy MRS Pic_abi Pic_sit Pin_syl Pin_hal Pop_tre Que_coc Que_ile Que_pub Que_rob Til_cor Ulm_gla C3_gr C4_gr Total - 10.45 51.08 1951 0.0000 0.0000 0.0000 2.8711 0.0276 0.0000 0.2573 0.0480 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.1279 0.0088 0.0400 0.0000 0.0000 3.3807 - 10.45 51.08 1952 0.0000 0.0000 0.0000 2.8889 0.0267 0.0000 0.2578 0.0387 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.1240 0.0085 0.0387 0.0000 0.0000 3.3833 - 10.45 51.08 1953 0.0000 0.0000 0.0000 2.8219 0.0268 0.0000 0.2643 0.0389 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.1245 0.0084 0.0389 0.0000 0.0000 3.3238 - 10.45 51.08 1954 0.0000 0.0000 0.0000 2.6928 0.0260 0.0000 0.2650 0.0380 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.1215 0.0081 0.0304 0.0000 0.0000 3.1818 - 10.45 51.08 1955 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 - 10.45 51.08 1956 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 - 10.45 51.08 1957 0.0000 0.0248 0.0898 0.0862 0.0398 0.0563 0.0226 0.0557 0.0000 0.0000 0.0081 0.0350 0.0238 0.0000 0.0829 0.0000 0.0000 0.0000 0.0731 0.0536 0.0539 2.6462 0.0000 3.3518 - 10.45 51.08 1958 0.0000 0.0373 0.1769 0.1807 0.0796 0.1032 0.0448 0.1109 0.0000 0.0000 0.0139 0.0610 0.0386 0.0000 0.1634 0.0000 0.0000 0.0000 0.1451 0.1082 0.1075 2.3624 0.0000 3.7336 - 10.45 51.08 1959 0.0000 0.0472 0.2988 0.2993 0.1359 0.1647 0.0764 0.1896 0.0000 0.0000 0.0194 0.0842 0.0556 0.0000 0.2660 0.0000 0.0000 0.0000 0.2488 0.1700 0.1827 0.9075 0.0000 3.1460 - 10.45 51.08 1960 0.0000 0.0555 0.4171 0.4435 0.1953 0.2230 0.1108 0.2727 0.0000 0.0000 0.0255 0.1088 0.0710 0.0000 0.3774 0.0000 0.0000 0.0000 0.3579 0.2426 0.2628 0.1903 0.0000 3.3544 - 10.45 51.08 1961 0.0000 0.0584 0.5260 0.5842 0.2540 0.2744 0.1460 0.3553 0.0000 0.0000 0.0295 0.1225 0.0797 0.0000 0.4852 0.0000 0.0000 0.0000 0.4662 0.3151 0.3425 0.0000 0.0000 4.0391 - 10.45 51.08 1962 0.0000 0.0573 0.6042 0.7080 0.2956 0.3049 0.1727 0.4142 0.0000 0.0000 0.0307 0.1234 0.0828 0.0000 0.5557 0.0000 0.0000 0.0000 0.5435 0.3638 0.3995 0.0000 0.0000 4.6562 - 10.45 51.08 1963 0.0000 0.0544 0.6574 0.8322 0.3339 0.3185 0.1986 0.4692 0.0000 0.0000 0.0306 0.1179 0.0827 0.0000 0.6143 0.0000 0.0000 0.0000 0.6155 0.4078 0.4527 0.0000 0.0000 5.1856 - 10.45 51.08 1964 0.0000 0.0423 0.6529 0.9121 0.3584 0.3125 0.2174 0.5049 0.0000 0.0000 0.0286 0.1062 0.0770 0.0000 0.6296 0.0000 0.0000 0.0000 0.6623 0.4281 0.4875 0.0000 0.0000 5.4197 - 10.45 51.08 1965 0.0000 0.0316 0.6632 0.9827 0.3784 0.3080 0.2343 0.5349 0.0000 0.0000 0.0272 0.0972 0.0737 0.0000 0.6482 0.0000 0.0000 0.0000 0.7016 0.4449 0.5003 0.0000 0.0000 5.6263 - 10.45 51.08 1966 0.0000 0.0234 0.6918 1.0830 0.4016 0.3018 0.2539 0.5697 0.0000 0.0000 0.0251 0.0836 0.0675 0.0000 0.6575 0.0000 0.0000 0.0000 0.7472 0.4635 0.5331 0.0000 0.0000 5.9025 - 10.45 51.08 1967 0.0000 0.0142 0.6067 1.1678 0.4128 0.2836 0.2668 0.5702 0.0000 0.0000 0.0231 0.0708 0.0620 0.0000 0.6147 0.0000 0.0000 0.0000 0.7717 0.4525 0.5510 0.0000 0.0000 5.8680 - 10.45 51.08 1968 0.0000 0.0088 0.5910 1.2214 0.4105 0.2435 0.2718 0.5657 0.0000 0.0000 0.0187 0.0425 0.0543 0.0000 0.5639 0.0000 0.0000 0.0000 0.7705 0.4401 0.5507 0.0000 0.0000 5.7535 - 10.45 51.08 1969 0.0000 0.0048 0.5558 1.2890 0.4152 0.2163 0.2807 0.5736 0.0000 0.0000 0.0142 0.0219 0.0458 0.0000 0.5109 0.0000 0.0000 0.0000 0.7771 0.4287 0.5584 0.0000 0.0000 5.6923 - 10.45 51.08 1970 0.0000 0.0019 0.5446 1.3245 0.4169 0.1911 0.2880 0.5778 0.0000 0.0000 0.0103 0.0074 0.0385 0.0000 0.4578 0.0000 0.0000 0.0000 0.7828 0.4020 0.5620 0.0000 0.0000 5.6055 - 10.45 51.08 1971 0.0000 0.0000 0.4897 1.2228 0.3679 0.1281 0.2736 0.5384 0.0000 0.0000 0.0058 0.0057 0.0268 0.0000 0.3612 0.0000 0.0000 0.0000 0.7121 0.3602 0.5230 0.0000 0.0000 5.0153 - 10.45 51.08 1972 0.0000 0.0000 0.4705 1.3600 0.3636 0.1059 0.2888 0.5590 0.0000 0.0000 0.0041 0.0040 0.0242 0.0000 0.3521 0.0000 0.0000 0.0000 0.7394 0.3536 0.5427 0.0000 0.0000 5.1679 - 10.45 51.08 1973 0.0000 0.0000 0.4046 1.3052 0.3248 0.0598 0.2770 0.5086 0.0000 0.0000 0.0016 0.0028 0.0182 0.0000 0.2651 0.0000 0.0000 0.0000 0.6612 0.2878 0.5093 0.0000 0.0000 4.6262 - 10.45 51.08 1974 0.0000 0.0000 0.3940 1.4359 0.3084 0.0527 0.2974 0.5202 0.0000 0.0000 0.0000 0.0015 0.0146 0.0000 0.2623 0.0000 0.0000 0.0000 0.6996 0.2987 0.5026 0.0000 0.0000 4.7879 - 10.45 51.08 1975 0.0000 0.0000 0.3524 1.5393 0.3113 0.0442 0.3070 0.5297 0.0000 0.0000 0.0000 0.0008 0.0115 0.0000 0.2462 0.0000 0.0000 0.0000 0.6941 0.2807 0.4932 0.0000 0.0000 4.8103 - 10.45 51.08 1976 0.0000 0.0000 0.2849 1.4272 0.2650 0.0293 0.2855 0.4635 0.0000 0.0000 0.0000 0.0004 0.0054 0.0000 0.1846 0.0000 0.0000 0.0000 0.5959 0.2362 0.4304 0.0000 0.0000 4.2085 - 10.45 51.08 1977 0.0000 0.0000 0.2469 1.5911 0.2774 0.0185 0.3057 0.4876 0.0000 0.0000 0.0000 0.0002 0.0028 0.0000 0.1599 0.0000 0.0000 0.0000 0.6270 0.2312 0.4528 0.0000 0.0000 4.4012 - 10.45 51.08 1978 0.0000 0.0000 0.2359 1.6879 0.2845 0.0164 0.3218 0.5039 0.0000 0.0000 0.0000 0.0001 0.0000 0.0000 0.1404 0.0000 0.0000 0.0000 0.6479 0.2217 0.4499 0.0000 0.0000 4.5105 - 10.45 51.08 1979 0.0000 0.0000 0.1986 1.7977 0.2701 0.0127 0.3330 0.5106 0.0000 0.0000 0.0000 0.0001 0.0000 0.0000 0.1366 0.0000 0.0000 0.0000 0.6383 0.1981 0.4559 0.0000 0.0000 4.5517 - 10.45 51.08 1980 0.0000 0.0000 0.1811 1.8997 0.2534 0.0106 0.3417 0.5132 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.1117 0.0000 0.0000 0.0000 0.6232 0.1904 0.4582 0.0000 0.0000 4.5833 - 10.45 51.08 1981 0.0000 0.0000 0.1573 2.0580 0.2570 0.0079 0.3560 0.5043 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.1089 0.0000 0.0000 0.0000 0.6163 0.1882 0.4669 0.0000 0.0000 4.7208 - 10.45 51.08 1982 0.0000 0.0000 0.1067 1.9457 0.2281 0.0034 0.3287 0.4332 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0771 0.0000 0.0000 0.0000 0.5165 0.1593 0.3999 0.0000 0.0000 4.1985 - 10.45 51.08 1983 0.0000 0.0000 0.0932 2.0403 0.2261 0.0000 0.3362 0.4329 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0667 0.0000 0.0000 0.0000 0.5162 0.1519 0.3830 0.0000 0.0000 4.2465 - 10.45 51.08 1984 0.0000 0.0000 0.0808 2.1329 0.2230 0.0000 0.3419 0.3959 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0566 0.0000 0.0000 0.0000 0.4949 0.1452 0.3794 0.0000 0.0000 4.2506 - 10.45 51.08 1985 0.0000 0.0000 0.0693 2.2345 0.2203 0.0000 0.3493 0.3770 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0416 0.0000 0.0000 0.0000 0.4753 0.1308 0.3770 0.0000 0.0000 4.2751 - 10.45 51.08 1986 0.0000 0.0000 0.0451 2.3763 0.2217 0.0000 0.3339 0.3809 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0344 0.0000 0.0000 0.0000 0.4637 0.1270 0.3809 0.0000 0.0000 4.3640 - 10.45 51.08 1987 0.0000 0.0000 0.0430 2.4409 0.2185 0.0000 0.3411 0.3613 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0323 0.0000 0.0000 0.0000 0.4599 0.1215 0.3777 0.0000 0.0000 4.3963 - 10.45 51.08 1988 0.0000 0.0000 0.0324 2.3938 0.2067 0.0000 0.3362 0.3135 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0289 0.0000 0.0000 0.0000 0.4076 0.1050 0.3606 0.0000 0.0000 4.1846 - 10.45 51.08 1989 0.0000 0.0000 0.0294 2.4066 0.1818 0.0000 0.3296 0.2983 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0261 0.0000 0.0000 0.0000 0.3878 0.0963 0.3431 0.0000 0.0000 4.0991 - 10.45 51.08 1990 0.0000 0.0000 0.0172 2.5530 0.1816 0.0000 0.3392 0.3001 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0249 0.0000 0.0000 0.0000 0.3901 0.0879 0.3451 0.0000 0.0000 4.2390 - 10.45 51.08 1991 0.0000 0.0000 0.0100 2.5166 0.1529 0.0000 0.3195 0.2603 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0108 0.0000 0.0000 0.0000 0.3562 0.0777 0.3151 0.0000 0.0000 4.0191 - 10.45 51.08 1992 0.0000 0.0000 0.0045 2.5521 0.1449 0.0000 0.3156 0.2352 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0065 0.0000 0.0000 0.0000 0.3398 0.0668 0.3006 0.0000 0.0000 3.9660 - 10.45 51.08 1993 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 - 10.45 51.08 1994 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 - 10.45 51.08 1995 0.0000 0.0234 0.0858 0.0699 0.0544 0.0361 0.0282 0.0460 0.0000 0.0000 0.0090 0.0281 0.0246 0.0000 0.0700 0.0000 0.0000 0.0442 0.0407 0.0509 0.0884 2.7709 0.0000 3.4706 - 10.45 51.08 1996 0.0000 0.0351 0.1633 0.1392 0.1110 0.0641 0.0572 0.0909 0.0000 0.0000 0.0153 0.0487 0.0391 0.0000 0.1280 0.0000 0.0000 0.0861 0.0793 0.1002 0.1695 2.0363 0.0000 3.3635 - 10.45 51.08 1997 0.0000 0.0471 0.2710 0.2420 0.1864 0.1014 0.0976 0.1525 0.0000 0.0000 0.0232 0.0728 0.0581 0.0000 0.2104 0.0000 0.0000 0.1444 0.1330 0.1648 0.2839 1.2794 0.0000 3.4681 - 10.45 51.08 1998 0.0000 0.0547 0.3976 0.3681 0.2764 0.1412 0.1462 0.2261 0.0000 0.0000 0.0301 0.0928 0.0739 0.0000 0.3070 0.0000 0.0000 0.2140 0.1972 0.2416 0.4205 0.0449 0.0000 3.2323 - 10.45 51.08 1999 0.0000 0.0580 0.5278 0.5044 0.3698 0.1770 0.1979 0.3033 0.0000 0.0000 0.0354 0.1068 0.0844 0.0000 0.4074 0.0000 0.0000 0.2873 0.2647 0.3129 0.5650 0.0000 0.0000 4.2020 - 10.45 51.08 2000 0.0000 0.0571 0.5982 0.6211 0.4411 0.1993 0.2394 0.3629 0.0000 0.0000 0.0376 0.1086 0.0887 0.0000 0.4797 0.0000 0.0000 0.3440 0.3034 0.3714 0.6774 0.0000 0.0000 4.9299 - 10.45 51.08 2001 0.0000 0.0522 0.6486 0.7274 0.4934 0.2112 0.2723 0.4093 0.0000 0.0000 0.0363 0.0997 0.0851 0.0000 0.5291 0.0000 0.0000 0.3884 0.3425 0.4130 0.7657 0.0000 0.0000 5.4742 - 10.45 51.08 2002 0.0000 0.0465 0.6782 0.8141 0.5232 0.2092 0.2942 0.4363 0.0000 0.0000 0.0341 0.0874 0.0789 0.0000 0.5515 0.0000 0.0000 0.3981 0.3654 0.4364 0.8182 0.0000 0.0000 5.7717 - 10.45 51.08 2003 0.0000 0.0385 0.6731 0.8514 0.5258 0.1945 0.3014 0.4246 0.0000 0.0000 0.0314 0.0732 0.0721 0.0000 0.5262 0.0000 0.0000 0.4032 0.3700 0.4284 0.8297 0.0000 0.0000 5.7435 - 10.45 51.08 2004 0.0000 0.0215 0.6228 0.8779 0.4960 0.1807 0.3090 0.4287 0.0000 0.0000 0.0239 0.0491 0.0623 0.0000 0.4631 0.0000 0.0000 0.4075 0.3571 0.4274 0.8397 0.0000 0.0000 5.5667 - 10.45 51.08 2005 0.0000 0.0124 0.6070 0.9646 0.5155 0.1574 0.3268 0.4481 0.0000 0.0000 0.0205 0.0326 0.0554 0.0000 0.4551 0.0000 0.0000 0.4265 0.3560 0.4352 0.8625 0.0000 0.0000 5.6756 - 10.45 51.08 2006 0.0000 0.0047 0.5651 1.0063 0.5234 0.1458 0.3402 0.4603 0.0000 0.0000 0.0152 0.0154 0.0467 0.0000 0.4409 0.0000 0.0000 0.4386 0.3661 0.4294 0.8701 0.0000 0.0000 5.6683 - 10.45 51.08 2007 0.0000 0.0020 0.5750 1.1326 0.5487 0.1381 0.3643 0.4968 0.0000 0.0000 0.0139 0.0090 0.0382 0.0000 0.3711 0.0000 0.0000 0.4707 0.3955 0.4312 0.9413 0.0000 0.0000 5.9285 - 10.45 51.08 2008 0.0000 0.0000 0.5503 1.1751 0.5344 0.1110 0.3624 0.4479 0.0000 0.0000 0.0086 0.0064 0.0288 0.0000 0.3517 0.0000 0.0000 0.4423 0.3846 0.3955 0.9231 0.0000 0.0000 5.7220 - 10.45 51.08 2009 0.0000 0.0000 0.5353 1.2405 0.5282 0.0838 0.3661 0.4267 0.0000 0.0000 0.0045 0.0044 0.0219 0.0000 0.3409 0.0000 0.0000 0.4411 0.3836 0.3885 0.9015 0.0000 0.0000 5.6671 - 10.45 51.08 2010 0.0000 0.0000 0.4895 1.3583 0.5329 0.0675 0.3778 0.4351 0.0000 0.0000 0.0000 0.0032 0.0144 0.0000 0.3232 0.0000 0.0000 0.4507 0.3723 0.3850 0.9013 0.0000 0.0000 5.7113 - 10.45 51.08 2011 0.0000 0.0000 0.4344 1.4068 0.4924 0.0512 0.3821 0.4340 0.0000 0.0000 0.0000 0.0015 0.0068 0.0000 0.3105 0.0000 0.0000 0.4511 0.3727 0.3683 0.8827 0.0000 0.0000 5.5944 - 10.45 51.08 2012 0.0000 0.0000 0.3937 1.4575 0.4716 0.0392 0.3766 0.4190 0.0000 0.0000 0.0000 0.0006 0.0000 0.0000 0.2638 0.0000 0.0000 0.4374 0.3424 0.3473 0.8369 0.0000 0.0000 5.3861 diff --git a/rLPJGUESS/inst/extdata/outputsForTests/run_distinterval/outDirectory/maet.out b/rLPJGUESS/inst/extdata/outputsForTests/run_distinterval/outDirectory/maet.out deleted file mode 100644 index 6a00aad..0000000 --- a/rLPJGUESS/inst/extdata/outputsForTests/run_distinterval/outDirectory/maet.out +++ /dev/null @@ -1,63 +0,0 @@ - Lon Lat Year Jan Feb Mar Apr May Jun Jul Aug Sep Oct Nov Dec - 10.45 51.08 1951 0.000 0.000 2.860 29.946 57.860 70.492 82.296 63.999 43.082 20.112 3.246 0.000 - 10.45 51.08 1952 0.000 0.000 0.894 35.741 64.063 79.457 82.568 58.043 24.498 12.743 0.787 0.000 - 10.45 51.08 1953 0.000 0.227 9.659 51.644 75.234 61.281 77.342 68.058 43.600 18.658 1.183 0.000 - 10.45 51.08 1954 0.000 0.000 2.314 21.915 69.399 75.121 51.602 56.827 36.104 17.217 4.469 0.000 - 10.45 51.08 1955 0.000 0.000 1.887 24.063 60.175 64.773 55.455 48.460 35.239 16.289 3.011 0.000 - 10.45 51.08 1956 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1957 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1958 0.041 1.534 3.314 22.638 61.228 64.601 77.436 67.909 39.354 13.094 1.535 0.111 - 10.45 51.08 1959 0.214 1.023 13.921 45.583 70.588 71.999 28.043 59.774 35.814 14.201 0.844 0.137 - 10.45 51.08 1960 0.125 0.274 4.920 25.494 55.473 83.950 62.393 52.228 30.338 12.200 3.054 0.118 - 10.45 51.08 1961 0.013 0.871 10.090 25.377 39.669 66.813 57.900 51.464 41.305 16.592 0.130 0.051 - 10.45 51.08 1962 0.034 0.194 1.248 19.951 43.224 73.639 60.868 62.141 37.615 16.944 2.441 0.007 - 10.45 51.08 1963 0.002 0.005 2.134 23.057 68.218 72.993 90.312 59.638 41.916 14.853 3.383 0.007 - 10.45 51.08 1964 0.005 0.047 0.441 24.078 82.903 107.512 92.188 68.985 37.716 10.099 0.700 0.041 - 10.45 51.08 1965 0.146 0.008 1.873 23.562 65.421 83.871 77.557 79.750 42.934 20.892 1.483 0.013 - 10.45 51.08 1966 0.028 3.577 8.154 34.821 91.950 93.397 73.099 73.844 45.116 21.531 0.361 0.008 - 10.45 51.08 1967 0.023 1.916 13.842 29.277 88.968 82.967 118.951 70.218 39.960 23.953 3.452 0.006 - 10.45 51.08 1968 0.004 0.083 7.624 46.718 70.094 96.376 86.240 41.889 38.980 16.974 2.467 0.002 - 10.45 51.08 1969 0.005 0.006 0.009 15.152 77.174 94.666 107.376 60.525 52.217 23.127 5.371 0.001 - 10.45 51.08 1970 0.001 0.004 0.713 12.526 64.117 105.320 98.523 68.795 57.379 13.439 4.040 0.122 - 10.45 51.08 1971 0.002 0.039 1.528 30.694 81.514 75.008 92.116 29.693 22.018 15.386 3.959 0.002 - 10.45 51.08 1972 0.003 0.002 6.678 27.827 65.747 93.465 83.408 66.454 39.643 18.599 3.829 0.001 - 10.45 51.08 1973 0.000 0.001 2.650 12.164 77.351 91.950 61.576 22.438 40.854 17.779 2.916 0.000 - 10.45 51.08 1974 0.022 0.732 11.361 44.486 63.240 76.953 76.812 74.337 50.590 9.289 0.001 0.010 - 10.45 51.08 1975 0.000 0.011 1.744 23.161 71.676 74.707 101.817 70.423 49.253 14.380 2.780 0.000 - 10.45 51.08 1976 0.001 0.005 0.905 28.566 85.597 92.107 24.910 29.444 13.169 18.758 3.313 0.000 - 10.45 51.08 1977 0.000 0.104 9.443 25.550 75.738 59.819 79.547 50.157 37.299 18.163 2.463 0.000 - 10.45 51.08 1978 0.000 0.113 5.614 28.005 58.681 79.812 79.382 67.353 33.142 19.006 2.203 0.001 - 10.45 51.08 1979 0.004 0.000 0.376 13.539 65.763 86.998 69.324 71.793 44.733 20.957 1.697 0.006 - 10.45 51.08 1980 0.012 0.005 1.005 14.613 70.748 82.066 65.175 75.865 45.382 14.227 0.409 0.045 - 10.45 51.08 1981 0.078 0.003 13.397 40.776 70.804 78.442 74.429 67.025 45.596 17.356 0.202 0.000 - 10.45 51.08 1982 0.000 0.000 0.892 27.769 76.489 77.676 79.502 37.578 8.599 12.028 6.667 0.000 - 10.45 51.08 1983 0.000 0.026 4.917 31.846 55.766 90.822 91.884 66.016 31.665 16.209 1.247 0.000 - 10.45 51.08 1984 0.000 0.000 0.219 17.610 42.765 71.491 77.177 68.664 32.765 16.991 4.457 0.000 - 10.45 51.08 1985 0.001 0.002 0.402 31.119 73.036 70.468 94.966 72.874 41.058 2.990 1.622 0.006 - 10.45 51.08 1986 0.010 0.000 1.267 11.962 74.430 88.931 88.720 67.285 37.460 22.709 5.903 0.000 - 10.45 51.08 1987 0.000 0.000 0.493 33.032 59.415 59.605 88.546 62.392 41.278 20.212 2.480 0.000 - 10.45 51.08 1988 0.000 0.000 0.719 27.795 84.601 64.780 92.113 79.305 22.541 10.315 2.889 0.000 - 10.45 51.08 1989 0.002 0.082 11.451 27.835 95.779 89.535 43.240 33.558 25.201 21.176 1.535 0.000 - 10.45 51.08 1990 0.000 2.848 21.965 37.460 93.038 67.981 85.947 34.865 32.021 19.579 0.000 0.000 - 10.45 51.08 1991 0.000 0.001 10.734 39.715 54.473 75.687 39.466 73.068 25.439 12.540 1.250 0.000 - 10.45 51.08 1992 0.000 0.097 4.847 28.625 86.902 68.776 82.677 48.849 43.335 11.683 0.692 0.000 - 10.45 51.08 1993 0.003 0.110 8.817 48.160 72.535 78.728 77.462 72.775 33.088 14.985 0.394 0.000 - 10.45 51.08 1994 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1995 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1996 0.031 0.006 0.664 29.252 39.709 76.065 63.119 53.492 18.394 9.616 1.972 0.037 - 10.45 51.08 1997 0.007 1.293 12.511 32.085 61.571 55.078 45.948 70.336 43.281 10.642 1.295 0.133 - 10.45 51.08 1998 0.340 2.575 10.647 32.568 71.486 72.028 60.589 50.206 26.839 8.065 0.470 0.139 - 10.45 51.08 1999 0.082 0.452 5.911 24.312 55.799 55.322 61.110 50.458 40.310 10.622 1.479 0.027 - 10.45 51.08 2000 0.018 0.896 7.043 35.119 74.485 71.939 45.414 65.638 30.376 15.439 1.476 0.033 - 10.45 51.08 2001 0.022 0.486 3.990 24.147 84.586 62.012 90.012 69.653 25.172 21.043 1.725 0.009 - 10.45 51.08 2002 0.202 3.407 13.362 34.363 64.202 85.300 71.184 66.115 42.300 9.564 0.049 0.008 - 10.45 51.08 2003 0.014 0.018 7.559 40.552 76.737 116.301 75.153 31.445 49.300 12.105 1.138 0.010 - 10.45 51.08 2004 0.007 0.843 13.610 50.661 64.538 86.281 85.996 43.931 14.769 23.192 0.027 0.006 - 10.45 51.08 2005 0.010 0.006 7.713 45.478 83.370 74.856 60.277 65.739 45.778 26.202 3.696 0.004 - 10.45 51.08 2006 0.001 0.007 2.003 33.328 88.233 108.397 77.902 54.657 51.334 21.559 3.862 0.008 - 10.45 51.08 2007 0.005 0.167 7.666 69.046 79.958 97.398 84.715 78.234 40.794 18.725 1.155 0.002 - 10.45 51.08 2008 0.082 2.654 10.568 32.094 98.552 95.330 87.703 40.815 20.777 17.877 0.745 0.001 - 10.45 51.08 2009 0.000 0.001 1.267 55.786 81.335 73.274 95.079 56.989 35.216 12.213 1.009 0.001 - 10.45 51.08 2010 0.000 0.001 8.505 52.959 50.774 102.491 99.196 59.307 41.217 20.665 2.108 0.000 - 10.45 51.08 2011 0.001 0.278 14.252 67.776 80.286 87.691 80.912 57.432 36.890 12.753 0.491 0.000 - 10.45 51.08 2012 0.000 0.008 18.568 35.777 81.825 72.481 84.592 60.609 21.075 19.143 1.609 0.000 diff --git a/rLPJGUESS/inst/extdata/outputsForTests/run_distinterval/outDirectory/mevap.out b/rLPJGUESS/inst/extdata/outputsForTests/run_distinterval/outDirectory/mevap.out deleted file mode 100644 index 3ea80b0..0000000 --- a/rLPJGUESS/inst/extdata/outputsForTests/run_distinterval/outDirectory/mevap.out +++ /dev/null @@ -1,63 +0,0 @@ - Lon Lat Year Jan Feb Mar Apr May Jun Jul Aug Sep Oct Nov Dec - 10.45 51.08 1951 5.989 12.670 21.466 15.845 1.956 10.186 5.782 6.923 3.260 1.025 3.875 6.210 - 10.45 51.08 1952 4.381 3.348 26.976 24.879 6.852 3.788 0.450 0.342 3.799 3.003 5.581 3.940 - 10.45 51.08 1953 0.148 5.258 21.976 4.952 0.541 2.806 6.945 2.964 0.407 0.252 2.729 2.196 - 10.45 51.08 1954 4.290 9.927 20.143 21.539 5.933 0.853 5.903 7.677 4.204 3.332 2.429 5.446 - 10.45 51.08 1955 0.731 6.070 9.912 25.552 4.900 3.440 8.777 11.474 5.335 2.290 3.205 5.826 - 10.45 51.08 1956 6.469 0.000 22.104 32.922 42.023 60.526 76.902 44.126 21.993 14.755 7.183 4.045 - 10.45 51.08 1957 6.467 11.564 18.689 16.522 22.319 35.966 39.713 29.812 16.443 11.997 5.432 5.106 - 10.45 51.08 1958 7.416 9.483 8.968 16.724 3.882 4.638 4.631 1.602 0.539 1.075 1.911 5.847 - 10.45 51.08 1959 7.222 9.125 9.556 1.829 0.000 0.085 0.011 0.000 0.000 0.016 4.023 4.314 - 10.45 51.08 1960 4.580 10.857 15.549 9.763 7.552 3.863 0.185 1.539 3.063 3.442 3.191 1.583 - 10.45 51.08 1961 1.346 14.586 13.413 15.795 15.510 17.338 1.414 2.359 0.836 0.040 1.224 3.580 - 10.45 51.08 1962 7.139 11.359 8.894 23.578 6.811 1.331 2.199 0.433 0.791 0.131 0.078 1.140 - 10.45 51.08 1963 0.000 0.000 18.629 22.352 3.678 0.685 1.608 1.724 0.759 0.665 2.355 4.410 - 10.45 51.08 1964 3.364 11.732 14.302 20.659 2.869 0.000 0.000 0.000 0.000 0.000 1.334 1.814 - 10.45 51.08 1965 4.350 0.000 13.335 17.843 8.505 0.000 0.000 0.000 0.000 0.000 0.161 4.531 - 10.45 51.08 1966 4.172 8.791 14.344 12.101 0.068 0.000 0.000 0.000 0.000 0.000 6.420 5.432 - 10.45 51.08 1967 6.288 10.396 16.982 12.177 2.227 0.000 0.000 0.000 0.000 0.000 1.564 3.702 - 10.45 51.08 1968 4.354 11.291 23.580 6.744 0.000 0.000 0.000 0.000 0.000 0.000 3.668 2.713 - 10.45 51.08 1969 4.805 2.916 0.000 26.858 6.240 0.000 0.000 0.000 0.000 0.000 0.213 1.255 - 10.45 51.08 1970 0.000 2.479 13.645 30.650 6.193 0.000 0.000 0.000 0.000 0.000 0.000 4.584 - 10.45 51.08 1971 3.371 9.052 13.778 11.162 2.375 0.000 0.000 0.000 0.000 0.000 1.824 5.298 - 10.45 51.08 1972 3.626 7.724 24.897 11.995 1.114 0.000 0.000 0.000 0.000 0.000 2.100 5.165 - 10.45 51.08 1973 5.217 9.682 22.336 16.463 5.434 0.000 0.000 0.000 0.000 0.000 3.597 5.512 - 10.45 51.08 1974 7.010 9.840 18.434 5.732 0.099 0.000 0.000 0.000 0.000 0.000 9.042 6.706 - 10.45 51.08 1975 8.039 11.109 20.528 25.324 2.679 0.000 0.000 0.000 0.000 0.000 1.105 1.870 - 10.45 51.08 1976 6.269 10.088 14.800 10.908 1.266 0.000 0.000 0.000 0.000 0.000 0.870 2.582 - 10.45 51.08 1977 3.573 9.303 18.269 14.515 1.334 0.000 0.000 0.000 0.000 0.000 6.137 5.729 - 10.45 51.08 1978 6.135 5.499 17.610 10.856 1.827 0.000 0.000 0.000 0.000 0.000 3.003 3.851 - 10.45 51.08 1979 0.000 0.000 17.946 28.538 10.330 0.000 0.000 0.000 0.000 0.000 3.132 5.647 - 10.45 51.08 1980 5.173 11.274 12.016 18.111 10.757 0.000 0.000 0.000 0.000 0.000 2.069 3.064 - 10.45 51.08 1981 2.075 8.628 21.400 4.467 0.000 0.000 0.000 0.000 0.000 0.000 10.089 1.953 - 10.45 51.08 1982 5.971 11.363 17.175 10.592 4.154 0.000 0.000 0.000 0.000 0.000 0.115 2.050 - 10.45 51.08 1983 3.752 5.698 13.261 27.762 0.790 0.000 0.000 0.000 0.000 0.000 0.048 0.527 - 10.45 51.08 1984 2.415 8.598 17.319 31.900 7.379 0.000 0.000 0.000 0.000 0.000 3.015 5.827 - 10.45 51.08 1985 2.474 10.294 15.265 14.587 1.585 0.000 0.000 0.000 0.000 0.000 0.029 2.222 - 10.45 51.08 1986 6.130 3.710 21.760 29.228 4.841 0.000 0.000 0.000 0.000 0.000 0.929 4.487 - 10.45 51.08 1987 1.809 4.311 7.258 20.966 0.952 0.000 0.000 0.000 0.000 0.000 1.808 5.621 - 10.45 51.08 1988 7.867 8.281 11.037 25.768 1.118 0.000 0.000 0.000 0.000 0.000 0.234 4.353 - 10.45 51.08 1989 8.224 9.381 21.706 7.294 1.258 0.000 0.000 0.000 0.000 0.000 5.917 5.978 - 10.45 51.08 1990 7.504 13.439 15.152 4.450 0.000 0.000 0.000 0.000 0.000 0.044 2.074 3.420 - 10.45 51.08 1991 5.266 7.001 13.382 4.324 0.577 0.000 0.000 0.000 0.000 0.000 0.323 1.228 - 10.45 51.08 1992 3.959 7.484 18.502 22.429 1.502 0.000 0.000 0.000 0.000 0.000 4.860 6.041 - 10.45 51.08 1993 7.222 3.565 18.066 8.864 0.000 0.000 0.000 0.000 0.000 0.000 5.452 5.990 - 10.45 51.08 1994 7.843 9.814 28.089 36.236 48.726 46.225 64.566 42.104 33.266 14.436 8.012 6.607 - 10.45 51.08 1995 7.214 13.218 16.768 20.025 30.258 34.468 45.335 28.060 19.411 12.143 4.543 3.526 - 10.45 51.08 1996 4.696 10.795 15.422 13.055 3.538 2.397 3.383 2.931 2.308 1.433 1.411 4.863 - 10.45 51.08 1997 5.865 13.827 16.584 10.654 1.611 0.085 2.484 1.660 0.319 0.303 2.926 3.389 - 10.45 51.08 1998 6.274 9.015 10.953 4.049 1.607 0.625 0.695 0.144 1.381 2.893 5.693 5.238 - 10.45 51.08 1999 6.792 9.534 18.545 16.743 6.589 13.612 20.447 6.810 2.756 1.012 5.148 5.686 - 10.45 51.08 2000 6.923 14.570 23.238 18.187 2.620 0.317 1.193 1.822 3.347 2.723 4.785 3.646 - 10.45 51.08 2001 4.043 8.531 14.841 20.498 2.791 0.281 0.720 0.091 0.099 0.139 4.614 4.974 - 10.45 51.08 2002 7.196 10.340 14.102 7.778 0.000 0.000 0.000 0.000 0.000 6.774 10.241 4.035 - 10.45 51.08 2003 7.093 10.617 21.932 8.388 0.004 0.000 0.000 0.000 0.000 0.000 2.373 4.047 - 10.45 51.08 2004 5.491 9.504 11.902 3.903 0.000 0.000 0.000 0.000 0.000 0.005 2.240 3.547 - 10.45 51.08 2005 5.717 9.239 16.525 10.174 0.000 0.000 0.000 0.000 0.000 0.000 0.679 1.688 - 10.45 51.08 2006 2.748 5.053 11.322 17.245 0.965 0.000 0.000 0.000 0.000 0.000 1.175 2.242 - 10.45 51.08 2007 5.115 9.848 19.783 9.050 0.000 0.000 0.000 0.000 0.000 0.000 5.436 5.528 - 10.45 51.08 2008 7.625 9.810 14.773 14.814 0.145 0.000 0.000 0.000 0.000 0.000 4.303 5.103 - 10.45 51.08 2009 5.603 9.128 20.409 11.111 0.000 0.000 0.000 0.000 0.000 0.000 7.205 5.463 - 10.45 51.08 2010 0.000 2.906 21.170 6.586 0.000 0.000 0.000 0.000 0.000 0.000 6.331 0.000 - 10.45 51.08 2011 4.877 10.495 17.897 3.382 0.000 0.000 0.000 0.000 0.000 0.007 0.953 1.939 - 10.45 51.08 2012 6.584 9.415 14.427 2.884 0.000 0.000 0.000 0.000 0.000 0.000 0.848 4.392 diff --git a/rLPJGUESS/inst/extdata/outputsForTests/run_distinterval/outDirectory/mgpp.out b/rLPJGUESS/inst/extdata/outputsForTests/run_distinterval/outDirectory/mgpp.out deleted file mode 100644 index 576e85a..0000000 --- a/rLPJGUESS/inst/extdata/outputsForTests/run_distinterval/outDirectory/mgpp.out +++ /dev/null @@ -1,63 +0,0 @@ - Lon Lat Year Jan Feb Mar Apr May Jun Jul Aug Sep Oct Nov Dec - 10.45 51.08 1951 0.000 0.000 0.005 0.072 0.192 0.225 0.218 0.176 0.133 0.091 0.022 0.000 - 10.45 51.08 1952 0.000 0.000 0.002 0.099 0.220 0.230 0.198 0.152 0.112 0.069 0.012 0.000 - 10.45 51.08 1953 0.000 0.000 0.021 0.162 0.213 0.189 0.206 0.188 0.140 0.081 0.007 0.000 - 10.45 51.08 1954 0.000 0.000 0.005 0.056 0.209 0.213 0.178 0.170 0.121 0.081 0.025 0.000 - 10.45 51.08 1955 0.000 0.000 0.003 0.056 0.208 0.206 0.172 0.150 0.125 0.078 0.016 0.000 - 10.45 51.08 1956 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1957 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1958 0.000 0.004 0.007 0.065 0.162 0.168 0.185 0.157 0.093 0.032 0.004 0.001 - 10.45 51.08 1959 0.001 0.003 0.036 0.117 0.181 0.178 0.073 0.128 0.114 0.053 0.002 0.001 - 10.45 51.08 1960 0.002 0.002 0.012 0.065 0.167 0.217 0.180 0.144 0.097 0.049 0.015 0.001 - 10.45 51.08 1961 0.001 0.008 0.030 0.100 0.160 0.217 0.188 0.170 0.130 0.072 0.003 0.001 - 10.45 51.08 1962 0.003 0.002 0.004 0.056 0.163 0.234 0.211 0.202 0.140 0.069 0.011 0.001 - 10.45 51.08 1963 0.000 0.000 0.010 0.068 0.213 0.240 0.248 0.195 0.145 0.065 0.025 0.001 - 10.45 51.08 1964 0.000 0.002 0.004 0.073 0.248 0.279 0.241 0.196 0.120 0.043 0.005 0.002 - 10.45 51.08 1965 0.002 0.000 0.009 0.062 0.196 0.244 0.224 0.229 0.150 0.075 0.008 0.001 - 10.45 51.08 1966 0.001 0.010 0.019 0.103 0.260 0.250 0.222 0.208 0.142 0.080 0.003 0.001 - 10.45 51.08 1967 0.001 0.006 0.031 0.070 0.238 0.236 0.273 0.194 0.134 0.089 0.015 0.001 - 10.45 51.08 1968 0.001 0.001 0.020 0.112 0.211 0.252 0.229 0.124 0.131 0.072 0.011 0.000 - 10.45 51.08 1969 0.001 0.000 0.001 0.039 0.216 0.256 0.243 0.176 0.156 0.085 0.026 0.000 - 10.45 51.08 1970 0.000 0.000 0.002 0.029 0.187 0.260 0.248 0.199 0.162 0.060 0.023 0.002 - 10.45 51.08 1971 0.000 0.001 0.003 0.073 0.208 0.222 0.227 0.076 0.074 0.056 0.018 0.001 - 10.45 51.08 1972 0.000 0.000 0.014 0.069 0.198 0.264 0.216 0.197 0.129 0.065 0.018 0.000 - 10.45 51.08 1973 0.000 0.000 0.006 0.025 0.208 0.244 0.171 0.055 0.125 0.068 0.013 0.000 - 10.45 51.08 1974 0.000 0.002 0.028 0.116 0.202 0.236 0.225 0.192 0.152 0.041 0.000 0.000 - 10.45 51.08 1975 0.000 0.000 0.004 0.053 0.208 0.224 0.245 0.175 0.143 0.056 0.012 0.000 - 10.45 51.08 1976 0.000 0.000 0.001 0.061 0.230 0.238 0.057 0.092 0.057 0.072 0.017 0.000 - 10.45 51.08 1977 0.000 0.000 0.025 0.064 0.234 0.188 0.224 0.164 0.124 0.077 0.017 0.000 - 10.45 51.08 1978 0.000 0.000 0.012 0.065 0.180 0.229 0.227 0.194 0.124 0.076 0.008 0.000 - 10.45 51.08 1979 0.000 0.000 0.001 0.033 0.173 0.233 0.212 0.202 0.143 0.075 0.012 0.000 - 10.45 51.08 1980 0.000 0.000 0.002 0.035 0.190 0.243 0.198 0.201 0.147 0.061 0.001 0.000 - 10.45 51.08 1981 0.000 0.000 0.034 0.116 0.211 0.222 0.207 0.191 0.148 0.072 0.002 0.000 - 10.45 51.08 1982 0.000 0.000 0.001 0.059 0.196 0.208 0.202 0.088 0.025 0.061 0.034 0.000 - 10.45 51.08 1983 0.000 0.000 0.011 0.087 0.198 0.247 0.225 0.164 0.109 0.062 0.006 0.000 - 10.45 51.08 1984 0.000 0.000 0.000 0.039 0.145 0.223 0.221 0.191 0.118 0.082 0.020 0.000 - 10.45 51.08 1985 0.000 0.000 0.001 0.072 0.205 0.224 0.251 0.208 0.130 0.013 0.009 0.000 - 10.45 51.08 1986 0.000 0.000 0.001 0.029 0.214 0.244 0.235 0.188 0.141 0.092 0.033 0.000 - 10.45 51.08 1987 0.000 0.000 0.001 0.074 0.203 0.211 0.242 0.192 0.140 0.084 0.019 0.000 - 10.45 51.08 1988 0.000 0.000 0.002 0.061 0.238 0.198 0.246 0.200 0.080 0.048 0.016 0.000 - 10.45 51.08 1989 0.000 0.000 0.025 0.086 0.276 0.261 0.119 0.100 0.085 0.092 0.013 0.000 - 10.45 51.08 1990 0.000 0.008 0.066 0.125 0.283 0.213 0.239 0.093 0.125 0.078 0.000 0.000 - 10.45 51.08 1991 0.000 0.000 0.027 0.116 0.190 0.243 0.098 0.190 0.074 0.051 0.006 0.000 - 10.45 51.08 1992 0.000 0.000 0.011 0.069 0.244 0.199 0.215 0.115 0.150 0.057 0.003 0.000 - 10.45 51.08 1993 0.000 0.000 0.020 0.126 0.222 0.231 0.227 0.206 0.126 0.066 0.002 0.000 - 10.45 51.08 1994 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1995 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1996 0.000 0.001 0.002 0.083 0.119 0.189 0.175 0.133 0.050 0.027 0.006 0.000 - 10.45 51.08 1997 0.000 0.005 0.036 0.092 0.175 0.161 0.133 0.158 0.115 0.032 0.005 0.001 - 10.45 51.08 1998 0.003 0.009 0.028 0.098 0.204 0.193 0.169 0.137 0.092 0.036 0.002 0.001 - 10.45 51.08 1999 0.003 0.002 0.017 0.088 0.224 0.223 0.208 0.184 0.147 0.055 0.011 0.002 - 10.45 51.08 2000 0.002 0.006 0.023 0.113 0.256 0.236 0.185 0.214 0.130 0.079 0.014 0.003 - 10.45 51.08 2001 0.002 0.004 0.014 0.077 0.275 0.230 0.267 0.199 0.117 0.095 0.013 0.001 - 10.45 51.08 2002 0.003 0.014 0.044 0.111 0.224 0.258 0.217 0.197 0.148 0.051 0.005 0.001 - 10.45 51.08 2003 0.002 0.001 0.025 0.114 0.244 0.310 0.215 0.077 0.166 0.049 0.010 0.001 - 10.45 51.08 2004 0.001 0.003 0.036 0.155 0.226 0.263 0.256 0.118 0.051 0.090 0.003 0.001 - 10.45 51.08 2005 0.002 0.001 0.022 0.133 0.236 0.231 0.180 0.203 0.152 0.105 0.022 0.001 - 10.45 51.08 2006 0.000 0.001 0.006 0.094 0.268 0.287 0.192 0.191 0.141 0.096 0.024 0.002 - 10.45 51.08 2007 0.001 0.002 0.024 0.182 0.255 0.272 0.247 0.227 0.149 0.072 0.010 0.001 - 10.45 51.08 2008 0.001 0.008 0.029 0.095 0.279 0.266 0.239 0.117 0.081 0.080 0.006 0.000 - 10.45 51.08 2009 0.000 0.000 0.003 0.161 0.255 0.233 0.252 0.140 0.121 0.057 0.010 0.000 - 10.45 51.08 2010 0.000 0.000 0.023 0.141 0.182 0.273 0.248 0.190 0.144 0.076 0.012 0.000 - 10.45 51.08 2011 0.000 0.001 0.031 0.196 0.242 0.254 0.232 0.169 0.116 0.057 0.004 0.000 - 10.45 51.08 2012 0.000 0.000 0.044 0.100 0.231 0.232 0.241 0.166 0.078 0.071 0.009 0.000 diff --git a/rLPJGUESS/inst/extdata/outputsForTests/run_distinterval/outDirectory/mintercep.out b/rLPJGUESS/inst/extdata/outputsForTests/run_distinterval/outDirectory/mintercep.out deleted file mode 100644 index 56f6174..0000000 --- a/rLPJGUESS/inst/extdata/outputsForTests/run_distinterval/outDirectory/mintercep.out +++ /dev/null @@ -1,63 +0,0 @@ - Lon Lat Year Jan Feb Mar Apr May Jun Jul Aug Sep Oct Nov Dec - 10.45 51.08 1951 0.000 0.000 0.089 0.361 1.685 9.823 2.120 3.993 2.256 1.049 1.108 0.000 - 10.45 51.08 1952 0.000 0.000 0.172 1.231 3.932 1.977 0.970 2.353 6.615 3.528 2.487 0.000 - 10.45 51.08 1953 0.000 0.000 0.029 0.634 2.654 5.184 2.685 2.234 1.057 1.637 0.000 0.000 - 10.45 51.08 1954 0.000 0.000 0.027 0.624 1.140 2.318 5.687 3.784 2.215 2.431 0.705 0.000 - 10.45 51.08 1955 0.000 0.000 0.014 0.455 1.746 2.885 5.525 2.738 2.228 1.461 0.118 0.000 - 10.45 51.08 1956 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1957 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1958 0.074 0.465 0.728 0.658 2.757 3.001 2.340 2.563 1.691 1.570 0.868 0.094 - 10.45 51.08 1959 0.127 0.038 0.382 1.575 2.052 1.808 0.537 2.856 0.014 1.380 0.653 0.068 - 10.45 51.08 1960 0.197 0.108 0.257 0.982 3.068 1.337 2.144 3.328 2.430 3.162 1.034 0.133 - 10.45 51.08 1961 0.131 0.250 0.656 5.085 6.658 4.982 2.792 2.676 1.386 0.850 0.137 0.158 - 10.45 51.08 1962 0.216 0.230 0.352 0.928 3.770 1.170 5.164 2.381 2.392 0.575 0.344 0.141 - 10.45 51.08 1963 0.171 0.123 0.518 1.080 2.497 8.541 2.991 9.983 3.345 2.423 3.152 0.060 - 10.45 51.08 1964 0.069 0.235 0.292 2.235 6.089 4.131 4.354 5.287 2.538 2.277 0.285 0.092 - 10.45 51.08 1965 0.223 0.234 0.245 1.980 2.485 9.510 6.193 4.295 4.285 0.808 1.595 0.184 - 10.45 51.08 1966 0.142 0.306 0.825 3.219 5.269 9.246 9.863 7.980 1.885 4.313 0.654 0.178 - 10.45 51.08 1967 0.113 0.194 1.119 1.039 4.878 9.441 4.496 6.673 6.353 3.250 0.731 0.120 - 10.45 51.08 1968 0.102 0.186 0.221 4.452 3.708 6.414 3.970 5.822 5.845 3.823 0.976 0.068 - 10.45 51.08 1969 0.059 0.126 0.139 1.433 6.987 9.955 0.945 7.992 3.763 1.446 1.758 0.043 - 10.45 51.08 1970 0.035 0.097 0.071 0.707 5.722 4.627 3.770 11.573 1.763 5.377 2.711 0.232 - 10.45 51.08 1971 0.013 0.039 0.079 1.708 3.394 6.525 1.114 3.456 2.446 2.455 1.475 0.021 - 10.45 51.08 1972 0.009 0.002 0.164 0.972 4.932 6.255 9.229 7.947 1.944 1.662 1.020 0.002 - 10.45 51.08 1973 0.013 0.024 0.012 0.372 2.589 3.587 4.568 2.511 4.587 3.817 1.013 0.016 - 10.45 51.08 1974 0.009 0.186 0.347 0.747 4.053 6.350 4.700 3.997 1.895 4.563 0.007 0.032 - 10.45 51.08 1975 0.002 0.009 0.191 0.512 3.261 5.945 2.123 3.274 2.494 2.570 0.282 0.002 - 10.45 51.08 1976 0.012 0.001 0.015 0.519 2.611 4.614 2.090 2.539 2.965 1.719 1.353 0.003 - 10.45 51.08 1977 0.001 0.010 0.787 0.660 1.825 6.411 4.358 7.816 2.117 2.281 1.943 0.002 - 10.45 51.08 1978 0.000 0.000 0.119 0.356 3.749 1.620 3.663 4.268 4.302 1.822 0.000 0.012 - 10.45 51.08 1979 0.025 0.000 0.060 0.516 2.022 4.634 4.147 1.533 3.395 0.494 2.084 0.010 - 10.45 51.08 1980 0.027 0.000 0.020 0.889 1.500 4.155 3.692 1.202 3.228 1.984 0.342 0.047 - 10.45 51.08 1981 0.175 0.002 0.549 1.916 5.474 3.589 2.097 5.847 2.589 2.682 0.000 0.000 - 10.45 51.08 1982 0.000 0.000 0.009 0.430 1.574 2.803 3.827 1.108 0.701 3.036 0.798 0.000 - 10.45 51.08 1983 0.000 0.005 0.252 2.684 5.993 1.494 1.689 3.388 3.072 0.253 0.117 0.000 - 10.45 51.08 1984 0.000 0.000 0.000 0.164 6.660 2.983 3.969 4.583 3.588 3.647 0.158 0.000 - 10.45 51.08 1985 0.001 0.000 0.017 0.446 2.295 4.128 2.879 2.945 1.295 0.210 0.598 0.015 - 10.45 51.08 1986 0.021 0.000 0.032 0.501 5.179 2.967 2.888 3.749 3.459 1.614 0.352 0.000 - 10.45 51.08 1987 0.000 0.000 0.007 0.184 4.060 8.799 4.694 4.456 5.670 1.313 1.866 0.000 - 10.45 51.08 1988 0.000 0.001 0.051 0.351 1.452 4.697 4.154 1.213 1.659 1.001 1.281 0.000 - 10.45 51.08 1989 0.001 0.003 0.218 1.799 1.869 3.324 2.806 1.435 2.541 1.701 1.773 0.000 - 10.45 51.08 1990 0.000 0.262 0.666 2.239 0.764 5.572 1.265 2.330 2.988 0.527 0.000 0.000 - 10.45 51.08 1991 0.000 0.000 0.311 0.566 1.879 3.861 1.207 5.032 1.070 0.913 0.221 0.000 - 10.45 51.08 1992 0.000 0.003 0.605 0.313 1.285 4.451 4.807 1.796 2.079 2.733 0.195 0.000 - 10.45 51.08 1993 0.010 0.025 0.114 0.409 4.889 3.556 5.761 2.325 2.821 2.456 0.098 0.000 - 10.45 51.08 1994 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1995 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1996 0.005 0.065 0.077 0.602 2.681 2.089 2.653 3.338 0.978 1.633 1.327 0.035 - 10.45 51.08 1997 0.038 0.265 0.901 0.869 1.718 1.012 5.019 1.621 0.447 1.819 0.168 0.148 - 10.45 51.08 1998 0.128 0.132 0.731 1.925 1.958 2.750 3.552 1.341 3.597 3.194 0.552 0.054 - 10.45 51.08 1999 0.116 0.217 0.564 1.065 3.679 4.463 4.541 3.055 1.497 0.866 0.693 0.150 - 10.45 51.08 2000 0.167 0.470 1.455 1.718 2.112 3.159 4.741 4.733 4.965 2.413 0.513 0.094 - 10.45 51.08 2001 0.124 0.209 2.056 2.028 3.315 7.682 7.517 1.730 5.387 2.680 1.605 0.165 - 10.45 51.08 2002 0.109 1.377 2.551 2.746 7.800 7.281 8.358 7.638 4.090 3.740 0.276 0.171 - 10.45 51.08 2003 0.131 0.095 0.223 0.728 5.943 8.756 4.233 2.218 4.923 3.240 0.264 0.090 - 10.45 51.08 2004 0.100 0.134 0.543 3.143 10.036 4.602 7.491 3.157 3.586 1.044 0.145 0.048 - 10.45 51.08 2005 0.068 0.143 0.341 2.174 4.484 4.158 7.560 4.784 6.351 1.797 1.103 0.087 - 10.45 51.08 2006 0.041 0.081 0.262 2.609 4.727 6.534 5.121 9.626 0.952 4.251 2.034 0.035 - 10.45 51.08 2007 0.071 0.084 0.571 0.420 9.380 7.688 10.494 7.958 5.480 0.667 1.461 0.043 - 10.45 51.08 2008 0.063 0.147 1.418 3.479 1.610 5.534 5.687 2.915 4.005 5.155 0.070 0.025 - 10.45 51.08 2009 0.006 0.036 0.104 3.713 6.347 5.552 6.928 1.328 4.868 4.620 2.399 0.037 - 10.45 51.08 2010 0.015 0.014 0.382 0.681 8.786 1.128 10.950 11.664 3.623 1.155 0.832 0.021 - 10.45 51.08 2011 0.007 0.026 0.282 1.833 0.617 7.034 6.009 6.797 2.658 3.200 0.000 0.008 - 10.45 51.08 2012 0.004 0.001 0.049 0.674 3.393 10.011 8.480 3.737 2.735 1.822 0.519 0.003 diff --git a/rLPJGUESS/inst/extdata/outputsForTests/run_distinterval/outDirectory/miso.out b/rLPJGUESS/inst/extdata/outputsForTests/run_distinterval/outDirectory/miso.out deleted file mode 100644 index 8edc368..0000000 --- a/rLPJGUESS/inst/extdata/outputsForTests/run_distinterval/outDirectory/miso.out +++ /dev/null @@ -1,63 +0,0 @@ - Lon Lat Year Jan Feb Mar Apr May Jun Jul Aug Sep Oct Nov Dec - 10.45 51.08 1951 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1952 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1953 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1954 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1955 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1956 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1957 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1958 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1959 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1960 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1961 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1962 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1963 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1964 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1965 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1966 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1967 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1968 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1969 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1970 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1971 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1972 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1973 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1974 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1975 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1976 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1977 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1978 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1979 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1980 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1981 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1982 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1983 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1984 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1985 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1986 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1987 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1988 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1989 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1990 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1991 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1992 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1993 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1994 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1995 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1996 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1997 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1998 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1999 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 2000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 2001 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 2002 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 2003 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 2004 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 2005 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 2006 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 2007 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 2008 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 2009 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 2010 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 2011 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 2012 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 diff --git a/rLPJGUESS/inst/extdata/outputsForTests/run_distinterval/outDirectory/mlai.out b/rLPJGUESS/inst/extdata/outputsForTests/run_distinterval/outDirectory/mlai.out deleted file mode 100644 index d5eb27f..0000000 --- a/rLPJGUESS/inst/extdata/outputsForTests/run_distinterval/outDirectory/mlai.out +++ /dev/null @@ -1,63 +0,0 @@ - Lon Lat Year Jan Feb Mar Apr May Jun Jul Aug Sep Oct Nov Dec - 10.45 51.08 1951 0.000 0.000 0.165 0.977 2.984 3.334 3.334 3.334 3.334 3.334 2.121 0.000 - 10.45 51.08 1952 0.000 0.000 0.080 1.651 3.381 3.381 3.381 3.381 3.381 3.381 1.242 0.000 - 10.45 51.08 1953 0.000 0.012 0.310 2.251 3.383 3.383 3.383 3.383 3.383 3.383 0.444 0.000 - 10.45 51.08 1954 0.000 0.000 0.090 0.829 2.713 3.324 3.324 3.324 3.324 3.324 2.652 0.000 - 10.45 51.08 1955 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1956 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1957 0.234 0.250 0.712 1.412 1.499 1.500 1.500 1.500 1.500 1.492 1.241 0.068 - 10.45 51.08 1958 0.121 0.623 1.150 1.661 3.266 3.367 3.367 3.367 3.367 3.367 2.721 0.194 - 10.45 51.08 1959 0.320 0.316 1.344 3.257 3.738 3.502 2.138 3.738 2.872 3.574 1.691 0.197 - 10.45 51.08 1960 0.249 0.227 0.523 1.499 2.832 3.146 3.087 3.146 3.146 3.146 2.393 0.441 - 10.45 51.08 1961 0.261 0.276 0.858 2.300 3.164 3.164 3.164 3.164 3.164 3.059 0.261 0.261 - 10.45 51.08 1962 0.290 0.305 0.358 1.077 3.463 4.039 4.039 4.039 4.039 4.039 2.165 0.290 - 10.45 51.08 1963 0.294 0.294 0.373 1.399 4.098 4.656 4.656 4.656 4.656 4.656 3.493 0.294 - 10.45 51.08 1964 0.286 0.286 0.299 1.347 4.734 5.186 5.186 5.186 5.186 5.186 1.429 0.334 - 10.45 51.08 1965 0.361 0.254 0.308 1.472 4.056 5.420 5.420 5.420 5.420 5.420 2.665 0.255 - 10.45 51.08 1966 0.248 0.563 1.308 2.684 5.532 5.626 5.626 5.626 5.626 5.626 1.229 0.230 - 10.45 51.08 1967 0.199 0.422 1.067 1.960 4.915 5.902 5.902 5.902 5.902 5.902 3.406 0.199 - 10.45 51.08 1968 0.170 0.178 0.404 2.933 5.831 5.859 5.859 5.859 5.859 5.859 2.193 0.170 - 10.45 51.08 1969 0.124 0.124 0.124 0.998 4.700 5.748 5.748 5.748 5.748 5.748 5.373 0.124 - 10.45 51.08 1970 0.087 0.087 0.121 0.716 4.131 5.689 5.689 5.689 5.689 5.689 5.689 0.387 - 10.45 51.08 1971 0.056 0.062 0.184 1.508 4.696 5.600 5.600 5.600 5.600 5.600 3.937 0.056 - 10.45 51.08 1972 0.049 0.038 0.321 1.824 4.377 5.015 5.015 5.015 5.015 5.015 3.024 0.038 - 10.45 51.08 1973 0.032 0.032 0.129 0.739 3.669 5.167 5.167 5.167 5.167 5.167 2.771 0.032 - 10.45 51.08 1974 0.040 0.285 0.748 2.737 4.367 4.625 4.625 4.625 4.625 4.625 0.021 0.046 - 10.45 51.08 1975 0.016 0.026 0.287 0.957 3.999 4.788 4.788 4.788 4.788 4.788 2.084 0.016 - 10.45 51.08 1976 0.013 0.013 0.058 1.435 4.091 4.810 4.810 4.810 4.810 4.810 3.211 0.012 - 10.45 51.08 1977 0.006 0.028 0.843 1.781 3.846 4.208 4.208 4.208 4.208 4.208 1.383 0.006 - 10.45 51.08 1978 0.000 0.007 0.376 1.414 3.609 4.398 4.398 4.398 4.398 4.398 2.053 0.004 - 10.45 51.08 1979 0.048 0.000 0.026 0.712 2.850 4.511 4.511 4.511 4.511 4.511 1.955 0.046 - 10.45 51.08 1980 0.100 0.006 0.062 0.852 2.738 4.552 4.552 4.552 4.552 4.552 1.062 0.165 - 10.45 51.08 1981 0.264 0.011 0.770 3.258 4.455 4.583 4.583 4.583 4.583 4.583 0.100 0.000 - 10.45 51.08 1982 0.000 0.000 0.043 1.102 3.342 4.718 4.718 4.718 4.718 4.718 4.431 0.000 - 10.45 51.08 1983 0.000 0.038 0.414 1.531 4.017 4.195 4.195 4.195 4.195 4.195 1.892 0.000 - 10.45 51.08 1984 0.000 0.000 0.011 0.552 3.019 4.247 4.247 4.247 4.247 4.247 2.831 0.000 - 10.45 51.08 1985 0.009 0.003 0.034 1.509 3.552 4.251 4.251 4.251 4.251 4.251 1.559 0.022 - 10.45 51.08 1986 0.055 0.000 0.048 0.526 3.701 4.275 4.275 4.275 4.275 4.275 3.807 0.000 - 10.45 51.08 1987 0.000 0.000 0.020 1.083 3.946 4.364 4.364 4.364 4.364 4.364 3.200 0.000 - 10.45 51.08 1988 0.000 0.001 0.052 1.005 3.915 4.396 4.396 4.396 4.396 4.396 3.077 0.000 - 10.45 51.08 1989 0.002 0.018 0.474 2.112 3.970 4.185 4.185 4.185 4.185 4.185 1.241 0.000 - 10.45 51.08 1990 0.000 0.234 1.603 3.058 4.092 4.099 4.099 4.099 4.099 2.835 0.000 0.000 - 10.45 51.08 1991 0.000 0.001 0.754 2.531 3.886 4.239 4.239 4.239 4.239 4.239 0.834 0.000 - 10.45 51.08 1992 0.000 0.018 0.373 1.106 3.536 4.019 4.019 4.019 4.019 4.019 0.402 0.000 - 10.45 51.08 1993 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1994 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1995 0.133 0.280 0.485 1.054 1.481 1.493 1.493 1.493 1.493 1.493 0.987 0.059 - 10.45 51.08 1996 0.140 0.089 0.121 1.297 3.419 3.483 3.483 3.483 3.483 3.483 3.061 0.107 - 10.45 51.08 1997 0.146 0.291 1.356 2.274 3.247 2.958 2.972 3.366 3.366 3.366 1.157 0.388 - 10.45 51.08 1998 0.402 0.565 1.611 2.894 3.468 3.468 3.468 3.180 3.468 3.090 1.012 0.240 - 10.45 51.08 1999 0.255 0.305 0.587 1.698 3.111 3.187 3.187 3.187 3.187 3.187 1.084 0.252 - 10.45 51.08 2000 0.285 0.381 0.865 2.105 4.202 4.202 4.202 4.202 4.202 4.202 1.264 0.285 - 10.45 51.08 2001 0.292 0.391 0.929 2.231 4.652 4.930 4.930 4.930 4.930 4.930 1.992 0.292 - 10.45 51.08 2002 0.288 1.317 2.388 3.754 5.442 5.474 5.474 5.474 5.474 3.535 0.273 0.273 - 10.45 51.08 2003 0.247 0.247 0.546 2.240 5.671 5.772 5.772 5.772 5.772 5.772 0.983 0.247 - 10.45 51.08 2004 0.214 0.677 1.586 3.607 5.741 5.741 5.741 5.741 5.741 5.335 0.214 0.214 - 10.45 51.08 2005 0.157 0.157 0.540 2.917 5.528 5.567 5.567 5.567 5.567 5.567 1.821 0.157 - 10.45 51.08 2006 0.120 0.120 0.205 1.964 5.336 5.671 5.671 5.671 5.671 5.671 3.451 0.120 - 10.45 51.08 2007 0.082 0.098 0.552 3.031 5.661 5.665 5.665 5.665 5.665 5.665 1.546 0.082 - 10.45 51.08 2008 0.112 0.498 1.452 2.624 5.622 5.923 5.923 5.923 5.923 5.923 1.093 0.061 - 10.45 51.08 2009 0.044 0.044 0.140 3.048 5.722 5.722 5.722 5.722 5.722 5.722 1.937 0.044 - 10.45 51.08 2010 0.026 0.026 0.491 2.891 5.580 5.663 5.663 5.663 5.663 5.663 1.688 0.026 - 10.45 51.08 2011 0.020 0.182 0.796 4.019 5.711 5.711 5.711 5.711 5.711 5.641 0.179 0.018 - 10.45 51.08 2012 0.002 0.005 0.772 2.806 5.567 5.585 5.585 5.585 5.585 5.585 1.346 0.002 diff --git a/rLPJGUESS/inst/extdata/outputsForTests/run_distinterval/outDirectory/mmon.out b/rLPJGUESS/inst/extdata/outputsForTests/run_distinterval/outDirectory/mmon.out deleted file mode 100644 index 8edc368..0000000 --- a/rLPJGUESS/inst/extdata/outputsForTests/run_distinterval/outDirectory/mmon.out +++ /dev/null @@ -1,63 +0,0 @@ - Lon Lat Year Jan Feb Mar Apr May Jun Jul Aug Sep Oct Nov Dec - 10.45 51.08 1951 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1952 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1953 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1954 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1955 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1956 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1957 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1958 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1959 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1960 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1961 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1962 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1963 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1964 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1965 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1966 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1967 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1968 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1969 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1970 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1971 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1972 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1973 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1974 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1975 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1976 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1977 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1978 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1979 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1980 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1981 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1982 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1983 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1984 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1985 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1986 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1987 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1988 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1989 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1990 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1991 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1992 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1993 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1994 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1995 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1996 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1997 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1998 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1999 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 2000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 2001 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 2002 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 2003 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 2004 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 2005 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 2006 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 2007 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 2008 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 2009 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 2010 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 2011 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 2012 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 diff --git a/rLPJGUESS/inst/extdata/outputsForTests/run_distinterval/outDirectory/mnee.out b/rLPJGUESS/inst/extdata/outputsForTests/run_distinterval/outDirectory/mnee.out deleted file mode 100644 index 14284b6..0000000 --- a/rLPJGUESS/inst/extdata/outputsForTests/run_distinterval/outDirectory/mnee.out +++ /dev/null @@ -1,63 +0,0 @@ - Lon Lat Year Jan Feb Mar Apr May Jun Jul Aug Sep Oct Nov Dec - 10.45 51.08 1951 -0.021 -0.016 -0.014 0.012 0.064 0.088 0.059 0.037 0.016 0.028 -0.011 -0.017 - 10.45 51.08 1952 -0.016 -0.008 -0.019 0.016 0.093 0.077 0.009 -0.011 0.031 0.020 -0.008 -0.008 - 10.45 51.08 1953 -0.009 -0.011 -0.015 0.057 0.062 0.040 0.050 0.036 0.021 -0.000 -0.023 -0.022 - 10.45 51.08 1954 -0.008 -0.004 -0.021 0.009 0.075 0.042 0.048 0.041 0.016 0.015 -0.007 -0.019 - 10.45 51.08 1955 -0.007 -0.009 -0.008 0.009 0.079 0.062 0.026 0.029 0.020 0.014 -0.008 -0.015 - 10.45 51.08 1956 -0.013 0.000 -0.008 -0.029 -0.077 -0.083 -0.091 -0.090 -0.080 -0.055 -0.017 -0.016 - 10.45 51.08 1957 -0.003 -0.015 -0.026 -0.033 -0.047 -0.083 -0.099 -0.076 -0.055 -0.035 -0.022 -0.007 - 10.45 51.08 1958 -0.007 -0.010 -0.000 0.029 0.041 0.034 0.016 -0.027 -0.059 -0.049 -0.024 -0.010 - 10.45 51.08 1959 -0.013 -0.002 -0.012 0.010 0.019 -0.000 -0.116 -0.056 -0.022 -0.031 -0.021 -0.007 - 10.45 51.08 1960 -0.012 -0.005 -0.014 -0.005 0.040 0.024 0.001 -0.027 -0.019 -0.008 -0.018 -0.011 - 10.45 51.08 1961 -0.005 -0.011 -0.019 0.021 0.060 0.071 -0.006 0.007 -0.036 -0.032 -0.028 -0.004 - 10.45 51.08 1962 -0.012 -0.010 -0.001 0.001 0.053 0.062 0.046 0.016 0.013 -0.014 -0.013 -0.004 - 10.45 51.08 1963 -0.001 -0.001 -0.006 0.007 0.066 0.049 0.044 0.032 0.018 0.002 -0.012 -0.006 - 10.45 51.08 1964 -0.003 -0.006 -0.005 0.008 0.089 0.048 0.019 0.001 -0.023 -0.027 -0.023 -0.014 - 10.45 51.08 1965 -0.014 -0.004 -0.006 -0.003 0.064 0.069 0.034 0.043 0.017 -0.012 -0.015 -0.013 - 10.45 51.08 1966 -0.007 -0.011 -0.015 0.025 0.068 0.027 0.067 0.043 0.024 -0.019 -0.014 -0.012 - 10.45 51.08 1967 -0.014 -0.019 -0.014 0.009 0.062 0.062 0.025 -0.012 0.005 -0.016 -0.018 -0.009 - 10.45 51.08 1968 -0.008 -0.015 -0.006 0.011 0.062 0.043 0.010 -0.049 -0.014 -0.009 -0.018 -0.006 - 10.45 51.08 1969 -0.010 -0.008 -0.005 -0.007 0.065 0.084 0.013 -0.040 0.034 -0.003 -0.021 -0.004 - 10.45 51.08 1970 -0.003 -0.004 -0.010 -0.012 0.055 0.040 0.025 0.020 0.022 -0.012 -0.015 -0.013 - 10.45 51.08 1971 -0.007 -0.020 -0.012 -0.004 0.028 0.039 0.016 -0.122 -0.041 -0.029 -0.016 -0.017 - 10.45 51.08 1972 -0.008 -0.012 -0.021 0.000 0.069 0.092 0.021 0.049 0.027 0.007 -0.015 -0.012 - 10.45 51.08 1973 -0.008 -0.016 -0.019 -0.016 0.058 0.041 -0.037 -0.110 -0.021 0.002 -0.011 -0.007 - 10.45 51.08 1974 -0.023 -0.021 -0.006 0.023 0.074 0.079 0.067 0.010 0.007 -0.008 -0.020 -0.020 - 10.45 51.08 1975 -0.031 -0.017 -0.022 0.007 0.068 0.061 0.027 -0.029 -0.006 -0.020 -0.014 -0.013 - 10.45 51.08 1976 -0.020 -0.006 -0.013 -0.002 0.070 0.057 -0.148 -0.054 -0.049 -0.018 -0.013 -0.012 - 10.45 51.08 1977 -0.008 -0.020 -0.018 0.019 0.091 0.038 0.062 0.039 0.026 0.009 -0.016 -0.011 - 10.45 51.08 1978 -0.016 -0.006 -0.020 0.006 0.060 0.042 0.058 0.016 0.016 0.011 -0.016 -0.010 - 10.45 51.08 1979 -0.003 -0.003 -0.016 -0.008 0.052 0.021 0.047 0.031 0.012 -0.003 -0.010 -0.019 - 10.45 51.08 1980 -0.006 -0.017 -0.019 -0.008 0.075 0.056 0.045 0.015 0.013 -0.011 -0.021 -0.011 - 10.45 51.08 1981 -0.009 -0.008 -0.004 0.030 0.085 0.063 0.023 0.038 0.029 0.009 -0.021 -0.007 - 10.45 51.08 1982 -0.006 -0.010 -0.023 -0.002 0.055 0.006 -0.001 -0.087 -0.104 -0.024 -0.011 -0.017 - 10.45 51.08 1983 -0.028 -0.009 -0.018 0.027 0.075 0.077 0.008 -0.013 -0.017 -0.020 -0.022 -0.011 - 10.45 51.08 1984 -0.025 -0.010 -0.013 -0.003 0.049 0.086 0.064 0.037 0.019 0.012 -0.009 -0.012 - 10.45 51.08 1985 -0.003 -0.006 -0.016 0.001 0.054 0.057 0.060 0.033 0.007 -0.062 -0.012 -0.019 - 10.45 51.08 1986 -0.010 -0.003 -0.014 -0.005 0.061 0.089 0.034 0.008 0.044 0.011 -0.002 -0.015 - 10.45 51.08 1987 -0.005 -0.005 -0.006 0.007 0.082 0.089 0.059 0.057 0.017 0.017 -0.010 -0.012 - 10.45 51.08 1988 -0.027 -0.018 -0.016 0.002 0.067 0.032 0.061 0.014 -0.034 -0.031 -0.016 -0.016 - 10.45 51.08 1989 -0.023 -0.018 -0.016 0.015 0.114 0.082 -0.050 -0.057 -0.036 0.003 -0.017 -0.014 - 10.45 51.08 1990 -0.017 -0.025 0.009 0.052 0.110 0.072 0.066 -0.077 0.011 -0.005 -0.029 -0.011 - 10.45 51.08 1991 -0.022 -0.005 -0.020 0.038 0.081 0.084 -0.084 0.026 -0.049 -0.028 -0.021 -0.011 - 10.45 51.08 1992 -0.018 -0.015 -0.019 0.013 0.082 0.023 0.041 -0.059 0.031 -0.003 -0.020 -0.013 - 10.45 51.08 1993 -0.018 -0.005 -0.006 0.037 0.049 0.084 0.082 0.054 0.032 0.006 -0.010 -0.013 - 10.45 51.08 1994 -0.018 -0.009 -0.028 -0.040 -0.096 -0.099 -0.149 -0.135 -0.064 -0.037 -0.028 -0.015 - 10.45 51.08 1995 -0.004 -0.014 -0.014 -0.025 -0.044 -0.050 -0.089 -0.105 -0.049 -0.044 -0.017 -0.001 - 10.45 51.08 1996 -0.000 0.000 -0.003 0.032 0.034 0.036 0.045 -0.013 -0.021 -0.027 -0.025 -0.004 - 10.45 51.08 1997 -0.001 -0.011 -0.007 0.034 0.025 -0.002 -0.013 -0.040 -0.033 -0.040 -0.013 -0.009 - 10.45 51.08 1998 -0.022 -0.009 -0.010 0.018 0.044 0.008 -0.006 -0.045 -0.005 -0.012 -0.015 -0.004 - 10.45 51.08 1999 -0.019 -0.005 -0.011 0.018 0.073 0.068 0.042 0.014 -0.012 -0.021 -0.013 -0.009 - 10.45 51.08 2000 -0.010 -0.013 -0.006 0.036 0.064 0.050 0.032 0.028 0.017 0.007 -0.019 -0.018 - 10.45 51.08 2001 -0.012 -0.017 -0.010 0.024 0.110 0.071 0.079 -0.011 0.003 -0.002 -0.016 -0.009 - 10.45 51.08 2002 -0.007 -0.024 0.004 0.043 0.079 0.076 0.037 0.025 0.014 -0.002 -0.019 -0.009 - 10.45 51.08 2003 -0.011 -0.006 -0.010 0.027 0.042 0.066 -0.004 -0.138 0.019 -0.015 -0.020 -0.014 - 10.45 51.08 2004 -0.016 -0.020 0.001 0.056 0.093 0.068 0.055 -0.087 -0.079 -0.003 -0.030 -0.010 - 10.45 51.08 2005 -0.025 -0.005 -0.003 0.033 0.071 0.028 -0.032 0.022 -0.010 0.005 -0.026 -0.012 - 10.45 51.08 2006 -0.006 -0.007 -0.004 0.017 0.077 0.085 -0.055 0.006 -0.014 -0.014 -0.027 -0.026 - 10.45 51.08 2007 -0.037 -0.022 -0.021 0.059 0.064 0.063 0.059 0.068 0.038 0.008 -0.012 -0.012 - 10.45 51.08 2008 -0.025 -0.019 -0.011 0.033 0.087 0.045 0.023 -0.071 -0.039 0.001 -0.022 -0.011 - 10.45 51.08 2009 -0.005 -0.011 -0.026 0.036 0.088 0.063 0.031 -0.060 -0.021 -0.014 -0.023 -0.013 - 10.45 51.08 2010 -0.003 -0.005 -0.011 0.039 0.060 0.072 0.004 0.043 0.035 0.014 -0.018 -0.003 - 10.45 51.08 2011 -0.016 -0.012 -0.006 0.052 0.057 0.044 0.043 -0.016 -0.029 -0.031 -0.024 -0.021 - 10.45 51.08 2012 -0.026 -0.005 -0.014 0.014 0.040 0.050 0.049 -0.030 -0.051 -0.012 -0.023 -0.013 diff --git a/rLPJGUESS/inst/extdata/outputsForTests/run_distinterval/outDirectory/mnpp.out b/rLPJGUESS/inst/extdata/outputsForTests/run_distinterval/outDirectory/mnpp.out deleted file mode 100644 index ca1874c..0000000 --- a/rLPJGUESS/inst/extdata/outputsForTests/run_distinterval/outDirectory/mnpp.out +++ /dev/null @@ -1,63 +0,0 @@ - Lon Lat Year Jan Feb Mar Apr May Jun Jul Aug Sep Oct Nov Dec - 10.45 51.08 1951 -0.010 -0.009 -0.005 0.039 0.118 0.133 0.120 0.087 0.063 0.050 0.000 -0.011 - 10.45 51.08 1952 -0.008 -0.007 -0.009 0.050 0.135 0.136 0.098 0.064 0.058 0.033 -0.001 -0.007 - 10.45 51.08 1953 -0.006 -0.007 0.002 0.101 0.124 0.103 0.107 0.097 0.071 0.034 -0.009 -0.012 - 10.45 51.08 1954 -0.005 -0.004 -0.009 0.029 0.128 0.119 0.098 0.086 0.056 0.035 0.004 -0.012 - 10.45 51.08 1955 -0.005 -0.005 -0.006 0.028 0.131 0.121 0.087 0.073 0.061 0.038 0.000 -0.010 - 10.45 51.08 1956 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1957 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1958 -0.000 0.001 0.003 0.044 0.104 0.105 0.113 0.090 0.044 0.004 -0.008 -0.000 - 10.45 51.08 1959 -0.001 0.001 0.022 0.074 0.116 0.111 0.037 0.064 0.068 0.022 -0.005 -0.000 - 10.45 51.08 1960 -0.001 -0.000 0.006 0.042 0.110 0.142 0.115 0.086 0.054 0.024 0.002 -0.002 - 10.45 51.08 1961 -0.002 0.002 0.017 0.065 0.107 0.146 0.121 0.109 0.077 0.039 -0.002 0.004 - 10.45 51.08 1962 -0.002 -0.002 -0.000 0.034 0.110 0.155 0.137 0.127 0.087 0.038 0.003 -0.002 - 10.45 51.08 1963 -0.001 -0.001 0.002 0.041 0.141 0.154 0.154 0.117 0.086 0.034 0.007 -0.002 - 10.45 51.08 1964 -0.003 -0.002 -0.001 0.044 0.162 0.175 0.143 0.113 0.060 0.015 -0.005 -0.004 - 10.45 51.08 1965 -0.004 -0.003 0.001 0.037 0.127 0.152 0.135 0.139 0.087 0.037 -0.002 -0.006 - 10.45 51.08 1966 -0.003 0.001 0.007 0.063 0.167 0.151 0.133 0.121 0.078 0.034 -0.005 -0.005 - 10.45 51.08 1967 -0.005 -0.003 0.014 0.042 0.152 0.146 0.159 0.104 0.069 0.038 -0.001 -0.005 - 10.45 51.08 1968 -0.004 -0.004 0.006 0.067 0.134 0.155 0.131 0.050 0.066 0.029 -0.003 -0.004 - 10.45 51.08 1969 -0.005 -0.003 -0.004 0.018 0.135 0.160 0.138 0.088 0.087 0.041 0.003 -0.002 - 10.45 51.08 1970 -0.003 -0.004 -0.005 0.012 0.118 0.158 0.148 0.109 0.090 0.024 0.001 -0.005 - 10.45 51.08 1971 -0.005 -0.005 -0.004 0.042 0.128 0.136 0.127 0.001 0.024 0.017 0.001 -0.008 - 10.45 51.08 1972 -0.003 -0.005 0.002 0.041 0.126 0.168 0.123 0.113 0.073 0.033 0.002 -0.005 - 10.45 51.08 1973 -0.005 -0.005 -0.004 0.011 0.134 0.151 0.087 -0.009 0.060 0.034 -0.000 -0.005 - 10.45 51.08 1974 -0.007 -0.005 0.013 0.075 0.132 0.152 0.139 0.108 0.086 0.018 -0.008 -0.009 - 10.45 51.08 1975 -0.009 -0.005 -0.004 0.030 0.134 0.141 0.145 0.088 0.075 0.024 0.000 -0.006 - 10.45 51.08 1976 -0.007 -0.004 -0.005 0.035 0.148 0.144 -0.014 0.029 0.013 0.032 0.002 -0.005 - 10.45 51.08 1977 -0.005 -0.006 0.010 0.039 0.156 0.113 0.136 0.092 0.068 0.038 0.002 -0.006 - 10.45 51.08 1978 -0.005 -0.004 0.001 0.039 0.116 0.144 0.141 0.113 0.070 0.038 -0.004 -0.006 - 10.45 51.08 1979 -0.003 -0.003 -0.007 0.016 0.109 0.140 0.129 0.119 0.080 0.038 0.000 -0.009 - 10.45 51.08 1980 -0.003 -0.007 -0.006 0.017 0.125 0.153 0.119 0.113 0.081 0.026 -0.009 -0.006 - 10.45 51.08 1981 -0.004 -0.005 0.014 0.072 0.132 0.133 0.119 0.107 0.082 0.034 -0.009 -0.004 - 10.45 51.08 1982 -0.005 -0.005 -0.009 0.033 0.122 0.117 0.106 0.013 -0.030 0.020 0.009 -0.008 - 10.45 51.08 1983 -0.009 -0.003 0.000 0.052 0.125 0.153 0.123 0.079 0.049 0.023 -0.007 -0.006 - 10.45 51.08 1984 -0.006 -0.005 -0.006 0.019 0.090 0.140 0.133 0.105 0.062 0.039 0.003 -0.006 - 10.45 51.08 1985 -0.003 -0.004 -0.007 0.041 0.128 0.141 0.151 0.120 0.068 -0.017 -0.000 -0.010 - 10.45 51.08 1986 -0.006 -0.002 -0.007 0.011 0.129 0.150 0.136 0.100 0.083 0.046 0.010 -0.008 - 10.45 51.08 1987 -0.003 -0.004 -0.005 0.041 0.132 0.130 0.142 0.109 0.071 0.043 0.002 -0.008 - 10.45 51.08 1988 -0.010 -0.007 -0.007 0.033 0.148 0.115 0.143 0.105 0.024 0.011 0.001 -0.009 - 10.45 51.08 1989 -0.008 -0.007 0.007 0.051 0.178 0.163 0.042 0.026 0.027 0.044 -0.001 -0.009 - 10.45 51.08 1990 -0.008 -0.005 0.036 0.079 0.183 0.128 0.140 0.015 0.067 0.035 -0.011 -0.006 - 10.45 51.08 1991 -0.008 -0.004 0.007 0.072 0.122 0.152 0.015 0.097 0.012 0.012 -0.006 -0.007 - 10.45 51.08 1992 -0.007 -0.007 -0.001 0.039 0.152 0.110 0.115 0.031 0.082 0.025 -0.009 -0.007 - 10.45 51.08 1993 -0.010 -0.004 0.006 0.075 0.133 0.138 0.133 0.116 0.068 0.030 -0.005 -0.009 - 10.45 51.08 1994 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1995 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1996 -0.000 0.000 0.001 0.057 0.074 0.119 0.110 0.071 0.017 0.003 -0.008 -0.000 - 10.45 51.08 1997 -0.000 0.002 0.022 0.063 0.115 0.104 0.079 0.088 0.063 0.007 0.000 -0.001 - 10.45 51.08 1998 -0.001 0.003 0.015 0.062 0.134 0.122 0.102 0.077 0.049 0.013 -0.004 -0.001 - 10.45 51.08 1999 -0.002 -0.000 0.008 0.059 0.154 0.151 0.133 0.117 0.090 0.030 0.003 -0.001 - 10.45 51.08 2000 -0.002 -0.001 0.012 0.074 0.169 0.152 0.116 0.131 0.076 0.043 0.002 -0.003 - 10.45 51.08 2001 -0.003 -0.002 0.005 0.049 0.183 0.149 0.166 0.111 0.065 0.048 0.001 -0.004 - 10.45 51.08 2002 -0.003 0.002 0.024 0.071 0.141 0.160 0.126 0.106 0.082 0.022 -0.005 -0.004 - 10.45 51.08 2003 -0.004 -0.002 0.010 0.072 0.153 0.191 0.116 -0.006 0.093 0.020 -0.003 -0.005 - 10.45 51.08 2004 -0.004 -0.005 0.018 0.100 0.145 0.165 0.154 0.033 -0.003 0.044 -0.007 -0.005 - 10.45 51.08 2005 -0.006 -0.003 0.009 0.085 0.150 0.138 0.088 0.115 0.076 0.054 0.005 -0.005 - 10.45 51.08 2006 -0.003 -0.003 -0.001 0.058 0.172 0.180 0.083 0.105 0.064 0.044 0.001 -0.008 - 10.45 51.08 2007 -0.009 -0.006 0.008 0.118 0.159 0.163 0.142 0.129 0.083 0.033 -0.002 -0.006 - 10.45 51.08 2008 -0.009 -0.002 0.012 0.059 0.178 0.159 0.133 0.033 0.025 0.037 -0.007 -0.006 - 10.45 51.08 2009 -0.004 -0.005 -0.007 0.099 0.160 0.142 0.142 0.049 0.052 0.020 -0.008 -0.006 - 10.45 51.08 2010 -0.003 -0.004 0.007 0.090 0.113 0.168 0.131 0.101 0.078 0.036 -0.003 -0.003 - 10.45 51.08 2011 -0.007 -0.005 0.014 0.124 0.149 0.150 0.133 0.079 0.045 0.015 -0.006 -0.009 - 10.45 51.08 2012 -0.008 -0.004 0.021 0.060 0.137 0.138 0.135 0.070 0.017 0.028 -0.005 -0.008 diff --git a/rLPJGUESS/inst/extdata/outputsForTests/run_distinterval/outDirectory/mpet.out b/rLPJGUESS/inst/extdata/outputsForTests/run_distinterval/outDirectory/mpet.out deleted file mode 100644 index dd715c1..0000000 --- a/rLPJGUESS/inst/extdata/outputsForTests/run_distinterval/outDirectory/mpet.out +++ /dev/null @@ -1,63 +0,0 @@ - Lon Lat Year Jan Feb Mar Apr May Jun Jul Aug Sep Oct Nov Dec - 10.45 51.08 1951 0.993 1.908 6.989 45.241 70.135 93.855 98.950 79.923 53.450 25.205 5.793 0.877 - 10.45 51.08 1952 0.937 1.580 5.019 49.306 79.531 95.256 108.777 81.883 36.745 19.523 4.540 0.699 - 10.45 51.08 1953 0.841 1.967 18.917 61.995 91.554 78.611 94.415 82.872 52.857 24.346 2.656 0.894 - 10.45 51.08 1954 1.017 1.824 8.436 35.188 86.592 94.407 70.297 74.161 47.254 24.477 7.107 1.037 - 10.45 51.08 1955 1.481 2.412 7.714 38.549 79.691 87.023 78.990 66.597 48.665 23.554 5.141 1.275 - 10.45 51.08 1956 8.836 8.478 36.315 56.142 110.656 91.912 110.760 90.971 63.492 32.581 10.636 7.047 - 10.45 51.08 1957 4.266 8.914 29.966 59.126 82.587 122.030 99.922 80.556 44.660 22.183 6.864 3.153 - 10.45 51.08 1958 0.949 3.735 6.606 28.651 73.591 77.425 91.160 80.683 47.930 17.745 3.429 0.898 - 10.45 51.08 1959 0.440 1.404 14.920 47.242 72.733 89.081 88.775 62.702 53.169 22.074 1.848 0.259 - 10.45 51.08 1960 1.728 2.866 10.415 38.400 74.376 105.330 87.069 70.218 41.513 19.857 6.346 1.426 - 10.45 51.08 1961 2.085 8.231 22.175 45.154 66.368 102.197 87.752 77.452 61.427 26.517 3.590 2.016 - 10.45 51.08 1962 2.313 3.289 7.825 37.135 60.949 98.761 83.938 81.916 53.839 23.327 4.799 1.255 - 10.45 51.08 1963 0.448 0.682 6.510 31.919 75.302 86.718 99.189 74.088 48.248 18.668 7.361 0.442 - 10.45 51.08 1964 0.163 1.081 2.108 33.597 88.991 119.123 107.085 77.379 52.541 17.297 1.499 0.416 - 10.45 51.08 1965 0.572 0.391 4.391 29.512 70.504 93.414 83.749 84.044 47.219 21.700 3.126 0.411 - 10.45 51.08 1966 0.364 4.072 8.978 38.525 97.220 108.833 82.962 81.824 47.001 25.844 1.505 0.356 - 10.45 51.08 1967 0.453 2.227 14.962 31.655 97.395 92.408 127.879 81.728 46.313 27.203 4.353 0.271 - 10.45 51.08 1968 0.226 0.603 13.037 54.329 73.802 102.791 109.951 80.100 45.676 20.798 3.755 0.115 - 10.45 51.08 1969 0.225 0.341 0.446 22.996 84.342 104.621 120.427 89.198 55.981 24.572 7.133 0.063 - 10.45 51.08 1970 0.079 0.255 1.288 14.576 70.958 124.324 106.485 80.369 59.142 18.817 6.750 0.435 - 10.45 51.08 1971 0.118 0.211 1.896 37.320 84.909 81.533 135.065 105.684 56.675 28.443 5.449 0.116 - 10.45 51.08 1972 0.027 0.148 9.140 28.900 70.950 99.720 92.637 74.401 41.586 20.261 4.872 0.061 - 10.45 51.08 1973 0.039 0.108 4.130 14.270 80.846 98.616 99.515 99.539 54.499 21.596 3.961 0.041 - 10.45 51.08 1974 0.087 0.954 11.708 45.233 67.293 83.304 81.512 78.334 52.485 13.853 0.095 0.095 - 10.45 51.08 1975 0.060 0.073 2.530 26.541 75.140 80.652 103.941 102.669 51.747 16.950 3.076 0.016 - 10.45 51.08 1976 0.031 0.053 1.289 30.961 89.906 110.102 121.494 87.872 39.202 20.477 4.674 0.013 - 10.45 51.08 1977 0.011 0.170 10.235 26.211 77.564 66.237 83.905 57.973 39.416 20.444 4.500 0.008 - 10.45 51.08 1978 0.004 0.156 6.083 28.949 62.430 81.457 83.045 71.621 37.444 20.828 2.212 0.018 - 10.45 51.08 1979 0.037 0.000 0.441 17.703 73.508 91.632 73.471 73.326 49.014 21.452 3.782 0.026 - 10.45 51.08 1980 0.051 0.013 1.098 20.581 76.097 86.251 68.866 82.630 49.168 20.351 0.751 0.154 - 10.45 51.08 1981 0.263 0.010 14.002 42.693 76.278 82.032 76.526 72.872 48.185 20.038 0.323 0.000 - 10.45 51.08 1982 0.000 0.000 1.269 32.800 79.980 99.213 103.096 88.168 61.690 19.840 7.476 0.000 - 10.45 51.08 1983 0.000 0.049 5.239 34.904 61.760 92.316 112.481 81.535 48.936 21.073 3.870 0.000 - 10.45 51.08 1984 0.000 0.000 0.223 26.342 49.683 74.474 81.146 73.247 36.353 20.638 4.614 0.000 - 10.45 51.08 1985 0.003 0.005 0.440 33.172 75.330 74.604 102.888 75.820 48.026 21.289 2.529 0.032 - 10.45 51.08 1986 0.043 0.000 1.459 13.796 80.368 91.899 91.630 78.789 40.919 24.322 6.324 0.000 - 10.45 51.08 1987 0.000 0.000 0.555 37.345 63.475 68.403 93.240 66.847 46.948 21.525 4.346 0.000 - 10.45 51.08 1988 0.000 0.001 0.792 32.044 86.790 77.494 96.267 87.756 44.406 19.872 4.169 0.000 - 10.45 51.08 1989 0.007 0.106 12.796 29.634 100.533 92.858 90.690 81.569 45.744 22.876 3.448 0.000 - 10.45 51.08 1990 0.000 3.380 22.631 39.699 97.681 75.934 94.460 87.934 35.008 21.209 0.000 0.000 - 10.45 51.08 1991 0.000 0.004 11.311 40.281 56.352 80.356 111.544 79.840 57.261 23.621 1.838 0.000 - 10.45 51.08 1992 0.000 0.119 5.564 30.781 93.881 81.077 95.171 79.486 45.414 14.416 0.887 0.000 - 10.45 51.08 1993 0.022 0.157 9.004 48.677 86.901 82.285 83.223 75.100 35.909 17.441 0.560 0.000 - 10.45 51.08 1994 8.962 14.288 37.724 62.084 101.295 120.394 147.484 104.580 60.121 31.116 13.892 7.732 - 10.45 51.08 1995 4.153 9.858 23.177 47.871 84.153 81.279 122.842 103.999 41.242 26.458 5.962 2.461 - 10.45 51.08 1996 0.542 1.440 3.178 40.949 48.435 87.705 74.147 64.356 22.876 13.537 4.205 0.536 - 10.45 51.08 1997 0.515 2.905 15.790 37.209 69.372 82.030 70.458 78.704 48.062 14.692 2.229 0.711 - 10.45 51.08 1998 1.303 4.053 13.609 38.119 79.722 81.349 69.988 72.064 33.451 13.029 2.028 0.723 - 10.45 51.08 1999 3.855 5.753 18.600 46.863 94.340 94.991 104.973 85.568 67.157 20.807 5.914 2.635 - 10.45 51.08 2000 1.794 4.957 14.481 49.491 94.572 100.476 63.929 87.183 44.327 22.839 5.066 1.825 - 10.45 51.08 2001 0.602 1.640 6.441 27.720 89.315 70.878 99.104 76.432 31.130 24.170 3.833 0.393 - 10.45 51.08 2002 0.864 5.125 15.913 37.110 72.002 92.657 79.542 73.752 46.391 14.923 1.216 0.326 - 10.45 51.08 2003 0.442 0.493 11.705 47.674 82.679 125.057 100.372 112.567 54.223 15.345 2.380 0.314 - 10.45 51.08 2004 0.275 1.203 14.324 53.804 74.574 90.883 93.487 95.609 60.041 24.821 0.775 0.187 - 10.45 51.08 2005 0.352 0.304 9.521 49.169 87.854 108.051 101.998 72.193 62.524 27.999 5.321 0.203 - 10.45 51.08 2006 0.088 0.315 2.878 36.921 92.960 115.214 146.523 64.283 69.813 25.810 6.114 0.316 - 10.45 51.08 2007 0.314 0.834 12.605 72.669 99.492 107.155 100.885 89.058 46.274 19.393 2.996 0.131 - 10.45 51.08 2008 0.358 2.901 11.986 35.574 101.042 113.941 108.671 84.551 45.011 23.032 1.292 0.067 - 10.45 51.08 2009 0.039 0.114 1.545 63.710 87.682 78.826 102.007 99.514 54.468 16.833 3.567 0.082 - 10.45 51.08 2010 0.024 0.115 9.867 53.710 59.561 116.461 128.026 70.970 44.840 21.819 3.083 0.028 - 10.45 51.08 2011 0.038 0.420 14.653 69.908 108.014 103.381 89.448 77.580 60.844 27.681 1.134 0.036 - 10.45 51.08 2012 0.017 0.042 19.911 36.451 100.777 83.235 97.116 98.301 55.742 24.306 2.210 0.013 diff --git a/rLPJGUESS/inst/extdata/outputsForTests/run_distinterval/outDirectory/mra.out b/rLPJGUESS/inst/extdata/outputsForTests/run_distinterval/outDirectory/mra.out deleted file mode 100644 index 5852550..0000000 --- a/rLPJGUESS/inst/extdata/outputsForTests/run_distinterval/outDirectory/mra.out +++ /dev/null @@ -1,63 +0,0 @@ - Lon Lat Year Jan Feb Mar Apr May Jun Jul Aug Sep Oct Nov Dec - 10.45 51.08 1951 0.010 0.009 0.011 0.034 0.074 0.092 0.098 0.089 0.070 0.041 0.022 0.011 - 10.45 51.08 1952 0.008 0.007 0.011 0.048 0.084 0.094 0.100 0.088 0.054 0.036 0.013 0.007 - 10.45 51.08 1953 0.006 0.008 0.019 0.061 0.089 0.087 0.099 0.092 0.069 0.047 0.016 0.012 - 10.45 51.08 1954 0.005 0.004 0.014 0.027 0.081 0.094 0.080 0.084 0.065 0.046 0.021 0.012 - 10.45 51.08 1955 0.005 0.005 0.009 0.028 0.077 0.085 0.085 0.077 0.063 0.039 0.016 0.010 - 10.45 51.08 1956 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1957 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1958 0.001 0.003 0.004 0.021 0.059 0.063 0.072 0.067 0.049 0.028 0.012 0.001 - 10.45 51.08 1959 0.002 0.002 0.014 0.043 0.065 0.067 0.036 0.064 0.046 0.031 0.008 0.001 - 10.45 51.08 1960 0.002 0.002 0.006 0.023 0.056 0.075 0.065 0.058 0.044 0.026 0.013 0.003 - 10.45 51.08 1961 0.002 0.006 0.013 0.035 0.052 0.072 0.067 0.062 0.054 0.033 0.005 -0.003 - 10.45 51.08 1962 0.005 0.003 0.004 0.022 0.054 0.079 0.074 0.075 0.053 0.031 0.008 0.002 - 10.45 51.08 1963 0.001 0.001 0.008 0.026 0.072 0.086 0.094 0.078 0.060 0.031 0.017 0.003 - 10.45 51.08 1964 0.003 0.004 0.005 0.030 0.086 0.105 0.097 0.083 0.060 0.028 0.010 0.006 - 10.45 51.08 1965 0.006 0.003 0.008 0.025 0.069 0.091 0.089 0.090 0.063 0.038 0.010 0.007 - 10.45 51.08 1966 0.004 0.010 0.012 0.039 0.092 0.098 0.089 0.087 0.063 0.046 0.008 0.007 - 10.45 51.08 1967 0.007 0.008 0.017 0.028 0.086 0.090 0.114 0.090 0.065 0.052 0.016 0.006 - 10.45 51.08 1968 0.005 0.006 0.014 0.045 0.077 0.098 0.097 0.074 0.064 0.042 0.014 0.004 - 10.45 51.08 1969 0.006 0.004 0.005 0.021 0.081 0.097 0.106 0.088 0.069 0.045 0.023 0.002 - 10.45 51.08 1970 0.003 0.004 0.006 0.017 0.069 0.102 0.101 0.089 0.072 0.037 0.022 0.007 - 10.45 51.08 1971 0.005 0.006 0.007 0.031 0.080 0.086 0.100 0.076 0.051 0.038 0.016 0.009 - 10.45 51.08 1972 0.003 0.005 0.012 0.028 0.071 0.096 0.093 0.085 0.055 0.031 0.016 0.006 - 10.45 51.08 1973 0.005 0.005 0.009 0.014 0.074 0.093 0.083 0.064 0.065 0.034 0.013 0.005 - 10.45 51.08 1974 0.007 0.007 0.015 0.042 0.070 0.084 0.087 0.084 0.066 0.024 0.009 0.009 - 10.45 51.08 1975 0.009 0.005 0.008 0.023 0.074 0.083 0.100 0.087 0.068 0.032 0.012 0.006 - 10.45 51.08 1976 0.007 0.004 0.006 0.026 0.082 0.094 0.071 0.064 0.045 0.040 0.015 0.005 - 10.45 51.08 1977 0.005 0.006 0.016 0.025 0.078 0.075 0.089 0.072 0.055 0.039 0.015 0.006 - 10.45 51.08 1978 0.005 0.004 0.011 0.026 0.064 0.085 0.086 0.081 0.054 0.037 0.012 0.006 - 10.45 51.08 1979 0.003 0.003 0.008 0.018 0.064 0.093 0.084 0.083 0.063 0.037 0.011 0.009 - 10.45 51.08 1980 0.003 0.007 0.008 0.018 0.065 0.091 0.079 0.088 0.066 0.034 0.010 0.006 - 10.45 51.08 1981 0.004 0.005 0.020 0.044 0.079 0.089 0.087 0.084 0.066 0.038 0.011 0.004 - 10.45 51.08 1982 0.005 0.005 0.010 0.026 0.074 0.091 0.096 0.075 0.055 0.041 0.025 0.008 - 10.45 51.08 1983 0.009 0.003 0.011 0.035 0.072 0.094 0.102 0.085 0.060 0.039 0.013 0.006 - 10.45 51.08 1984 0.006 0.005 0.007 0.020 0.056 0.083 0.088 0.086 0.056 0.043 0.017 0.006 - 10.45 51.08 1985 0.003 0.004 0.008 0.031 0.077 0.083 0.100 0.088 0.062 0.030 0.009 0.010 - 10.45 51.08 1986 0.006 0.002 0.008 0.017 0.084 0.094 0.099 0.088 0.058 0.046 0.023 0.008 - 10.45 51.08 1987 0.003 0.004 0.006 0.033 0.071 0.080 0.100 0.083 0.069 0.042 0.017 0.008 - 10.45 51.08 1988 0.010 0.007 0.008 0.028 0.090 0.083 0.103 0.095 0.055 0.037 0.015 0.009 - 10.45 51.08 1989 0.008 0.008 0.018 0.036 0.098 0.098 0.076 0.074 0.058 0.047 0.014 0.009 - 10.45 51.08 1990 0.008 0.013 0.030 0.045 0.100 0.086 0.099 0.078 0.059 0.043 0.011 0.006 - 10.45 51.08 1991 0.008 0.004 0.020 0.043 0.067 0.091 0.083 0.094 0.061 0.039 0.012 0.007 - 10.45 51.08 1992 0.007 0.008 0.012 0.031 0.092 0.089 0.100 0.084 0.067 0.032 0.012 0.007 - 10.45 51.08 1993 0.010 0.004 0.014 0.051 0.090 0.093 0.094 0.090 0.058 0.036 0.007 0.009 - 10.45 51.08 1994 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1995 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1996 0.000 0.000 0.001 0.026 0.045 0.071 0.065 0.062 0.033 0.025 0.014 0.000 - 10.45 51.08 1997 0.001 0.003 0.014 0.030 0.060 0.058 0.054 0.069 0.052 0.025 0.005 0.002 - 10.45 51.08 1998 0.004 0.005 0.013 0.036 0.070 0.071 0.067 0.060 0.043 0.023 0.006 0.002 - 10.45 51.08 1999 0.004 0.003 0.008 0.029 0.070 0.072 0.074 0.067 0.057 0.025 0.008 0.003 - 10.45 51.08 2000 0.004 0.006 0.012 0.039 0.087 0.084 0.069 0.083 0.054 0.036 0.012 0.006 - 10.45 51.08 2001 0.005 0.006 0.009 0.029 0.092 0.081 0.102 0.089 0.052 0.047 0.012 0.005 - 10.45 51.08 2002 0.006 0.012 0.020 0.040 0.082 0.099 0.091 0.091 0.066 0.029 0.010 0.005 - 10.45 51.08 2003 0.006 0.003 0.015 0.042 0.091 0.120 0.098 0.082 0.073 0.029 0.013 0.007 - 10.45 51.08 2004 0.005 0.008 0.018 0.054 0.081 0.098 0.102 0.086 0.054 0.046 0.010 0.006 - 10.45 51.08 2005 0.007 0.004 0.013 0.048 0.086 0.093 0.092 0.088 0.076 0.051 0.017 0.006 - 10.45 51.08 2006 0.003 0.004 0.008 0.037 0.095 0.107 0.109 0.086 0.077 0.053 0.023 0.010 - 10.45 51.08 2007 0.011 0.008 0.016 0.064 0.096 0.109 0.105 0.098 0.066 0.039 0.012 0.007 - 10.45 51.08 2008 0.010 0.009 0.016 0.037 0.101 0.107 0.106 0.083 0.055 0.043 0.013 0.006 - 10.45 51.08 2009 0.004 0.005 0.010 0.062 0.095 0.091 0.109 0.092 0.069 0.036 0.018 0.006 - 10.45 51.08 2010 0.003 0.005 0.016 0.051 0.069 0.106 0.118 0.089 0.066 0.040 0.016 0.003 - 10.45 51.08 2011 0.007 0.006 0.017 0.072 0.093 0.104 0.099 0.090 0.071 0.042 0.011 0.010 - 10.45 51.08 2012 0.008 0.004 0.024 0.041 0.094 0.094 0.106 0.096 0.061 0.043 0.014 0.008 diff --git a/rLPJGUESS/inst/extdata/outputsForTests/run_distinterval/outDirectory/mrh.out b/rLPJGUESS/inst/extdata/outputsForTests/run_distinterval/outDirectory/mrh.out deleted file mode 100644 index eede77b..0000000 --- a/rLPJGUESS/inst/extdata/outputsForTests/run_distinterval/outDirectory/mrh.out +++ /dev/null @@ -1,63 +0,0 @@ - Lon Lat Year Jan Feb Mar Apr May Jun Jul Aug Sep Oct Nov Dec - 10.45 51.08 1951 0.011 0.008 0.008 0.026 0.054 0.045 0.062 0.051 0.047 0.022 0.012 0.007 - 10.45 51.08 1952 0.008 0.001 0.010 0.034 0.043 0.059 0.089 0.076 0.027 0.013 0.007 0.001 - 10.45 51.08 1953 0.002 0.003 0.017 0.044 0.062 0.063 0.057 0.060 0.050 0.035 0.014 0.009 - 10.45 51.08 1954 0.002 0.000 0.012 0.020 0.053 0.077 0.050 0.045 0.040 0.020 0.012 0.007 - 10.45 51.08 1955 0.002 0.004 0.003 0.020 0.052 0.060 0.061 0.044 0.042 0.024 0.008 0.005 - 10.45 51.08 1956 0.013 0.000 0.008 0.029 0.077 0.083 0.091 0.090 0.080 0.055 0.017 0.016 - 10.45 51.08 1957 0.003 0.015 0.026 0.033 0.047 0.083 0.099 0.076 0.055 0.035 0.022 0.007 - 10.45 51.08 1958 0.007 0.011 0.003 0.015 0.062 0.070 0.097 0.117 0.103 0.053 0.016 0.010 - 10.45 51.08 1959 0.012 0.003 0.034 0.064 0.097 0.112 0.153 0.120 0.090 0.053 0.016 0.006 - 10.45 51.08 1960 0.011 0.004 0.020 0.047 0.070 0.119 0.114 0.113 0.072 0.032 0.020 0.009 - 10.45 51.08 1961 0.004 0.013 0.036 0.044 0.047 0.074 0.127 0.102 0.113 0.072 0.026 0.008 - 10.45 51.08 1962 0.009 0.008 0.001 0.033 0.057 0.093 0.091 0.111 0.075 0.052 0.015 0.002 - 10.45 51.08 1963 0.000 0.000 0.008 0.034 0.075 0.105 0.110 0.085 0.068 0.032 0.019 0.004 - 10.45 51.08 1964 0.000 0.004 0.004 0.036 0.073 0.127 0.125 0.112 0.083 0.043 0.018 0.010 - 10.45 51.08 1965 0.009 0.001 0.006 0.039 0.063 0.083 0.101 0.096 0.070 0.049 0.013 0.007 - 10.45 51.08 1966 0.004 0.011 0.022 0.038 0.100 0.124 0.067 0.078 0.054 0.054 0.009 0.007 - 10.45 51.08 1967 0.008 0.016 0.028 0.033 0.090 0.084 0.134 0.116 0.064 0.053 0.018 0.004 - 10.45 51.08 1968 0.003 0.011 0.012 0.056 0.072 0.112 0.121 0.099 0.080 0.038 0.015 0.002 - 10.45 51.08 1969 0.005 0.005 0.001 0.025 0.069 0.076 0.125 0.128 0.053 0.044 0.025 0.001 - 10.45 51.08 1970 0.000 0.000 0.005 0.024 0.063 0.117 0.122 0.089 0.068 0.036 0.016 0.008 - 10.45 51.08 1971 0.003 0.015 0.008 0.046 0.099 0.096 0.111 0.122 0.065 0.046 0.017 0.009 - 10.45 51.08 1972 0.004 0.007 0.023 0.040 0.058 0.076 0.102 0.064 0.046 0.027 0.017 0.007 - 10.45 51.08 1973 0.004 0.011 0.015 0.027 0.076 0.110 0.125 0.101 0.081 0.032 0.011 0.002 - 10.45 51.08 1974 0.016 0.017 0.018 0.052 0.058 0.073 0.071 0.099 0.079 0.025 0.012 0.011 - 10.45 51.08 1975 0.023 0.012 0.018 0.023 0.066 0.080 0.118 0.117 0.082 0.044 0.014 0.007 - 10.45 51.08 1976 0.013 0.002 0.008 0.038 0.078 0.088 0.134 0.082 0.062 0.050 0.015 0.007 - 10.45 51.08 1977 0.003 0.014 0.027 0.021 0.065 0.075 0.074 0.054 0.043 0.029 0.018 0.005 - 10.45 51.08 1978 0.011 0.003 0.021 0.033 0.056 0.102 0.083 0.097 0.054 0.028 0.013 0.004 - 10.45 51.08 1979 0.000 0.000 0.009 0.024 0.057 0.119 0.082 0.088 0.068 0.041 0.010 0.010 - 10.45 51.08 1980 0.002 0.010 0.013 0.025 0.050 0.097 0.074 0.097 0.068 0.038 0.012 0.005 - 10.45 51.08 1981 0.005 0.004 0.018 0.042 0.047 0.070 0.096 0.069 0.053 0.025 0.011 0.003 - 10.45 51.08 1982 0.001 0.005 0.015 0.035 0.068 0.111 0.107 0.100 0.075 0.044 0.021 0.009 - 10.45 51.08 1983 0.019 0.006 0.018 0.025 0.050 0.076 0.115 0.093 0.066 0.043 0.015 0.005 - 10.45 51.08 1984 0.019 0.005 0.007 0.022 0.040 0.054 0.069 0.068 0.043 0.027 0.012 0.006 - 10.45 51.08 1985 0.001 0.002 0.009 0.040 0.074 0.083 0.091 0.087 0.061 0.045 0.012 0.009 - 10.45 51.08 1986 0.005 0.001 0.007 0.017 0.068 0.061 0.101 0.092 0.039 0.035 0.012 0.007 - 10.45 51.08 1987 0.002 0.001 0.001 0.033 0.050 0.042 0.083 0.052 0.054 0.026 0.012 0.004 - 10.45 51.08 1988 0.017 0.011 0.009 0.031 0.081 0.083 0.082 0.092 0.058 0.042 0.016 0.006 - 10.45 51.08 1989 0.015 0.010 0.023 0.035 0.064 0.081 0.092 0.083 0.062 0.041 0.016 0.005 - 10.45 51.08 1990 0.009 0.019 0.028 0.027 0.072 0.056 0.074 0.092 0.056 0.040 0.017 0.004 - 10.45 51.08 1991 0.014 0.001 0.028 0.034 0.041 0.068 0.099 0.071 0.062 0.040 0.015 0.004 - 10.45 51.08 1992 0.011 0.008 0.018 0.025 0.070 0.088 0.074 0.090 0.051 0.028 0.010 0.006 - 10.45 51.08 1993 0.009 0.001 0.012 0.038 0.084 0.054 0.051 0.062 0.036 0.024 0.005 0.004 - 10.45 51.08 1994 0.018 0.009 0.028 0.040 0.096 0.099 0.149 0.135 0.064 0.037 0.028 0.015 - 10.45 51.08 1995 0.004 0.014 0.014 0.025 0.044 0.050 0.089 0.105 0.049 0.044 0.017 0.001 - 10.45 51.08 1996 0.000 0.000 0.004 0.025 0.040 0.082 0.065 0.084 0.038 0.030 0.017 0.004 - 10.45 51.08 1997 0.001 0.014 0.029 0.028 0.090 0.106 0.092 0.128 0.096 0.047 0.013 0.007 - 10.45 51.08 1998 0.021 0.012 0.025 0.044 0.091 0.114 0.108 0.122 0.054 0.025 0.011 0.003 - 10.45 51.08 1999 0.017 0.005 0.020 0.041 0.081 0.082 0.091 0.103 0.103 0.051 0.016 0.008 - 10.45 51.08 2000 0.008 0.012 0.018 0.038 0.106 0.101 0.084 0.103 0.059 0.036 0.021 0.015 - 10.45 51.08 2001 0.009 0.014 0.014 0.025 0.073 0.078 0.087 0.122 0.062 0.050 0.016 0.005 - 10.45 51.08 2002 0.003 0.027 0.020 0.028 0.063 0.083 0.089 0.081 0.067 0.024 0.014 0.005 - 10.45 51.08 2003 0.006 0.004 0.020 0.045 0.111 0.125 0.120 0.132 0.074 0.035 0.016 0.009 - 10.45 51.08 2004 0.011 0.015 0.018 0.045 0.052 0.096 0.099 0.120 0.076 0.047 0.023 0.006 - 10.45 51.08 2005 0.019 0.001 0.012 0.052 0.079 0.110 0.120 0.093 0.087 0.049 0.030 0.007 - 10.45 51.08 2006 0.003 0.004 0.003 0.040 0.096 0.095 0.138 0.099 0.078 0.058 0.028 0.017 - 10.45 51.08 2007 0.028 0.016 0.029 0.058 0.095 0.100 0.083 0.061 0.045 0.025 0.010 0.006 - 10.45 51.08 2008 0.017 0.017 0.023 0.026 0.091 0.114 0.110 0.104 0.064 0.037 0.014 0.005 - 10.45 51.08 2009 0.001 0.006 0.019 0.063 0.072 0.080 0.112 0.109 0.073 0.034 0.015 0.007 - 10.45 51.08 2010 0.000 0.001 0.018 0.051 0.053 0.096 0.127 0.058 0.043 0.022 0.014 0.000 - 10.45 51.08 2011 0.009 0.007 0.019 0.072 0.092 0.106 0.090 0.095 0.074 0.046 0.018 0.011 - 10.45 51.08 2012 0.018 0.001 0.035 0.045 0.096 0.088 0.086 0.100 0.068 0.040 0.018 0.005 diff --git a/rLPJGUESS/inst/extdata/outputsForTests/run_distinterval/outDirectory/mrunoff.out b/rLPJGUESS/inst/extdata/outputsForTests/run_distinterval/outDirectory/mrunoff.out deleted file mode 100644 index 425e492..0000000 --- a/rLPJGUESS/inst/extdata/outputsForTests/run_distinterval/outDirectory/mrunoff.out +++ /dev/null @@ -1,63 +0,0 @@ - Lon Lat Year Jan Feb Mar Apr May Jun Jul Aug Sep Oct Nov Dec - 10.45 51.08 1951 0.000 2.852 0.000 0.000 0.000 60.402 0.000 0.000 0.000 0.000 16.371 0.000 - 10.45 51.08 1952 0.715 3.278 34.557 24.241 2.391 0.000 0.000 0.000 69.314 12.952 29.869 22.961 - 10.45 51.08 1953 30.992 49.532 0.432 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1954 9.148 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 10.427 - 10.45 51.08 1955 17.978 12.534 38.392 14.316 0.000 0.000 5.728 16.074 0.000 0.000 0.000 20.452 - 10.45 51.08 1956 19.854 0.000 50.993 35.946 11.150 53.713 104.319 29.863 10.667 21.139 21.393 12.255 - 10.45 51.08 1957 24.151 28.518 21.342 14.204 23.620 28.699 45.850 20.347 44.538 19.698 27.192 22.264 - 10.45 51.08 1958 38.663 20.667 72.446 18.077 11.010 21.889 27.769 0.000 0.000 6.434 19.626 31.417 - 10.45 51.08 1959 18.646 4.489 4.028 0.381 0.069 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1960 4.392 1.022 16.059 4.279 10.045 0.000 0.000 0.000 0.000 43.506 16.174 36.048 - 10.45 51.08 1961 45.833 33.708 10.073 44.594 46.812 47.914 0.000 0.000 0.000 0.000 0.000 4.568 - 10.45 51.08 1962 0.000 7.419 21.662 11.629 1.691 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1963 0.000 0.000 5.093 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.912 0.000 - 10.45 51.08 1964 0.000 0.000 0.000 0.000 24.699 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1965 0.000 0.000 6.391 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 8.766 - 10.45 51.08 1966 0.355 15.973 0.000 0.000 0.000 0.000 9.144 9.436 0.000 21.841 12.171 11.246 - 10.45 51.08 1967 0.516 0.663 22.687 5.634 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1968 11.127 4.697 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1969 0.000 0.000 1.151 21.779 21.962 3.535 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1970 0.000 25.133 5.657 1.164 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1971 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1972 0.000 0.000 2.415 0.000 0.000 0.000 13.999 31.556 0.000 0.000 0.000 0.000 - 10.45 51.08 1973 0.000 0.000 0.954 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 2.369 - 10.45 51.08 1974 0.000 0.966 0.000 0.000 0.000 0.000 0.000 0.000 0.000 9.262 0.000 10.639 - 10.45 51.08 1975 0.000 0.000 0.000 9.323 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1976 1.205 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1977 0.000 0.000 5.230 0.000 0.000 0.000 0.000 42.816 0.222 0.000 33.953 7.277 - 10.45 51.08 1978 0.000 0.000 14.296 2.445 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1979 0.000 0.000 45.553 14.280 1.840 0.000 0.000 0.000 0.000 0.000 0.000 2.472 - 10.45 51.08 1980 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1981 0.000 1.862 2.662 0.000 4.882 0.000 0.000 16.239 0.000 9.785 9.132 15.099 - 10.45 51.08 1982 12.824 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1983 0.000 0.000 0.000 46.132 6.329 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1984 0.000 0.000 0.000 4.632 21.330 8.126 0.000 0.000 0.000 1.754 24.125 0.000 - 10.45 51.08 1985 3.261 0.000 0.000 2.749 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1986 0.000 0.000 8.311 10.138 0.000 0.000 0.000 0.000 0.000 1.266 0.000 8.231 - 10.45 51.08 1987 15.794 4.770 39.709 0.000 0.000 24.324 0.000 0.000 25.171 0.000 3.809 16.710 - 10.45 51.08 1988 17.893 21.363 55.346 15.318 0.000 0.000 0.000 0.000 0.000 0.000 0.000 3.929 - 10.45 51.08 1989 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 6.711 - 10.45 51.08 1990 0.000 0.000 3.115 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1991 0.000 0.000 0.000 0.000 0.000 0.000 0.000 1.390 0.000 0.000 0.000 0.000 - 10.45 51.08 1992 0.000 0.000 22.543 0.000 0.000 0.000 11.977 0.000 0.000 0.000 5.797 10.303 - 10.45 51.08 1993 1.947 1.220 0.000 0.000 0.000 1.306 20.746 0.000 0.000 0.000 0.000 25.540 - 10.45 51.08 1994 0.319 0.000 27.944 74.493 23.515 11.854 14.120 20.343 19.596 10.500 22.989 20.057 - 10.45 51.08 1995 33.078 32.045 12.857 21.282 37.656 54.323 58.814 16.563 60.224 8.861 16.372 11.214 - 10.45 51.08 1996 1.696 16.904 12.941 4.626 18.560 0.858 2.127 9.977 16.878 25.501 37.435 39.089 - 10.45 51.08 1997 8.927 32.315 28.793 10.833 0.992 0.000 28.855 0.000 0.000 0.000 0.000 13.829 - 10.45 51.08 1998 12.751 7.585 21.468 10.032 0.856 0.000 0.000 0.000 0.000 41.075 52.951 6.257 - 10.45 51.08 1999 16.897 16.185 17.662 8.157 0.000 0.000 8.697 0.000 0.000 0.000 1.543 6.669 - 10.45 51.08 2000 21.982 39.724 40.935 2.726 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 2001 0.000 0.000 22.665 14.583 0.000 0.000 0.000 0.000 0.000 0.000 5.463 0.846 - 10.45 51.08 2002 0.000 22.451 28.979 4.283 9.805 18.220 9.942 0.000 0.000 0.000 73.227 86.239 - 10.45 51.08 2003 25.540 9.399 10.301 0.354 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 2004 0.000 0.000 0.000 0.000 55.573 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 2005 0.000 2.351 0.348 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 2006 0.000 0.000 3.546 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 2007 0.000 0.000 0.000 0.000 0.000 0.000 0.000 59.491 49.104 0.000 0.000 0.854 - 10.45 51.08 2008 0.000 0.000 0.000 11.740 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.041 - 10.45 51.08 2009 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 6.358 31.320 - 10.45 51.08 2010 2.390 22.558 0.000 0.000 5.141 0.000 3.804 29.903 10.256 0.951 38.556 3.565 - 10.45 51.08 2011 74.150 7.847 3.373 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 2012 4.039 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 diff --git a/rLPJGUESS/inst/extdata/outputsForTests/run_distinterval/outDirectory/mwcont_lower.out b/rLPJGUESS/inst/extdata/outputsForTests/run_distinterval/outDirectory/mwcont_lower.out deleted file mode 100644 index af9f10c..0000000 --- a/rLPJGUESS/inst/extdata/outputsForTests/run_distinterval/outDirectory/mwcont_lower.out +++ /dev/null @@ -1,63 +0,0 @@ - Lon Lat Year Jan Feb Mar Apr May Jun Jul Aug Sep Oct Nov Dec - 10.45 51.08 1951 0.232 0.360 0.481 0.572 0.487 0.429 0.377 0.324 0.281 0.238 0.328 0.487 - 10.45 51.08 1952 0.609 0.746 0.930 0.960 0.925 0.843 0.596 0.282 0.284 0.519 0.858 0.981 - 10.45 51.08 1953 1.000 0.999 0.994 0.933 0.755 0.572 0.488 0.389 0.242 0.165 0.174 0.200 - 10.45 51.08 1954 0.317 0.410 0.514 0.639 0.609 0.411 0.307 0.328 0.344 0.455 0.542 0.657 - 10.45 51.08 1955 0.811 0.983 0.996 0.992 0.920 0.797 0.710 0.753 0.747 0.749 0.804 0.934 - 10.45 51.08 1956 1.000 1.000 1.000 0.998 1.000 0.998 0.997 1.000 1.000 1.000 1.000 1.000 - 10.45 51.08 1957 1.000 1.000 1.000 1.000 0.999 0.999 0.999 1.000 1.000 0.999 1.000 1.000 - 10.45 51.08 1958 1.000 1.000 0.996 0.997 0.995 0.983 0.974 0.937 0.922 0.961 1.000 1.000 - 10.45 51.08 1959 1.000 1.000 0.998 0.991 0.965 0.881 0.761 0.682 0.605 0.486 0.560 0.641 - 10.45 51.08 1960 0.795 0.956 0.999 0.995 0.980 0.932 0.797 0.697 0.676 0.785 0.987 1.000 - 10.45 51.08 1961 1.000 1.000 0.998 0.996 0.991 0.973 0.826 0.736 0.646 0.577 0.570 0.670 - 10.45 51.08 1962 0.807 0.962 0.996 0.994 0.988 0.884 0.709 0.543 0.406 0.342 0.325 0.357 - 10.45 51.08 1963 0.386 0.392 0.532 0.702 0.668 0.503 0.397 0.269 0.238 0.296 0.400 0.502 - 10.45 51.08 1964 0.541 0.683 0.761 0.904 0.929 0.735 0.438 0.185 0.018 0.002 0.018 0.055 - 10.45 51.08 1965 0.136 0.223 0.327 0.466 0.510 0.414 0.291 0.150 0.030 0.001 0.010 0.202 - 10.45 51.08 1966 0.380 0.527 0.617 0.742 0.690 0.436 0.340 0.292 0.293 0.253 0.429 0.615 - 10.45 51.08 1967 0.822 0.944 0.998 0.987 0.866 0.689 0.482 0.170 0.079 0.073 0.109 0.221 - 10.45 51.08 1968 0.339 0.480 0.637 0.671 0.612 0.437 0.105 0.000 0.002 0.050 0.103 0.171 - 10.45 51.08 1969 0.261 0.386 0.477 0.726 0.894 0.825 0.612 0.215 0.122 0.070 0.095 0.132 - 10.45 51.08 1970 0.150 0.337 0.547 0.744 0.872 0.759 0.419 0.220 0.151 0.135 0.310 0.439 - 10.45 51.08 1971 0.497 0.636 0.737 0.765 0.652 0.477 0.188 0.000 0.000 0.003 0.026 0.124 - 10.45 51.08 1972 0.162 0.200 0.248 0.334 0.306 0.216 0.107 0.089 0.081 0.049 0.102 0.188 - 10.45 51.08 1973 0.217 0.342 0.489 0.564 0.559 0.330 0.031 0.000 0.003 0.039 0.138 0.282 - 10.45 51.08 1974 0.410 0.510 0.634 0.605 0.532 0.418 0.381 0.223 0.096 0.082 0.281 0.515 - 10.45 51.08 1975 0.690 0.770 0.853 0.980 0.907 0.728 0.551 0.217 0.024 0.007 0.023 0.080 - 10.45 51.08 1976 0.246 0.408 0.472 0.495 0.364 0.153 0.000 0.000 0.000 0.005 0.029 0.097 - 10.45 51.08 1977 0.174 0.314 0.434 0.542 0.495 0.313 0.209 0.259 0.342 0.371 0.551 0.727 - 10.45 51.08 1978 0.866 0.922 0.996 0.983 0.928 0.759 0.563 0.360 0.250 0.276 0.287 0.363 - 10.45 51.08 1979 0.466 0.495 0.742 0.995 0.956 0.756 0.573 0.425 0.250 0.169 0.198 0.321 - 10.45 51.08 1980 0.458 0.646 0.715 0.837 0.818 0.597 0.461 0.222 0.008 0.003 0.029 0.110 - 10.45 51.08 1981 0.257 0.360 0.500 0.527 0.500 0.436 0.307 0.175 0.121 0.186 0.334 0.547 - 10.45 51.08 1982 0.707 0.800 0.863 0.902 0.815 0.523 0.231 0.014 0.000 0.025 0.041 0.101 - 10.45 51.08 1983 0.186 0.283 0.342 0.537 0.599 0.567 0.287 0.014 0.001 0.000 0.000 0.010 - 10.45 51.08 1984 0.069 0.228 0.318 0.458 0.523 0.639 0.517 0.429 0.388 0.534 0.616 0.708 - 10.45 51.08 1985 0.756 0.864 0.930 0.982 0.898 0.675 0.468 0.213 0.045 0.000 0.001 0.039 - 10.45 51.08 1986 0.175 0.255 0.369 0.586 0.614 0.609 0.370 0.107 0.014 0.015 0.067 0.117 - 10.45 51.08 1987 0.319 0.444 0.583 0.755 0.671 0.729 0.691 0.698 0.678 0.708 0.830 0.981 - 10.45 51.08 1988 1.000 1.000 0.999 0.984 0.838 0.531 0.338 0.117 0.000 0.000 0.004 0.137 - 10.45 51.08 1989 0.328 0.388 0.536 0.578 0.490 0.230 0.020 0.000 0.001 0.004 0.064 0.197 - 10.45 51.08 1990 0.318 0.409 0.531 0.533 0.431 0.204 0.080 0.000 0.002 0.001 0.029 0.138 - 10.45 51.08 1991 0.302 0.347 0.407 0.395 0.315 0.112 0.001 0.006 0.000 0.000 0.004 0.028 - 10.45 51.08 1992 0.111 0.166 0.270 0.420 0.326 0.057 0.012 0.000 0.004 0.005 0.074 0.260 - 10.45 51.08 1993 0.410 0.518 0.638 0.652 0.442 0.319 0.231 0.211 0.162 0.196 0.309 0.502 - 10.45 51.08 1994 0.749 0.906 0.999 0.999 0.999 0.999 0.998 1.000 1.000 1.000 1.000 1.000 - 10.45 51.08 1995 1.000 1.000 1.000 1.000 1.000 0.999 0.998 1.000 1.000 1.000 1.000 1.000 - 10.45 51.08 1996 1.000 1.000 1.000 0.995 0.995 0.974 0.980 0.985 0.998 0.999 1.000 0.999 - 10.45 51.08 1997 0.999 0.999 0.999 0.997 0.985 0.910 0.855 0.901 0.854 0.837 0.894 0.983 - 10.45 51.08 1998 1.000 1.000 0.999 0.995 0.950 0.861 0.789 0.688 0.679 0.896 1.000 1.000 - 10.45 51.08 1999 1.000 1.000 0.999 0.995 0.936 0.883 0.881 0.807 0.730 0.696 0.746 0.907 - 10.45 51.08 2000 0.997 0.999 0.998 0.985 0.865 0.669 0.504 0.377 0.318 0.374 0.449 0.525 - 10.45 51.08 2001 0.606 0.684 0.832 0.995 0.933 0.801 0.717 0.562 0.450 0.485 0.568 0.816 - 10.45 51.08 2002 0.895 0.982 0.997 0.978 0.976 0.927 0.827 0.797 0.732 0.822 0.996 1.000 - 10.45 51.08 2003 1.000 1.000 0.998 0.973 0.837 0.641 0.353 0.034 0.002 0.006 0.021 0.103 - 10.45 51.08 2004 0.230 0.343 0.396 0.391 0.428 0.295 0.122 0.002 0.001 0.001 0.020 0.084 - 10.45 51.08 2005 0.160 0.285 0.401 0.471 0.390 0.149 0.000 0.003 0.000 0.001 0.008 0.049 - 10.45 51.08 2006 0.120 0.168 0.233 0.364 0.280 0.119 0.001 0.003 0.003 0.002 0.031 0.077 - 10.45 51.08 2007 0.186 0.315 0.470 0.498 0.233 0.040 0.010 0.030 0.015 0.055 0.202 0.450 - 10.45 51.08 2008 0.547 0.666 0.805 0.965 0.874 0.575 0.268 0.013 0.001 0.011 0.070 0.205 - 10.45 51.08 2009 0.288 0.359 0.570 0.619 0.544 0.424 0.243 0.037 0.002 0.039 0.203 0.442 - 10.45 51.08 2010 0.588 0.666 0.831 0.853 0.796 0.774 0.402 0.405 0.526 0.547 0.665 0.809 - 10.45 51.08 2011 0.940 1.000 0.995 0.912 0.621 0.212 0.027 0.000 0.000 0.004 0.004 0.048 - 10.45 51.08 2012 0.211 0.310 0.355 0.313 0.156 0.004 0.015 0.000 0.000 0.000 0.009 0.101 diff --git a/rLPJGUESS/inst/extdata/outputsForTests/run_distinterval/outDirectory/mwcont_upper.out b/rLPJGUESS/inst/extdata/outputsForTests/run_distinterval/outDirectory/mwcont_upper.out deleted file mode 100644 index 79a246a..0000000 --- a/rLPJGUESS/inst/extdata/outputsForTests/run_distinterval/outDirectory/mwcont_upper.out +++ /dev/null @@ -1,63 +0,0 @@ - Lon Lat Year Jan Feb Mar Apr May Jun Jul Aug Sep Oct Nov Dec - 10.45 51.08 1951 0.827 0.851 0.816 0.513 0.281 0.774 0.591 0.724 0.592 0.516 0.849 0.902 - 10.45 51.08 1952 0.909 0.926 0.909 0.734 0.731 0.489 0.090 0.121 0.765 0.936 0.924 0.938 - 10.45 51.08 1953 0.918 0.944 0.710 0.359 0.151 0.341 0.660 0.452 0.196 0.244 0.518 0.535 - 10.45 51.08 1954 0.773 0.873 0.740 0.653 0.361 0.182 0.559 0.725 0.663 0.808 0.805 0.850 - 10.45 51.08 1955 0.940 0.928 0.917 0.716 0.419 0.378 0.642 0.838 0.671 0.622 0.852 0.884 - 10.45 51.08 1956 0.906 0.862 0.826 0.727 0.612 0.763 0.794 0.657 0.573 0.664 0.805 0.803 - 10.45 51.08 1957 0.897 0.841 0.767 0.687 0.674 0.727 0.838 0.801 0.776 0.901 0.913 0.921 - 10.45 51.08 1958 0.926 0.840 0.901 0.736 0.555 0.657 0.583 0.344 0.245 0.612 0.916 0.913 - 10.45 51.08 1959 0.912 0.809 0.599 0.448 0.251 0.197 0.006 0.332 0.065 0.079 0.774 0.820 - 10.45 51.08 1960 0.884 0.888 0.763 0.483 0.581 0.390 0.061 0.293 0.572 0.878 0.913 0.933 - 10.45 51.08 1961 0.939 0.876 0.634 0.768 0.850 0.749 0.212 0.302 0.192 0.052 0.341 0.779 - 10.45 51.08 1962 0.899 0.897 0.912 0.678 0.525 0.203 0.257 0.131 0.224 0.133 0.156 0.466 - 10.45 51.08 1963 0.591 0.598 0.825 0.703 0.413 0.296 0.467 0.579 0.477 0.670 0.794 0.898 - 10.45 51.08 1964 0.883 0.873 0.755 0.688 0.668 0.354 0.100 0.144 0.033 0.149 0.385 0.545 - 10.45 51.08 1965 0.739 0.819 0.863 0.616 0.574 0.562 0.474 0.377 0.308 0.127 0.326 0.839 - 10.45 51.08 1966 0.905 0.930 0.746 0.674 0.360 0.203 0.797 0.636 0.690 0.540 0.918 0.918 - 10.45 51.08 1967 0.919 0.811 0.727 0.587 0.252 0.489 0.250 0.174 0.497 0.580 0.652 0.760 - 10.45 51.08 1968 0.907 0.884 0.840 0.492 0.523 0.221 0.073 0.053 0.167 0.673 0.759 0.741 - 10.45 51.08 1969 0.766 0.793 0.895 0.823 0.748 0.729 0.293 0.221 0.661 0.481 0.589 0.680 - 10.45 51.08 1970 0.714 0.929 0.898 0.812 0.666 0.262 0.145 0.571 0.533 0.613 0.898 0.901 - 10.45 51.08 1971 0.875 0.795 0.698 0.526 0.344 0.338 0.070 0.045 0.028 0.198 0.541 0.867 - 10.45 51.08 1972 0.802 0.800 0.774 0.602 0.583 0.625 0.545 0.868 0.618 0.467 0.715 0.845 - 10.45 51.08 1973 0.807 0.871 0.812 0.609 0.445 0.085 0.044 0.017 0.235 0.559 0.900 0.911 - 10.45 51.08 1974 0.877 0.829 0.805 0.420 0.446 0.474 0.674 0.390 0.310 0.555 0.886 0.921 - 10.45 51.08 1975 0.891 0.823 0.763 0.728 0.565 0.392 0.343 0.120 0.248 0.242 0.417 0.547 - 10.45 51.08 1976 0.852 0.855 0.677 0.480 0.182 0.365 0.021 0.032 0.025 0.318 0.462 0.629 - 10.45 51.08 1977 0.655 0.728 0.788 0.687 0.407 0.362 0.694 0.853 0.826 0.816 0.918 0.916 - 10.45 51.08 1978 0.865 0.810 0.723 0.515 0.500 0.170 0.196 0.222 0.372 0.761 0.711 0.782 - 10.45 51.08 1979 0.854 0.880 0.911 0.796 0.535 0.254 0.390 0.266 0.167 0.195 0.620 0.870 - 10.45 51.08 1980 0.877 0.821 0.663 0.626 0.437 0.197 0.364 0.047 0.070 0.230 0.474 0.754 - 10.45 51.08 1981 0.870 0.893 0.833 0.565 0.800 0.723 0.316 0.608 0.518 0.908 0.903 0.943 - 10.45 51.08 1982 0.919 0.866 0.668 0.449 0.366 0.080 0.089 0.033 0.000 0.404 0.493 0.560 - 10.45 51.08 1983 0.605 0.656 0.645 0.849 0.711 0.551 0.089 0.242 0.146 0.059 0.031 0.273 - 10.45 51.08 1984 0.498 0.806 0.731 0.780 0.722 0.748 0.538 0.643 0.751 0.890 0.903 0.910 - 10.45 51.08 1985 0.916 0.878 0.750 0.567 0.252 0.214 0.167 0.135 0.103 0.000 0.077 0.497 - 10.45 51.08 1986 0.840 0.859 0.843 0.868 0.633 0.705 0.140 0.173 0.443 0.550 0.896 0.826 - 10.45 51.08 1987 0.941 0.923 0.946 0.651 0.518 0.888 0.585 0.755 0.697 0.819 0.843 0.924 - 10.45 51.08 1988 0.890 0.854 0.883 0.689 0.202 0.110 0.483 0.159 0.023 0.044 0.162 0.754 - 10.45 51.08 1989 0.877 0.754 0.741 0.534 0.377 0.207 0.063 0.039 0.091 0.256 0.747 0.879 - 10.45 51.08 1990 0.884 0.795 0.769 0.578 0.265 0.504 0.421 0.054 0.202 0.110 0.395 0.730 - 10.45 51.08 1991 0.772 0.728 0.645 0.399 0.331 0.149 0.046 0.531 0.020 0.018 0.155 0.374 - 10.45 51.08 1992 0.706 0.700 0.734 0.667 0.305 0.263 0.574 0.094 0.286 0.221 0.635 0.931 - 10.45 51.08 1993 0.924 0.923 0.793 0.507 0.216 0.773 0.733 0.582 0.595 0.693 0.861 0.911 - 10.45 51.08 1994 0.916 0.867 0.844 0.755 0.656 0.600 0.629 0.603 0.718 0.662 0.756 0.915 - 10.45 51.08 1995 0.904 0.891 0.738 0.704 0.783 0.862 0.798 0.677 0.865 0.834 0.798 0.812 - 10.45 51.08 1996 0.872 0.863 0.742 0.545 0.664 0.433 0.580 0.576 0.788 0.788 0.924 0.922 - 10.45 51.08 1997 0.918 0.892 0.822 0.649 0.399 0.062 0.405 0.453 0.231 0.348 0.618 0.812 - 10.45 51.08 1998 0.856 0.758 0.749 0.567 0.455 0.273 0.283 0.110 0.620 0.918 0.936 0.890 - 10.45 51.08 1999 0.843 0.810 0.760 0.622 0.383 0.592 0.688 0.440 0.301 0.323 0.763 0.912 - 10.45 51.08 2000 0.902 0.908 0.867 0.643 0.319 0.087 0.270 0.265 0.583 0.726 0.702 0.692 - 10.45 51.08 2001 0.684 0.742 0.798 0.778 0.542 0.408 0.644 0.200 0.375 0.532 0.765 0.927 - 10.45 51.08 2002 0.896 0.842 0.871 0.691 0.752 0.694 0.605 0.745 0.581 0.798 0.921 0.925 - 10.45 51.08 2003 0.928 0.898 0.776 0.434 0.263 0.391 0.061 0.014 0.203 0.288 0.455 0.748 - 10.45 51.08 2004 0.818 0.850 0.694 0.507 0.801 0.351 0.351 0.031 0.062 0.113 0.376 0.739 - 10.45 51.08 2005 0.790 0.882 0.853 0.584 0.414 0.070 0.093 0.282 0.102 0.189 0.271 0.507 - 10.45 51.08 2006 0.600 0.617 0.746 0.663 0.406 0.426 0.262 0.205 0.225 0.257 0.438 0.523 - 10.45 51.08 2007 0.692 0.748 0.703 0.442 0.212 0.489 0.507 0.771 0.623 0.837 0.876 0.915 - 10.45 51.08 2008 0.860 0.763 0.748 0.789 0.360 0.067 0.189 0.018 0.075 0.383 0.716 0.905 - 10.45 51.08 2009 0.854 0.802 0.804 0.549 0.618 0.443 0.320 0.089 0.200 0.495 0.894 0.938 - 10.45 51.08 2010 0.949 0.949 0.801 0.493 0.647 0.389 0.349 0.850 0.704 0.893 0.927 0.941 - 10.45 51.08 2011 0.940 0.838 0.684 0.387 0.034 0.093 0.360 0.066 0.061 0.224 0.268 0.496 - 10.45 51.08 2012 0.823 0.853 0.628 0.370 0.188 0.327 0.491 0.086 0.033 0.051 0.271 0.768 diff --git a/rLPJGUESS/inst/extdata/outputsForTests/run_distinterval/outDirectory/nflux.out b/rLPJGUESS/inst/extdata/outputsForTests/run_distinterval/outDirectory/nflux.out deleted file mode 100644 index a5836c8..0000000 --- a/rLPJGUESS/inst/extdata/outputsForTests/run_distinterval/outDirectory/nflux.out +++ /dev/null @@ -1,63 +0,0 @@ - Lon Lat Year dep fix fert flux leach NEE - 10.45 51.08 1951 -11.23 -2.49 -0.00 1.33 0.01 -12.38 - 10.45 51.08 1952 -11.23 -2.32 -0.00 3.43 0.24 -9.89 - 10.45 51.08 1953 -11.23 -2.44 -0.00 3.30 0.26 -10.10 - 10.45 51.08 1954 -11.23 -2.88 -0.00 2.35 0.00 -11.75 - 10.45 51.08 1955 -11.23 -2.75 -0.00 1.17 0.30 -12.51 - 10.45 51.08 1956 -11.23 -0.00 -0.00 0.85 1.33 -9.05 - 10.45 51.08 1957 -11.23 -2.93 -0.00 1.29 1.09 -11.78 - 10.45 51.08 1958 -11.23 -2.65 -0.00 4.10 0.68 -9.10 - 10.45 51.08 1959 -11.23 -2.66 -0.00 7.24 0.12 -6.54 - 10.45 51.08 1960 -14.10 -2.85 -0.00 5.44 0.29 -11.22 - 10.45 51.08 1961 -14.10 -2.71 -0.00 6.19 0.53 -10.09 - 10.45 51.08 1962 -14.10 -2.86 -0.00 6.53 0.19 -10.24 - 10.45 51.08 1963 -14.10 -2.61 -0.00 3.30 0.01 -13.40 - 10.45 51.08 1964 -14.10 -2.27 -0.00 6.47 0.00 -9.90 - 10.45 51.08 1965 -14.10 -3.28 -0.00 5.13 0.01 -12.24 - 10.45 51.08 1966 -14.10 -3.34 -0.00 3.64 0.02 -13.77 - 10.45 51.08 1967 -14.10 -3.44 -0.00 5.71 0.15 -11.68 - 10.45 51.08 1968 -14.10 -3.24 -0.00 6.38 0.01 -10.95 - 10.45 51.08 1969 -14.10 -2.77 -0.00 4.68 0.01 -12.17 - 10.45 51.08 1970 -16.97 -2.84 -0.00 5.14 0.01 -14.66 - 10.45 51.08 1971 -16.97 -2.89 -0.00 6.39 0.00 -13.46 - 10.45 51.08 1972 -16.97 -2.82 -0.00 1.69 0.00 -18.10 - 10.45 51.08 1973 -16.97 -2.59 -0.00 6.21 0.00 -13.35 - 10.45 51.08 1974 -16.97 -2.77 -0.00 2.39 0.01 -17.34 - 10.45 51.08 1975 -16.97 -2.46 -0.00 5.40 0.05 -13.98 - 10.45 51.08 1976 -16.97 -2.52 -0.00 5.88 0.00 -13.61 - 10.45 51.08 1977 -16.97 -2.50 -0.00 2.84 0.01 -16.62 - 10.45 51.08 1978 -16.97 -3.07 -0.00 4.85 0.09 -15.10 - 10.45 51.08 1979 -16.97 -2.78 -0.00 4.82 0.07 -14.86 - 10.45 51.08 1980 -17.99 -2.86 -0.00 5.24 0.00 -15.61 - 10.45 51.08 1981 -17.99 -2.79 -0.00 1.88 0.02 -18.88 - 10.45 51.08 1982 -17.99 -2.35 -0.00 5.68 0.01 -14.66 - 10.45 51.08 1983 -17.99 -1.97 -0.00 5.14 0.01 -14.81 - 10.45 51.08 1984 -17.99 -2.64 -0.00 1.47 0.02 -19.15 - 10.45 51.08 1985 -17.99 -2.63 -0.00 6.12 0.02 -14.48 - 10.45 51.08 1986 -17.99 -2.21 -0.00 4.08 0.02 -16.11 - 10.45 51.08 1987 -17.99 -3.00 -0.00 1.43 0.08 -19.49 - 10.45 51.08 1988 -17.99 -2.46 -0.00 5.60 0.47 -14.39 - 10.45 51.08 1989 -17.99 -2.45 -0.00 4.77 0.00 -15.67 - 10.45 51.08 1990 -19.66 -2.53 -0.00 4.49 0.00 -17.69 - 10.45 51.08 1991 -19.66 -2.76 -0.00 5.07 0.00 -17.34 - 10.45 51.08 1992 -19.66 -1.82 -0.00 4.27 0.01 -17.19 - 10.45 51.08 1993 -19.66 -2.25 -0.00 2.65 0.01 -19.24 - 10.45 51.08 1994 -19.66 -0.00 -0.00 0.92 1.00 -17.73 - 10.45 51.08 1995 -19.66 -2.50 -0.00 1.31 1.03 -19.82 - 10.45 51.08 1996 -19.66 -2.21 -0.00 1.74 0.66 -19.46 - 10.45 51.08 1997 -19.66 -2.70 -0.00 5.65 0.43 -16.27 - 10.45 51.08 1998 -19.66 -2.87 -0.00 4.71 0.47 -17.34 - 10.45 51.08 1999 -19.66 -2.47 -0.00 1.82 0.30 -20.01 - 10.45 51.08 2000 -21.34 -2.43 -0.00 5.41 0.46 -17.91 - 10.45 51.08 2001 -21.34 -2.85 -0.00 3.73 0.09 -20.38 - 10.45 51.08 2002 -21.34 -3.01 -0.00 1.60 0.55 -22.20 - 10.45 51.08 2003 -21.34 -2.45 -0.00 5.85 0.19 -17.75 - 10.45 51.08 2004 -21.34 -3.03 -0.00 5.58 0.00 -18.79 - 10.45 51.08 2005 -21.34 -2.60 -0.00 5.63 0.01 -18.31 - 10.45 51.08 2006 -21.34 -2.41 -0.00 5.34 0.00 -18.41 - 10.45 51.08 2007 -21.34 -2.43 -0.00 3.47 0.00 -20.31 - 10.45 51.08 2008 -21.34 -2.97 -0.00 5.61 0.01 -18.69 - 10.45 51.08 2009 -21.34 -2.35 -0.00 4.92 0.01 -18.76 - 10.45 51.08 2010 -20.03 -2.70 -0.00 3.60 0.02 -19.11 - 10.45 51.08 2011 -20.03 -2.86 -0.00 6.03 0.11 -16.74 - 10.45 51.08 2012 -20.03 -2.72 -0.00 5.26 0.00 -17.49 diff --git a/rLPJGUESS/inst/extdata/outputsForTests/run_distinterval/outDirectory/ngases.out b/rLPJGUESS/inst/extdata/outputsForTests/run_distinterval/outDirectory/ngases.out deleted file mode 100644 index e767c1b..0000000 --- a/rLPJGUESS/inst/extdata/outputsForTests/run_distinterval/outDirectory/ngases.out +++ /dev/null @@ -1,63 +0,0 @@ - Lon Lat Year NH3 NO NO2 N2O N2 NSoil Total - 10.45 51.08 1951 0.094 0.120 0.030 0.014 0.139 0.931 1.329 - 10.45 51.08 1952 0.547 0.702 0.176 0.081 0.811 1.111 3.427 - 10.45 51.08 1953 0.516 0.662 0.166 0.076 0.765 1.118 3.303 - 10.45 51.08 1954 0.330 0.424 0.106 0.049 0.490 0.953 2.351 - 10.45 51.08 1955 0.077 0.098 0.025 0.011 0.114 0.846 1.171 - 10.45 51.08 1956 0.186 0.239 0.060 0.028 0.276 0.056 0.845 - 10.45 51.08 1957 0.179 0.230 0.058 0.027 0.266 0.526 1.286 - 10.45 51.08 1958 0.720 0.925 0.232 0.107 1.068 1.044 4.097 - 10.45 51.08 1959 1.514 1.944 0.488 0.225 2.246 0.824 7.240 - 10.45 51.08 1960 1.075 1.380 0.346 0.159 1.594 0.889 5.442 - 10.45 51.08 1961 1.224 1.571 0.394 0.182 1.815 0.999 6.185 - 10.45 51.08 1962 1.255 1.611 0.404 0.186 1.861 1.212 6.529 - 10.45 51.08 1963 0.530 0.681 0.171 0.079 0.786 1.050 3.296 - 10.45 51.08 1964 1.227 1.575 0.395 0.182 1.819 1.268 6.466 - 10.45 51.08 1965 0.939 1.206 0.302 0.139 1.393 1.151 5.131 - 10.45 51.08 1966 0.566 0.727 0.182 0.084 0.839 1.245 3.643 - 10.45 51.08 1967 0.979 1.257 0.315 0.145 1.452 1.564 5.714 - 10.45 51.08 1968 1.142 1.466 0.368 0.169 1.693 1.545 6.383 - 10.45 51.08 1969 0.783 1.006 0.252 0.116 1.162 1.363 4.681 - 10.45 51.08 1970 0.865 1.110 0.278 0.128 1.282 1.473 5.137 - 10.45 51.08 1971 1.111 1.427 0.358 0.165 1.648 1.684 6.393 - 10.45 51.08 1972 0.127 0.163 0.041 0.019 0.189 1.148 1.687 - 10.45 51.08 1973 1.056 1.356 0.340 0.157 1.566 1.731 6.207 - 10.45 51.08 1974 0.249 0.320 0.080 0.037 0.369 1.338 2.393 - 10.45 51.08 1975 0.883 1.133 0.284 0.131 1.309 1.658 5.399 - 10.45 51.08 1976 1.030 1.322 0.332 0.153 1.527 1.514 5.877 - 10.45 51.08 1977 0.431 0.554 0.139 0.064 0.640 1.017 2.844 - 10.45 51.08 1978 0.809 1.039 0.261 0.120 1.200 1.419 4.848 - 10.45 51.08 1979 0.793 1.018 0.255 0.118 1.176 1.462 4.821 - 10.45 51.08 1980 0.914 1.173 0.294 0.135 1.355 1.367 5.238 - 10.45 51.08 1981 0.162 0.208 0.052 0.024 0.240 1.194 1.879 - 10.45 51.08 1982 0.954 1.225 0.307 0.141 1.415 1.639 5.681 - 10.45 51.08 1983 0.905 1.162 0.292 0.134 1.343 1.307 5.143 - 10.45 51.08 1984 0.101 0.129 0.032 0.015 0.149 1.041 1.467 - 10.45 51.08 1985 1.087 1.396 0.350 0.161 1.613 1.517 6.125 - 10.45 51.08 1986 0.649 0.833 0.209 0.096 0.962 1.331 4.080 - 10.45 51.08 1987 0.097 0.125 0.031 0.014 0.144 1.017 1.429 - 10.45 51.08 1988 0.953 1.224 0.307 0.141 1.414 1.556 5.596 - 10.45 51.08 1989 0.789 1.013 0.254 0.117 1.171 1.427 4.772 - 10.45 51.08 1990 0.751 0.964 0.242 0.111 1.113 1.308 4.489 - 10.45 51.08 1991 0.868 1.115 0.280 0.129 1.288 1.390 5.070 - 10.45 51.08 1992 0.688 0.883 0.221 0.102 1.020 1.361 4.275 - 10.45 51.08 1993 0.366 0.470 0.118 0.054 0.543 1.098 2.648 - 10.45 51.08 1994 0.151 0.194 0.049 0.022 0.224 0.282 0.921 - 10.45 51.08 1995 0.145 0.186 0.047 0.021 0.215 0.700 1.314 - 10.45 51.08 1996 0.142 0.183 0.046 0.021 0.211 1.140 1.744 - 10.45 51.08 1997 1.129 1.450 0.364 0.167 1.675 0.868 5.654 - 10.45 51.08 1998 0.846 1.086 0.272 0.125 1.255 1.128 4.712 - 10.45 51.08 1999 0.162 0.208 0.052 0.024 0.240 1.136 1.821 - 10.45 51.08 2000 0.914 1.173 0.294 0.136 1.355 1.534 5.407 - 10.45 51.08 2001 0.597 0.766 0.192 0.088 0.885 1.197 3.726 - 10.45 51.08 2002 0.120 0.155 0.039 0.018 0.179 1.086 1.597 - 10.45 51.08 2003 0.988 1.269 0.318 0.147 1.466 1.663 5.850 - 10.45 51.08 2004 0.970 1.245 0.312 0.144 1.438 1.471 5.579 - 10.45 51.08 2005 0.941 1.208 0.303 0.140 1.396 1.639 5.626 - 10.45 51.08 2006 0.864 1.109 0.278 0.128 1.281 1.677 5.338 - 10.45 51.08 2007 0.463 0.595 0.149 0.069 0.687 1.502 3.465 - 10.45 51.08 2008 0.899 1.154 0.290 0.133 1.333 1.799 5.608 - 10.45 51.08 2009 0.776 0.996 0.250 0.115 1.151 1.628 4.916 - 10.45 51.08 2010 0.521 0.669 0.168 0.077 0.772 1.396 3.603 - 10.45 51.08 2011 0.976 1.254 0.314 0.145 1.448 1.895 6.032 - 10.45 51.08 2012 0.837 1.074 0.269 0.124 1.241 1.713 5.259 diff --git a/rLPJGUESS/inst/extdata/outputsForTests/run_distinterval/outDirectory/nlitter.out b/rLPJGUESS/inst/extdata/outputsForTests/run_distinterval/outDirectory/nlitter.out deleted file mode 100644 index f66e3a2..0000000 --- a/rLPJGUESS/inst/extdata/outputsForTests/run_distinterval/outDirectory/nlitter.out +++ /dev/null @@ -1,63 +0,0 @@ - Lon Lat Year Abi_alb BES Bet_pen Bet_pub Car_bet Cor_ave Fag_syl Fra_exc Jun_oxy MRS Pic_abi Pic_sit Pin_syl Pin_hal Pop_tre Que_coc Que_ile Que_pub Que_rob Til_cor Ulm_gla C3_gr C4_gr Total - 10.45 51.08 1951 0.00 0.00 0.00 73.28 0.73 0.00 6.64 3.15 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.38 0.24 2.93 0.00 0.00 90.36 - 10.45 51.08 1952 0.00 0.00 0.00 74.57 0.72 0.00 6.68 2.93 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.32 0.23 1.04 0.00 0.00 89.49 - 10.45 51.08 1953 0.00 0.00 0.00 99.78 0.70 0.00 6.74 1.01 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.24 0.22 1.01 0.00 0.00 112.70 - 10.45 51.08 1954 0.00 0.00 0.00 96.81 0.70 0.00 6.88 1.01 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.24 0.22 2.72 0.00 0.00 111.57 - 10.45 51.08 1955 0.00 0.00 0.00 589.16 7.64 0.00 34.13 9.56 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 30.64 4.18 7.64 0.00 0.00 682.95 - 10.45 51.08 1956 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 - 10.45 51.08 1957 0.00 0.14 0.81 0.72 0.35 0.50 0.20 0.49 0.00 0.00 0.07 0.30 0.24 0.00 0.74 0.00 0.00 0.00 0.65 0.47 0.48 42.70 0.00 48.86 - 10.45 51.08 1958 0.00 0.39 1.89 1.92 0.84 1.14 0.47 1.18 0.00 0.00 0.15 0.62 0.46 0.00 1.75 0.00 0.00 0.00 1.54 1.15 1.14 80.73 0.00 95.36 - 10.45 51.08 1959 0.00 0.60 3.62 3.91 1.63 2.03 0.91 2.27 0.00 0.00 0.24 1.01 0.73 0.00 3.34 0.00 0.00 0.00 2.98 2.20 2.19 84.66 0.00 112.31 - 10.45 51.08 1960 0.00 0.83 6.34 5.83 2.80 3.34 1.56 3.90 0.00 0.00 0.35 1.47 1.07 0.00 5.63 0.00 0.00 0.00 5.12 3.70 3.76 34.81 0.00 80.51 - 10.45 51.08 1961 0.00 1.00 9.00 9.66 4.12 5.05 2.32 5.74 0.00 0.00 0.44 1.81 1.36 0.00 8.04 0.00 0.00 0.00 7.54 5.18 5.53 37.54 0.00 104.31 - 10.45 51.08 1962 0.00 1.09 11.67 12.73 5.67 6.35 3.26 7.93 0.00 0.00 0.51 2.05 1.55 0.00 10.76 0.00 0.00 0.00 10.41 6.98 7.64 0.00 0.00 88.58 - 10.45 51.08 1963 0.00 1.11 15.26 16.84 7.15 7.81 4.15 10.01 0.00 0.00 0.54 2.09 1.63 0.00 13.55 0.00 0.00 0.00 13.14 8.84 9.65 0.00 0.00 111.79 - 10.45 51.08 1964 0.00 1.37 17.53 20.18 8.16 8.20 4.82 11.46 0.00 0.00 0.54 1.99 1.63 0.00 15.66 0.00 0.00 0.00 15.04 10.02 11.06 0.00 0.00 127.67 - 10.45 51.08 1965 0.00 1.21 16.79 23.51 9.06 8.15 5.44 12.75 0.00 0.00 0.52 1.86 1.56 0.00 15.95 0.00 0.00 0.00 16.72 10.96 12.90 0.00 0.00 137.39 - 10.45 51.08 1966 0.00 0.85 17.26 24.18 9.64 8.02 5.91 13.61 0.00 0.00 0.48 1.65 1.46 0.00 17.43 0.00 0.00 0.00 17.85 11.44 12.51 0.00 0.00 142.30 - 10.45 51.08 1967 0.00 0.84 21.83 27.18 10.12 7.85 6.34 15.06 0.00 0.00 0.45 1.42 1.34 0.00 18.47 0.00 0.00 0.00 18.82 12.38 13.63 0.00 0.00 155.73 - 10.45 51.08 1968 0.00 0.51 14.47 29.17 10.61 8.07 6.77 14.50 0.00 0.00 0.41 1.39 1.23 0.00 17.04 0.00 0.00 0.00 19.73 11.53 14.08 0.00 0.00 149.51 - 10.45 51.08 1969 0.00 0.34 17.08 31.56 10.77 6.87 7.06 14.92 0.00 0.00 0.34 0.84 1.17 0.00 16.91 0.00 0.00 0.00 20.36 11.78 14.43 0.00 0.00 154.43 - 10.45 51.08 1970 0.00 0.25 14.58 34.84 10.83 6.00 7.25 15.05 0.00 0.00 0.26 0.50 0.98 0.00 15.48 0.00 0.00 0.00 20.33 12.08 14.55 0.00 0.00 152.97 - 10.45 51.08 1971 0.00 0.29 14.18 37.10 11.84 7.35 7.41 15.05 0.00 0.00 0.19 0.13 0.92 0.00 14.77 0.00 0.00 0.00 21.23 10.52 14.60 0.00 0.00 155.59 - 10.45 51.08 1972 0.00 0.00 15.10 32.73 10.89 4.54 7.54 14.84 0.00 0.00 0.12 0.15 0.58 0.00 10.70 0.00 0.00 0.00 19.59 10.67 14.41 0.00 0.00 141.85 - 10.45 51.08 1973 0.00 0.00 14.01 37.70 10.33 5.42 7.50 15.44 0.00 0.00 0.08 0.15 0.48 0.00 12.77 0.00 0.00 0.00 21.05 11.23 14.09 0.00 0.00 150.24 - 10.45 51.08 1974 0.00 0.00 12.60 36.65 10.58 1.95 7.49 14.68 0.00 0.00 0.32 0.03 0.48 0.00 7.90 0.00 0.00 0.00 17.88 7.81 15.63 0.00 0.00 134.00 - 10.45 51.08 1975 0.00 0.00 12.83 35.56 7.86 1.70 7.61 13.51 0.00 0.00 0.00 0.04 0.34 0.00 7.57 0.00 0.00 0.00 19.16 8.47 13.98 0.00 0.00 128.62 - 10.45 51.08 1976 0.00 0.00 10.98 42.45 9.12 1.81 7.87 14.86 0.00 0.00 0.00 0.03 0.28 0.00 8.75 0.00 0.00 0.00 20.11 8.09 13.91 0.00 0.00 138.25 - 10.45 51.08 1977 0.00 0.00 11.50 38.90 7.39 2.13 7.96 12.92 0.00 0.00 0.00 0.01 0.12 0.00 7.45 0.00 0.00 0.00 16.62 7.31 12.00 0.00 0.00 124.31 - 10.45 51.08 1978 0.00 0.00 7.33 43.47 7.21 0.48 7.94 12.67 0.00 0.00 0.00 0.01 0.92 0.00 5.72 0.00 0.00 0.00 16.30 6.74 12.83 0.00 0.00 121.62 - 10.45 51.08 1979 0.00 0.00 8.94 40.84 8.45 0.75 8.25 13.09 0.00 0.00 0.00 0.01 0.00 0.00 3.65 0.00 0.00 0.00 17.95 7.26 11.69 0.00 0.00 120.88 - 10.45 51.08 1980 0.00 0.00 6.11 44.74 8.11 0.33 8.50 13.26 0.00 0.00 0.00 0.03 0.00 0.00 5.18 0.00 0.00 0.00 17.73 5.15 11.84 0.00 0.00 120.99 - 10.45 51.08 1981 0.00 0.00 6.69 48.29 6.64 0.60 8.82 14.64 0.00 0.00 0.00 0.00 0.00 0.00 2.93 0.00 0.00 0.00 17.53 5.01 12.01 0.00 0.00 123.17 - 10.45 51.08 1982 0.00 0.00 7.04 51.73 6.67 0.20 9.08 14.16 0.00 0.00 0.00 0.00 0.00 0.00 4.50 0.00 0.00 0.00 18.38 4.88 13.35 0.00 0.00 130.00 - 10.45 51.08 1983 0.00 0.00 3.94 53.80 6.32 2.31 9.11 12.00 0.00 0.00 0.01 0.00 0.00 0.00 2.98 0.00 0.00 0.00 14.32 4.44 12.32 0.00 0.00 121.55 - 10.45 51.08 1984 0.00 0.00 3.51 54.51 6.11 0.00 9.09 14.23 0.00 0.00 0.00 0.00 0.00 0.00 2.64 0.00 0.00 0.00 15.21 4.13 10.35 0.00 0.00 119.78 - 10.45 51.08 1985 0.00 0.00 3.09 54.90 5.78 0.00 8.86 11.54 0.00 0.00 0.00 0.00 0.00 0.00 3.14 0.00 0.00 0.00 14.12 4.55 9.84 0.00 0.00 115.82 - 10.45 51.08 1986 0.00 0.00 4.89 57.92 5.94 0.00 11.07 10.17 0.00 0.00 0.00 0.03 0.00 0.00 1.97 0.00 0.00 0.00 14.14 3.54 10.17 0.00 0.00 119.84 - 10.45 51.08 1987 0.00 0.00 1.18 67.67 5.79 0.00 8.37 11.29 0.00 0.00 0.00 0.00 0.00 0.00 0.90 0.00 0.00 0.00 12.11 3.32 9.95 0.00 0.00 120.58 - 10.45 51.08 1988 0.00 0.00 2.14 67.61 5.67 0.00 8.85 12.11 0.00 0.00 0.00 0.00 0.00 0.00 0.84 0.00 0.00 0.00 14.67 3.95 9.80 0.00 0.00 125.62 - 10.45 51.08 1989 0.00 0.00 0.87 62.61 6.80 0.00 8.98 8.38 0.00 0.00 0.00 0.00 0.00 0.00 0.78 0.00 0.00 0.00 10.90 2.83 9.63 0.00 0.00 111.77 - 10.45 51.08 1990 0.00 0.00 2.84 65.15 4.92 0.00 8.92 8.08 0.00 0.00 0.00 0.81 0.00 0.00 0.71 0.00 0.00 0.00 10.50 3.40 9.29 0.00 0.00 114.62 - 10.45 51.08 1991 0.00 0.00 1.49 66.64 6.10 0.00 8.98 9.36 0.00 0.00 0.00 0.00 0.00 0.00 3.22 0.00 0.00 0.00 10.33 2.33 9.13 0.00 0.00 117.59 - 10.45 51.08 1992 0.00 0.00 1.30 68.21 4.17 0.00 8.71 8.51 0.00 0.00 0.00 0.00 0.00 0.00 1.15 0.00 0.00 0.00 9.72 2.91 8.59 0.00 0.00 113.28 - 10.45 51.08 1993 0.00 0.00 1.14 341.90 20.68 0.00 31.36 31.74 0.00 0.00 0.00 0.00 0.00 0.00 1.87 0.00 0.00 0.00 45.80 13.63 40.56 0.00 0.00 528.69 - 10.45 51.08 1994 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 - 10.45 51.08 1995 0.00 0.13 0.76 0.59 0.47 0.32 0.24 0.40 0.00 0.00 0.08 0.24 0.25 0.00 0.62 0.00 0.00 0.38 0.35 0.44 0.78 42.70 0.00 48.75 - 10.45 51.08 1996 0.00 0.37 1.77 1.41 1.18 0.70 0.61 0.97 0.00 0.00 0.16 0.50 0.47 0.00 1.52 0.00 0.00 0.92 0.85 1.07 1.82 84.03 0.00 98.36 - 10.45 51.08 1997 0.00 0.56 3.36 2.79 2.28 1.28 1.18 1.87 0.00 0.00 0.26 0.80 0.74 0.00 2.57 0.00 0.00 1.77 1.63 2.07 3.47 72.97 0.00 99.62 - 10.45 51.08 1998 0.00 0.79 5.59 4.83 3.84 2.05 2.00 3.13 0.00 0.00 0.40 1.22 1.11 0.00 4.44 0.00 0.00 2.97 2.73 3.45 5.82 46.69 0.00 91.08 - 10.45 51.08 1999 0.00 0.99 8.35 7.64 5.79 3.17 3.04 4.72 0.00 0.00 0.52 1.55 1.42 0.00 6.49 0.00 0.00 4.47 4.11 5.36 8.77 38.17 0.00 104.56 - 10.45 51.08 2000 0.00 1.08 12.55 11.31 8.31 4.13 4.45 6.81 0.00 0.00 0.62 1.78 1.63 0.00 9.12 0.00 0.00 6.45 6.32 6.86 12.69 0.00 0.00 94.11 - 10.45 51.08 2001 0.00 1.10 14.48 14.62 10.54 4.89 5.69 8.66 0.00 0.00 0.67 1.84 1.74 0.00 11.54 0.00 0.00 8.21 7.06 9.04 16.15 0.00 0.00 116.24 - 10.45 51.08 2002 0.00 1.01 16.23 17.57 12.18 5.35 6.67 10.07 0.00 0.00 0.65 1.77 1.69 0.00 13.16 0.00 0.00 10.11 8.60 10.24 18.82 0.00 0.00 134.10 - 10.45 51.08 2003 0.00 1.02 17.40 19.99 13.18 5.43 7.35 11.59 0.00 0.00 0.60 1.55 1.56 0.00 14.59 0.00 0.00 9.80 9.19 11.02 20.55 0.00 0.00 144.83 - 10.45 51.08 2004 0.00 1.48 19.64 22.98 15.09 5.19 7.83 10.89 0.00 0.00 0.68 1.38 1.52 0.00 16.24 0.00 0.00 10.76 10.35 11.46 21.70 0.00 0.00 157.19 - 10.45 51.08 2005 0.00 0.80 17.47 22.46 12.76 5.50 8.15 11.49 0.00 0.00 0.45 0.98 1.29 0.00 12.56 0.00 0.00 10.84 9.99 11.61 23.03 0.00 0.00 149.37 - 10.45 51.08 2006 0.00 0.63 18.12 26.14 13.79 4.19 8.44 11.77 0.00 0.00 0.38 0.70 1.20 0.00 12.86 0.00 0.00 11.09 9.24 12.06 22.94 0.00 0.00 153.54 - 10.45 51.08 2007 0.00 0.20 15.54 25.38 13.93 3.88 8.87 12.04 0.00 0.00 0.28 0.33 1.14 0.00 15.93 0.00 0.00 11.64 9.74 11.75 22.74 0.00 0.00 153.40 - 10.45 51.08 2008 0.00 0.40 14.99 28.45 14.08 4.25 9.25 14.34 0.00 0.00 0.26 0.22 0.83 0.00 8.88 0.00 0.00 12.79 10.23 11.82 24.03 0.00 0.00 154.83 - 10.45 51.08 2009 0.00 0.00 14.80 30.58 14.33 3.96 9.62 12.42 0.00 0.00 0.18 0.18 0.60 0.00 9.50 0.00 0.00 11.59 10.30 10.72 25.63 0.00 0.00 154.39 - 10.45 51.08 2010 0.00 0.00 16.64 32.22 14.16 2.86 9.71 11.31 0.00 0.00 0.46 0.12 0.45 0.00 9.85 0.00 0.00 11.70 11.13 10.30 24.80 0.00 0.00 155.72 - 10.45 51.08 2011 0.00 0.00 15.30 36.37 15.75 2.40 9.90 11.35 0.00 0.00 0.00 0.10 0.29 0.00 8.45 0.00 0.00 11.76 9.50 10.23 24.39 0.00 0.00 155.78 - 10.45 51.08 2012 0.00 0.00 12.50 35.47 13.11 1.69 10.16 11.63 0.00 0.00 0.00 0.14 1.21 0.00 10.06 0.00 0.00 12.09 11.03 9.95 24.37 0.00 0.00 153.43 diff --git a/rLPJGUESS/inst/extdata/outputsForTests/run_distinterval/outDirectory/nmass.out b/rLPJGUESS/inst/extdata/outputsForTests/run_distinterval/outDirectory/nmass.out deleted file mode 100644 index d627e31..0000000 --- a/rLPJGUESS/inst/extdata/outputsForTests/run_distinterval/outDirectory/nmass.out +++ /dev/null @@ -1,63 +0,0 @@ - Lon Lat Year Abi_alb BES Bet_pen Bet_pub Car_bet Cor_ave Fag_syl Fra_exc Jun_oxy MRS Pic_abi Pic_sit Pin_syl Pin_hal Pop_tre Que_coc Que_ile Que_pub Que_rob Til_cor Ulm_gla C3_gr C4_gr Total - 10.45 51.08 1951 0.00 0.00 0.00 574.96 7.55 0.00 31.93 13.16 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 30.13 4.18 11.27 0.00 0.00 673.17 - 10.45 51.08 1952 0.00 0.00 0.00 593.51 7.58 0.00 32.47 11.33 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 30.28 4.18 9.44 0.00 0.00 688.79 - 10.45 51.08 1953 0.00 0.00 0.00 610.26 7.58 0.00 32.95 9.46 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 30.33 4.17 9.45 0.00 0.00 704.21 - 10.45 51.08 1954 0.00 0.00 0.00 601.52 7.63 0.00 33.68 9.53 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 30.57 4.18 9.53 0.00 0.00 696.64 - 10.45 51.08 1955 0.00 0.00 0.00 589.16 7.64 0.00 34.13 9.56 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 30.64 4.18 7.64 0.00 0.00 682.95 - 10.45 51.08 1956 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 - 10.45 51.08 1957 0.00 0.61 1.40 1.26 0.61 0.97 0.34 0.85 0.00 0.00 0.16 0.73 0.49 0.00 1.29 0.00 0.00 0.00 1.13 0.82 0.83 64.32 0.00 75.81 - 10.45 51.08 1958 0.00 1.27 3.65 3.69 1.62 2.45 0.91 2.26 0.00 0.00 0.33 1.52 0.98 0.00 3.37 0.00 0.00 0.00 2.97 2.20 2.19 128.86 0.00 158.26 - 10.45 51.08 1959 0.00 1.97 7.78 8.02 3.50 4.87 1.95 4.87 0.00 0.00 0.56 2.51 1.59 0.00 7.17 0.00 0.00 0.00 6.39 4.72 4.70 130.39 0.00 191.02 - 10.45 51.08 1960 0.00 2.68 14.44 14.60 6.52 8.57 3.66 9.11 0.00 0.00 0.82 3.60 2.40 0.00 12.95 0.00 0.00 0.00 11.96 8.31 8.79 69.27 0.00 177.67 - 10.45 51.08 1961 0.00 3.22 21.78 23.69 10.11 12.55 5.71 14.14 0.00 0.00 1.07 4.58 3.12 0.00 19.66 0.00 0.00 0.00 18.55 12.47 13.64 37.54 0.00 201.85 - 10.45 51.08 1962 0.00 3.49 29.18 32.41 13.89 16.01 7.95 19.47 0.00 0.00 1.26 5.23 3.61 0.00 26.74 0.00 0.00 0.00 25.55 17.09 18.79 0.00 0.00 220.64 - 10.45 51.08 1963 0.00 3.53 36.18 42.63 17.31 18.90 9.99 24.31 0.00 0.00 1.33 5.35 3.85 0.00 33.10 0.00 0.00 0.00 31.89 21.21 23.47 0.00 0.00 273.05 - 10.45 51.08 1964 0.00 3.42 40.62 52.03 20.16 20.38 11.79 28.38 0.00 0.00 1.34 5.16 3.92 0.00 37.89 0.00 0.00 0.00 37.23 24.48 27.40 0.00 0.00 314.19 - 10.45 51.08 1965 0.00 2.84 42.48 60.20 22.60 21.04 13.41 31.90 0.00 0.00 1.29 4.81 3.78 0.00 40.81 0.00 0.00 0.00 41.85 26.95 30.82 0.00 0.00 344.79 - 10.45 51.08 1966 0.00 2.19 44.72 66.71 24.39 21.26 14.69 34.53 0.00 0.00 1.22 4.39 3.66 0.00 43.30 0.00 0.00 0.00 45.30 28.52 32.31 0.00 0.00 367.19 - 10.45 51.08 1967 0.00 1.74 47.53 75.92 26.39 21.44 16.15 37.49 0.00 0.00 1.14 3.90 3.45 0.00 44.82 0.00 0.00 0.00 49.19 30.27 35.31 0.00 0.00 394.75 - 10.45 51.08 1968 0.00 1.15 42.92 84.39 27.96 21.00 17.39 38.66 0.00 0.00 1.08 3.43 3.27 0.00 43.64 0.00 0.00 0.00 52.33 30.48 37.35 0.00 0.00 405.04 - 10.45 51.08 1969 0.00 0.79 45.01 92.22 28.87 19.27 18.26 40.09 0.00 0.00 0.93 2.45 3.04 0.00 42.31 0.00 0.00 0.00 54.30 31.08 38.78 0.00 0.00 417.40 - 10.45 51.08 1970 0.00 0.52 43.49 99.78 29.73 17.96 19.08 41.30 0.00 0.00 0.76 1.77 2.69 0.00 39.56 0.00 0.00 0.00 55.79 31.04 40.03 0.00 0.00 423.49 - 10.45 51.08 1971 0.00 0.29 43.97 105.14 30.48 16.85 19.84 42.35 0.00 0.00 0.62 1.29 2.40 0.00 36.65 0.00 0.00 0.00 57.28 29.84 41.14 0.00 0.00 428.13 - 10.45 51.08 1972 0.00 0.00 43.34 105.06 28.91 13.00 20.07 42.38 0.00 0.00 0.49 1.24 1.96 0.00 31.90 0.00 0.00 0.00 56.00 29.37 41.18 0.00 0.00 414.91 - 10.45 51.08 1973 0.00 0.00 41.32 114.71 28.15 11.10 20.59 43.17 0.00 0.00 0.41 1.13 1.80 0.00 30.89 0.00 0.00 0.00 57.08 28.30 41.93 0.00 0.00 420.58 - 10.45 51.08 1974 0.00 0.00 38.39 116.22 26.74 7.27 20.71 41.74 0.00 0.00 0.33 0.98 1.63 0.00 25.32 0.00 0.00 0.00 54.24 24.90 41.86 0.00 0.00 400.35 - 10.45 51.08 1975 0.00 0.00 37.02 125.69 24.97 6.66 21.73 41.96 0.00 0.00 0.01 0.96 1.40 0.00 24.83 0.00 0.00 0.00 56.42 25.42 40.63 0.00 0.00 407.71 - 10.45 51.08 1976 0.00 0.00 34.10 138.37 25.86 6.10 22.79 43.48 0.00 0.00 0.01 0.93 1.26 0.00 24.12 0.00 0.00 0.00 56.96 24.65 40.64 0.00 0.00 419.27 - 10.45 51.08 1977 0.00 0.00 31.09 139.11 24.20 5.08 23.00 41.67 0.00 0.00 0.01 0.90 1.03 0.00 20.52 0.00 0.00 0.00 53.64 23.16 38.85 0.00 0.00 402.27 - 10.45 51.08 1978 0.00 0.00 26.47 149.14 24.59 3.41 23.68 42.50 0.00 0.00 0.01 0.89 0.92 0.00 17.49 0.00 0.00 0.00 54.70 22.16 39.62 0.00 0.00 405.59 - 10.45 51.08 1979 0.00 0.00 25.78 159.61 25.44 3.35 24.94 44.22 0.00 0.00 0.01 0.89 0.00 0.00 15.69 0.00 0.00 0.00 56.92 21.54 39.63 0.00 0.00 418.02 - 10.45 51.08 1980 0.00 0.00 22.35 173.44 24.53 2.92 26.08 45.47 0.00 0.00 0.01 0.88 0.00 0.00 15.79 0.00 0.00 0.00 56.90 19.67 40.75 0.00 0.00 428.77 - 10.45 51.08 1981 0.00 0.00 21.23 189.46 23.53 2.86 27.24 46.68 0.00 0.00 0.01 0.84 0.00 0.00 13.62 0.00 0.00 0.00 56.74 19.67 41.83 0.00 0.00 443.71 - 10.45 51.08 1982 0.00 0.00 18.90 207.18 24.08 2.46 28.50 46.24 0.00 0.00 0.01 0.84 0.00 0.00 13.67 0.00 0.00 0.00 56.57 19.76 42.97 0.00 0.00 461.18 - 10.45 51.08 1983 0.00 0.00 14.81 213.71 23.79 2.31 28.67 44.19 0.00 0.00 0.01 0.84 0.00 0.00 11.31 0.00 0.00 0.00 52.64 19.32 40.79 0.00 0.00 452.40 - 10.45 51.08 1984 0.00 0.00 13.44 225.03 23.84 0.00 29.19 44.50 0.00 0.00 0.00 0.84 0.00 0.00 10.18 0.00 0.00 0.00 53.01 19.01 39.37 0.00 0.00 458.42 - 10.45 51.08 1985 0.00 0.00 12.07 236.01 23.73 0.00 29.43 40.99 0.00 0.00 0.00 0.84 0.00 0.00 9.01 0.00 0.00 0.00 51.20 18.65 39.29 0.00 0.00 461.21 - 10.45 51.08 1986 0.00 0.00 10.94 254.31 24.30 0.00 30.82 40.39 0.00 0.00 0.00 0.84 0.00 0.00 7.04 0.00 0.00 0.00 50.89 17.74 40.40 0.00 0.00 477.67 - 10.45 51.08 1987 0.00 0.00 7.28 271.77 24.49 0.00 29.12 40.81 0.00 0.00 0.00 0.81 0.00 0.00 6.00 0.00 0.00 0.00 49.64 17.58 40.82 0.00 0.00 488.32 - 10.45 51.08 1988 0.00 0.00 7.26 282.01 24.66 0.00 30.26 39.46 0.00 0.00 0.00 0.81 0.00 0.00 5.96 0.00 0.00 0.00 50.19 17.46 41.26 0.00 0.00 499.32 - 10.45 51.08 1989 0.00 0.00 5.99 289.62 24.64 0.00 30.81 36.01 0.00 0.00 0.00 0.81 0.00 0.00 5.89 0.00 0.00 0.00 46.77 16.34 41.41 0.00 0.00 498.28 - 10.45 51.08 1990 0.00 0.00 5.91 302.43 22.82 0.00 31.04 35.88 0.00 0.00 0.00 0.81 0.00 0.00 5.81 0.00 0.00 0.00 46.61 16.09 41.27 0.00 0.00 508.68 - 10.45 51.08 1991 0.00 0.00 3.55 320.23 22.98 0.00 31.76 36.27 0.00 0.00 0.00 0.00 0.00 0.00 5.78 0.00 0.00 0.00 47.11 15.07 41.71 0.00 0.00 524.46 - 10.45 51.08 1992 0.00 0.00 2.33 331.66 21.02 0.00 31.51 33.98 0.00 0.00 0.00 0.00 0.00 0.00 2.85 0.00 0.00 0.00 46.47 14.83 41.14 0.00 0.00 525.81 - 10.45 51.08 1993 0.00 0.00 1.14 341.90 20.68 0.00 31.36 31.74 0.00 0.00 0.00 0.00 0.00 0.00 1.87 0.00 0.00 0.00 45.80 13.63 40.56 0.00 0.00 528.69 - 10.45 51.08 1994 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 - 10.45 51.08 1995 0.00 0.58 1.31 1.02 0.82 0.63 0.42 0.69 0.00 0.00 0.18 0.59 0.51 0.00 1.07 0.00 0.00 0.67 0.61 0.77 1.34 64.32 0.00 75.54 - 10.45 51.08 1996 0.00 1.20 3.42 2.78 2.28 1.52 1.17 1.87 0.00 0.00 0.37 1.21 1.00 0.00 2.81 0.00 0.00 1.78 1.64 2.07 3.52 134.40 0.00 163.02 - 10.45 51.08 1997 0.00 1.86 7.19 6.18 4.84 3.05 2.51 3.98 0.00 0.00 0.62 1.99 1.62 0.00 5.63 0.00 0.00 3.78 3.48 4.40 7.44 117.16 0.00 175.74 - 10.45 51.08 1998 0.00 2.63 13.03 11.81 8.86 5.25 4.62 7.28 0.00 0.00 0.96 3.05 2.50 0.00 10.19 0.00 0.00 6.90 6.36 7.90 13.59 84.86 0.00 189.78 - 10.45 51.08 1999 0.00 3.19 20.72 19.61 14.20 7.91 7.46 11.67 0.00 0.00 1.27 3.93 3.26 0.00 15.99 0.00 0.00 11.07 10.20 12.45 21.79 38.17 0.00 202.91 - 10.45 51.08 2000 0.00 3.48 29.55 28.89 20.37 10.42 10.81 16.79 0.00 0.00 1.51 4.57 3.82 0.00 22.74 0.00 0.00 15.93 14.67 17.20 31.38 0.00 0.00 232.13 - 10.45 51.08 2001 0.00 3.52 35.63 37.68 25.71 12.33 13.75 21.24 0.00 0.00 1.64 4.73 4.12 0.00 28.53 0.00 0.00 20.17 17.78 21.82 39.77 0.00 0.00 288.43 - 10.45 51.08 2002 0.00 3.36 40.70 46.14 29.95 13.59 16.21 24.92 0.00 0.00 1.60 4.40 4.06 0.00 32.90 0.00 0.00 23.67 21.05 25.09 46.73 0.00 0.00 334.36 - 10.45 51.08 2003 0.00 3.17 44.09 53.70 32.83 13.97 18.01 27.47 0.00 0.00 1.52 3.91 3.85 0.00 35.64 0.00 0.00 25.10 23.04 27.36 51.64 0.00 0.00 365.31 - 10.45 51.08 2004 0.00 2.87 46.13 59.66 34.75 13.75 19.32 28.14 0.00 0.00 1.47 3.49 3.70 0.00 36.17 0.00 0.00 26.95 24.54 28.51 55.08 0.00 0.00 384.53 - 10.45 51.08 2005 0.00 1.76 44.35 63.70 33.85 13.37 20.33 29.55 0.00 0.00 1.16 2.61 3.36 0.00 33.14 0.00 0.00 27.89 24.44 29.16 57.51 0.00 0.00 386.19 - 10.45 51.08 2006 0.00 1.16 44.38 71.31 35.93 12.04 21.60 31.02 0.00 0.00 1.02 1.95 3.08 0.00 33.62 0.00 0.00 29.42 24.78 29.98 59.50 0.00 0.00 400.79 - 10.45 51.08 2007 0.00 0.59 42.57 76.48 37.25 11.70 22.98 32.59 0.00 0.00 0.83 1.36 2.75 0.00 33.47 0.00 0.00 31.05 26.15 30.21 61.80 0.00 0.00 411.79 - 10.45 51.08 2008 0.00 0.40 43.71 87.00 39.07 11.42 24.60 35.15 0.00 0.00 0.77 1.11 2.31 0.00 28.29 0.00 0.00 33.28 28.05 30.76 66.78 0.00 0.00 432.70 - 10.45 51.08 2009 0.00 0.00 44.30 94.99 40.10 10.12 25.62 33.54 0.00 0.00 0.61 0.97 1.99 0.00 29.34 0.00 0.00 33.07 28.76 30.01 69.01 0.00 0.00 442.43 - 10.45 51.08 2010 0.00 0.00 44.39 102.49 40.45 8.32 26.21 33.05 0.00 0.00 0.46 0.84 1.73 0.00 29.27 0.00 0.00 33.83 29.20 29.96 68.60 0.00 0.00 448.79 - 10.45 51.08 2011 0.00 0.00 41.43 112.95 41.20 7.17 27.08 33.98 0.00 0.00 0.00 0.75 1.47 0.00 28.41 0.00 0.00 34.84 28.57 30.23 69.20 0.00 0.00 457.28 - 10.45 51.08 2012 0.00 0.00 38.56 121.56 39.57 6.13 28.17 35.14 0.00 0.00 0.00 0.67 1.21 0.00 28.78 0.00 0.00 36.10 29.83 30.29 70.28 0.00 0.00 466.28 diff --git a/rLPJGUESS/inst/extdata/outputsForTests/run_distinterval/outDirectory/npool.out b/rLPJGUESS/inst/extdata/outputsForTests/run_distinterval/outDirectory/npool.out deleted file mode 100644 index 210011e..0000000 --- a/rLPJGUESS/inst/extdata/outputsForTests/run_distinterval/outDirectory/npool.out +++ /dev/null @@ -1,63 +0,0 @@ - Lon Lat Year VegN LitterN SoilN Total - 10.45 51.08 1951 0.0673 0.0311 0.9456 1.0440 - 10.45 51.08 1952 0.0689 0.0302 0.9442 1.0434 - 10.45 51.08 1953 0.0704 0.0286 0.9435 1.0426 - 10.45 51.08 1954 0.0697 0.0306 0.9434 1.0436 - 10.45 51.08 1955 0.0683 0.0328 0.9439 1.0450 - 10.45 51.08 1956 0.0000 0.0903 0.9591 1.0493 - 10.45 51.08 1957 0.0076 0.0847 0.9592 1.0515 - 10.45 51.08 1958 0.0158 0.0800 0.9581 1.0539 - 10.45 51.08 1959 0.0191 0.0756 0.9636 1.0583 - 10.45 51.08 1960 0.0178 0.0734 0.9684 1.0596 - 10.45 51.08 1961 0.0202 0.0693 0.9705 1.0600 - 10.45 51.08 1962 0.0221 0.0669 0.9707 1.0597 - 10.45 51.08 1963 0.0273 0.0649 0.9711 1.0633 - 10.45 51.08 1964 0.0314 0.0623 0.9720 1.0657 - 10.45 51.08 1965 0.0345 0.0617 0.9739 1.0700 - 10.45 51.08 1966 0.0367 0.0608 0.9763 1.0738 - 10.45 51.08 1967 0.0395 0.0584 0.9773 1.0752 - 10.45 51.08 1968 0.0405 0.0574 0.9783 1.0762 - 10.45 51.08 1969 0.0417 0.0568 0.9803 1.0788 - 10.45 51.08 1970 0.0423 0.0563 0.9814 1.0800 - 10.45 51.08 1971 0.0428 0.0540 0.9820 1.0788 - 10.45 51.08 1972 0.0415 0.0555 0.9848 1.0818 - 10.45 51.08 1973 0.0421 0.0529 0.9843 1.0792 - 10.45 51.08 1974 0.0400 0.0529 0.9861 1.0790 - 10.45 51.08 1975 0.0408 0.0506 0.9852 1.0766 - 10.45 51.08 1976 0.0419 0.0486 0.9847 1.0753 - 10.45 51.08 1977 0.0402 0.0500 0.9871 1.0773 - 10.45 51.08 1978 0.0406 0.0484 0.9869 1.0758 - 10.45 51.08 1979 0.0418 0.0471 0.9856 1.0744 - 10.45 51.08 1980 0.0429 0.0460 0.9850 1.0738 - 10.45 51.08 1981 0.0444 0.0458 0.9854 1.0756 - 10.45 51.08 1982 0.0461 0.0430 0.9839 1.0731 - 10.45 51.08 1983 0.0452 0.0421 0.9847 1.0721 - 10.45 51.08 1984 0.0458 0.0432 0.9856 1.0747 - 10.45 51.08 1985 0.0461 0.0411 0.9842 1.0715 - 10.45 51.08 1986 0.0478 0.0405 0.9830 1.0712 - 10.45 51.08 1987 0.0488 0.0416 0.9838 1.0742 - 10.45 51.08 1988 0.0499 0.0393 0.9824 1.0717 - 10.45 51.08 1989 0.0498 0.0384 0.9816 1.0698 - 10.45 51.08 1990 0.0509 0.0369 0.9811 1.0689 - 10.45 51.08 1991 0.0524 0.0357 0.9797 1.0679 - 10.45 51.08 1992 0.0526 0.0348 0.9787 1.0661 - 10.45 51.08 1993 0.0529 0.0352 0.9787 1.0668 - 10.45 51.08 1994 0.0000 0.0739 0.9961 1.0699 - 10.45 51.08 1995 0.0076 0.0688 0.9941 1.0704 - 10.45 51.08 1996 0.0163 0.0662 0.9901 1.0726 - 10.45 51.08 1997 0.0176 0.0628 0.9945 1.0749 - 10.45 51.08 1998 0.0190 0.0597 0.9962 1.0749 - 10.45 51.08 1999 0.0203 0.0569 0.9973 1.0744 - 10.45 51.08 2000 0.0232 0.0537 0.9952 1.0721 - 10.45 51.08 2001 0.0288 0.0518 0.9948 1.0754 - 10.45 51.08 2002 0.0334 0.0515 0.9961 1.0810 - 10.45 51.08 2003 0.0365 0.0485 0.9960 1.0810 - 10.45 51.08 2004 0.0385 0.0474 0.9969 1.0827 - 10.45 51.08 2005 0.0386 0.0460 0.9977 1.0822 - 10.45 51.08 2006 0.0401 0.0441 0.9975 1.0818 - 10.45 51.08 2007 0.0412 0.0441 0.9983 1.0836 - 10.45 51.08 2008 0.0433 0.0426 0.9973 1.0831 - 10.45 51.08 2009 0.0442 0.0417 0.9974 1.0833 - 10.45 51.08 2010 0.0449 0.0423 0.9984 1.0856 - 10.45 51.08 2011 0.0457 0.0399 0.9971 1.0828 - 10.45 51.08 2012 0.0466 0.0389 0.9966 1.0821 diff --git a/rLPJGUESS/inst/extdata/outputsForTests/run_distinterval/outDirectory/nsources.out b/rLPJGUESS/inst/extdata/outputsForTests/run_distinterval/outDirectory/nsources.out deleted file mode 100644 index 8a392f0..0000000 --- a/rLPJGUESS/inst/extdata/outputsForTests/run_distinterval/outDirectory/nsources.out +++ /dev/null @@ -1,63 +0,0 @@ - Lon Lat Year dep fix fert input min imm netmin Total - 10.45 51.08 1951 11.23 2.49 0.00 13.72 136.88 45.48 91.39 105.11 - 10.45 51.08 1952 11.23 2.32 0.00 13.55 146.11 35.78 110.33 123.88 - 10.45 51.08 1953 11.23 2.44 0.00 13.67 164.16 53.16 111.00 124.67 - 10.45 51.08 1954 11.23 2.88 0.00 14.11 132.81 38.97 93.84 107.95 - 10.45 51.08 1955 11.23 2.75 0.00 13.98 120.71 37.24 83.47 97.46 - 10.45 51.08 1956 11.23 0.00 0.00 11.23 117.95 161.54 -43.59 -32.36 - 10.45 51.08 1957 11.23 2.93 0.00 14.16 128.77 76.14 52.63 66.79 - 10.45 51.08 1958 11.23 2.65 0.00 13.88 178.07 73.67 104.40 118.28 - 10.45 51.08 1959 11.23 2.66 0.00 13.90 178.04 100.09 77.94 91.84 - 10.45 51.08 1960 14.10 2.85 0.00 16.95 162.83 80.19 82.65 99.60 - 10.45 51.08 1961 14.10 2.71 0.00 16.81 180.24 84.89 95.36 112.17 - 10.45 51.08 1962 14.10 2.86 0.00 16.96 166.39 45.16 121.23 138.19 - 10.45 51.08 1963 14.10 2.61 0.00 16.71 149.12 46.55 102.57 119.28 - 10.45 51.08 1964 14.10 2.27 0.00 16.37 178.47 53.96 124.52 140.89 - 10.45 51.08 1965 14.10 3.28 0.00 17.38 158.22 46.85 111.38 128.76 - 10.45 51.08 1966 14.10 3.34 0.00 17.44 171.98 51.73 120.26 137.69 - 10.45 51.08 1967 14.10 3.44 0.00 17.54 213.51 61.54 151.97 169.51 - 10.45 51.08 1968 14.10 3.24 0.00 17.34 202.94 50.99 151.95 169.29 - 10.45 51.08 1969 14.10 2.77 0.00 16.87 180.63 47.19 133.45 150.31 - 10.45 51.08 1970 16.97 2.84 0.00 19.81 186.69 41.35 145.34 165.15 - 10.45 51.08 1971 16.97 2.89 0.00 19.85 223.60 58.27 165.33 185.18 - 10.45 51.08 1972 16.97 2.82 0.00 19.79 161.35 49.61 111.74 131.53 - 10.45 51.08 1973 16.97 2.59 0.00 19.56 221.38 51.75 169.64 189.20 - 10.45 51.08 1974 16.97 2.77 0.00 19.74 188.86 57.80 131.06 150.79 - 10.45 51.08 1975 16.97 2.46 0.00 19.43 224.86 62.24 162.62 182.05 - 10.45 51.08 1976 16.97 2.52 0.00 19.49 209.86 60.56 149.30 168.79 - 10.45 51.08 1977 16.97 2.50 0.00 19.47 149.55 50.34 99.21 118.68 - 10.45 51.08 1978 16.97 3.07 0.00 20.04 191.25 51.68 139.57 159.61 - 10.45 51.08 1979 16.97 2.78 0.00 19.75 191.89 46.94 144.95 164.69 - 10.45 51.08 1980 17.99 2.86 0.00 20.85 183.21 48.75 134.46 155.31 - 10.45 51.08 1981 17.99 2.79 0.00 20.78 160.78 42.51 118.27 139.05 - 10.45 51.08 1982 17.99 2.35 0.00 20.35 225.46 63.52 161.94 182.29 - 10.45 51.08 1983 17.99 1.97 0.00 19.96 196.60 68.91 127.69 147.65 - 10.45 51.08 1984 17.99 2.64 0.00 20.64 143.21 41.67 101.53 122.17 - 10.45 51.08 1985 17.99 2.63 0.00 20.62 202.80 52.05 150.75 171.37 - 10.45 51.08 1986 17.99 2.21 0.00 20.21 174.43 42.49 131.94 152.15 - 10.45 51.08 1987 17.99 3.00 0.00 21.00 134.09 33.78 100.31 121.31 - 10.45 51.08 1988 17.99 2.46 0.00 20.46 210.43 56.81 153.63 174.08 - 10.45 51.08 1989 17.99 2.45 0.00 20.44 205.87 65.69 140.18 160.63 - 10.45 51.08 1990 19.66 2.53 0.00 22.19 193.54 64.75 128.79 150.98 - 10.45 51.08 1991 19.66 2.76 0.00 22.41 194.71 57.19 137.52 159.94 - 10.45 51.08 1992 19.66 1.82 0.00 21.47 194.93 61.02 133.92 155.39 - 10.45 51.08 1993 19.66 2.25 0.00 21.90 150.77 42.46 108.31 130.21 - 10.45 51.08 1994 19.66 0.00 0.00 19.66 184.55 216.46 -31.92 -12.26 - 10.45 51.08 1995 19.66 2.50 0.00 22.16 146.04 76.01 70.02 92.18 - 10.45 51.08 1996 19.66 2.21 0.00 21.86 159.48 45.49 113.99 135.85 - 10.45 51.08 1997 19.66 2.70 0.00 22.36 180.27 96.67 83.59 105.95 - 10.45 51.08 1998 19.66 2.87 0.00 22.52 190.53 80.71 109.82 132.35 - 10.45 51.08 1999 19.66 2.47 0.00 22.13 191.70 83.21 108.50 130.62 - 10.45 51.08 2000 21.34 2.43 0.00 23.77 208.93 55.50 153.43 177.20 - 10.45 51.08 2001 21.34 2.85 0.00 24.19 172.75 57.64 115.11 139.30 - 10.45 51.08 2002 21.34 3.01 0.00 24.35 157.59 52.02 105.57 129.92 - 10.45 51.08 2003 21.34 2.45 0.00 23.79 233.90 71.86 162.05 185.84 - 10.45 51.08 2004 21.34 3.03 0.00 24.37 207.87 64.15 143.72 168.08 - 10.45 51.08 2005 21.34 2.60 0.00 23.94 230.76 70.50 160.27 184.21 - 10.45 51.08 2006 21.34 2.41 0.00 23.75 235.76 70.36 165.40 189.16 - 10.45 51.08 2007 21.34 2.43 0.00 23.77 208.78 64.22 144.57 168.34 - 10.45 51.08 2008 21.34 2.97 0.00 24.31 239.97 64.09 175.88 200.19 - 10.45 51.08 2009 21.34 2.35 0.00 23.69 219.95 60.05 159.90 183.59 - 10.45 51.08 2010 20.03 2.70 0.00 22.73 182.67 44.56 138.11 160.84 - 10.45 51.08 2011 20.03 2.86 0.00 22.88 250.92 63.68 187.24 210.13 - 10.45 51.08 2012 20.03 2.72 0.00 22.75 238.02 69.53 168.49 191.24 diff --git a/rLPJGUESS/inst/extdata/outputsForTests/run_distinterval/outDirectory/nuptake.out b/rLPJGUESS/inst/extdata/outputsForTests/run_distinterval/outDirectory/nuptake.out deleted file mode 100644 index 9c302c7..0000000 --- a/rLPJGUESS/inst/extdata/outputsForTests/run_distinterval/outDirectory/nuptake.out +++ /dev/null @@ -1,63 +0,0 @@ - Lon Lat Year Abi_alb BES Bet_pen Bet_pub Car_bet Cor_ave Fag_syl Fra_exc Jun_oxy MRS Pic_abi Pic_sit Pin_syl Pin_hal Pop_tre Que_coc Que_ile Que_pub Que_rob Til_cor Ulm_gla C3_gr C4_gr Total - 10.45 51.08 1951 0.00 0.00 0.00 89.22 0.76 0.00 7.08 1.55 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.54 0.24 1.33 0.00 0.00 103.72 - 10.45 51.08 1952 0.00 0.00 0.00 92.15 0.76 0.00 7.21 1.33 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.54 0.24 1.11 0.00 0.00 106.35 - 10.45 51.08 1953 0.00 0.00 0.00 91.64 0.72 0.00 7.18 1.06 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.38 0.23 1.06 0.00 0.00 105.27 - 10.45 51.08 1954 0.00 0.00 0.00 91.22 0.75 0.00 7.49 1.09 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.49 0.23 1.09 0.00 0.00 105.35 - 10.45 51.08 1955 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 - 10.45 51.08 1956 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 - 10.45 51.08 1957 0.00 0.61 1.40 1.26 0.61 0.97 0.34 0.85 0.00 0.00 0.16 0.73 0.49 0.00 1.29 0.00 0.00 0.00 1.13 0.82 0.83 64.33 0.00 75.82 - 10.45 51.08 1958 0.00 0.79 3.06 3.16 1.37 1.98 0.76 1.90 0.00 0.00 0.25 1.09 0.73 0.00 2.83 0.00 0.00 0.00 2.49 1.85 1.85 107.31 0.00 131.42 - 10.45 51.08 1959 0.00 1.10 6.05 6.27 2.73 3.58 1.52 3.79 0.00 0.00 0.37 1.62 1.08 0.00 5.57 0.00 0.00 0.00 4.98 3.68 3.66 82.44 0.00 128.43 - 10.45 51.08 1960 0.00 1.31 10.30 10.51 4.67 5.74 2.62 6.52 0.00 0.00 0.50 2.10 1.54 0.00 9.13 0.00 0.00 0.00 8.56 5.80 6.29 23.59 0.00 99.17 - 10.45 51.08 1961 0.00 1.38 13.73 14.96 6.41 7.34 3.63 8.96 0.00 0.00 0.60 2.46 1.80 0.00 12.38 0.00 0.00 0.00 11.75 7.89 8.63 0.00 0.00 101.90 - 10.45 51.08 1962 0.00 1.28 16.45 18.43 7.93 8.54 4.56 11.11 0.00 0.00 0.63 2.46 1.85 0.00 15.16 0.00 0.00 0.00 14.58 9.82 10.71 0.00 0.00 123.50 - 10.45 51.08 1963 0.00 1.13 18.70 22.99 9.10 9.26 5.31 12.79 0.00 0.00 0.59 2.17 1.79 0.00 17.14 0.00 0.00 0.00 16.77 11.12 12.34 0.00 0.00 141.21 - 10.45 51.08 1964 0.00 1.00 19.78 26.33 10.04 9.33 5.97 14.14 0.00 0.00 0.55 1.90 1.71 0.00 18.40 0.00 0.00 0.00 18.54 12.15 13.65 0.00 0.00 153.50 - 10.45 51.08 1965 0.00 0.78 19.44 28.44 10.64 8.88 6.46 15.03 0.00 0.00 0.50 1.65 1.50 0.00 18.63 0.00 0.00 0.00 19.72 12.53 14.52 0.00 0.00 158.74 - 10.45 51.08 1966 0.00 0.57 19.07 30.07 10.86 8.39 6.74 15.41 0.00 0.00 0.45 1.44 1.44 0.00 18.48 0.00 0.00 0.00 20.21 12.56 14.41 0.00 0.00 160.09 - 10.45 51.08 1967 0.00 0.40 20.14 33.50 11.68 8.23 7.40 16.62 0.00 0.00 0.41 1.15 1.26 0.00 19.01 0.00 0.00 0.00 21.81 13.24 15.56 0.00 0.00 170.41 - 10.45 51.08 1968 0.00 0.25 17.29 35.78 11.72 7.44 7.61 16.18 0.00 0.00 0.38 0.96 1.16 0.00 17.26 0.00 0.00 0.00 22.05 12.65 15.74 0.00 0.00 166.48 - 10.45 51.08 1969 0.00 0.15 16.61 37.11 11.56 6.32 7.66 15.98 0.00 0.00 0.27 0.41 1.01 0.00 15.75 0.00 0.00 0.00 21.66 12.16 15.55 0.00 0.00 162.20 - 10.45 51.08 1970 0.00 0.07 15.62 39.22 11.67 5.58 7.90 16.17 0.00 0.00 0.18 0.16 0.82 0.00 14.20 0.00 0.00 0.00 21.91 11.71 15.74 0.00 0.00 160.96 - 10.45 51.08 1971 0.00 0.00 15.13 40.35 11.56 4.91 8.05 16.17 0.00 0.00 0.12 0.02 0.68 0.00 12.63 0.00 0.00 0.00 21.91 10.93 15.73 0.00 0.00 158.20 - 10.45 51.08 1972 0.00 0.00 13.57 37.04 10.28 3.50 7.65 15.09 0.00 0.00 0.06 0.08 0.48 0.00 10.03 0.00 0.00 0.00 19.96 10.05 14.65 0.00 0.00 142.44 - 10.45 51.08 1973 0.00 0.00 13.10 42.55 10.17 2.66 8.10 15.69 0.00 0.00 0.04 0.04 0.43 0.00 9.72 0.00 0.00 0.00 20.75 9.65 15.23 0.00 0.00 148.12 - 10.45 51.08 1974 0.00 0.00 11.10 39.24 8.94 1.59 7.62 14.02 0.00 0.00 0.00 0.00 0.31 0.00 7.20 0.00 0.00 0.00 18.23 7.83 14.04 0.00 0.00 130.14 - 10.45 51.08 1975 0.00 0.00 11.27 46.27 8.84 1.35 8.54 14.96 0.00 0.00 0.00 0.01 0.25 0.00 7.44 0.00 0.00 0.00 20.12 8.36 14.45 0.00 0.00 141.86 - 10.45 51.08 1976 0.00 0.00 9.95 48.44 8.79 1.14 8.71 15.10 0.00 0.00 0.00 0.01 0.20 0.00 6.89 0.00 0.00 0.00 19.78 7.73 14.05 0.00 0.00 140.78 - 10.45 51.08 1977 0.00 0.00 7.98 43.27 7.47 0.80 8.09 13.08 0.00 0.00 0.00 0.00 0.05 0.00 5.16 0.00 0.00 0.00 16.81 6.61 12.14 0.00 0.00 121.48 - 10.45 51.08 1978 0.00 0.00 6.91 49.10 7.81 0.46 8.67 13.80 0.00 0.00 0.00 0.00 0.00 0.00 4.44 0.00 0.00 0.00 17.75 6.33 12.82 0.00 0.00 128.07 - 10.45 51.08 1979 0.00 0.00 6.66 54.10 8.09 0.42 9.24 14.44 0.00 0.00 0.00 0.00 0.00 0.00 3.94 0.00 0.00 0.00 18.57 6.15 12.89 0.00 0.00 134.51 - 10.45 51.08 1980 0.00 0.00 5.53 54.89 7.58 0.32 9.42 14.40 0.00 0.00 0.00 0.00 0.00 0.00 3.76 0.00 0.00 0.00 18.00 5.42 12.86 0.00 0.00 132.18 - 10.45 51.08 1981 0.00 0.00 5.00 60.81 7.11 0.27 9.67 14.48 0.00 0.00 0.00 0.00 0.00 0.00 3.02 0.00 0.00 0.00 17.59 5.15 12.93 0.00 0.00 136.03 - 10.45 51.08 1982 0.00 0.00 4.37 66.21 7.23 0.20 10.13 14.27 0.00 0.00 0.00 0.00 0.00 0.00 2.99 0.00 0.00 0.00 17.44 5.13 13.21 0.00 0.00 141.19 - 10.45 51.08 1983 0.00 0.00 2.97 58.53 6.40 0.00 9.28 12.17 0.00 0.00 0.00 0.00 0.00 0.00 2.15 0.00 0.00 0.00 14.51 4.47 11.23 0.00 0.00 121.71 - 10.45 51.08 1984 0.00 0.00 2.58 65.15 6.38 0.00 9.63 12.33 0.00 0.00 0.00 0.00 0.00 0.00 1.84 0.00 0.00 0.00 14.70 4.13 10.90 0.00 0.00 127.64 - 10.45 51.08 1985 0.00 0.00 2.15 65.84 6.03 0.00 9.39 10.78 0.00 0.00 0.00 0.00 0.00 0.00 1.49 0.00 0.00 0.00 13.47 3.78 10.33 0.00 0.00 123.25 - 10.45 51.08 1986 0.00 0.00 1.97 73.41 6.38 0.00 10.28 10.98 0.00 0.00 0.00 0.00 0.00 0.00 1.18 0.00 0.00 0.00 13.85 3.65 10.98 0.00 0.00 132.69 - 10.45 51.08 1987 0.00 0.00 1.23 75.41 6.13 0.00 9.38 10.60 0.00 0.00 0.00 0.00 0.00 0.00 0.92 0.00 0.00 0.00 12.90 3.38 10.60 0.00 0.00 130.55 - 10.45 51.08 1988 0.00 0.00 1.17 78.25 6.00 0.00 9.56 9.99 0.00 0.00 0.00 0.00 0.00 0.00 0.86 0.00 0.00 0.00 12.72 3.22 10.45 0.00 0.00 132.22 - 10.45 51.08 1989 0.00 0.00 0.87 75.51 5.67 0.00 9.44 8.69 0.00 0.00 0.00 0.00 0.00 0.00 0.77 0.00 0.00 0.00 11.30 2.84 9.99 0.00 0.00 125.09 - 10.45 51.08 1990 0.00 0.00 0.80 75.72 5.00 0.00 9.26 8.29 0.00 0.00 0.00 0.00 0.00 0.00 0.70 0.00 0.00 0.00 10.78 2.59 9.54 0.00 0.00 122.67 - 10.45 51.08 1991 0.00 0.00 0.48 83.32 5.10 0.00 9.69 8.50 0.00 0.00 0.00 0.00 0.00 0.00 0.68 0.00 0.00 0.00 11.06 2.39 9.78 0.00 0.00 131.01 - 10.45 51.08 1992 0.00 0.00 0.27 78.38 4.17 0.00 8.77 7.11 0.00 0.00 0.00 0.00 0.00 0.00 0.29 0.00 0.00 0.00 9.72 2.10 8.60 0.00 0.00 119.41 - 10.45 51.08 1993 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 - 10.45 51.08 1994 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 - 10.45 51.08 1995 0.00 0.58 1.31 1.02 0.82 0.63 0.42 0.69 0.00 0.00 0.18 0.59 0.51 0.00 1.07 0.00 0.00 0.67 0.61 0.77 1.34 64.33 0.00 75.55 - 10.45 51.08 1996 0.00 0.75 2.86 2.34 1.93 1.21 0.99 1.58 0.00 0.00 0.27 0.87 0.74 0.00 2.36 0.00 0.00 1.50 1.38 1.74 2.95 112.80 0.00 136.26 - 10.45 51.08 1997 0.00 1.03 5.56 4.83 3.76 2.24 1.95 3.08 0.00 0.00 0.41 1.28 1.10 0.00 4.35 0.00 0.00 2.92 2.69 3.42 5.76 66.92 0.00 111.33 - 10.45 51.08 1998 0.00 1.34 9.22 8.44 6.31 3.48 3.30 5.18 0.00 0.00 0.61 1.86 1.62 0.00 7.15 0.00 0.00 4.90 4.52 5.57 9.64 40.75 0.00 113.88 - 10.45 51.08 1999 0.00 1.36 13.29 12.64 9.19 4.72 4.85 7.53 0.00 0.00 0.71 2.10 1.88 0.00 10.24 0.00 0.00 7.13 6.57 8.01 14.03 0.00 0.00 104.26 - 10.45 51.08 2000 0.00 1.28 17.23 16.96 11.99 5.69 6.41 9.87 0.00 0.00 0.77 2.19 1.98 0.00 13.27 0.00 0.00 9.35 8.62 10.13 18.42 0.00 0.00 134.15 - 10.45 51.08 2001 0.00 1.13 18.67 20.15 13.68 6.06 7.41 11.29 0.00 0.00 0.74 1.95 1.94 0.00 14.94 0.00 0.00 10.71 9.44 11.50 21.11 0.00 0.00 150.73 - 10.45 51.08 2002 0.00 0.94 19.56 23.09 14.78 6.15 8.15 12.34 0.00 0.00 0.63 1.52 1.68 0.00 15.91 0.00 0.00 11.72 10.33 12.32 23.13 0.00 0.00 162.25 - 10.45 51.08 2003 0.00 0.82 19.70 25.23 15.13 5.76 8.51 12.68 0.00 0.00 0.57 1.29 1.49 0.00 15.96 0.00 0.00 11.58 10.63 12.57 23.82 0.00 0.00 165.71 - 10.45 51.08 2004 0.00 0.73 19.52 26.05 15.17 5.24 8.69 12.31 0.00 0.00 0.56 1.13 1.40 0.00 15.17 0.00 0.00 11.69 10.73 12.19 24.09 0.00 0.00 164.66 - 10.45 51.08 2005 0.00 0.38 17.94 27.12 14.24 4.84 8.88 12.35 0.00 0.00 0.37 0.50 1.18 0.00 13.26 0.00 0.00 11.75 10.29 12.16 24.23 0.00 0.00 159.49 - 10.45 51.08 2006 0.00 0.19 17.57 30.18 14.91 4.18 9.45 13.02 0.00 0.00 0.31 0.32 1.02 0.00 12.99 0.00 0.00 12.41 10.36 12.48 25.12 0.00 0.00 164.51 - 10.45 51.08 2007 0.00 0.06 16.34 31.37 15.14 3.86 9.84 13.36 0.00 0.00 0.19 0.11 0.87 0.00 12.73 0.00 0.00 12.65 10.64 12.32 25.30 0.00 0.00 164.78 - 10.45 51.08 2008 0.00 0.00 16.75 36.03 15.81 3.62 10.54 14.67 0.00 0.00 0.22 0.08 0.71 0.00 10.79 0.00 0.00 13.92 11.60 12.35 27.84 0.00 0.00 174.92 - 10.45 51.08 2009 0.00 0.00 15.65 36.57 15.18 2.97 10.30 12.78 0.00 0.00 0.09 0.08 0.50 0.00 9.96 0.00 0.00 12.63 10.98 11.11 26.36 0.00 0.00 165.16 - 10.45 51.08 2010 0.00 0.00 14.93 38.17 14.72 2.16 10.23 11.96 0.00 0.00 0.00 0.05 0.35 0.00 9.45 0.00 0.00 12.38 10.76 10.70 25.29 0.00 0.00 161.13 - 10.45 51.08 2011 0.00 0.00 13.76 42.86 14.98 1.72 10.64 12.31 0.00 0.00 0.00 0.03 0.18 0.00 9.03 0.00 0.00 12.77 10.55 10.61 25.53 0.00 0.00 164.99 - 10.45 51.08 2012 0.00 0.00 12.48 45.15 14.15 1.36 11.03 12.56 0.00 0.00 0.00 0.01 0.00 0.00 8.85 0.00 0.00 13.07 10.80 10.34 25.57 0.00 0.00 165.37 diff --git a/rLPJGUESS/inst/extdata/outputsForTests/run_distinterval/outDirectory/runoff.out b/rLPJGUESS/inst/extdata/outputsForTests/run_distinterval/outDirectory/runoff.out deleted file mode 100644 index b7f4fd8..0000000 --- a/rLPJGUESS/inst/extdata/outputsForTests/run_distinterval/outDirectory/runoff.out +++ /dev/null @@ -1,63 +0,0 @@ - Lon Lat Year Surf Drain Base Total - 10.45 51.08 1951 77.0 0.0 2.6 79.6 - 10.45 51.08 1952 152.4 34.3 13.6 200.3 - 10.45 51.08 1953 28.2 51.5 1.3 81.0 - 10.45 51.08 1954 18.9 0.0 0.6 19.6 - 10.45 51.08 1955 62.6 51.9 10.9 125.5 - 10.45 51.08 1956 116.6 236.2 18.5 371.3 - 10.45 51.08 1957 54.8 260.1 5.6 320.4 - 10.45 51.08 1958 92.5 168.5 7.0 268.0 - 10.45 51.08 1959 0.0 27.6 0.0 27.6 - 10.45 51.08 1960 70.2 59.3 2.0 131.5 - 10.45 51.08 1961 82.2 141.8 9.5 233.5 - 10.45 51.08 1962 3.5 36.3 2.6 42.4 - 10.45 51.08 1963 4.1 0.0 1.9 6.0 - 10.45 51.08 1964 24.7 0.0 0.0 24.7 - 10.45 51.08 1965 14.4 0.0 0.8 15.2 - 10.45 51.08 1966 77.4 0.0 2.8 80.2 - 10.45 51.08 1967 0.3 29.0 0.2 29.5 - 10.45 51.08 1968 14.8 0.0 1.0 15.8 - 10.45 51.08 1969 45.3 0.0 3.2 48.4 - 10.45 51.08 1970 30.3 0.0 1.7 32.0 - 10.45 51.08 1971 0.0 0.0 0.0 0.0 - 10.45 51.08 1972 47.8 0.0 0.2 48.0 - 10.45 51.08 1973 2.8 0.0 0.5 3.3 - 10.45 51.08 1974 19.6 0.0 1.3 20.9 - 10.45 51.08 1975 0.0 9.3 0.0 9.3 - 10.45 51.08 1976 1.1 0.0 0.1 1.2 - 10.45 51.08 1977 87.8 0.0 1.7 89.5 - 10.45 51.08 1978 0.0 16.7 0.0 16.7 - 10.45 51.08 1979 50.7 10.3 3.2 64.1 - 10.45 51.08 1980 0.0 0.0 0.0 0.0 - 10.45 51.08 1981 57.3 0.0 2.3 59.7 - 10.45 51.08 1982 11.8 0.0 1.1 12.8 - 10.45 51.08 1983 50.6 0.0 1.9 52.5 - 10.45 51.08 1984 53.8 0.0 6.1 60.0 - 10.45 51.08 1985 2.6 2.7 0.6 6.0 - 10.45 51.08 1986 25.3 0.0 2.6 27.9 - 10.45 51.08 1987 113.1 10.3 6.9 130.3 - 10.45 51.08 1988 21.9 87.8 4.2 113.8 - 10.45 51.08 1989 6.4 0.0 0.3 6.7 - 10.45 51.08 1990 2.7 0.0 0.4 3.1 - 10.45 51.08 1991 1.4 0.0 0.0 1.4 - 10.45 51.08 1992 49.4 0.0 1.2 50.6 - 10.45 51.08 1993 48.6 0.0 2.1 50.8 - 10.45 51.08 1994 55.1 185.1 5.5 245.7 - 10.45 51.08 1995 99.7 254.9 8.7 363.3 - 10.45 51.08 1996 31.9 152.7 2.0 186.6 - 10.45 51.08 1997 24.9 95.0 4.7 124.5 - 10.45 51.08 1998 45.9 105.3 1.8 153.0 - 10.45 51.08 1999 14.2 58.9 2.7 75.8 - 10.45 51.08 2000 10.9 92.5 1.9 105.4 - 10.45 51.08 2001 22.6 16.0 5.0 43.6 - 10.45 51.08 2002 124.5 124.6 4.1 253.1 - 10.45 51.08 2003 6.9 38.0 0.7 45.6 - 10.45 51.08 2004 54.8 0.0 0.8 55.6 - 10.45 51.08 2005 2.0 0.0 0.7 2.7 - 10.45 51.08 2006 3.4 0.0 0.1 3.5 - 10.45 51.08 2007 109.2 0.0 0.2 109.4 - 10.45 51.08 2008 8.5 2.6 0.7 11.8 - 10.45 51.08 2009 36.3 0.0 1.4 37.7 - 10.45 51.08 2010 113.5 0.0 3.6 117.1 - 10.45 51.08 2011 63.6 20.8 1.0 85.4 - 10.45 51.08 2012 3.9 0.0 0.1 4.0 diff --git a/rLPJGUESS/inst/extdata/outputsForTests/run_distinterval/outDirectory/speciesheight.out b/rLPJGUESS/inst/extdata/outputsForTests/run_distinterval/outDirectory/speciesheight.out deleted file mode 100644 index 9c1acd9..0000000 --- a/rLPJGUESS/inst/extdata/outputsForTests/run_distinterval/outDirectory/speciesheight.out +++ /dev/null @@ -1,63 +0,0 @@ - Lon Lat Year Abi_alb BES Bet_pen Bet_pub Car_bet Cor_ave Fag_syl Fra_exc Jun_oxy MRS Pic_abi Pic_sit Pin_syl Pin_hal Pop_tre Que_coc Que_ile Que_pub Que_rob Til_cor Ulm_gla C3_gr C4_gr - 10.45 51.08 1951 0.00 0.00 0.00 19.32 9.22 0.00 11.12 9.76 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 9.76 7.88 9.76 0.00 0.00 - 10.45 51.08 1952 0.00 0.00 0.00 19.48 9.23 0.00 11.17 9.78 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 9.78 7.89 9.78 0.00 0.00 - 10.45 51.08 1953 0.00 0.00 0.00 19.66 9.25 0.00 11.25 9.80 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 9.80 7.89 9.80 0.00 0.00 - 10.45 51.08 1954 0.00 0.00 0.00 19.81 9.26 0.00 11.30 9.82 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 9.82 7.90 9.82 0.00 0.00 - 10.45 51.08 1955 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 - 10.45 51.08 1956 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 - 10.45 51.08 1957 0.00 0.60 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 - 10.45 51.08 1958 0.00 0.69 3.83 4.02 3.82 0.00 3.82 3.83 0.00 0.00 0.00 0.00 0.00 0.00 3.83 0.00 0.00 0.00 3.83 3.82 3.83 0.00 0.00 - 10.45 51.08 1959 0.00 0.75 4.59 4.88 4.58 4.37 4.58 4.60 0.00 0.00 0.00 0.00 0.00 0.00 4.54 0.00 0.00 0.00 4.60 4.47 4.60 0.00 0.00 - 10.45 51.08 1960 0.00 0.80 5.19 5.38 5.16 4.88 5.22 5.19 0.00 0.00 3.84 0.00 4.10 0.00 5.13 0.00 0.00 0.00 5.20 5.00 5.19 0.00 0.00 - 10.45 51.08 1961 0.00 0.82 5.71 6.01 5.68 5.25 5.75 5.72 0.00 0.00 4.07 0.00 4.32 0.00 5.64 0.00 0.00 0.00 5.73 5.50 5.72 0.00 0.00 - 10.45 51.08 1962 0.00 0.83 6.08 6.48 6.04 5.52 6.13 6.09 0.00 0.00 4.17 3.89 4.45 0.00 6.00 0.00 0.00 0.00 6.10 5.84 6.09 0.00 0.00 - 10.45 51.08 1963 0.00 0.83 6.39 6.92 6.37 5.72 6.48 6.42 0.00 0.00 4.23 3.93 4.53 0.00 6.30 0.00 0.00 0.00 6.43 6.13 6.42 0.00 0.00 - 10.45 51.08 1964 0.00 0.83 6.62 7.30 6.61 5.83 6.73 6.67 0.00 0.00 4.23 3.93 4.54 0.00 6.52 0.00 0.00 0.00 6.68 6.32 6.67 0.00 0.00 - 10.45 51.08 1965 0.00 0.83 6.82 7.63 6.82 5.92 6.96 6.89 0.00 0.00 4.23 3.93 4.58 0.00 6.70 0.00 0.00 0.00 6.90 6.50 6.88 0.00 0.00 - 10.45 51.08 1966 0.00 0.83 7.03 7.96 7.03 5.99 7.20 7.11 0.00 0.00 4.23 3.93 4.58 0.00 6.89 0.00 0.00 0.00 7.12 6.67 7.10 0.00 0.00 - 10.45 51.08 1967 0.00 0.83 7.18 8.26 7.19 6.00 7.39 7.28 0.00 0.00 4.23 3.93 4.58 0.00 7.02 0.00 0.00 0.00 7.30 6.78 7.28 0.00 0.00 - 10.45 51.08 1968 0.00 0.83 7.28 8.49 7.30 6.00 7.51 7.48 0.00 0.00 4.23 3.93 4.58 0.00 7.16 0.00 0.00 0.00 7.42 6.85 7.39 0.00 0.00 - 10.45 51.08 1969 0.00 0.83 7.39 8.82 7.43 6.05 7.66 7.62 0.00 0.00 4.23 3.93 4.58 0.00 7.26 0.00 0.00 0.00 7.62 7.00 7.52 0.00 0.00 - 10.45 51.08 1970 0.00 0.83 7.48 9.14 7.54 6.05 7.80 7.74 0.00 0.00 4.23 3.93 4.58 0.00 7.34 0.00 0.00 0.00 7.74 7.15 7.64 0.00 0.00 - 10.45 51.08 1971 0.00 0.00 7.48 9.34 7.67 6.05 7.80 7.75 0.00 0.00 4.23 0.00 4.58 0.00 7.34 0.00 0.00 0.00 7.75 7.15 7.65 0.00 0.00 - 10.45 51.08 1972 0.00 0.00 7.59 9.66 7.81 6.05 7.97 7.90 0.00 0.00 4.23 0.00 4.58 0.00 7.44 0.00 0.00 0.00 7.90 7.25 7.80 0.00 0.00 - 10.45 51.08 1973 0.00 0.00 7.69 9.91 7.83 6.05 7.98 7.92 0.00 0.00 4.23 0.00 4.58 0.00 7.45 0.00 0.00 0.00 7.92 7.25 7.82 0.00 0.00 - 10.45 51.08 1974 0.00 0.00 7.81 10.26 7.98 6.06 8.18 8.08 0.00 0.00 0.00 0.00 4.58 0.00 7.55 0.00 0.00 0.00 8.08 7.36 7.97 0.00 0.00 - 10.45 51.08 1975 0.00 0.00 7.90 10.54 8.09 6.06 8.31 8.20 0.00 0.00 0.00 0.00 4.58 0.00 7.62 0.00 0.00 0.00 8.20 7.41 8.20 0.00 0.00 - 10.45 51.08 1976 0.00 0.00 7.90 10.77 8.09 6.06 8.31 8.20 0.00 0.00 0.00 0.00 4.58 0.00 7.62 0.00 0.00 0.00 8.20 7.41 8.20 0.00 0.00 - 10.45 51.08 1977 0.00 0.00 7.99 11.10 8.21 6.06 8.48 8.33 0.00 0.00 0.00 0.00 4.58 0.00 7.70 0.00 0.00 0.00 8.33 7.49 8.33 0.00 0.00 - 10.45 51.08 1978 0.00 0.00 8.07 11.42 8.32 6.06 8.64 8.46 0.00 0.00 0.00 0.00 0.00 0.00 7.77 0.00 0.00 0.00 8.46 7.56 8.46 0.00 0.00 - 10.45 51.08 1979 0.00 0.00 8.13 11.70 8.41 6.06 8.77 8.56 0.00 0.00 0.00 0.00 0.00 0.00 7.82 0.00 0.00 0.00 8.56 7.61 8.56 0.00 0.00 - 10.45 51.08 1980 0.00 0.00 8.17 11.97 8.49 6.06 8.89 8.64 0.00 0.00 0.00 0.00 0.00 0.00 7.84 0.00 0.00 0.00 8.64 7.64 8.64 0.00 0.00 - 10.45 51.08 1981 0.00 0.00 8.23 12.29 8.59 6.06 9.03 8.75 0.00 0.00 0.00 0.00 0.00 0.00 7.89 0.00 0.00 0.00 8.75 7.68 8.75 0.00 0.00 - 10.45 51.08 1982 0.00 0.00 8.23 12.58 8.59 6.06 9.03 8.75 0.00 0.00 0.00 0.00 0.00 0.00 7.89 0.00 0.00 0.00 8.75 7.68 8.75 0.00 0.00 - 10.45 51.08 1983 0.00 0.00 8.26 12.83 8.64 0.00 9.13 8.82 0.00 0.00 0.00 0.00 0.00 0.00 7.91 0.00 0.00 0.00 8.82 7.70 8.82 0.00 0.00 - 10.45 51.08 1984 0.00 0.00 8.29 13.08 8.70 0.00 9.23 8.88 0.00 0.00 0.00 0.00 0.00 0.00 7.93 0.00 0.00 0.00 8.88 7.72 8.88 0.00 0.00 - 10.45 51.08 1985 0.00 0.00 8.31 13.34 8.75 0.00 9.33 8.94 0.00 0.00 0.00 0.00 0.00 0.00 7.95 0.00 0.00 0.00 8.94 7.73 8.94 0.00 0.00 - 10.45 51.08 1986 0.00 0.00 8.35 13.62 8.82 0.00 9.45 9.02 0.00 0.00 0.00 0.00 0.00 0.00 7.98 0.00 0.00 0.00 9.02 7.76 9.02 0.00 0.00 - 10.45 51.08 1987 0.00 0.00 8.38 13.91 8.87 0.00 9.55 9.08 0.00 0.00 0.00 0.00 0.00 0.00 7.99 0.00 0.00 0.00 9.08 7.77 9.08 0.00 0.00 - 10.45 51.08 1988 0.00 0.00 8.38 14.11 8.89 0.00 9.60 9.10 0.00 0.00 0.00 0.00 0.00 0.00 7.99 0.00 0.00 0.00 9.10 7.77 9.10 0.00 0.00 - 10.45 51.08 1989 0.00 0.00 8.38 14.30 8.90 0.00 9.64 9.12 0.00 0.00 0.00 0.00 0.00 0.00 7.99 0.00 0.00 0.00 9.12 7.77 9.12 0.00 0.00 - 10.45 51.08 1990 0.00 0.00 8.41 14.58 8.95 0.00 9.75 9.19 0.00 0.00 0.00 0.00 0.00 0.00 8.01 0.00 0.00 0.00 9.19 7.79 9.19 0.00 0.00 - 10.45 51.08 1991 0.00 0.00 8.41 14.73 8.95 0.00 9.75 9.19 0.00 0.00 0.00 0.00 0.00 0.00 8.01 0.00 0.00 0.00 9.19 7.79 9.19 0.00 0.00 - 10.45 51.08 1992 0.00 0.00 8.41 14.93 8.97 0.00 9.79 9.21 0.00 0.00 0.00 0.00 0.00 0.00 8.01 0.00 0.00 0.00 9.21 7.79 9.21 0.00 0.00 - 10.45 51.08 1993 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 - 10.45 51.08 1994 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 - 10.45 51.08 1995 0.00 0.60 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 - 10.45 51.08 1996 0.00 0.69 0.00 4.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 - 10.45 51.08 1997 0.00 0.76 4.55 4.85 4.55 4.34 4.55 4.56 0.00 0.00 0.00 0.00 0.00 0.00 4.54 0.00 0.00 4.56 4.56 4.51 4.56 0.00 0.00 - 10.45 51.08 1998 0.00 0.81 5.22 5.62 5.04 4.88 5.08 5.14 0.00 0.00 3.92 0.00 4.12 0.00 5.16 0.00 0.00 5.19 5.18 5.08 5.23 0.00 0.00 - 10.45 51.08 1999 0.00 0.83 5.79 6.31 5.60 5.31 5.65 5.72 0.00 0.00 4.17 3.92 4.36 0.00 5.73 0.00 0.00 5.77 5.76 5.64 5.82 0.00 0.00 - 10.45 51.08 2000 0.00 0.84 6.21 6.85 6.00 5.60 6.07 6.13 0.00 0.00 4.31 4.02 4.50 0.00 6.14 0.00 0.00 6.19 6.18 6.04 6.25 0.00 0.00 - 10.45 51.08 2001 0.00 0.84 6.54 7.31 6.30 5.80 6.38 6.46 0.00 0.00 4.33 4.02 4.54 0.00 6.45 0.00 0.00 6.52 6.51 6.33 6.59 0.00 0.00 - 10.45 51.08 2002 0.00 0.84 6.76 7.70 6.51 5.89 6.61 6.69 0.00 0.00 4.33 4.02 4.55 0.00 6.66 0.00 0.00 6.75 6.75 6.54 6.84 0.00 0.00 - 10.45 51.08 2003 0.00 0.84 6.90 7.96 6.63 5.90 6.74 6.82 0.00 0.00 4.33 4.02 4.55 0.00 6.78 0.00 0.00 6.90 6.89 6.64 6.99 0.00 0.00 - 10.45 51.08 2004 0.00 0.84 7.03 8.24 6.73 5.91 6.87 6.95 0.00 0.00 4.33 4.02 4.55 0.00 6.89 0.00 0.00 7.03 7.02 6.75 7.13 0.00 0.00 - 10.45 51.08 2005 0.00 0.84 7.20 8.58 6.89 5.93 7.05 7.13 0.00 0.00 4.33 4.02 4.55 0.00 7.04 0.00 0.00 7.22 7.20 6.97 7.32 0.00 0.00 - 10.45 51.08 2006 0.00 0.85 7.34 8.88 7.09 5.94 7.20 7.28 0.00 0.00 4.33 4.02 4.55 0.00 7.25 0.00 0.00 7.37 7.35 7.11 7.48 0.00 0.00 - 10.45 51.08 2007 0.00 0.85 7.52 9.27 7.26 5.96 7.40 7.50 0.00 0.00 4.33 4.02 4.55 0.00 7.42 0.00 0.00 7.72 7.58 7.26 7.72 0.00 0.00 - 10.45 51.08 2008 0.00 0.00 7.59 9.51 7.33 5.96 7.47 7.56 0.00 0.00 4.33 0.00 4.55 0.00 7.48 0.00 0.00 7.80 7.80 7.30 7.80 0.00 0.00 - 10.45 51.08 2009 0.00 0.00 7.67 9.78 7.41 5.96 7.57 7.65 0.00 0.00 4.33 0.00 4.55 0.00 7.56 0.00 0.00 7.91 7.91 7.38 7.91 0.00 0.00 - 10.45 51.08 2010 0.00 0.00 7.78 10.12 7.61 5.96 7.71 7.77 0.00 0.00 0.00 0.00 4.55 0.00 7.65 0.00 0.00 8.04 8.04 7.46 8.04 0.00 0.00 - 10.45 51.08 2011 0.00 0.00 7.86 10.42 7.67 5.96 7.99 7.87 0.00 0.00 0.00 0.00 4.55 0.00 7.72 0.00 0.00 8.15 8.15 7.61 8.15 0.00 0.00 - 10.45 51.08 2012 0.00 0.00 7.89 10.66 8.04 5.96 8.25 7.93 0.00 0.00 0.00 0.00 0.00 0.00 7.74 0.00 0.00 8.21 8.21 7.63 8.21 0.00 0.00 diff --git a/rLPJGUESS/inst/extdata/outputsForTests/run_distinterval/outDirectory/vmaxnlim.out b/rLPJGUESS/inst/extdata/outputsForTests/run_distinterval/outDirectory/vmaxnlim.out deleted file mode 100644 index 61d9c0f..0000000 --- a/rLPJGUESS/inst/extdata/outputsForTests/run_distinterval/outDirectory/vmaxnlim.out +++ /dev/null @@ -1,63 +0,0 @@ - Lon Lat YearAbi_alb BESBet_penBet_pubCar_betCor_aveFag_sylFra_excJun_oxy MRSPic_abiPic_sitPin_sylPin_halPop_treQue_cocQue_ileQue_pubQue_robTil_corUlm_gla C3_gr C4_gr Total - 10.45 51.08 1951 0.00 0.00 0.00 1.00 1.00 0.00 1.00 1.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.00 1.00 1.00 0.00 0.00 1.00 - 10.45 51.08 1952 0.00 0.00 0.00 1.00 1.00 0.00 1.00 1.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.00 1.00 1.00 0.00 0.00 1.00 - 10.45 51.08 1953 0.00 0.00 0.00 1.00 1.00 0.00 1.00 1.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.00 1.00 1.00 0.00 0.00 1.00 - 10.45 51.08 1954 0.00 0.00 0.00 1.00 1.00 0.00 1.00 1.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.00 1.00 1.00 0.00 0.00 1.00 - 10.45 51.08 1955 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 - 10.45 51.08 1956 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 - 10.45 51.08 1957 0.00 1.00 1.00 1.00 1.00 1.00 1.00 1.00 0.00 0.00 1.00 1.00 1.00 0.00 1.00 0.00 0.00 0.00 1.00 1.00 1.00 1.00 0.00 1.00 - 10.45 51.08 1958 0.00 1.00 1.00 1.00 1.00 1.00 1.00 1.00 0.00 0.00 1.00 1.00 1.00 0.00 1.00 0.00 0.00 0.00 1.00 1.00 1.00 1.00 0.00 1.00 - 10.45 51.08 1959 0.00 1.00 1.00 1.00 1.00 1.00 1.00 1.00 0.00 0.00 1.00 1.00 1.00 0.00 1.00 0.00 0.00 0.00 1.00 1.00 1.00 1.00 0.00 1.00 - 10.45 51.08 1960 0.00 1.00 1.00 1.00 1.00 1.00 1.00 1.00 0.00 0.00 1.00 1.00 1.00 0.00 1.00 0.00 0.00 0.00 1.00 1.00 1.00 1.00 0.00 1.00 - 10.45 51.08 1961 0.00 1.00 1.00 1.00 1.00 1.00 1.00 1.00 0.00 0.00 1.00 1.00 1.00 0.00 1.00 0.00 0.00 0.00 1.00 1.00 1.00 0.00 0.00 1.00 - 10.45 51.08 1962 0.00 1.00 1.00 1.00 1.00 1.00 1.00 1.00 0.00 0.00 1.00 1.00 1.00 0.00 1.00 0.00 0.00 0.00 1.00 1.00 1.00 0.00 0.00 1.00 - 10.45 51.08 1963 0.00 1.00 1.00 1.00 1.00 1.00 1.00 1.00 0.00 0.00 1.00 1.00 1.00 0.00 1.00 0.00 0.00 0.00 1.00 1.00 1.00 0.00 0.00 1.00 - 10.45 51.08 1964 0.00 1.00 1.00 1.00 1.00 1.00 1.00 1.00 0.00 0.00 1.00 1.00 1.00 0.00 1.00 0.00 0.00 0.00 1.00 1.00 1.00 0.00 0.00 1.00 - 10.45 51.08 1965 0.00 1.00 1.00 1.00 1.00 1.00 1.00 1.00 0.00 0.00 1.00 1.00 1.00 0.00 1.00 0.00 0.00 0.00 1.00 1.00 1.00 0.00 0.00 1.00 - 10.45 51.08 1966 0.00 1.00 1.00 1.00 1.00 1.00 1.00 1.00 0.00 0.00 1.00 1.00 1.00 0.00 1.00 0.00 0.00 0.00 1.00 1.00 1.00 0.00 0.00 1.00 - 10.45 51.08 1967 0.00 1.00 1.00 1.00 1.00 1.00 1.00 1.00 0.00 0.00 1.00 1.00 1.00 0.00 1.00 0.00 0.00 0.00 1.00 1.00 1.00 0.00 0.00 1.00 - 10.45 51.08 1968 0.00 1.00 1.00 1.00 1.00 1.00 1.00 1.00 0.00 0.00 1.00 1.00 1.00 0.00 1.00 0.00 0.00 0.00 1.00 1.00 1.00 0.00 0.00 1.00 - 10.45 51.08 1969 0.00 1.00 1.00 1.00 1.00 1.00 1.00 1.00 0.00 0.00 1.00 1.00 1.00 0.00 1.00 0.00 0.00 0.00 1.00 1.00 1.00 0.00 0.00 1.00 - 10.45 51.08 1970 0.00 1.00 1.00 1.00 1.00 1.00 1.00 1.00 0.00 0.00 1.00 1.00 1.00 0.00 1.00 0.00 0.00 0.00 1.00 1.00 1.00 0.00 0.00 1.00 - 10.45 51.08 1971 0.00 0.00 1.00 1.00 1.00 1.00 1.00 1.00 0.00 0.00 1.00 1.00 1.00 0.00 1.00 0.00 0.00 0.00 1.00 1.00 1.00 0.00 0.00 1.00 - 10.45 51.08 1972 0.00 0.00 1.00 1.00 1.00 1.00 1.00 1.00 0.00 0.00 1.00 1.00 1.00 0.00 1.00 0.00 0.00 0.00 1.00 1.00 1.00 0.00 0.00 1.00 - 10.45 51.08 1973 0.00 0.00 1.00 1.00 1.00 1.00 1.00 1.00 0.00 0.00 1.00 1.00 1.00 0.00 1.00 0.00 0.00 0.00 1.00 1.00 1.00 0.00 0.00 1.00 - 10.45 51.08 1974 0.00 0.00 1.00 1.00 1.00 1.00 1.00 1.00 0.00 0.00 1.00 1.00 1.00 0.00 1.00 0.00 0.00 0.00 1.00 1.00 1.00 0.00 0.00 1.00 - 10.45 51.08 1975 0.00 0.00 1.00 1.00 1.00 1.00 1.00 1.00 0.00 0.00 1.00 1.00 1.00 0.00 1.00 0.00 0.00 0.00 1.00 1.00 1.00 0.00 0.00 1.00 - 10.45 51.08 1976 0.00 0.00 1.00 1.00 1.00 1.00 1.00 1.00 0.00 0.00 1.00 1.00 1.00 0.00 1.00 0.00 0.00 0.00 1.00 1.00 1.00 0.00 0.00 1.00 - 10.45 51.08 1977 0.00 0.00 1.00 1.00 1.00 1.00 1.00 1.00 0.00 0.00 1.00 1.00 1.00 0.00 1.00 0.00 0.00 0.00 1.00 1.00 1.00 0.00 0.00 1.00 - 10.45 51.08 1978 0.00 0.00 1.00 1.00 1.00 1.00 1.00 1.00 0.00 0.00 1.00 1.00 0.00 0.00 1.00 0.00 0.00 0.00 1.00 1.00 1.00 0.00 0.00 1.00 - 10.45 51.08 1979 0.00 0.00 1.00 1.00 1.00 1.00 1.00 1.00 0.00 0.00 1.00 1.00 0.00 0.00 1.00 0.00 0.00 0.00 1.00 1.00 1.00 0.00 0.00 1.00 - 10.45 51.08 1980 0.00 0.00 1.00 1.00 1.00 1.00 1.00 1.00 0.00 0.00 1.00 1.00 0.00 0.00 1.00 0.00 0.00 0.00 1.00 1.00 1.00 0.00 0.00 1.00 - 10.45 51.08 1981 0.00 0.00 1.00 1.00 1.00 1.00 1.00 1.00 0.00 0.00 1.00 1.00 0.00 0.00 1.00 0.00 0.00 0.00 1.00 1.00 1.00 0.00 0.00 1.00 - 10.45 51.08 1982 0.00 0.00 1.00 1.00 1.00 1.00 1.00 1.00 0.00 0.00 1.00 1.00 0.00 0.00 1.00 0.00 0.00 0.00 1.00 1.00 1.00 0.00 0.00 1.00 - 10.45 51.08 1983 0.00 0.00 1.00 1.00 1.00 0.00 1.00 1.00 0.00 0.00 0.00 1.00 0.00 0.00 1.00 0.00 0.00 0.00 1.00 1.00 1.00 0.00 0.00 1.00 - 10.45 51.08 1984 0.00 0.00 1.00 1.00 1.00 0.00 1.00 1.00 0.00 0.00 0.00 1.00 0.00 0.00 1.00 0.00 0.00 0.00 1.00 1.00 1.00 0.00 0.00 1.00 - 10.45 51.08 1985 0.00 0.00 1.00 1.00 1.00 0.00 1.00 1.00 0.00 0.00 0.00 1.00 0.00 0.00 1.00 0.00 0.00 0.00 1.00 1.00 1.00 0.00 0.00 1.00 - 10.45 51.08 1986 0.00 0.00 1.00 1.00 1.00 0.00 1.00 1.00 0.00 0.00 0.00 1.00 0.00 0.00 1.00 0.00 0.00 0.00 1.00 1.00 1.00 0.00 0.00 1.00 - 10.45 51.08 1987 0.00 0.00 1.00 1.00 1.00 0.00 1.00 1.00 0.00 0.00 0.00 1.00 0.00 0.00 1.00 0.00 0.00 0.00 1.00 1.00 1.00 0.00 0.00 1.00 - 10.45 51.08 1988 0.00 0.00 1.00 1.00 1.00 0.00 1.00 1.00 0.00 0.00 0.00 1.00 0.00 0.00 1.00 0.00 0.00 0.00 1.00 1.00 1.00 0.00 0.00 1.00 - 10.45 51.08 1989 0.00 0.00 1.00 1.00 1.00 0.00 1.00 1.00 0.00 0.00 0.00 1.00 0.00 0.00 1.00 0.00 0.00 0.00 1.00 1.00 1.00 0.00 0.00 1.00 - 10.45 51.08 1990 0.00 0.00 1.00 1.00 1.00 0.00 1.00 1.00 0.00 0.00 0.00 0.00 0.00 0.00 1.00 0.00 0.00 0.00 1.00 1.00 1.00 0.00 0.00 1.00 - 10.45 51.08 1991 0.00 0.00 1.00 1.00 1.00 0.00 1.00 1.00 0.00 0.00 0.00 0.00 0.00 0.00 1.00 0.00 0.00 0.00 1.00 1.00 1.00 0.00 0.00 1.00 - 10.45 51.08 1992 0.00 0.00 1.00 1.00 1.00 0.00 1.00 1.00 0.00 0.00 0.00 0.00 0.00 0.00 1.00 0.00 0.00 0.00 1.00 1.00 1.00 0.00 0.00 1.00 - 10.45 51.08 1993 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 - 10.45 51.08 1994 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 - 10.45 51.08 1995 0.00 1.00 1.00 1.00 1.00 1.00 1.00 1.00 0.00 0.00 1.00 1.00 1.00 0.00 1.00 0.00 0.00 1.00 1.00 1.00 1.00 1.00 0.00 1.00 - 10.45 51.08 1996 0.00 1.00 1.00 1.00 1.00 1.00 1.00 1.00 0.00 0.00 1.00 1.00 1.00 0.00 1.00 0.00 0.00 1.00 1.00 1.00 1.00 1.00 0.00 1.00 - 10.45 51.08 1997 0.00 1.00 1.00 1.00 1.00 1.00 1.00 1.00 0.00 0.00 1.00 1.00 1.00 0.00 1.00 0.00 0.00 1.00 1.00 1.00 1.00 1.00 0.00 1.00 - 10.45 51.08 1998 0.00 1.00 1.00 1.00 1.00 1.00 1.00 1.00 0.00 0.00 1.00 1.00 1.00 0.00 1.00 0.00 0.00 1.00 1.00 1.00 1.00 1.00 0.00 1.00 - 10.45 51.08 1999 0.00 1.00 1.00 1.00 1.00 1.00 1.00 1.00 0.00 0.00 1.00 1.00 1.00 0.00 1.00 0.00 0.00 1.00 1.00 1.00 1.00 0.00 0.00 1.00 - 10.45 51.08 2000 0.00 1.00 1.00 1.00 1.00 1.00 1.00 1.00 0.00 0.00 1.00 1.00 1.00 0.00 1.00 0.00 0.00 1.00 1.00 1.00 1.00 0.00 0.00 1.00 - 10.45 51.08 2001 0.00 1.00 1.00 1.00 1.00 1.00 1.00 1.00 0.00 0.00 1.00 1.00 1.00 0.00 1.00 0.00 0.00 1.00 1.00 1.00 1.00 0.00 0.00 1.00 - 10.45 51.08 2002 0.00 1.00 1.00 1.00 1.00 1.00 1.00 1.00 0.00 0.00 1.00 1.00 1.00 0.00 1.00 0.00 0.00 1.00 1.00 1.00 1.00 0.00 0.00 1.00 - 10.45 51.08 2003 0.00 1.00 1.00 1.00 1.00 1.00 1.00 1.00 0.00 0.00 1.00 1.00 1.00 0.00 1.00 0.00 0.00 1.00 1.00 1.00 1.00 0.00 0.00 1.00 - 10.45 51.08 2004 0.00 1.00 1.00 1.00 1.00 1.00 1.00 1.00 0.00 0.00 1.00 1.00 1.00 0.00 1.00 0.00 0.00 1.00 1.00 1.00 1.00 0.00 0.00 1.00 - 10.45 51.08 2005 0.00 1.00 1.00 1.00 1.00 1.00 1.00 1.00 0.00 0.00 1.00 1.00 1.00 0.00 1.00 0.00 0.00 1.00 1.00 1.00 1.00 0.00 0.00 1.00 - 10.45 51.08 2006 0.00 1.00 1.00 1.00 1.00 1.00 1.00 1.00 0.00 0.00 1.00 1.00 1.00 0.00 1.00 0.00 0.00 1.00 1.00 1.00 1.00 0.00 0.00 1.00 - 10.45 51.08 2007 0.00 1.00 1.00 1.00 1.00 1.00 1.00 1.00 0.00 0.00 1.00 1.00 1.00 0.00 1.00 0.00 0.00 1.00 1.00 1.00 1.00 0.00 0.00 1.00 - 10.45 51.08 2008 0.00 0.00 1.00 1.00 1.00 1.00 1.00 1.00 0.00 0.00 1.00 1.00 1.00 0.00 1.00 0.00 0.00 1.00 1.00 1.00 1.00 0.00 0.00 1.00 - 10.45 51.08 2009 0.00 0.00 1.00 1.00 1.00 1.00 1.00 1.00 0.00 0.00 1.00 1.00 1.00 0.00 1.00 0.00 0.00 1.00 1.00 1.00 1.00 0.00 0.00 1.00 - 10.45 51.08 2010 0.00 0.00 1.00 1.00 1.00 1.00 1.00 1.00 0.00 0.00 0.00 1.00 1.00 0.00 1.00 0.00 0.00 1.00 1.00 1.00 1.00 0.00 0.00 1.00 - 10.45 51.08 2011 0.00 0.00 1.00 1.00 1.00 1.00 1.00 1.00 0.00 0.00 0.00 1.00 1.00 0.00 1.00 0.00 0.00 1.00 1.00 1.00 1.00 0.00 0.00 1.00 - 10.45 51.08 2012 0.00 0.00 1.00 1.00 1.00 1.00 1.00 1.00 0.00 0.00 0.00 1.00 0.00 0.00 1.00 0.00 0.00 1.00 1.00 1.00 1.00 0.00 0.00 1.00 diff --git a/rLPJGUESS/inst/extdata/outputsForTests/run_estinterval/europe.ins b/rLPJGUESS/inst/extdata/outputsForTests/run_estinterval/europe.ins deleted file mode 100644 index 0d98e94..0000000 --- a/rLPJGUESS/inst/extdata/outputsForTests/run_estinterval/europe.ins +++ /dev/null @@ -1,1103 +0,0 @@ -!/////////////////////////////////////////////////////////////////////////////////////// -!// LPJ-GUESS INSTRUCTION SCRIPT FOR COHORT/INDIVIDUAL MODE -!// European Species -!// -!// LPJ-GUESS 3.0 -!// -!// Parameter differences with Thomas Hickler's paper: -!// -!// Hickler, T., Vohland, K., Feehan, J., Miller, P., Fronzek, S., Giesecke, T., Kuehn, I., Carter, T., Smith, B. & -!// Sykes, M. Projecting tree species-based climate-driven changes in European potential natural vegetation -!// with a generalized dynamic vegetation model. In press, Global Ecology & Biogeography. -!// -!// are commented with ! THdiff -!/////////////////////////////////////////////////////////////////////////////////////// - - -!/////////////////////////////////////////////////////////////////////////////////////// -! Output files -! - -! outputdirectory is mandatory. Should be "./" for parallel runs. -outputdirectory "/home/ramiro/Github/TestCode/LPJrunTest/runDirectory/outDirectory/" - -! Prefined yearly output -! These files may be outcommented if their output is not required. -file_cmass "cmass.out" -file_anpp "anpp.out" -file_agpp "agpp.out" -file_fpc "fpc.out" -file_aaet "aaet.out" -file_lai "lai.out" -file_cflux "cflux.out" -file_dens "dens.out" -file_runoff "runoff.out" -file_cpool "cpool.out" -file_clitter "clitter.out" -file_firert "firert.out" -file_aiso "aiso.out" -file_amon "amon.out" -file_speciesheights "speciesheight.out" - -file_nmass "nmass.out" -file_cton_leaf "cton_leaf.out" -file_ngases "ngases.out" -file_nsources "nsources.out" -file_npool "npool.out" -file_nlitter "nlitter.out" -file_nuptake "nuptake.out" -file_nflux "nflux.out" -file_vmaxnlim "vmaxnlim.out" - -! Monthly outputs -file_mnpp "mnpp.out" -file_mlai "mlai.out" -file_mrh "mrh.out" -file_mgpp "mgpp.out" -file_mra "mra.out" -file_mnee "mnee.out" -file_maet "maet.out" -file_mpet "mpet.out" -file_mevap "mevap.out" -file_mintercep "mintercep.out" -file_mrunoff "mrunoff.out" -file_mwcont_upper "mwcont_upper.out" -file_mwcont_lower "mwcont_lower.out" -file_miso "miso.out" -file_mmon "mmon.out" - -!/////////////////////////////////////////////////////////////////////////////////////// - - - -!/////////////////////////////////////////////////////////////////////////////////////// -!// RUN PARAMETERS AND OPTIONS -! - -! Settings recognised by Plib -! Run GUESS with -help option for list of keywords and their meanings - -title 'LPJ-GUESS cohort mode - European species' - -vegmode "cohort" ! "cohort", "individual" or "population" -nyear_spinup 500 ! number of years to spin up the simulation for -ifcalcsla 1 ! whether ctonto calculate SLA from leaf longevity - ! (PFT-specific value can be specified in this file instead) -ifcalccton 1 ! whether to calculate leaf C:N min from leaf longevity - ! (PFT-specific value can be specified in this file instead) -iffire 1 ! whether to implement fire (1) or not (0) -npatch 1 ! number of replicate patches to simulate -patcharea 1000 ! patch area (m2) -estinterval 5 ! years between establishment events in cohort mode -ifdisturb 1 ! whether generic patch-destroying disturbances enabled -distinterval 100 ! average return time for generic patch-destroying disturbances - ! Hickler et al. (2011) used 200 -ifbgestab 1 ! whether background establishment enabled -ifsme 1 ! whether spatial mass effect enabled -ifstochestab 1 ! whether establishment stochastic -ifstochmort 1 ! whether mortality stochastic -ifcdebt 1 ! whether to allow vegetation C storage (1) or not (0) -wateruptake "rootdist" ! "wcont", "rootdist", "smart" or "speciesspecific", - ! see documentation for water_uptake() - -!/////////////////////////////////////////////////////////////////////////////// -! PROCESS SETTINGS SPECIFIC TO NITROGEN -!/////////////////////////////////////////////////////////////////////////////// - -ifcentury 1 ! whether to use CENTURY SOM dynamics (mandatory for N cycling) -ifnlim 0 ! whether plant growth limited by available N -freenyears 100 ! number of years to spin up without N limitation (needed to build up a N pool) -nfix_a 0.102 ! first term in N fixation eqn (Conservative 0.102, Central 0.234, Upper 0.367) -nfix_b 0.524 ! second term in N fixation eqn (Conservative 0.524, Central -0.172, Upper -0.754) -nrelocfrac 0.5 ! fraction of N retranslocated prior to leaf and root shedding - - -!/////////////////////////////////////////////////////////////////////////////// -! SERIALIZATION SETTINGS -!/////////////////////////////////////////////////////////////////////////////// -state_year 500 ! year to save/start state file (no setting = after spinup) -restart 0 ! wheter to start from a state file -save_state 0 ! wheter to save a state file -state_path "" ! directory to put state files in - - -ifsmoothgreffmort 1 ! whether to vary mort_greff smoothly with growth efficiency (1) - ! or to use the standard step-function (0) - ! greff_min values below calibrated for the smooth (1) option -ifdroughtlimitedestab 1 ! whether establishment is limited by growing season drought -ifrainonwetdaysonly 1 ! whether to rain on wet days only (1), or to rain a bit every day (0) -ifbvoc 0 ! whether to include BVOC calculations (1) or not (0) - -!!!!!!!!!!!! landcover parameters !!!!!!!!!!!!!! - -run_landcover 0 ! whether to use (and change) landcover fractions (1) or not (0) - -run_urban 0 ! whether to simulate barren land (1) or not (0) -run_crop 1 ! whether to simulate crop vegetation (1) or not (0) -run_forest 0 ! whether to simulate managed forest (1) or not (0) -run_pasture 0 ! whether to simulate pasture (1) or not (0) -run_natural 0 ! whether to simulate natural vegetation (1) or not (0) -run_peatland 1 ! whether to simulate peatland (1) or not (0) - -lcfrac_fixed 0 ! use landcover fractions (%) below (1) or read from input file (0) -lc_fixed_urban 0 ! URBAN -lc_fixed_cropland 50 ! CROPLAND -lc_fixed_pasture 0 ! PASTURE -lc_fixed_forest 0 ! FOREST -lc_fixed_natural 25 ! NATURAL -lc_fixed_peatland 25 ! PEATLAND -equal_landcover_area 0 ! divide gridcell into equal active landcover fractions - -!/////////////////////////////////////////////////////////////////////////////////////// - - -!/////////////////////////////////////////////////////////////////////////////////////// -!// PARAMETERS FOR PFTS -!// Run GUESS with -help option for list of keywords and their meanings - -group "common" ( - - ! Parameters common to all PFTs - - lambda_max 0.8 ! 0.8 - emax 5 ! 5 - reprfrac 0.1 ! 0.1 - wscal_min 0.35 ! 0.35 - drought_tolerance 1e-04 ! 0.0001 - ! default value - ensures that this has little effect even if - ! ifdroughtlimitedestab is turned on - landcover "natural" - turnover_harv_prod 1 ! 1 -) - - -group "tree" ( - - ! Parameters common to all trees - - common - lifeform "tree" - pathway "c3" - rootdist 0.6 0.4 - crownarea_max 40 ! 40 - turnover_root 0.7 ! 0.7 - ltor_max 1 ! 1 - k_allom2 40 ! 40 - k_allom3 0.67 ! 0.67 - k_rp 1.6 ! 1.6 - wooddens 200 ! 200 - cton_root 29 ! 29 - cton_sap 330 ! 330 - nuptoroot 0.0028 ! 0.0028 - km_volume 1.477e-06 ! 0.000001477 - kest_repr 200 ! 200 - kest_bg 0.1 ! 0.1 - kest_pres 1 ! 1 - litterme 0.3 ! 0.3 - harv_eff 0.7 ! 0.7 - res_outtake 0.75 ! 0.75 - harvest_slow_frac 0.33 ! 0.33 - turnover_harv_prod 0.04 ! 0.04 -) - -group "shrub" ( - common - lifeform "tree" - leafphysiognomy "broadleaf" - pathway "c3" - rootdist 0.6 0.4 - crownarea_max 10 ! 10 - turnover_root 0.7 ! 0.7 - ltor_max 1 ! 1 - k_allom1 100 ! 100 - k_allom2 5 ! 5 - k_allom3 0.67 ! 0.67 - k_rp 1.6 ! 1.6 - wooddens 250 ! 250 - cton_root 29 ! 29 - cton_sap 330 ! 330 - nuptoroot 0.0028 ! 0.0028 - km_volume 1.477e-06 ! 0.000001477 - fnstorage 0.3 ! 0.3 - kest_repr 200 ! 200 - kest_bg 0.1 ! 0.1 - kest_pres 1 ! 1 - litterme 0.3 ! 0.3 - longevity 100 ! 100 -) - -group "needle_leaved" ( - leafphysiognomy "needleleaf" - k_allom1 150 ! 150 - k_latosa 4000 ! 4000 - ga 0.14 ! 0.140 -) - -group "broad_leaved" ( - leafphysiognomy "broadleaf" - k_allom1 250 ! 250 - k_latosa 5000 ! 5000 - leaflong 0.5 ! 0.5 - turnover_leaf 1 ! 1 - ga 0.04 ! 0.040 -) - -group "grass" ( - - ! Parameters common to all grasses - - common - lifeform "grass" - leafphysiognomy "broadleaf" - ltor_max 0.5 ! 0.5 - cton_root 29 ! 29 - nuptoroot 0.00551 ! 0.00551 - km_volume 1.876e-06 ! 0.000001876 - fnstorage 0.3 ! 0.3 - respcoeff 1 ! 1.0 - litterme 0.2 ! 0.2 - ga 0.03 ! 0.030 -) - - -! greff_min values below calibrated for the smooth (ifsmoothgreffmort 1) option -! Many THdiff values here -group "shade_tolerant" ( - est_max 0.05 ! 0.05 - parff_min 350000 ! 350000 - alphar 3 ! 3.0 - greff_min 0.04 ! 0.04 - turnover_sap 0.05 ! 0.05 -) - - -! So far only trial values; not in global version -group "intermediate_shade_tolerant" ( - est_max 0.15 ! 0.15 - parff_min 2e+06 ! 2000000 - alphar 7 ! 7.0 - greff_min 0.06 ! 0.06 - turnover_sap 0.075 ! 0.075 -) - - -! From global version; values from orginal European version after "!" -group "shade_intolerant" ( - est_max 0.2 ! 0.2 - parff_min 2500000 ! 2500000 - alphar 10 ! 10.0 - greff_min 0.08 ! 0.08 - turnover_sap 0.1 ! 0.1 -) - - -group "boreal_tree" ( - respcoeff 1 ! 1.0 - pstemp_min -4 ! -4 - pstemp_low 10 ! 10 - pstemp_high 25 ! 25 - pstemp_max 38 ! 38 -) - -group "temperate_tree" ( - respcoeff 1 ! 1.0 - pstemp_min -2 ! -2 - pstemp_low 15 ! 15 - pstemp_high 25 ! 25 - pstemp_max 38 ! 38 -) - - -!/////////////////////////////////////////////////////////////////////////////////////// -! PFTs and species follow -! -! THdiff notes: -! 1. Thomas Hickler didn't give the values used for the tcmax_est and twmin_est parameters -! 2. rootdist is different for (z1 in brackets): Abi_alb (0.8), Bet_pen (0.8), Bet_pub (0.8), Car_bet (0.7), -! Cor_ave (0.7), Fag_syl (0.8), Fra_exc (0.8) - - -pft "Abi_alb" ( - - include 1 ! 1 - tree - shade_tolerant - temperate_tree - needle_leaved - phenology "evergreen" - !sla 9.3 ! 9.3 - gmin 0.3 ! 0.3 - fnstorage 0.05 ! 0.05 - leaflong 3 ! 3 - turnover_leaf 0.33 ! 0.33 - phengdd5ramp 0 ! 0 - tcmin_surv -2 ! -2 - tcmin_est -2 ! -2 - tcmax_est 2 ! 2 - twmin_est 6 ! 6 - gdd5min_est 1600 ! 1600 - k_chilla 0 ! 0 - k_chillb 100 ! 100 - k_chillk 0.05 ! 0.05 - fireresist 0.1 ! 0.1 - intc 0.06 ! 0.06 - longevity 350 ! 350 - drought_tolerance 0.35 ! 0.35 - eps_iso 0.05 ! 0.05 - seas_iso 0 ! 0 - eps_mon 1.8 ! 1.8 - storfrac_mon 0.5 ! 0.5 -) - - -pft "BES" ( - - ! boreal evergreen shrub - - include 1 ! 1 - shrub - boreal_tree - shade_intolerant - rootdist 0.8 0.2 - phenology "evergreen" - crownarea_max 3 ! 3 - k_allom1 20 ! 20 - k_allom2 5 ! 5 - k_latosa 500 ! 500 - !sla 9.3 ! 9.3 - gmin 0.3 ! 0.3 - leaflong 2 ! 2 - turnover_leaf 0.5 ! 0.5 - turnover_sap 0.05 ! 0.05 - phengdd5ramp 0 ! 0 - tcmin_surv -1000 ! -1000 - tcmin_est -1000 ! -1000 - tcmax_est -1 ! -1.0 - twmin_est -1000 ! -1000 - gdd5min_est 200 ! 200 - longevity 50 ! 50 - k_chilla 0 ! 0 - k_chillb 100 ! 100 - k_chillk 0.05 ! 0.05 - fireresist 0.1 ! 0.1 - intc 0.06 ! 0.06 - drought_tolerance 0.25 ! 0.25 - eps_iso 2 ! 2.0 - seas_iso 0 ! 0 - eps_mon 4 ! 4.0 - storfrac_mon 0.5 ! 0.5 - ga 0.04 ! 0.040 -) - - -pft "Bet_pen" ( - - include 1 ! 1 - tree - shade_intolerant - temperate_tree - broad_leaved - phenology "summergreen" - !sla 24.3 ! 24.3 - gmin 0.5 ! 0.5 - fnstorage 0.15 ! 0.15 - phengdd5ramp 200 ! 200 - tcmin_surv -30 ! -30 - tcmin_est -30 ! -30 - tcmax_est 7 ! 7 - twmin_est 5 ! 5 - gdd5min_est 700 ! 700 - k_chilla 0 ! 0 - k_chillb 350 ! 350 - k_chillk 0.05 ! 0.05 - fireresist 0.1 ! 0.1 - intc 0.02 ! 0.02 - longevity 200 ! 200 - drought_tolerance 0.42 ! 0.42 - eps_iso 0.2 ! 0.2 - seas_iso 1 ! 1 - eps_mon 6 ! 6. - storfrac_mon 0 ! 0. -) - - -pft "Bet_pub" ( - - include 1 ! 1 - tree - shade_intolerant - boreal_tree - broad_leaved - phenology "summergreen" - !sla 24.3 ! 24.3 - gmin 0.5 ! 0.5 - fnstorage 0.15 ! 0.15 - phengdd5ramp 200 ! 200 - tcmin_surv -30 ! -30 - tcmin_est -30 ! -30 - tcmax_est 3 ! 3 - twmin_est 5 ! 5 - gdd5min_est 350 ! 350 - k_chilla 0 ! 0 - k_chillb 350 ! 350 - k_chillk 0.05 ! 0.05 - fireresist 0.1 ! 0.1 - intc 0.02 ! 0.02 - longevity 200 ! 200 - drought_tolerance 0.5 ! 0.5 - eps_iso 0 ! 0. - seas_iso 1 ! 1 - eps_mon 1 ! 1.0 - storfrac_mon 0 ! 0. -) - - -pft "Car_bet" ( - - include 1 ! 1 - tree - intermediate_shade_tolerant - temperate_tree - broad_leaved - phenology "summergreen" - !sla 24.3 ! 24.3 - gmin 0.5 ! 0.5 - fnstorage 0.15 ! 0.15 - phengdd5ramp 200 ! 200 - tcmin_surv -8 ! -8 - tcmin_est -8 ! -8 - tcmax_est 5 ! 5 - twmin_est 5 ! 5 - gdd5min_est 1200 ! 1200 - k_chilla 0 ! 0 - k_chillb 600 ! 600 - k_chillk 0.05 ! 0.05 - fireresist 0.1 ! 0.1 - intc 0.02 ! 0.02 - longevity 350 ! 350 - drought_tolerance 0.33 ! 0.33 - eps_iso 0 ! 0. - seas_iso 1 ! 1 - eps_mon 0.08 ! 0.08 - storfrac_mon 0 ! 0. -) - - -pft "Cor_ave" ( - - include 1 ! 1 - tree - crownarea_max 15 - broad_leaved - intermediate_shade_tolerant - temperate_tree - phenology "summergreen" - crownarea_max 15 ! 15 - k_latosa 4000 ! 4000 - !sla 12 ! 12 - gmin 0.5 ! 0.5 - fnstorage 0.15 ! 0.15 - phengdd5ramp 200 ! 200 - tcmin_surv -11 ! -11 - tcmin_est -11 ! -11 - tcmax_est 7 ! 7 - twmin_est 5 ! 5 - gdd5min_est 800 ! 800 - k_chilla 0 ! 0 - k_chillb 350 ! 350 - k_chillk 0.05 ! 0.05 - fireresist 0.1 ! 0.1 - intc 0.02 ! 0.02 - longevity 100 ! 100 - drought_tolerance 0.3 ! 0.3 - eps_iso 0 ! 0. - seas_iso 1 ! 1 - eps_mon 0 ! 0. - storfrac_mon 0 ! 0. -) - - -pft "Fag_syl" ( - - include 1 ! 1 - tree - shade_tolerant - temperate_tree - broad_leaved - phenology "summergreen" - !sla 24.3 ! 24.3 - gmin 0.5 ! 0.5 - fnstorage 0.15 ! 0.15 - phengdd5ramp 200 ! 200 - tcmin_surv -4 ! -4.0 - tcmin_est -3.5 ! -3.5 - tcmax_est 6 ! 6 - twmin_est 5 ! 5 - gdd5min_est 1500 ! 1500 - k_chilla 0 ! 0 - k_chillb 600 ! 600 - k_chillk 0.05 ! 0.05 - fireresist 0.1 ! 0.1 - intc 0.02 ! 0.02 - longevity 500 ! 500 - drought_tolerance 0.3 ! 0.3 - eps_iso 0 ! 0. - seas_iso 1 ! 1 - eps_mon 10 ! 10. - storfrac_mon 0 ! 0. -) - - -pft "Fra_exc" ( - - include 1 ! 1 - tree - intermediate_shade_tolerant - temperate_tree - broad_leaved - phenology "summergreen" - !sla 24.3 ! 24.3 - gmin 0.5 ! 0.5 - fnstorage 0.15 ! 0.15 - phengdd5ramp 200 ! 200 - tcmin_surv -16 ! -16 - tcmin_est -16 ! -16 - tcmax_est 6 ! 6 - twmin_est 5 ! 5 - gdd5min_est 1100 ! 1100 - k_chilla 0 ! 0 - k_chillb 100 ! 100 - k_chillk 0.05 ! 0.05 - fireresist 0.1 ! 0.1 - intc 0.02 ! 0.02 - longevity 350 ! 350 - drought_tolerance 0.4 ! 0.4 - eps_iso 0 ! 0. - seas_iso 1 ! 1 - eps_mon 0 ! 0. - storfrac_mon 0 ! 0. -) - - -pft "Jun_oxy" ( - - ! Thomas Hickler's values - - include 1 ! 1 - tree ! THdiff: - shrub - shade_intolerant - temperate_tree - needle_leaved - rootdist 0.5 0.5 - phenology "evergreen" - k_latosa 1500 ! 1500 - crownarea_max 10 ! 10 - !sla 10 ! 10 - gmin 0.5 ! 0.5 - fnstorage 0.05 ! 0.05 - leaflong 1.5 ! 1.5 - turnover_leaf 0.6667 ! 0.6667 - phengdd5ramp 0 ! 0 - tcmin_surv 0 ! 0 - tcmin_est 1 ! 1 - tcmax_est 1000 ! 1000 - twmin_est -1000 ! -1000 - gdd5min_est 2200 ! 2200 - k_chilla 0 ! 0 - k_chillb 100 ! 100 - k_chillk 0.05 ! 0.05 - fireresist 0.4 ! 0.4 - intc 0.02 ! 0.02 - longevity 200 ! 200 - drought_tolerance 0.01 ! 0.01 - eps_iso 0 ! 0. - seas_iso 0 ! 0 - eps_mon 2 ! 2.0 - storfrac_mon 0.5 ! 0.5 -) - - -pft "MRS" ( - - ! Thomas Hickler's values - ! Mediterranean raingreen low shrub: - ! Cistus, Rosmarinus, Genista, Lavandula, Erica - - include 1 ! 1 - shrub ! THdiff: - has k_allom1 as 250 - shade_intolerant - temperate_tree - rootdist 0.9 0.1 - phenology "raingreen" - k_latosa 1500 ! 1500 - !sla 10 ! 10 - gmin 0.5 ! 0.5 - leaflong 0.5 ! 0.5 - turnover_leaf 1 ! 1 - phengdd5ramp 0 ! 0 - tcmin_surv 0 ! 0 - tcmin_est 1 ! 1 - tcmax_est 1000 ! 1000 - twmin_est -1000 ! -1000 - gdd5min_est 2200 ! 2200 - k_chilla 0 ! 0 - k_chillb 100 ! 100 - k_chillk 0.05 ! 0.05 - fireresist 0.3 ! 0.3 - intc 0.02 ! 0.02 - longevity 100 ! 100 - drought_tolerance 0.01 ! 0.01 - eps_iso 2 ! 2.0 - seas_iso 0 ! 0 - eps_mon 4 ! 4.0 - storfrac_mon 0.5 ! 0.5 - ga 0.04 ! 0.040 -) - - -pft "Pic_abi" ( - - include 1 ! 1 - tree - shade_tolerant - boreal_tree - needle_leaved - rootdist 0.8 0.2 - phenology "evergreen" - !sla 9.3 ! 9.3 - gmin 0.3 ! 0.3 - fnstorage 0.05 ! 0.05 - leaflong 3 ! 3 - turnover_leaf 0.33 ! 0.33 - phengdd5ramp 0 ! 0 - tcmin_surv -30 ! -30 - tcmin_est -30 ! -30 - tcmax_est -1.5 ! -1.5 - twmin_est 5 ! 5 - gdd5min_est 600 ! 600 - k_chilla 0 ! 0 - k_chillb 100 ! 100 - k_chillk 0.05 ! 0.05 - fireresist 0.1 ! 0.1 - intc 0.06 ! 0.06 - longevity 500 ! 500 - drought_tolerance 0.43 ! 0.43 - eps_iso 0.5 ! 0.5 - seas_iso 0 ! 0 - eps_mon 6 ! 6.0 - storfrac_mon 0.5 ! 0.5 -) - - -pft "Pic_sit" ( - - ! Bjarki's values - - include 1 ! 1 - tree - intermediate_shade_tolerant ! Savill's silviculture book - boreal_tree - needle_leaved - rootdist 0.8 0.2 ! ThomasH - phenology "evergreen" - k_latosa 4500 ! 4500 - !sla 9.3 ! 9.3 - gmin 0.3 ! 0.3 - fnstorage 0.05 ! 0.05 - leaflong 4 ! 4 - turnover_leaf 0.25 ! 0.25 - phengdd5ramp 0 ! 0 - tcmin_surv -18 ! -18 - tcmin_est -17 ! -17 - tcmax_est 5.5 ! 5.5 - twmin_est -1000 ! -1000 - gdd5min_est 450 ! 450 - k_chilla 0 ! 0 - k_chillb 100 ! 100 - k_chillk 0.05 ! 0.05 - fireresist 0.1 ! 0.1 - intc 0.06 ! 0.06 - longevity 700 ! 700 - drought_tolerance 0.5 ! 0.5 - eps_iso 0 ! 0. - seas_iso 0 ! 0 - eps_mon 0 ! 0. - storfrac_mon 0.5 ! 0.5 - - ! wooddens 200 - Should be less dens than P. abies (Savill) - ! turnover_sap 0.065 ! Bjarki 30% + abies! -) - - - -pft "Pin_syl" ( - - include 1 ! 1 - tree - intermediate_shade_tolerant - boreal_tree - needle_leaved - phenology "evergreen" - k_latosa 3000 ! 3000 - !sla 9.3 ! 9.3 - gmin 0.3 ! 0.3 - fnstorage 0.05 ! 0.05 - leaflong 2 ! 2 - turnover_leaf 0.5 ! 0.5 - phengdd5ramp 0 ! 0 - tcmin_surv -30 ! -30 - tcmin_est -30 ! -30 - tcmax_est -1 ! -1.0 - twmin_est 5 ! 5 - gdd5min_est 500 ! 500 - k_chilla 0 ! 0 - k_chillb 100 ! 100 - k_chillk 0.05 ! 0.05 - fireresist 0.2 ! 0.2 - intc 0.06 ! 0.06 - longevity 350 ! 350 - drought_tolerance 0.25 ! 0.25 - eps_iso 0 ! 0. - seas_iso 0 ! 0 - eps_mon 4 ! 4.0 - storfrac_mon 0.5 ! 0.5 -) - - -pft "Pin_hal" ( - - ! Thomas Hickler's values - - include 1 ! 1 - tree - shade_intolerant - temperate_tree - needle_leaved - phenology "evergreen" - k_latosa 3000 ! 3000 - !sla 9.3 ! 9.3 - gmin 0.3 ! 0.3 - fnstorage 0.05 ! 0.05 - leaflong 2 ! 2 - turnover_leaf 0.5 ! 0.5 - phengdd5ramp 0 ! 0 - tcmin_surv 3 ! 3 - tcmin_est 3 ! 3 - tcmax_est 9 ! 9 - twmin_est 21 ! 21 - gdd5min_est 3000 ! 3000 - k_chilla 0 ! 0 - k_chillb 100 ! 100 - k_chillk 0.05 ! 0.05 - fireresist 0.2 ! 0.2 - intc 0.06 ! 0.06 - longevity 350 ! 350 - drought_tolerance 0.05 ! 0.05 - eps_iso 0 ! 0. - seas_iso 0 ! 0 - eps_mon 10 ! 10.0 - storfrac_mon 0.5 ! 0.5 -) - - -pft "Pop_tre" ( - - ! Not included in Thomas Hickler's paper - - include 1 ! 1 - tree - shade_intolerant - temperate_tree - broad_leaved - rootdist 0.7 0.3 - phenology "summergreen" - !sla 24.3 ! 24.3 - gmin 0.5 ! 0.5 - fnstorage 0.15 ! 0.15 - phengdd5ramp 200 ! 200 - tcmin_surv -31 ! -31 - tcmin_est -30 ! -30 - tcmax_est 6 ! 6 - twmin_est -1000 ! -1000 - gdd5min_est 500 ! 500 - k_chilla 0 ! 0 - k_chillb 350 ! 350 - k_chillk 0.05 ! 0.05 - fireresist 0.2 ! 0.2 - intc 0.02 ! 0.02 - longevity 160 ! 160 - drought_tolerance 0.4 ! 0.4 - eps_iso 20 ! 20. - seas_iso 1 ! 1 - eps_mon 4 ! 4.0 - storfrac_mon 0 ! 0. -) - - -pft "Que_coc" ( - - ! Thomas Hickler's values - - include 1 ! 1 - shrub ! THdiff: - has k_allom1 as 250 - intermediate_shade_tolerant - temperate_tree - rootdist 0.5 0.5 - phenology "evergreen" - k_latosa 2500 ! 2500 - !sla 10 ! 10 - gmin 0.5 ! 0.5 - leaflong 1.5 ! 1.5 - turnover_leaf 0.6667 ! 0.6667 - phengdd5ramp 0 ! 0 - tcmin_surv 0 ! 0 - tcmin_est 0 ! 0 - tcmax_est 11 ! 11 - twmin_est 21 ! 21 - gdd5min_est 2200 ! 2200 - k_chilla 0 ! 0 - k_chillb 100 ! 100 - k_chillk 0.05 ! 0.05 - fireresist 0.3 ! 0.3 - intc 0.02 ! 0.02 - longevity 350 ! 350 - drought_tolerance 0.1 ! 0.1 - eps_iso 0.1 ! 0.1 - seas_iso 0 ! 0 - eps_mon 10 ! 10.0 - storfrac_mon 0 ! 0. - ga 0.04 ! 0.040 -) - - -pft "Que_ile" ( - - include 1 ! 1 - tree - intermediate_shade_tolerant - temperate_tree - broad_leaved - rootdist 0.5 0.5 - phenology "evergreen" - k_latosa 3000 ! 3000 - !sla 9.3 ! 9.3 - gmin 0.5 ! 0.5 - fnstorage 0.05 ! 0.05 - leaflong 2 ! 2 - turnover_leaf 0.5 ! 0.5 - phengdd5ramp 0 ! 0 - tcmin_surv 3 ! 3 - tcmin_est 3 ! 3 - tcmax_est 7 ! 7 - twmin_est 5 ! 5 - gdd5min_est 1800 ! 1800 - k_chilla 0 ! 0 - k_chillb 100 ! 100 - k_chillk 0.05 ! 0.05 - fireresist 0.3 ! 0.3 - intc 0.02 ! 0.02 - longevity 350 ! 350 - drought_tolerance 0.1 ! 0.1 - eps_iso 0.05 ! 0.05 - seas_iso 0 ! 0 - eps_mon 16 ! 16.0 - storfrac_mon 0 ! 0. -) - - -pft "Que_pub" ( - - ! Thomas Hickler's values - - include 1 ! 1 - tree - intermediate_shade_tolerant - temperate_tree - broad_leaved - phenology "summergreen" - !sla 24.3 ! 24.3 - gmin 0.5 ! 0.5 - fnstorage 0.15 ! 0.15 - phengdd5ramp 200 ! 200 - tcmin_surv -6 ! -6 - tcmin_est -5 ! -5 - tcmax_est 6 ! 6 - twmin_est -1000 ! -1000 - gdd5min_est 1900 ! 1900 - k_chilla 0 ! 0 - k_chillb 100 ! 100 - k_chillk 0.05 ! 0.05 - fireresist 0.2 ! 0.2 - intc 0.02 ! 0.02 - longevity 500 ! 500 - drought_tolerance 0.2 ! 0.2 - eps_iso 50 ! 50.0 - seas_iso 1 ! 1 - eps_mon 0 ! 0. - storfrac_mon 0 ! 0. -) - - -pft "Que_rob" ( - - include 1 ! 1 - tree - intermediate_shade_tolerant - temperate_tree - broad_leaved - phenology "summergreen" - !sla 24.3 ! 24.3 - gmin 0.5 ! 0.5 - fnstorage 0.15 ! 0.15 - phengdd5ramp 200 ! 200 - tcmin_surv -10 ! -10 - tcmin_est -9 ! -9 - tcmax_est 6 ! 6 - twmin_est 5 ! 5 - gdd5min_est 1100 ! 1100 - k_chilla 0 ! 0 - k_chillb 100 ! 100 - k_chillk 0.05 ! 0.05 - fireresist 0.2 ! 0.2 - intc 0.02 ! 0.02 - longevity 500 ! 500 - drought_tolerance 0.25 ! 0.25 - eps_iso 40 ! 40.0 - seas_iso 1 ! 1 - eps_mon 0 ! 0. - storfrac_mon 0 ! 0. -) - - -pft "Til_cor" ( - - include 1 ! 1 - tree - intermediate_shade_tolerant - temperate_tree - broad_leaved - rootdist 0.8 0.2 - phenology "summergreen" - !sla 24.3 ! 24.3 - gmin 0.5 ! 0.5 - fnstorage 0.15 ! 0.15 - phengdd5ramp 200 ! 200 - tcmin_surv -12 ! -12 - tcmin_est -11 ! -11 - tcmax_est 5 ! 5 - twmin_est 5 ! 5 - gdd5min_est 1100 ! 1100 - k_chilla 0 ! 0 - k_chillb 600 ! 600 - k_chillk 0.05 ! 0.05 - fireresist 0.1 ! 0.1 - intc 0.02 ! 0.02 - longevity 350 ! 350 - drought_tolerance 0.33 ! 0.33 - eps_iso 0 ! 0. - seas_iso 1 ! 1 - eps_mon 0 ! 0. - storfrac_mon 0 ! 0. -) - - -pft "Ulm_gla" ( - - ! Not included in Thomas Hickler's paper - - include 1 ! 1 - tree - intermediate_shade_tolerant - temperate_tree - broad_leaved - phenology "summergreen" - !sla 24.3 ! 24.3 - gmin 0.5 ! 0.5 - fnstorage 0.15 ! 0.15 - phengdd5ramp 200 ! 200 - tcmin_surv -10.5 ! -10.5 - tcmin_est -9.5 ! -9.5 - tcmax_est 6 ! 6 - twmin_est 5 ! 5 - gdd5min_est 850 ! 850 - k_chilla 0 ! 0 - k_chillb 100 ! 100 - k_chillk 0.05 ! 0.05 - fireresist 0.1 ! 0.1 - intc 0.02 ! 0.02 - longevity 350 ! 350 - drought_tolerance 0.4 ! 0.4 - eps_iso 0 ! 0. - seas_iso 1 ! 1 - eps_mon 0 ! 0. - storfrac_mon 0 ! 0. -) - - -pft "C3_gr" ( - - include 1 ! 1 - grass - pathway "c3" - rootdist 0.9 0.1 - phenology "any" - !sla 32.4 ! 32.4 - gmin 0.5 ! 0.5 - leaflong 0.5 ! 0.5 - turnover_leaf 1 ! 1 - turnover_root 0.7 ! 0.7 - phengdd5ramp 100 ! 100 - pstemp_min -5 ! -5 - pstemp_low 10 ! 10 - pstemp_high 30 ! 30 - pstemp_max 45 ! 45 - tcmin_surv -1000 ! -1000 - tcmin_est -1000 ! -1000 - tcmax_est 1000 ! 1000 - twmin_est -1000 ! -1000 - gdd5min_est 0 ! 0 - parff_min 2e+06 ! 2000000 - fireresist 0.5 ! 0.5 - intc 0.01 ! 0.01 - drought_tolerance 0.01 ! 0.01 - eps_iso 0 ! 0. - seas_iso 1 ! 1 - eps_mon 1 ! 1.0 - storfrac_mon 0.5 ! 0.5 -) - - -pft "C4_gr" ( - - include 1 ! 1 - grass - pathway "c4" - rootdist 0.9 0.1 - phenology "any" - gmin 0.5 ! 0.5 - leaflong 0.5 ! 0.5 - turnover_leaf 1 ! 1 - turnover_root 0.7 ! 0.7 - phengdd5ramp 100 ! 100 - pstemp_min 6 ! 6 - pstemp_low 20 ! 20 - pstemp_high 45 ! 45 - pstemp_max 55 ! 55 - tcmin_surv 15.5 ! 15.5 - tcmin_est 15.5 ! 15.5 - tcmax_est 1000 ! 1000 - twmin_est -1000 ! -1000 - gdd5min_est 0 ! 0 - parff_min 1e+06 ! 1000000 - fireresist 0.5 ! 0.5 - intc 0.01 ! 0.01 - drought_tolerance 0.01 ! 0.01 - eps_iso 0 ! 0. - seas_iso 1 ! 1 - eps_mon 1 ! 1.0 - storfrac_mon 0.5 ! 0.5 -) - - -! Reference: Savill's silviculture book: -! The Silviculture of Trees used in British Forestry, Peter S. Savill diff --git a/rLPJGUESS/inst/extdata/outputsForTests/run_estinterval/europe_cf.ins b/rLPJGUESS/inst/extdata/outputsForTests/run_estinterval/europe_cf.ins deleted file mode 100644 index b2b4f2f..0000000 --- a/rLPJGUESS/inst/extdata/outputsForTests/run_estinterval/europe_cf.ins +++ /dev/null @@ -1,50 +0,0 @@ -! -! Instruction file with European species to be used with the -! CF I/O module. -! -! Make sure to start LPJ-GUESS with -input cf when using this -! instruction file. -! - -import "/home/ramiro/Github/TestCode/LPJrunTest/runDirectory/europe.ins" - -coordinates_precision 2 - -!/////////////////////////////////////////////////////////////////////////////////////// -! Forcing Data & gridlists -! - -param "file_gridlist" (str "/home/ramiro/Github/TestCode/LPJrunTest/runDirectory/gridlist.txt") - -param "file_co2" (str "/home/ramiro/Github/TestCode/LPJrunTest/crudata/co2_1765-2500_RCP3.txt") -param "file_cru" (str "/home/ramiro/Github/TestCode/LPJrunTest/crudata/cru_1901_2006.bin") -param "file_cru_misc" (str "/home/ramiro/Github/TestCode/LPJrunTest/crudata/cru_1901_2006misc.bin") - -! N deposition (blank string to use constant pre-industrial level of 2 kgN/ha/year) -! type of N deposition time series: either "historic" (default), "rcp26", "rcp45","rcp60","rcp85" as ndep_timeseries in cfinput.cpp -! will work with "GlobalNitrogenDeposition.bin" no matter the value of ndep_timeseries, it will anyway get the right input file -! won´t work with any other RCP ndep file, no matter the value of ndep_timeseries - -param "file_ndep" (str "/home/ramiro/Github/TestCode/LPJrunTest/crudata/GlobalNitrogenDeposition.bin") - - -param "file_temp" (str "/home/ramiro/Github/TestCode/LPJrunTest/temp.nc") -param "variable_temp" (str "temp") - -param "file_prec" (str "/home/ramiro/Github/TestCode/LPJrunTest/prec.nc") -param "variable_prec" (str "prec") - -param "file_insol" (str "/home/ramiro/Github/TestCode/LPJrunTest/rad.nc") -param "variable_insol" (str "rad") - -! Wet days can only be used with monthly precipitation - param "file_wetdays" (str "") -! param "variable_wetdays" (str "_variable_wetdays_") - -! Min/max temp is required for BVOC, -! if BVOC is switched off these can be set to "" - param "file_min_temp" (str "") -! param "variable_min_temp" (str "_variable_min_temp_") - - param "file_max_temp" (str "") -! param "variable_max_temp" (str "_variable_max_temp_") diff --git a/rLPJGUESS/inst/extdata/outputsForTests/run_estinterval/gridlist.txt b/rLPJGUESS/inst/extdata/outputsForTests/run_estinterval/gridlist.txt deleted file mode 100644 index c8ed25d..0000000 --- a/rLPJGUESS/inst/extdata/outputsForTests/run_estinterval/gridlist.txt +++ /dev/null @@ -1 +0,0 @@ -0 Erfurt diff --git a/rLPJGUESS/inst/extdata/outputsForTests/run_estinterval/guess.log b/rLPJGUESS/inst/extdata/outputsForTests/run_estinterval/guess.log deleted file mode 100644 index 575587d..0000000 --- a/rLPJGUESS/inst/extdata/outputsForTests/run_estinterval/guess.log +++ /dev/null @@ -1,13 +0,0 @@ -[LPJ-GUESS Thu Jun 21 19:05:39 2018] - - - --------------------------------------------------- -LPJ-GUESS cohort mode - European species --------------------------------------------------- - -Commencing simulation for gridcell at (10.453,51.0792) -Description: Erfurt -Using soil code and Nitrogen deposition for (10.0,51.0) - -Finished diff --git a/rLPJGUESS/inst/extdata/outputsForTests/run_estinterval/outDirectory/aaet.out b/rLPJGUESS/inst/extdata/outputsForTests/run_estinterval/outDirectory/aaet.out deleted file mode 100644 index 4874c27..0000000 --- a/rLPJGUESS/inst/extdata/outputsForTests/run_estinterval/outDirectory/aaet.out +++ /dev/null @@ -1,63 +0,0 @@ - Lon Lat Year Abi_alb BES Bet_pen Bet_pub Car_bet Cor_ave Fag_syl Fra_exc Jun_oxy MRS Pic_abi Pic_sit Pin_syl Pin_hal Pop_tre Que_coc Que_ile Que_pub Que_rob Til_cor Ulm_gla C3_gr C4_gr Total - 10.45 51.08 1951 0.00 0.41 6.70 4.71 25.73 0.00 31.44 75.18 0.00 0.00 1.13 1.35 1.22 0.00 0.00 0.00 0.00 6.60 11.72 15.56 74.27 0.00 0.00 256.02 - 10.45 51.08 1952 0.00 0.41 6.58 4.76 25.51 0.00 31.26 74.59 0.00 0.00 1.10 1.30 1.21 0.00 0.00 0.00 0.00 6.60 11.25 15.25 70.12 0.00 0.00 249.94 - 10.45 51.08 1953 0.00 0.46 6.75 5.34 28.51 0.00 35.00 79.67 0.00 0.00 1.22 1.42 1.26 0.00 0.00 0.00 0.00 7.34 11.99 17.66 78.24 0.00 0.00 274.87 - 10.45 51.08 1954 0.00 0.39 5.34 4.58 24.01 0.00 29.62 63.77 0.00 0.00 1.04 1.18 1.06 0.00 0.00 0.00 0.00 6.27 10.24 15.09 65.93 0.00 0.00 228.53 - 10.45 51.08 1955 0.00 0.29 4.96 4.38 22.85 0.00 28.30 60.64 0.00 0.00 0.99 1.11 0.99 0.00 0.00 0.00 0.00 5.95 9.31 14.50 62.63 0.00 0.00 216.91 - 10.45 51.08 1956 0.00 0.19 4.76 4.34 22.50 0.00 27.98 56.94 0.00 0.00 0.97 1.06 0.94 0.00 0.00 0.00 0.00 5.84 9.12 14.37 61.31 0.00 0.00 210.31 - 10.45 51.08 1957 0.00 0.22 5.45 5.10 26.28 0.00 32.85 66.59 0.00 0.00 1.11 1.19 1.06 0.00 0.00 0.00 0.00 6.81 10.64 16.94 71.63 0.00 0.00 245.87 - 10.45 51.08 1958 0.00 0.22 5.08 4.91 25.13 0.00 31.53 63.78 0.00 0.00 1.05 1.11 0.99 0.00 0.00 0.00 0.00 6.48 10.12 16.37 65.20 0.00 0.00 231.96 - 10.45 51.08 1959 0.00 0.24 5.41 5.68 28.72 0.00 36.79 74.31 0.00 0.00 1.17 1.20 1.08 0.00 0.00 0.00 0.00 7.49 11.69 18.69 75.77 0.00 0.00 268.25 - 10.45 51.08 1960 0.00 0.21 2.24 4.83 24.24 0.00 31.20 62.65 0.00 0.00 1.01 1.01 0.90 0.00 0.00 0.00 0.00 6.34 9.89 16.20 63.95 0.00 0.00 224.67 - 10.45 51.08 1961 0.00 0.11 2.20 4.89 24.52 0.00 31.73 63.28 0.00 0.00 1.01 0.99 0.88 0.00 0.00 0.00 0.00 6.37 6.75 16.45 64.74 0.00 0.00 223.91 - 10.45 51.08 1962 0.00 0.11 2.04 0.00 23.29 0.00 30.33 60.06 0.00 0.00 0.95 0.91 0.73 0.00 0.00 0.00 0.00 6.02 6.37 15.70 61.34 0.00 0.00 207.84 - 10.45 51.08 1963 0.00 0.11 2.09 0.00 24.62 0.00 32.25 63.57 0.00 0.00 1.00 0.93 0.75 0.00 0.00 0.00 0.00 6.32 3.53 16.32 64.75 0.00 0.00 216.27 - 10.45 51.08 1964 0.00 0.00 2.23 0.00 27.19 0.00 35.76 70.01 0.00 0.00 1.10 1.00 0.81 0.00 0.00 0.00 0.00 6.91 3.86 17.95 71.40 0.00 0.00 238.24 - 10.45 51.08 1965 0.00 0.00 1.82 0.00 22.70 0.00 29.57 58.53 0.00 0.00 0.91 0.81 0.66 0.00 0.00 0.00 0.00 5.75 3.22 15.00 59.61 0.00 0.00 198.57 - 10.45 51.08 1966 0.00 0.00 1.95 0.00 24.99 0.00 32.80 64.42 0.00 0.00 1.01 0.88 0.72 0.00 0.00 0.00 0.00 6.30 3.52 16.54 65.48 0.00 0.00 218.59 - 10.45 51.08 1967 0.00 0.00 1.93 0.00 25.28 0.00 33.41 65.24 0.00 0.00 1.02 0.87 0.72 0.00 0.00 0.00 0.00 6.37 3.57 16.74 66.30 0.00 0.00 221.43 - 10.45 51.08 1968 0.00 0.00 1.75 0.00 23.82 0.00 31.68 61.68 0.00 0.00 1.00 0.83 0.61 0.00 0.00 0.00 0.00 5.93 3.32 15.70 62.35 0.00 0.00 208.66 - 10.45 51.08 1969 0.00 0.00 1.69 0.00 23.71 0.00 31.76 61.37 0.00 0.00 0.96 0.78 0.58 0.00 0.00 0.00 0.00 5.86 3.28 15.45 61.89 0.00 0.00 207.35 - 10.45 51.08 1970 0.00 0.00 1.55 0.00 22.60 0.00 30.45 58.72 0.00 0.00 0.90 0.71 0.53 0.00 0.00 0.00 0.00 5.50 3.08 14.77 58.85 0.00 0.00 197.68 - 10.45 51.08 1971 0.00 0.00 0.00 0.00 25.02 0.00 33.91 65.35 0.00 0.00 0.98 0.76 0.57 0.00 0.00 0.00 0.00 6.01 3.36 15.93 62.06 0.00 0.00 213.93 - 10.45 51.08 1972 0.00 0.00 0.00 0.00 21.89 0.00 29.89 57.28 0.00 0.00 0.89 0.67 0.50 0.00 0.00 0.00 0.00 2.60 2.91 14.08 54.20 0.00 0.00 184.91 - 10.45 51.08 1973 0.00 0.00 0.00 0.00 22.89 0.00 31.92 60.75 0.00 0.00 0.97 0.72 0.55 0.00 0.00 0.00 0.00 2.72 3.05 14.82 56.96 0.00 0.00 195.36 - 10.45 51.08 1974 0.00 0.00 0.00 0.00 22.26 0.00 31.30 59.28 0.00 0.00 0.96 0.70 0.54 0.00 0.00 0.00 0.00 2.63 2.95 14.29 55.38 0.00 0.00 190.29 - 10.45 51.08 1975 0.00 0.00 0.00 0.00 23.16 0.00 32.93 62.11 0.00 0.00 1.05 0.75 0.59 0.00 0.00 0.00 0.00 2.77 3.11 14.86 58.11 0.00 0.00 199.45 - 10.45 51.08 1976 0.00 0.00 0.00 0.00 24.48 0.00 35.11 65.34 0.00 0.00 1.14 0.80 0.64 0.00 0.00 0.00 0.00 2.87 3.24 15.40 60.91 0.00 0.00 209.92 - 10.45 51.08 1977 0.00 0.00 0.00 0.00 20.79 0.00 30.01 39.57 0.00 0.00 0.98 0.66 0.53 0.00 0.00 0.00 0.00 2.39 2.70 12.95 51.52 0.00 0.00 162.10 - 10.45 51.08 1978 0.00 0.00 0.00 0.00 20.94 0.00 30.66 39.86 0.00 0.00 1.03 0.69 0.56 0.00 0.00 0.00 0.00 2.45 2.77 13.03 52.09 0.00 0.00 164.07 - 10.45 51.08 1979 0.00 0.00 0.00 0.00 20.83 0.00 30.90 39.54 0.00 0.00 1.11 0.73 0.60 0.00 0.00 0.00 0.00 2.46 2.80 12.93 51.83 0.00 0.00 163.73 - 10.45 51.08 1980 0.00 0.00 0.00 0.00 20.63 0.00 31.03 39.19 0.00 0.00 1.17 0.76 0.63 0.00 0.00 0.00 0.00 2.46 2.82 12.77 51.49 0.00 0.00 162.95 - 10.45 51.08 1981 0.00 0.00 0.00 0.00 22.60 0.00 34.45 42.76 0.00 0.00 1.32 0.86 0.72 0.00 0.00 0.00 0.00 2.70 0.40 13.92 56.24 0.00 0.00 175.96 - 10.45 51.08 1982 0.00 0.00 0.00 0.00 25.13 0.00 38.93 47.53 0.00 0.00 1.52 0.97 0.83 0.00 0.00 0.00 0.00 3.07 0.48 15.51 62.87 0.00 0.00 196.85 - 10.45 51.08 1983 0.00 0.00 0.00 0.00 25.32 0.00 39.80 47.88 0.00 0.00 1.58 1.01 0.87 0.00 0.00 0.00 0.00 3.09 0.49 15.53 63.32 0.00 0.00 198.90 - 10.45 51.08 1984 0.00 0.00 0.00 0.00 19.32 0.00 30.72 36.41 0.00 0.00 1.27 0.80 0.69 0.00 0.00 0.00 0.00 2.36 0.39 11.75 48.23 0.00 0.00 151.95 - 10.45 51.08 1985 0.00 0.00 0.00 0.00 23.59 0.00 38.04 44.52 0.00 0.00 1.58 0.98 0.86 0.00 0.00 0.00 0.00 2.89 0.49 14.23 58.96 0.00 0.00 186.15 - 10.45 51.08 1986 0.00 0.00 0.00 0.00 23.18 0.00 37.93 43.61 0.00 0.00 1.60 0.98 0.75 0.00 0.00 0.00 0.00 2.87 0.51 13.97 57.95 0.00 0.00 183.34 - 10.45 51.08 1987 0.00 0.00 0.00 0.00 20.98 0.00 34.72 39.53 0.00 0.00 1.51 0.91 0.70 0.00 0.00 0.00 0.00 2.59 0.47 12.51 52.50 0.00 0.00 166.42 - 10.45 51.08 1988 0.00 0.00 0.00 0.00 24.17 0.00 40.63 45.50 0.00 0.00 1.78 1.06 0.82 0.00 0.00 0.00 0.00 3.00 0.56 14.36 60.51 0.00 0.00 192.40 - 10.45 51.08 1989 0.00 0.00 0.00 0.00 26.82 0.00 45.86 50.31 0.00 0.00 2.03 1.20 0.94 0.00 0.00 0.00 0.00 3.38 0.66 15.93 67.18 0.00 0.00 214.31 - 10.45 51.08 1990 0.00 0.00 0.00 0.00 27.17 0.00 47.22 50.49 0.00 0.00 2.13 1.25 0.99 0.00 0.00 0.00 0.00 3.46 0.70 16.07 67.81 0.00 0.00 217.30 - 10.45 51.08 1991 0.00 0.00 0.00 0.00 26.06 0.00 46.13 48.54 0.00 0.00 2.14 1.24 1.00 0.00 0.00 0.00 0.00 3.43 0.72 15.56 65.68 0.00 0.00 210.52 - 10.45 51.08 1992 0.00 0.00 0.00 0.00 25.78 0.00 46.35 47.97 0.00 0.00 2.18 1.24 1.00 0.00 0.00 0.00 0.00 3.41 0.74 15.30 64.99 0.00 0.00 208.94 - 10.45 51.08 1993 0.00 0.00 0.00 0.00 25.41 0.00 46.32 47.29 0.00 0.00 2.22 1.25 1.02 0.00 0.00 0.00 0.00 3.33 0.74 14.88 63.93 0.00 0.00 206.39 - 10.45 51.08 1994 0.00 0.00 0.00 0.00 26.83 0.00 49.66 49.77 0.00 0.00 2.36 1.30 1.07 0.00 0.00 0.00 0.00 3.53 0.80 15.66 67.42 0.00 0.00 218.40 - 10.45 51.08 1995 0.00 0.00 0.00 0.00 24.93 0.00 46.73 46.53 0.00 0.00 1.93 1.22 1.01 0.00 0.00 0.00 0.00 3.28 0.76 14.37 62.95 0.00 0.00 203.73 - 10.45 51.08 1996 0.00 0.00 0.00 0.00 20.91 0.00 39.65 38.83 0.00 0.00 1.67 1.04 0.86 0.00 0.00 0.00 0.00 2.71 0.64 9.61 52.38 0.00 0.00 168.31 - 10.45 51.08 1997 0.00 0.00 0.00 0.00 25.38 0.00 48.71 47.23 0.00 0.00 1.99 1.21 1.01 0.00 0.00 0.00 0.00 3.28 0.79 11.52 63.61 0.00 0.00 204.72 - 10.45 51.08 1998 0.00 0.00 0.00 0.00 24.44 0.00 47.74 45.28 0.00 0.00 1.98 1.19 1.00 0.00 0.00 0.00 0.00 3.16 0.78 11.02 61.06 0.00 0.00 197.65 - 10.45 51.08 1999 0.00 0.00 0.00 0.00 26.27 0.00 52.21 48.66 0.00 0.00 2.17 1.29 1.09 0.00 0.00 0.00 0.00 3.44 0.88 11.79 65.84 0.00 0.00 213.62 - 10.45 51.08 2000 0.00 0.00 0.00 0.00 25.52 0.00 51.59 47.14 0.00 0.00 2.16 1.26 1.08 0.00 0.00 0.00 0.00 3.37 0.89 11.39 63.99 0.00 0.00 208.37 - 10.45 51.08 2001 0.00 0.00 0.00 0.00 7.75 0.00 51.43 46.31 0.00 0.00 2.17 1.26 1.08 0.00 0.00 0.00 0.00 3.31 0.89 11.04 62.84 0.00 0.00 188.07 - 10.45 51.08 2002 0.00 0.00 0.00 0.00 7.50 0.00 50.22 44.27 0.00 0.00 2.12 1.19 1.03 0.00 0.00 0.00 0.00 3.18 0.88 10.52 60.16 0.00 0.00 181.08 - 10.45 51.08 2003 0.00 0.00 0.00 0.00 8.96 0.00 60.16 52.22 0.00 0.00 2.54 1.41 1.25 0.00 0.00 0.00 0.00 3.79 1.08 11.98 71.16 0.00 0.00 214.55 - 10.45 51.08 2004 0.00 0.00 0.00 0.00 8.61 0.00 58.40 49.50 0.00 0.00 2.51 1.38 1.21 0.00 0.00 0.00 0.00 3.60 1.06 11.56 67.51 0.00 0.00 205.34 - 10.45 51.08 2005 0.00 0.00 0.00 0.00 9.27 0.00 62.13 51.33 0.00 0.00 2.69 1.47 1.29 0.00 0.00 0.00 0.00 3.86 1.17 12.07 70.64 0.00 0.00 215.93 - 10.45 51.08 2006 0.00 0.00 0.00 0.00 9.79 0.00 65.73 53.23 0.00 0.00 2.85 1.54 1.36 0.00 0.00 0.00 0.00 4.05 1.26 12.48 73.49 0.00 0.00 225.78 - 10.45 51.08 2007 0.00 0.00 0.00 0.00 8.08 0.00 62.90 52.26 0.00 0.00 2.82 1.49 1.32 0.00 0.00 0.00 0.00 3.93 1.25 11.56 71.93 0.00 0.00 217.55 - 10.45 51.08 2008 0.00 0.00 0.00 0.00 8.13 0.00 63.72 50.07 0.00 0.00 2.84 1.50 1.34 0.00 0.00 0.00 0.00 3.84 1.26 11.43 69.26 0.00 0.00 213.39 - 10.45 51.08 2009 0.00 0.00 0.00 0.00 7.89 0.00 62.37 48.21 0.00 0.00 2.84 1.48 1.33 0.00 0.00 0.00 0.00 3.72 1.25 10.92 63.10 0.00 0.00 203.12 - 10.45 51.08 2010 0.00 0.00 0.00 0.00 7.93 0.00 63.17 47.78 0.00 0.00 2.86 1.47 1.33 0.00 0.00 0.00 0.00 3.73 1.28 10.81 61.44 0.00 0.00 201.80 - 10.45 51.08 2011 0.00 0.00 0.00 0.00 8.75 0.00 71.07 52.89 0.00 0.00 3.18 1.60 1.45 0.00 0.00 0.00 0.00 4.10 1.43 11.76 63.77 0.00 0.00 220.00 - 10.45 51.08 2012 0.00 0.00 0.00 0.00 8.51 0.00 69.13 50.25 0.00 0.00 3.14 1.58 1.42 0.00 0.00 0.00 0.00 3.98 1.42 11.30 60.77 0.00 0.00 211.51 diff --git a/rLPJGUESS/inst/extdata/outputsForTests/run_estinterval/outDirectory/agpp.out b/rLPJGUESS/inst/extdata/outputsForTests/run_estinterval/outDirectory/agpp.out deleted file mode 100644 index d91fe74..0000000 --- a/rLPJGUESS/inst/extdata/outputsForTests/run_estinterval/outDirectory/agpp.out +++ /dev/null @@ -1,63 +0,0 @@ - Lon Lat Year Abi_alb BES Bet_pen Bet_pub Car_bet Cor_ave Fag_syl Fra_exc Jun_oxy MRS Pic_abi Pic_sit Pin_syl Pin_hal Pop_tre Que_coc Que_ile Que_pub Que_rob Til_cor Ulm_gla C3_gr C4_gr Total - 10.45 51.08 1951 0.000 0.001 0.010 0.011 0.099 0.000 0.231 0.340 0.000 0.000 0.003 0.003 0.002 0.000 0.000 0.000 0.000 0.013 0.022 0.046 0.273 0.000 0.000 1.054 - 10.45 51.08 1952 0.000 0.001 0.009 0.010 0.097 0.000 0.225 0.332 0.000 0.000 0.002 0.003 0.002 0.000 0.000 0.000 0.000 0.012 0.019 0.042 0.257 0.000 0.000 1.010 - 10.45 51.08 1953 0.000 0.001 0.010 0.011 0.107 0.000 0.260 0.362 0.000 0.000 0.003 0.003 0.002 0.000 0.000 0.000 0.000 0.013 0.021 0.047 0.286 0.000 0.000 1.127 - 10.45 51.08 1954 0.000 0.001 0.008 0.010 0.094 0.000 0.232 0.314 0.000 0.000 0.003 0.003 0.002 0.000 0.000 0.000 0.000 0.011 0.018 0.042 0.252 0.000 0.000 0.989 - 10.45 51.08 1955 0.000 0.001 0.007 0.010 0.089 0.000 0.227 0.299 0.000 0.000 0.002 0.002 0.002 0.000 0.000 0.000 0.000 0.011 0.016 0.039 0.238 0.000 0.000 0.943 - 10.45 51.08 1956 0.000 0.000 0.007 0.009 0.091 0.000 0.235 0.299 0.000 0.000 0.002 0.002 0.002 0.000 0.000 0.000 0.000 0.011 0.016 0.040 0.242 0.000 0.000 0.957 - 10.45 51.08 1957 0.000 0.000 0.007 0.010 0.097 0.000 0.253 0.322 0.000 0.000 0.002 0.002 0.002 0.000 0.000 0.000 0.000 0.011 0.016 0.042 0.257 0.000 0.000 1.021 - 10.45 51.08 1958 0.000 0.000 0.006 0.009 0.095 0.000 0.254 0.315 0.000 0.000 0.002 0.002 0.001 0.000 0.000 0.000 0.000 0.010 0.016 0.039 0.246 0.000 0.000 0.997 - 10.45 51.08 1959 0.000 0.000 0.007 0.010 0.106 0.000 0.282 0.353 0.000 0.000 0.002 0.002 0.001 0.000 0.000 0.000 0.000 0.011 0.017 0.042 0.275 0.000 0.000 1.109 - 10.45 51.08 1960 0.000 0.000 0.003 0.009 0.094 0.000 0.257 0.315 0.000 0.000 0.002 0.002 0.001 0.000 0.000 0.000 0.000 0.010 0.015 0.038 0.244 0.000 0.000 0.990 - 10.45 51.08 1961 0.000 0.000 0.003 0.009 0.097 0.000 0.275 0.327 0.000 0.000 0.002 0.002 0.001 0.000 0.000 0.000 0.000 0.010 0.010 0.039 0.253 0.000 0.000 1.029 - 10.45 51.08 1962 0.000 0.000 0.002 0.009 0.091 0.000 0.262 0.305 0.000 0.000 0.002 0.002 0.001 0.000 0.000 0.000 0.000 0.009 0.009 0.036 0.235 0.000 0.000 0.962 - 10.45 51.08 1963 0.000 0.000 0.002 0.000 0.095 0.000 0.273 0.319 0.000 0.000 0.002 0.002 0.001 0.000 0.000 0.000 0.000 0.009 0.005 0.034 0.244 0.000 0.000 0.985 - 10.45 51.08 1964 0.000 0.000 0.002 0.000 0.100 0.000 0.293 0.336 0.000 0.000 0.002 0.001 0.001 0.000 0.000 0.000 0.000 0.009 0.005 0.036 0.257 0.000 0.000 1.044 - 10.45 51.08 1965 0.000 0.000 0.002 0.000 0.090 0.000 0.270 0.302 0.000 0.000 0.002 0.001 0.001 0.000 0.000 0.000 0.000 0.009 0.005 0.033 0.232 0.000 0.000 0.947 - 10.45 51.08 1966 0.000 0.000 0.002 0.000 0.098 0.000 0.302 0.330 0.000 0.000 0.002 0.001 0.001 0.000 0.000 0.000 0.000 0.009 0.005 0.035 0.253 0.000 0.000 1.038 - 10.45 51.08 1967 0.000 0.000 0.002 0.000 0.094 0.000 0.291 0.319 0.000 0.000 0.002 0.001 0.001 0.000 0.000 0.000 0.000 0.008 0.004 0.032 0.242 0.000 0.000 0.998 - 10.45 51.08 1968 0.000 0.000 0.002 0.000 0.093 0.000 0.294 0.313 0.000 0.000 0.002 0.001 0.001 0.000 0.000 0.000 0.000 0.008 0.004 0.033 0.238 0.000 0.000 0.989 - 10.45 51.08 1969 0.000 0.000 0.002 0.000 0.090 0.000 0.284 0.303 0.000 0.000 0.002 0.001 0.001 0.000 0.000 0.000 0.000 0.008 0.004 0.029 0.229 0.000 0.000 0.953 - 10.45 51.08 1970 0.000 0.000 0.002 0.000 0.087 0.000 0.282 0.295 0.000 0.000 0.002 0.001 0.001 0.000 0.000 0.000 0.000 0.007 0.004 0.028 0.222 0.000 0.000 0.930 - 10.45 51.08 1971 0.000 0.000 0.002 0.000 0.092 0.000 0.299 0.313 0.000 0.000 0.002 0.001 0.001 0.000 0.000 0.000 0.000 0.007 0.004 0.029 0.232 0.000 0.000 0.982 - 10.45 51.08 1972 0.000 0.000 0.000 0.000 0.085 0.000 0.285 0.289 0.000 0.000 0.002 0.001 0.001 0.000 0.000 0.000 0.000 0.003 0.004 0.027 0.214 0.000 0.000 0.911 - 10.45 51.08 1973 0.000 0.000 0.000 0.000 0.084 0.000 0.290 0.290 0.000 0.000 0.002 0.001 0.001 0.000 0.000 0.000 0.000 0.003 0.004 0.026 0.214 0.000 0.000 0.916 - 10.45 51.08 1974 0.000 0.000 0.000 0.000 0.086 0.000 0.309 0.298 0.000 0.000 0.002 0.001 0.001 0.000 0.000 0.000 0.000 0.004 0.004 0.028 0.221 0.000 0.000 0.954 - 10.45 51.08 1975 0.000 0.000 0.000 0.000 0.084 0.000 0.297 0.289 0.000 0.000 0.002 0.001 0.001 0.000 0.000 0.000 0.000 0.003 0.004 0.026 0.214 0.000 0.000 0.921 - 10.45 51.08 1976 0.000 0.000 0.000 0.000 0.088 0.000 0.300 0.300 0.000 0.000 0.002 0.001 0.001 0.000 0.000 0.000 0.000 0.003 0.004 0.024 0.220 0.000 0.000 0.943 - 10.45 51.08 1977 0.000 0.000 0.000 0.000 0.087 0.000 0.316 0.202 0.000 0.000 0.002 0.001 0.001 0.000 0.000 0.000 0.000 0.004 0.004 0.027 0.221 0.000 0.000 0.865 - 10.45 51.08 1978 0.000 0.000 0.000 0.000 0.085 0.000 0.311 0.196 0.000 0.000 0.003 0.001 0.001 0.000 0.000 0.000 0.000 0.004 0.004 0.027 0.215 0.000 0.000 0.846 - 10.45 51.08 1979 0.000 0.000 0.000 0.000 0.082 0.000 0.304 0.190 0.000 0.000 0.003 0.001 0.001 0.000 0.000 0.000 0.000 0.004 0.004 0.026 0.209 0.000 0.000 0.824 - 10.45 51.08 1980 0.000 0.000 0.000 0.000 0.082 0.000 0.300 0.188 0.000 0.000 0.003 0.002 0.001 0.000 0.000 0.000 0.000 0.004 0.004 0.025 0.207 0.000 0.000 0.816 - 10.45 51.08 1981 0.000 0.000 0.000 0.000 0.089 0.000 0.344 0.206 0.000 0.000 0.003 0.002 0.001 0.000 0.000 0.000 0.000 0.004 0.005 0.029 0.227 0.000 0.000 0.910 - 10.45 51.08 1982 0.000 0.000 0.000 0.000 0.090 0.000 0.335 0.207 0.000 0.000 0.004 0.002 0.001 0.000 0.000 0.000 0.000 0.004 0.000 0.027 0.227 0.000 0.000 0.898 - 10.45 51.08 1983 0.000 0.000 0.000 0.000 0.094 0.000 0.358 0.218 0.000 0.000 0.004 0.002 0.001 0.000 0.000 0.000 0.000 0.004 0.001 0.027 0.239 0.000 0.000 0.948 - 10.45 51.08 1984 0.000 0.000 0.000 0.000 0.078 0.000 0.303 0.180 0.000 0.000 0.004 0.002 0.001 0.000 0.000 0.000 0.000 0.004 0.001 0.024 0.198 0.000 0.000 0.795 - 10.45 51.08 1985 0.000 0.000 0.000 0.000 0.090 0.000 0.355 0.208 0.000 0.000 0.004 0.002 0.001 0.000 0.000 0.000 0.000 0.004 0.001 0.027 0.229 0.000 0.000 0.920 - 10.45 51.08 1986 0.000 0.000 0.000 0.000 0.088 0.000 0.343 0.203 0.000 0.000 0.004 0.002 0.001 0.000 0.000 0.000 0.000 0.004 0.001 0.025 0.223 0.000 0.000 0.893 - 10.45 51.08 1987 0.000 0.000 0.000 0.000 0.085 0.000 0.336 0.194 0.000 0.000 0.004 0.002 0.001 0.000 0.000 0.000 0.000 0.004 0.001 0.025 0.214 0.000 0.000 0.866 - 10.45 51.08 1988 0.000 0.000 0.000 0.000 0.092 0.000 0.376 0.211 0.000 0.000 0.005 0.002 0.001 0.000 0.000 0.000 0.000 0.004 0.001 0.028 0.234 0.000 0.000 0.954 - 10.45 51.08 1989 0.000 0.000 0.000 0.000 0.101 0.000 0.414 0.231 0.000 0.000 0.005 0.002 0.002 0.000 0.000 0.000 0.000 0.005 0.001 0.029 0.256 0.000 0.000 1.046 - 10.45 51.08 1990 0.000 0.000 0.000 0.000 0.103 0.000 0.435 0.237 0.000 0.000 0.006 0.002 0.002 0.000 0.000 0.000 0.000 0.005 0.001 0.031 0.263 0.000 0.000 1.086 - 10.45 51.08 1991 0.000 0.000 0.000 0.000 0.095 0.000 0.397 0.217 0.000 0.000 0.005 0.002 0.002 0.000 0.000 0.000 0.000 0.005 0.001 0.027 0.241 0.000 0.000 0.992 - 10.45 51.08 1992 0.000 0.000 0.000 0.000 0.090 0.000 0.381 0.207 0.000 0.000 0.006 0.002 0.002 0.000 0.000 0.000 0.000 0.004 0.001 0.025 0.229 0.000 0.000 0.947 - 10.45 51.08 1993 0.000 0.000 0.000 0.000 0.095 0.000 0.410 0.218 0.000 0.000 0.005 0.002 0.002 0.000 0.000 0.000 0.000 0.005 0.001 0.027 0.242 0.000 0.000 1.008 - 10.45 51.08 1994 0.000 0.000 0.000 0.000 0.095 0.000 0.407 0.217 0.000 0.000 0.006 0.002 0.002 0.000 0.000 0.000 0.000 0.005 0.001 0.025 0.240 0.000 0.000 1.000 - 10.45 51.08 1995 0.000 0.000 0.000 0.000 0.090 0.000 0.381 0.207 0.000 0.000 0.005 0.002 0.002 0.000 0.000 0.000 0.000 0.004 0.001 0.023 0.228 0.000 0.000 0.943 - 10.45 51.08 1996 0.000 0.000 0.000 0.000 0.082 0.000 0.357 0.187 0.000 0.000 0.004 0.002 0.001 0.000 0.000 0.000 0.000 0.004 0.001 0.022 0.207 0.000 0.000 0.867 - 10.45 51.08 1997 0.000 0.000 0.000 0.000 0.091 0.000 0.405 0.208 0.000 0.000 0.005 0.002 0.002 0.000 0.000 0.000 0.000 0.004 0.001 0.021 0.231 0.000 0.000 0.970 - 10.45 51.08 1998 0.000 0.000 0.000 0.000 0.092 0.000 0.422 0.210 0.000 0.000 0.005 0.002 0.002 0.000 0.000 0.000 0.000 0.005 0.001 0.021 0.233 0.000 0.000 0.994 - 10.45 51.08 1999 0.000 0.000 0.000 0.000 0.096 0.000 0.442 0.219 0.000 0.000 0.006 0.002 0.002 0.000 0.000 0.000 0.000 0.005 0.001 0.022 0.244 0.000 0.000 1.037 - 10.45 51.08 2000 0.000 0.000 0.000 0.000 0.094 0.000 0.428 0.213 0.000 0.000 0.006 0.002 0.002 0.000 0.000 0.000 0.000 0.005 0.001 0.020 0.236 0.000 0.000 1.007 - 10.45 51.08 2001 0.000 0.000 0.000 0.000 0.092 0.000 0.429 0.211 0.000 0.000 0.006 0.002 0.002 0.000 0.000 0.000 0.000 0.005 0.001 0.020 0.234 0.000 0.000 1.001 - 10.45 51.08 2002 0.000 0.000 0.000 0.000 0.011 0.000 0.429 0.207 0.000 0.000 0.006 0.002 0.002 0.000 0.000 0.000 0.000 0.005 0.001 0.020 0.232 0.000 0.000 0.916 - 10.45 51.08 2003 0.000 0.000 0.000 0.000 0.011 0.000 0.439 0.222 0.000 0.000 0.007 0.003 0.002 0.000 0.000 0.000 0.000 0.005 0.001 0.020 0.247 0.000 0.000 0.957 - 10.45 51.08 2004 0.000 0.000 0.000 0.000 0.013 0.000 0.498 0.234 0.000 0.000 0.007 0.003 0.002 0.000 0.000 0.000 0.000 0.006 0.002 0.023 0.263 0.000 0.000 1.051 - 10.45 51.08 2005 0.000 0.000 0.000 0.000 0.013 0.000 0.487 0.235 0.000 0.000 0.007 0.003 0.002 0.000 0.000 0.000 0.000 0.006 0.002 0.022 0.263 0.000 0.000 1.040 - 10.45 51.08 2006 0.000 0.000 0.000 0.000 0.012 0.000 0.472 0.237 0.000 0.000 0.007 0.003 0.002 0.000 0.000 0.000 0.000 0.005 0.002 0.019 0.262 0.000 0.000 1.020 - 10.45 51.08 2007 0.000 0.000 0.000 0.000 0.012 0.000 0.495 0.248 0.000 0.000 0.009 0.003 0.003 0.000 0.000 0.000 0.000 0.006 0.002 0.021 0.278 0.000 0.000 1.076 - 10.45 51.08 2008 0.000 0.000 0.000 0.000 0.011 0.000 0.487 0.231 0.000 0.000 0.008 0.003 0.002 0.000 0.000 0.000 0.000 0.006 0.002 0.020 0.259 0.000 0.000 1.030 - 10.45 51.08 2009 0.000 0.000 0.000 0.000 0.012 0.000 0.502 0.231 0.000 0.000 0.008 0.003 0.002 0.000 0.000 0.000 0.000 0.006 0.002 0.021 0.255 0.000 0.000 1.042 - 10.45 51.08 2010 0.000 0.000 0.000 0.000 0.010 0.000 0.458 0.219 0.000 0.000 0.008 0.003 0.002 0.000 0.000 0.000 0.000 0.005 0.002 0.018 0.240 0.000 0.000 0.965 - 10.45 51.08 2011 0.000 0.000 0.000 0.000 0.013 0.000 0.552 0.249 0.000 0.000 0.009 0.003 0.003 0.000 0.000 0.000 0.000 0.006 0.002 0.022 0.266 0.000 0.000 1.126 - 10.45 51.08 2012 0.000 0.000 0.000 0.000 0.012 0.000 0.521 0.232 0.000 0.000 0.009 0.003 0.003 0.000 0.000 0.000 0.000 0.006 0.002 0.021 0.248 0.000 0.000 1.058 diff --git a/rLPJGUESS/inst/extdata/outputsForTests/run_estinterval/outDirectory/aiso.out b/rLPJGUESS/inst/extdata/outputsForTests/run_estinterval/outDirectory/aiso.out deleted file mode 100644 index 7d6e828..0000000 --- a/rLPJGUESS/inst/extdata/outputsForTests/run_estinterval/outDirectory/aiso.out +++ /dev/null @@ -1,63 +0,0 @@ - Lon Lat Year Abi_alb BES Bet_pen Bet_pub Car_bet Cor_ave Fag_syl Fra_exc Jun_oxy MRS Pic_abi Pic_sit Pin_syl Pin_hal Pop_tre Que_coc Que_ile Que_pub Que_rob Til_cor Ulm_gla C3_gr C4_gr Total - 10.45 51.08 1951 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1952 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1953 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1954 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1955 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1956 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1957 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1958 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1959 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1960 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1961 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1962 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1963 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1964 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1965 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1966 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1967 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1968 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1969 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1970 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1971 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1972 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1973 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1974 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1975 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1976 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1977 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1978 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1979 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1980 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1981 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1982 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1983 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1984 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1985 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1986 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1987 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1988 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1989 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1990 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1991 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1992 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1993 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1994 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1995 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1996 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1997 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1998 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1999 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 2000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 2001 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 2002 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 2003 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 2004 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 2005 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 2006 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 2007 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 2008 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 2009 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 2010 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 2011 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 2012 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 diff --git a/rLPJGUESS/inst/extdata/outputsForTests/run_estinterval/outDirectory/amon.out b/rLPJGUESS/inst/extdata/outputsForTests/run_estinterval/outDirectory/amon.out deleted file mode 100644 index 7d6e828..0000000 --- a/rLPJGUESS/inst/extdata/outputsForTests/run_estinterval/outDirectory/amon.out +++ /dev/null @@ -1,63 +0,0 @@ - Lon Lat Year Abi_alb BES Bet_pen Bet_pub Car_bet Cor_ave Fag_syl Fra_exc Jun_oxy MRS Pic_abi Pic_sit Pin_syl Pin_hal Pop_tre Que_coc Que_ile Que_pub Que_rob Til_cor Ulm_gla C3_gr C4_gr Total - 10.45 51.08 1951 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1952 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1953 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1954 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1955 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1956 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1957 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1958 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1959 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1960 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1961 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1962 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1963 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1964 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1965 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1966 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1967 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1968 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1969 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1970 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1971 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1972 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1973 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1974 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1975 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1976 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1977 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1978 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1979 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1980 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1981 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1982 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1983 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1984 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1985 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1986 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1987 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1988 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1989 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1990 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1991 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1992 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1993 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1994 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1995 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1996 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1997 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1998 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1999 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 2000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 2001 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 2002 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 2003 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 2004 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 2005 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 2006 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 2007 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 2008 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 2009 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 2010 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 2011 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 2012 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 diff --git a/rLPJGUESS/inst/extdata/outputsForTests/run_estinterval/outDirectory/anpp.out b/rLPJGUESS/inst/extdata/outputsForTests/run_estinterval/outDirectory/anpp.out deleted file mode 100644 index 177e574..0000000 --- a/rLPJGUESS/inst/extdata/outputsForTests/run_estinterval/outDirectory/anpp.out +++ /dev/null @@ -1,63 +0,0 @@ - Lon Lat Year Abi_alb BES Bet_pen Bet_pub Car_bet Cor_ave Fag_syl Fra_exc Jun_oxy MRS Pic_abi Pic_sit Pin_syl Pin_hal Pop_tre Que_coc Que_ile Que_pub Que_rob Til_cor Ulm_gla C3_gr C4_gr Total - 10.45 51.08 1951 0.000 0.001 0.005 0.006 0.048 0.000 0.109 0.164 0.000 0.000 0.002 0.002 0.001 0.000 0.000 0.000 0.000 0.006 0.011 0.022 0.133 0.000 0.000 0.509 - 10.45 51.08 1952 0.000 0.000 0.004 0.005 0.046 0.000 0.103 0.158 0.000 0.000 0.001 0.001 0.001 0.000 0.000 0.000 0.000 0.005 0.009 0.020 0.122 0.000 0.000 0.474 - 10.45 51.08 1953 0.000 0.000 0.005 0.006 0.051 0.000 0.122 0.173 0.000 0.000 0.001 0.001 0.001 0.000 0.000 0.000 0.000 0.007 0.010 0.023 0.138 0.000 0.000 0.539 - 10.45 51.08 1954 0.000 0.001 0.004 0.005 0.044 0.000 0.105 0.146 0.000 0.000 0.001 0.001 0.001 0.000 0.000 0.000 0.000 0.005 0.009 0.019 0.118 0.000 0.000 0.459 - 10.45 51.08 1955 0.000 0.000 0.003 0.005 0.042 0.000 0.103 0.139 0.000 0.000 0.001 0.001 0.001 0.000 0.000 0.000 0.000 0.005 0.008 0.018 0.111 0.000 0.000 0.437 - 10.45 51.08 1956 0.000 0.000 0.004 0.005 0.044 0.000 0.110 0.143 0.000 0.000 0.001 0.001 0.001 0.000 0.000 0.000 0.000 0.005 0.008 0.019 0.116 0.000 0.000 0.457 - 10.45 51.08 1957 0.000 0.000 0.003 0.005 0.046 0.000 0.114 0.150 0.000 0.000 0.001 0.001 0.001 0.000 0.000 0.000 0.000 0.005 0.008 0.020 0.120 0.000 0.000 0.474 - 10.45 51.08 1958 0.000 0.000 0.003 0.004 0.044 0.000 0.113 0.144 0.000 0.000 0.001 0.001 0.001 0.000 0.000 0.000 0.000 0.005 0.007 0.018 0.113 0.000 0.000 0.454 - 10.45 51.08 1959 0.000 0.000 0.003 0.005 0.051 0.000 0.130 0.170 0.000 0.000 0.001 0.001 0.001 0.000 0.000 0.000 0.000 0.005 0.008 0.020 0.133 0.000 0.000 0.529 - 10.45 51.08 1960 0.000 0.000 0.001 0.004 0.044 0.000 0.115 0.147 0.000 0.000 0.001 0.001 0.001 0.000 0.000 0.000 0.000 0.005 0.007 0.017 0.114 0.000 0.000 0.457 - 10.45 51.08 1961 0.000 0.000 0.001 0.004 0.045 0.000 0.122 0.149 0.000 0.000 0.001 0.001 0.001 0.000 0.000 0.000 0.000 0.005 0.005 0.018 0.116 0.000 0.000 0.468 - 10.45 51.08 1962 0.000 0.000 0.001 0.004 0.044 0.000 0.123 0.146 0.000 0.000 0.001 0.001 0.001 0.000 0.000 0.000 0.000 0.005 0.005 0.017 0.114 0.000 0.000 0.461 - 10.45 51.08 1963 0.000 0.000 0.001 0.000 0.045 0.000 0.125 0.152 0.000 0.000 0.001 0.001 0.001 0.000 0.000 0.000 0.000 0.004 0.002 0.015 0.116 0.000 0.000 0.464 - 10.45 51.08 1964 0.000 0.000 0.001 0.000 0.047 0.000 0.132 0.158 0.000 0.000 0.001 0.001 0.000 0.000 0.000 0.000 0.000 0.005 0.002 0.016 0.121 0.000 0.000 0.485 - 10.45 51.08 1965 0.000 0.000 0.001 0.000 0.043 0.000 0.124 0.142 0.000 0.000 0.001 0.001 0.001 0.000 0.000 0.000 0.000 0.004 0.002 0.016 0.110 0.000 0.000 0.445 - 10.45 51.08 1966 0.000 0.000 0.001 0.000 0.046 0.000 0.138 0.155 0.000 0.000 0.001 0.001 0.000 0.000 0.000 0.000 0.000 0.005 0.002 0.016 0.119 0.000 0.000 0.484 - 10.45 51.08 1967 0.000 0.000 0.001 0.000 0.042 0.000 0.123 0.141 0.000 0.000 0.001 0.001 0.001 0.000 0.000 0.000 0.000 0.004 0.002 0.014 0.108 0.000 0.000 0.436 - 10.45 51.08 1968 0.000 0.000 0.001 0.000 0.043 0.000 0.130 0.143 0.000 0.000 0.001 0.001 0.000 0.000 0.000 0.000 0.000 0.004 0.002 0.015 0.110 0.000 0.000 0.450 - 10.45 51.08 1969 0.000 0.000 0.001 0.000 0.041 0.000 0.121 0.136 0.000 0.000 0.001 0.000 0.000 0.000 0.000 0.000 0.000 0.004 0.002 0.013 0.103 0.000 0.000 0.422 - 10.45 51.08 1970 0.000 0.000 0.001 0.000 0.039 0.000 0.121 0.133 0.000 0.000 0.001 0.000 0.000 0.000 0.000 0.000 0.000 0.003 0.002 0.012 0.100 0.000 0.000 0.413 - 10.45 51.08 1971 0.000 0.000 0.001 0.000 0.042 0.000 0.127 0.142 0.000 0.000 0.001 0.001 0.000 0.000 0.000 0.000 0.000 0.004 0.002 0.013 0.105 0.000 0.000 0.438 - 10.45 51.08 1972 0.000 0.000 0.000 0.000 0.039 0.000 0.126 0.133 0.000 0.000 0.001 0.001 0.000 0.000 0.000 0.000 0.000 0.002 0.002 0.012 0.099 0.000 0.000 0.415 - 10.45 51.08 1973 0.000 0.000 0.000 0.000 0.037 0.000 0.121 0.128 0.000 0.000 0.001 0.001 0.000 0.000 0.000 0.000 0.000 0.002 0.002 0.011 0.095 0.000 0.000 0.398 - 10.45 51.08 1974 0.000 0.000 0.000 0.000 0.040 0.000 0.136 0.135 0.000 0.000 0.001 0.001 0.000 0.000 0.000 0.000 0.000 0.002 0.002 0.013 0.102 0.000 0.000 0.432 - 10.45 51.08 1975 0.000 0.000 0.000 0.000 0.036 0.000 0.119 0.123 0.000 0.000 0.001 0.001 0.000 0.000 0.000 0.000 0.000 0.002 0.002 0.011 0.092 0.000 0.000 0.385 - 10.45 51.08 1976 0.000 0.000 0.000 0.000 0.039 0.000 0.122 0.134 0.000 0.000 0.001 0.001 0.000 0.000 0.000 0.000 0.000 0.001 0.002 0.010 0.098 0.000 0.000 0.409 - 10.45 51.08 1977 0.000 0.000 0.000 0.000 0.040 0.000 0.139 0.093 0.000 0.000 0.001 0.001 0.001 0.000 0.000 0.000 0.000 0.002 0.002 0.013 0.103 0.000 0.000 0.395 - 10.45 51.08 1978 0.000 0.000 0.000 0.000 0.040 0.000 0.139 0.092 0.000 0.000 0.001 0.001 0.001 0.000 0.000 0.000 0.000 0.002 0.002 0.013 0.102 0.000 0.000 0.392 - 10.45 51.08 1979 0.000 0.000 0.000 0.000 0.038 0.000 0.130 0.085 0.000 0.000 0.002 0.001 0.001 0.000 0.000 0.000 0.000 0.002 0.002 0.013 0.095 0.000 0.000 0.368 - 10.45 51.08 1980 0.000 0.000 0.000 0.000 0.038 0.000 0.129 0.086 0.000 0.000 0.002 0.001 0.001 0.000 0.000 0.000 0.000 0.002 0.002 0.012 0.096 0.000 0.000 0.368 - 10.45 51.08 1981 0.000 0.000 0.000 0.000 0.042 0.000 0.154 0.095 0.000 0.000 0.002 0.001 0.001 0.000 0.000 0.000 0.000 0.002 0.003 0.014 0.107 0.000 0.000 0.421 - 10.45 51.08 1982 0.000 0.000 0.000 0.000 0.039 0.000 0.131 0.088 0.000 0.000 0.002 0.001 0.001 0.000 0.000 0.000 0.000 0.002 0.000 0.012 0.098 0.000 0.000 0.374 - 10.45 51.08 1983 0.000 0.000 0.000 0.000 0.043 0.000 0.152 0.099 0.000 0.000 0.002 0.001 0.001 0.000 0.000 0.000 0.000 0.002 0.000 0.012 0.110 0.000 0.000 0.422 - 10.45 51.08 1984 0.000 0.000 0.000 0.000 0.035 0.000 0.124 0.079 0.000 0.000 0.002 0.001 0.001 0.000 0.000 0.000 0.000 0.002 0.000 0.011 0.088 0.000 0.000 0.342 - 10.45 51.08 1985 0.000 0.000 0.000 0.000 0.043 0.000 0.160 0.098 0.000 0.000 0.002 0.001 0.001 0.000 0.000 0.000 0.000 0.002 0.000 0.013 0.109 0.000 0.000 0.430 - 10.45 51.08 1986 0.000 0.000 0.000 0.000 0.040 0.000 0.145 0.092 0.000 0.000 0.002 0.001 0.001 0.000 0.000 0.000 0.000 0.002 0.000 0.011 0.102 0.000 0.000 0.396 - 10.45 51.08 1987 0.000 0.000 0.000 0.000 0.040 0.000 0.147 0.090 0.000 0.000 0.002 0.001 0.001 0.000 0.000 0.000 0.000 0.002 0.000 0.012 0.100 0.000 0.000 0.395 - 10.45 51.08 1988 0.000 0.000 0.000 0.000 0.042 0.000 0.160 0.095 0.000 0.000 0.002 0.001 0.001 0.000 0.000 0.000 0.000 0.002 0.000 0.013 0.106 0.000 0.000 0.423 - 10.45 51.08 1989 0.000 0.000 0.000 0.000 0.047 0.000 0.182 0.107 0.000 0.000 0.003 0.001 0.001 0.000 0.000 0.000 0.000 0.003 0.000 0.014 0.120 0.000 0.000 0.478 - 10.45 51.08 1990 0.000 0.000 0.000 0.000 0.049 0.000 0.195 0.111 0.000 0.000 0.003 0.001 0.001 0.000 0.000 0.000 0.000 0.003 0.001 0.015 0.125 0.000 0.000 0.504 - 10.45 51.08 1991 0.000 0.000 0.000 0.000 0.043 0.000 0.167 0.097 0.000 0.000 0.003 0.001 0.001 0.000 0.000 0.000 0.000 0.002 0.000 0.012 0.109 0.000 0.000 0.434 - 10.45 51.08 1992 0.000 0.000 0.000 0.000 0.037 0.000 0.146 0.085 0.000 0.000 0.003 0.001 0.001 0.000 0.000 0.000 0.000 0.002 0.000 0.010 0.095 0.000 0.000 0.381 - 10.45 51.08 1993 0.000 0.000 0.000 0.000 0.044 0.000 0.178 0.100 0.000 0.000 0.003 0.001 0.001 0.000 0.000 0.000 0.000 0.002 0.001 0.012 0.112 0.000 0.000 0.453 - 10.45 51.08 1994 0.000 0.000 0.000 0.000 0.040 0.000 0.156 0.090 0.000 0.000 0.003 0.001 0.001 0.000 0.000 0.000 0.000 0.002 0.000 0.010 0.101 0.000 0.000 0.404 - 10.45 51.08 1995 0.000 0.000 0.000 0.000 0.039 0.000 0.147 0.089 0.000 0.000 0.002 0.001 0.001 0.000 0.000 0.000 0.000 0.002 0.000 0.009 0.098 0.000 0.000 0.389 - 10.45 51.08 1996 0.000 0.000 0.000 0.000 0.038 0.000 0.150 0.084 0.000 0.000 0.002 0.001 0.001 0.000 0.000 0.000 0.000 0.002 0.000 0.010 0.094 0.000 0.000 0.382 - 10.45 51.08 1997 0.000 0.000 0.000 0.000 0.041 0.000 0.168 0.092 0.000 0.000 0.003 0.001 0.001 0.000 0.000 0.000 0.000 0.002 0.001 0.009 0.103 0.000 0.000 0.420 - 10.45 51.08 1998 0.000 0.000 0.000 0.000 0.041 0.000 0.177 0.092 0.000 0.000 0.003 0.001 0.001 0.000 0.000 0.000 0.000 0.002 0.001 0.010 0.104 0.000 0.000 0.432 - 10.45 51.08 1999 0.000 0.000 0.000 0.000 0.042 0.000 0.184 0.096 0.000 0.000 0.003 0.001 0.001 0.000 0.000 0.000 0.000 0.002 0.001 0.010 0.109 0.000 0.000 0.449 - 10.45 51.08 2000 0.000 0.000 0.000 0.000 0.040 0.000 0.167 0.090 0.000 0.000 0.003 0.001 0.001 0.000 0.000 0.000 0.000 0.002 0.001 0.008 0.101 0.000 0.000 0.415 - 10.45 51.08 2001 0.000 0.000 0.000 0.000 0.041 0.000 0.176 0.092 0.000 0.000 0.003 0.001 0.001 0.000 0.000 0.000 0.000 0.002 0.001 0.009 0.104 0.000 0.000 0.430 - 10.45 51.08 2002 0.000 0.000 0.000 0.000 0.006 0.000 0.173 0.089 0.000 0.000 0.003 0.001 0.001 0.000 0.000 0.000 0.000 0.002 0.001 0.009 0.101 0.000 0.000 0.385 - 10.45 51.08 2003 0.000 0.000 0.000 0.000 0.006 0.000 0.168 0.096 0.000 0.000 0.003 0.001 0.001 0.000 0.000 0.000 0.000 0.002 0.001 0.008 0.108 0.000 0.000 0.394 - 10.45 51.08 2004 0.000 0.000 0.000 0.000 0.007 0.000 0.228 0.111 0.000 0.000 0.004 0.001 0.001 0.000 0.000 0.000 0.000 0.003 0.001 0.011 0.127 0.000 0.000 0.495 - 10.45 51.08 2005 0.000 0.000 0.000 0.000 0.007 0.000 0.209 0.108 0.000 0.000 0.003 0.001 0.001 0.000 0.000 0.000 0.000 0.003 0.001 0.010 0.122 0.000 0.000 0.465 - 10.45 51.08 2006 0.000 0.000 0.000 0.000 0.005 0.000 0.182 0.103 0.000 0.000 0.003 0.001 0.001 0.000 0.000 0.000 0.000 0.002 0.001 0.007 0.114 0.000 0.000 0.421 - 10.45 51.08 2007 0.000 0.000 0.000 0.000 0.006 0.000 0.202 0.113 0.000 0.000 0.005 0.002 0.001 0.000 0.000 0.000 0.000 0.003 0.001 0.009 0.128 0.000 0.000 0.471 - 10.45 51.08 2008 0.000 0.000 0.000 0.000 0.006 0.000 0.199 0.100 0.000 0.000 0.004 0.001 0.001 0.000 0.000 0.000 0.000 0.003 0.001 0.009 0.114 0.000 0.000 0.438 - 10.45 51.08 2009 0.000 0.000 0.000 0.000 0.006 0.000 0.207 0.100 0.000 0.000 0.004 0.001 0.001 0.000 0.000 0.000 0.000 0.003 0.001 0.010 0.112 0.000 0.000 0.445 - 10.45 51.08 2010 0.000 0.000 0.000 0.000 0.005 0.000 0.185 0.097 0.000 0.000 0.004 0.001 0.001 0.000 0.000 0.000 0.000 0.002 0.001 0.008 0.107 0.000 0.000 0.410 - 10.45 51.08 2011 0.000 0.000 0.000 0.000 0.007 0.000 0.237 0.111 0.000 0.000 0.005 0.002 0.001 0.000 0.000 0.000 0.000 0.003 0.001 0.011 0.120 0.000 0.000 0.498 - 10.45 51.08 2012 0.000 0.000 0.000 0.000 0.006 0.000 0.212 0.099 0.000 0.000 0.005 0.002 0.001 0.000 0.000 0.000 0.000 0.003 0.001 0.009 0.107 0.000 0.000 0.445 diff --git a/rLPJGUESS/inst/extdata/outputsForTests/run_estinterval/outDirectory/cflux.out b/rLPJGUESS/inst/extdata/outputsForTests/run_estinterval/outDirectory/cflux.out deleted file mode 100644 index 188571a..0000000 --- a/rLPJGUESS/inst/extdata/outputsForTests/run_estinterval/outDirectory/cflux.out +++ /dev/null @@ -1,63 +0,0 @@ - Lon Lat Year Veg Repr Soil Fire Est NEE - 10.45 51.08 1951 -0.509 0.051 0.315 0.003 0.000 -0.14108 - 10.45 51.08 1952 -0.474 0.047 0.329 0.017 0.000 -0.08148 - 10.45 51.08 1953 -0.539 0.054 0.368 0.006 0.000 -0.11142 - 10.45 51.08 1954 -0.459 0.046 0.299 0.002 0.000 -0.11221 - 10.45 51.08 1955 -0.437 0.044 0.277 0.002 0.000 -0.11375 - 10.45 51.08 1956 -0.457 0.046 0.270 0.002 0.000 -0.13893 - 10.45 51.08 1957 -0.474 0.047 0.311 0.002 0.000 -0.11315 - 10.45 51.08 1958 -0.454 0.045 0.299 0.002 0.000 -0.10675 - 10.45 51.08 1959 -0.529 0.053 0.343 0.018 0.000 -0.11489 - 10.45 51.08 1960 -0.457 0.046 0.278 0.002 0.000 -0.13166 - 10.45 51.08 1961 -0.468 0.047 0.321 0.005 0.000 -0.09565 - 10.45 51.08 1962 -0.461 0.046 0.278 0.006 0.000 -0.13129 - 10.45 51.08 1963 -0.464 0.046 0.273 0.002 0.000 -0.14197 - 10.45 51.08 1964 -0.485 0.048 0.309 0.003 0.000 -0.12477 - 10.45 51.08 1965 -0.445 0.044 0.247 0.002 0.000 -0.15124 - 10.45 51.08 1966 -0.484 0.048 0.268 0.002 0.000 -0.16564 - 10.45 51.08 1967 -0.436 0.044 0.286 0.002 0.000 -0.10500 - 10.45 51.08 1968 -0.450 0.045 0.274 0.002 0.000 -0.12926 - 10.45 51.08 1969 -0.422 0.042 0.264 0.007 0.000 -0.10896 - 10.45 51.08 1970 -0.413 0.041 0.251 0.002 0.000 -0.11856 - 10.45 51.08 1971 -0.438 0.044 0.299 0.012 0.000 -0.08295 - 10.45 51.08 1972 -0.415 0.042 0.223 0.002 0.000 -0.14866 - 10.45 51.08 1973 -0.398 0.040 0.282 0.003 0.000 -0.07378 - 10.45 51.08 1974 -0.432 0.043 0.243 0.002 0.000 -0.14416 - 10.45 51.08 1975 -0.385 0.039 0.280 0.004 0.000 -0.06223 - 10.45 51.08 1976 -0.409 0.041 0.284 0.011 -0.000 -0.07337 - 10.45 51.08 1977 -0.395 0.039 0.241 0.002 0.000 -0.11150 - 10.45 51.08 1978 -0.392 0.039 0.257 0.002 0.000 -0.09283 - 10.45 51.08 1979 -0.368 0.037 0.262 0.002 0.000 -0.06688 - 10.45 51.08 1980 -0.368 0.037 0.259 0.002 0.000 -0.06971 - 10.45 51.08 1981 -0.421 0.042 0.248 0.002 0.000 -0.12824 - 10.45 51.08 1982 -0.374 0.037 0.325 0.014 0.000 0.00275 - 10.45 51.08 1983 -0.422 0.042 0.277 0.005 0.000 -0.09786 - 10.45 51.08 1984 -0.342 0.034 0.205 0.002 0.000 -0.10108 - 10.45 51.08 1985 -0.430 0.043 0.263 0.002 0.000 -0.12195 - 10.45 51.08 1986 -0.396 0.040 0.241 0.002 0.000 -0.11427 - 10.45 51.08 1987 -0.395 0.039 0.203 0.002 0.000 -0.15074 - 10.45 51.08 1988 -0.423 0.042 0.283 0.004 0.000 -0.09395 - 10.45 51.08 1989 -0.478 0.048 0.275 0.005 0.000 -0.15009 - 10.45 51.08 1990 -0.504 0.050 0.258 0.007 0.000 -0.18744 - 10.45 51.08 1991 -0.434 0.043 0.262 0.005 -0.000 -0.12459 - 10.45 51.08 1992 -0.381 0.038 0.254 0.002 0.000 -0.08652 - 10.45 51.08 1993 -0.453 0.045 0.225 0.002 0.000 -0.18024 - 10.45 51.08 1994 -0.404 0.040 0.250 0.001 0.000 -0.11267 - 10.45 51.08 1995 -0.389 0.039 0.229 0.001 0.000 -0.12033 - 10.45 51.08 1996 -0.382 0.038 0.194 0.001 0.000 -0.14843 - 10.45 51.08 1997 -0.420 0.042 0.255 0.002 0.000 -0.12093 - 10.45 51.08 1998 -0.432 0.043 0.236 0.001 0.000 -0.15145 - 10.45 51.08 1999 -0.449 0.045 0.247 0.001 0.000 -0.15553 - 10.45 51.08 2000 -0.415 0.041 0.250 0.001 0.000 -0.12186 - 10.45 51.08 2001 -0.430 0.043 0.233 0.002 -0.000 -0.15213 - 10.45 51.08 2002 -0.385 0.039 0.245 0.002 0.000 -0.09946 - 10.45 51.08 2003 -0.394 0.039 0.307 0.013 0.000 -0.03474 - 10.45 51.08 2004 -0.495 0.049 0.265 0.003 0.000 -0.17747 - 10.45 51.08 2005 -0.465 0.047 0.256 0.002 0.000 -0.16021 - 10.45 51.08 2006 -0.421 0.042 0.266 0.002 -0.000 -0.11083 - 10.45 51.08 2007 -0.471 0.047 0.246 0.002 0.000 -0.17587 - 10.45 51.08 2008 -0.438 0.044 0.277 0.004 0.000 -0.11376 - 10.45 51.08 2009 -0.445 0.044 0.255 0.002 0.000 -0.14309 - 10.45 51.08 2010 -0.410 0.041 0.225 0.004 0.000 -0.13975 - 10.45 51.08 2011 -0.498 0.050 0.276 0.009 0.000 -0.16275 - 10.45 51.08 2012 -0.445 0.044 0.258 0.002 0.000 -0.14041 diff --git a/rLPJGUESS/inst/extdata/outputsForTests/run_estinterval/outDirectory/clitter.out b/rLPJGUESS/inst/extdata/outputsForTests/run_estinterval/outDirectory/clitter.out deleted file mode 100644 index f8fdcb0..0000000 --- a/rLPJGUESS/inst/extdata/outputsForTests/run_estinterval/outDirectory/clitter.out +++ /dev/null @@ -1,63 +0,0 @@ - Lon Lat Year Abi_alb BES Bet_pen Bet_pub Car_bet Cor_ave Fag_syl Fra_exc Jun_oxy MRS Pic_abi Pic_sit Pin_syl Pin_hal Pop_tre Que_coc Que_ile Que_pub Que_rob Til_cor Ulm_gla C3_gr C4_gr Total - 10.45 51.08 1951 0.000 0.000 0.003 0.003 0.021 0.000 0.045 0.070 0.000 0.000 0.001 0.001 0.001 0.000 0.000 0.000 0.000 0.004 0.008 0.011 0.089 0.000 0.000 0.259 - 10.45 51.08 1952 0.000 0.000 0.005 0.003 0.021 0.000 0.045 0.097 0.000 0.000 0.001 0.001 0.001 0.000 0.000 0.000 0.000 0.004 0.008 0.011 0.059 0.000 0.000 0.257 - 10.45 51.08 1953 0.000 0.000 0.004 0.003 0.021 0.000 0.046 0.098 0.000 0.000 0.001 0.001 0.001 0.000 0.000 0.000 0.000 0.004 0.006 0.011 0.060 0.000 0.000 0.257 - 10.45 51.08 1954 0.000 0.001 0.003 0.003 0.022 0.000 0.047 0.067 0.000 0.000 0.001 0.001 0.001 0.000 0.000 0.000 0.000 0.004 0.008 0.011 0.059 0.000 0.000 0.228 - 10.45 51.08 1955 0.000 0.001 0.003 0.003 0.021 0.000 0.048 0.095 0.000 0.000 0.001 0.001 0.001 0.000 0.000 0.000 0.000 0.004 0.006 0.011 0.060 0.000 0.000 0.254 - 10.45 51.08 1956 0.000 0.000 0.002 0.003 0.021 0.000 0.048 0.064 0.000 0.000 0.001 0.001 0.001 0.000 0.000 0.000 0.000 0.004 0.006 0.010 0.057 0.000 0.000 0.218 - 10.45 51.08 1957 0.000 0.000 0.002 0.003 0.021 0.000 0.049 0.064 0.000 0.000 0.001 0.001 0.001 0.000 0.000 0.000 0.000 0.004 0.005 0.010 0.086 0.000 0.000 0.246 - 10.45 51.08 1958 0.000 0.000 0.002 0.003 0.022 0.000 0.049 0.064 0.000 0.000 0.001 0.001 0.001 0.000 0.000 0.000 0.000 0.003 0.005 0.010 0.055 0.000 0.000 0.217 - 10.45 51.08 1959 0.000 0.000 0.029 0.003 0.020 0.000 0.050 0.063 0.000 0.000 0.001 0.001 0.001 0.000 0.000 0.000 0.000 0.003 0.005 0.010 0.054 0.000 0.000 0.239 - 10.45 51.08 1960 0.000 0.001 0.001 0.003 0.021 0.000 0.051 0.067 0.000 0.000 0.001 0.001 0.001 0.000 0.000 0.000 0.000 0.003 0.036 0.010 0.055 0.000 0.000 0.250 - 10.45 51.08 1961 0.000 0.000 0.001 0.002 0.021 0.000 0.051 0.064 0.000 0.000 0.001 0.001 0.001 0.000 0.000 0.000 0.000 0.003 0.003 0.010 0.054 0.000 0.000 0.213 - 10.45 51.08 1962 0.000 0.000 0.001 0.069 0.020 0.000 0.052 0.064 0.000 0.000 0.001 0.001 0.000 0.000 0.000 0.000 0.000 0.003 0.036 0.011 0.054 0.000 0.000 0.312 - 10.45 51.08 1963 0.000 0.000 0.001 0.000 0.020 0.000 0.053 0.065 0.000 0.000 0.001 0.001 0.000 0.000 0.000 0.000 0.000 0.003 0.002 0.009 0.053 0.000 0.000 0.209 - 10.45 51.08 1964 0.000 0.001 0.001 0.000 0.020 0.000 0.055 0.064 0.000 0.000 0.001 0.001 0.000 0.000 0.000 0.000 0.000 0.003 0.002 0.009 0.053 0.000 0.000 0.209 - 10.45 51.08 1965 0.000 0.000 0.001 0.000 0.020 0.000 0.054 0.064 0.000 0.000 0.001 0.001 0.000 0.000 0.000 0.000 0.000 0.003 0.002 0.009 0.053 0.000 0.000 0.207 - 10.45 51.08 1966 0.000 0.000 0.001 0.000 0.020 0.000 0.054 0.063 0.000 0.000 0.001 0.001 0.000 0.000 0.000 0.000 0.000 0.003 0.002 0.009 0.052 0.000 0.000 0.206 - 10.45 51.08 1967 0.000 0.000 0.001 0.000 0.020 0.000 0.055 0.063 0.000 0.000 0.001 0.001 0.001 0.000 0.000 0.000 0.000 0.003 0.002 0.009 0.052 0.000 0.000 0.207 - 10.45 51.08 1968 0.000 0.000 0.001 0.000 0.020 0.000 0.056 0.063 0.000 0.000 0.001 0.001 0.000 0.000 0.000 0.000 0.000 0.003 0.001 0.008 0.051 0.000 0.000 0.205 - 10.45 51.08 1969 0.000 0.000 0.001 0.000 0.020 0.000 0.056 0.062 0.000 0.000 0.001 0.001 0.000 0.000 0.000 0.000 0.000 0.003 0.001 0.008 0.051 0.000 0.000 0.203 - 10.45 51.08 1970 0.000 0.000 0.001 0.000 0.019 0.000 0.056 0.062 0.000 0.000 0.001 0.000 0.000 0.000 0.000 0.000 0.000 0.003 0.001 0.008 0.086 0.000 0.000 0.237 - 10.45 51.08 1971 0.000 0.000 0.028 0.000 0.019 0.000 0.056 0.060 0.000 0.000 0.001 0.000 0.000 0.000 0.000 0.000 0.000 0.038 0.001 0.008 0.048 0.000 0.000 0.260 - 10.45 51.08 1972 0.000 0.000 0.000 0.000 0.021 0.000 0.056 0.060 0.000 0.000 0.001 0.000 0.000 0.000 0.000 0.000 0.000 0.001 0.001 0.007 0.049 0.000 0.000 0.198 - 10.45 51.08 1973 0.000 0.000 0.000 0.000 0.019 0.000 0.056 0.060 0.000 0.000 0.001 0.000 0.000 0.000 0.000 0.000 0.000 0.001 0.001 0.007 0.047 0.000 0.000 0.192 - 10.45 51.08 1974 0.000 0.000 0.000 0.000 0.018 0.000 0.056 0.059 0.000 0.000 0.001 0.000 0.000 0.000 0.000 0.000 0.000 0.001 0.001 0.007 0.046 0.000 0.000 0.190 - 10.45 51.08 1975 0.000 0.000 0.000 0.000 0.018 0.000 0.057 0.058 0.000 0.000 0.001 0.000 0.000 0.000 0.000 0.000 0.000 0.001 0.001 0.007 0.046 0.000 0.000 0.190 - 10.45 51.08 1976 0.000 0.000 0.000 0.000 0.018 0.000 0.057 1.086 0.000 0.000 0.001 0.000 0.000 0.000 0.000 0.000 0.000 0.001 0.001 0.007 0.045 0.000 0.000 1.215 - 10.45 51.08 1977 0.000 0.000 0.000 0.000 0.018 0.000 0.057 0.039 0.000 0.000 0.001 0.000 0.000 0.000 0.000 0.000 0.000 0.001 0.001 0.006 0.044 0.000 0.000 0.168 - 10.45 51.08 1978 0.000 0.000 0.000 0.000 0.018 0.000 0.058 0.039 0.000 0.000 0.001 0.000 0.000 0.000 0.000 0.000 0.000 0.001 0.001 0.006 0.044 0.000 0.000 0.169 - 10.45 51.08 1979 0.000 0.000 0.000 0.000 0.018 0.000 0.058 0.039 0.000 0.000 0.001 0.001 0.000 0.000 0.000 0.000 0.000 0.001 0.001 0.006 0.044 0.000 0.000 0.170 - 10.45 51.08 1980 0.000 0.000 0.000 0.000 0.017 0.000 0.059 0.038 0.000 0.000 0.001 0.001 0.000 0.000 0.000 0.000 0.000 0.001 0.001 0.006 0.044 0.000 0.000 0.169 - 10.45 51.08 1981 0.000 0.000 0.000 0.000 0.017 0.000 0.059 0.038 0.000 0.000 0.001 0.001 0.000 0.000 0.000 0.000 0.000 0.001 0.043 0.006 0.044 0.000 0.000 0.210 - 10.45 51.08 1982 0.000 0.000 0.000 0.000 0.017 0.000 0.060 0.038 0.000 0.000 0.001 0.001 0.000 0.000 0.000 0.000 0.000 0.001 0.000 0.006 0.044 0.000 0.000 0.169 - 10.45 51.08 1983 0.000 0.000 0.000 0.000 0.017 0.000 0.061 0.038 0.000 0.000 0.001 0.001 0.000 0.000 0.000 0.000 0.000 0.001 0.000 0.006 0.044 0.000 0.000 0.170 - 10.45 51.08 1984 0.000 0.000 0.000 0.000 0.017 0.000 0.062 0.038 0.000 0.000 0.001 0.001 0.000 0.000 0.000 0.000 0.000 0.001 0.000 0.006 0.044 0.000 0.000 0.172 - 10.45 51.08 1985 0.000 0.000 0.000 0.000 0.017 0.000 0.061 0.038 0.000 0.000 0.001 0.001 0.001 0.000 0.000 0.000 0.000 0.001 0.000 0.006 0.043 0.000 0.000 0.170 - 10.45 51.08 1986 0.000 0.000 0.000 0.000 0.017 0.000 0.063 0.038 0.000 0.000 0.001 0.001 0.000 0.000 0.000 0.000 0.000 0.001 0.000 0.006 0.044 0.000 0.000 0.172 - 10.45 51.08 1987 0.000 0.000 0.000 0.000 0.017 0.000 0.063 0.038 0.000 0.000 0.001 0.001 0.000 0.000 0.000 0.000 0.000 0.001 0.000 0.006 0.044 0.000 0.000 0.172 - 10.45 51.08 1988 0.000 0.000 0.000 0.000 0.017 0.000 0.064 0.038 0.000 0.000 0.001 0.001 0.000 0.000 0.000 0.000 0.000 0.001 0.000 0.006 0.044 0.000 0.000 0.172 - 10.45 51.08 1989 0.000 0.000 0.000 0.000 0.017 0.000 0.065 0.038 0.000 0.000 0.002 0.001 0.001 0.000 0.000 0.000 0.000 0.001 0.000 0.006 0.044 0.000 0.000 0.174 - 10.45 51.08 1990 0.000 0.000 0.000 0.000 0.018 0.000 0.067 0.039 0.000 0.000 0.002 0.001 0.001 0.000 0.000 0.000 0.000 0.001 0.000 0.006 0.045 0.000 0.000 0.179 - 10.45 51.08 1991 0.000 0.000 0.000 0.000 0.018 0.000 0.070 0.039 0.000 0.000 0.002 0.001 0.001 0.000 0.000 0.000 0.000 0.001 0.000 0.006 0.046 0.000 0.000 0.185 - 10.45 51.08 1992 0.000 0.000 0.000 0.000 0.018 0.000 0.071 0.039 0.000 0.000 0.002 0.001 0.001 0.000 0.000 0.000 0.000 0.001 0.000 0.006 0.046 0.000 0.000 0.186 - 10.45 51.08 1993 0.000 0.000 0.000 0.000 0.018 0.000 0.070 0.039 0.000 0.000 0.002 0.001 0.001 0.000 0.000 0.000 0.000 0.001 0.000 0.006 0.045 0.000 0.000 0.183 - 10.45 51.08 1994 0.000 0.000 0.000 0.000 0.018 0.000 0.072 0.039 0.000 0.000 0.004 0.001 0.001 0.000 0.000 0.000 0.000 0.001 0.000 0.006 0.046 0.000 0.000 0.187 - 10.45 51.08 1995 0.000 0.000 0.000 0.000 0.018 0.000 0.072 0.039 0.000 0.000 0.002 0.001 0.001 0.000 0.000 0.000 0.000 0.001 0.000 0.006 0.045 0.000 0.000 0.184 - 10.45 51.08 1996 0.000 0.000 0.000 0.000 0.018 0.000 0.071 0.038 0.000 0.000 0.002 0.001 0.001 0.000 0.000 0.000 0.000 0.001 0.000 0.048 0.045 0.000 0.000 0.225 - 10.45 51.08 1997 0.000 0.000 0.000 0.000 0.017 0.000 0.071 0.038 0.000 0.000 0.002 0.001 0.001 0.000 0.000 0.000 0.000 0.001 0.000 0.005 0.044 0.000 0.000 0.179 - 10.45 51.08 1998 0.000 0.000 0.000 0.000 0.017 0.000 0.072 0.038 0.000 0.000 0.002 0.001 0.001 0.000 0.000 0.000 0.000 0.001 0.000 0.005 0.044 0.000 0.000 0.180 - 10.45 51.08 1999 0.000 0.000 0.000 0.000 0.017 0.000 0.073 0.038 0.000 0.000 0.002 0.001 0.001 0.000 0.000 0.000 0.000 0.001 0.000 0.005 0.044 0.000 0.000 0.182 - 10.45 51.08 2000 0.000 0.000 0.000 0.000 0.017 0.000 0.075 0.038 0.000 0.000 0.002 0.001 0.001 0.000 0.000 0.000 0.000 0.001 0.000 0.005 0.044 0.000 0.000 0.184 - 10.45 51.08 2001 0.000 0.000 0.000 0.000 1.310 0.000 0.075 0.037 0.000 0.000 0.002 0.001 0.001 0.000 0.000 0.000 0.000 0.001 0.000 0.005 0.044 0.000 0.000 1.476 - 10.45 51.08 2002 0.000 0.000 0.000 0.000 0.003 0.000 0.076 0.037 0.000 0.000 0.002 0.001 0.001 0.000 0.000 0.000 0.000 0.001 0.000 0.005 0.044 0.000 0.000 0.170 - 10.45 51.08 2003 0.000 0.000 0.000 0.000 0.003 0.000 0.077 0.037 0.000 0.000 0.002 0.001 0.001 0.000 0.000 0.000 0.000 0.001 0.000 0.004 0.044 0.000 0.000 0.170 - 10.45 51.08 2004 0.000 0.000 0.000 0.000 0.003 0.000 0.077 0.037 0.000 0.000 0.002 0.001 0.001 0.000 0.000 0.000 0.000 0.001 0.000 0.004 0.044 0.000 0.000 0.172 - 10.45 51.08 2005 0.000 0.000 0.000 0.000 0.003 0.000 0.081 0.038 0.000 0.000 0.002 0.001 0.001 0.000 0.000 0.000 0.000 0.001 0.000 0.005 0.045 0.000 0.000 0.178 - 10.45 51.08 2006 0.000 0.000 0.000 0.000 0.010 0.000 0.083 0.039 0.000 0.000 0.002 0.001 0.001 0.000 0.000 0.000 0.000 0.001 0.001 0.005 0.046 0.000 0.000 0.188 - 10.45 51.08 2007 0.000 0.000 0.000 0.000 0.003 0.000 0.083 0.039 0.000 0.000 0.002 0.001 0.001 0.000 0.000 0.000 0.000 0.001 0.001 0.004 0.046 0.000 0.000 0.182 - 10.45 51.08 2008 0.000 0.000 0.000 0.000 0.003 0.000 0.084 0.040 0.000 0.000 0.003 0.001 0.001 0.000 0.000 0.000 0.000 0.001 0.001 0.004 0.111 0.000 0.000 0.249 - 10.45 51.08 2009 0.000 0.000 0.000 0.000 0.003 0.000 0.085 0.040 0.000 0.000 0.003 0.001 0.001 0.000 0.000 0.000 0.000 0.001 0.001 0.004 0.046 0.000 0.000 0.185 - 10.45 51.08 2010 0.000 0.000 0.000 0.000 0.003 0.000 0.087 0.040 0.000 0.000 0.003 0.001 0.001 0.000 0.000 0.000 0.000 0.001 0.001 0.004 0.120 0.000 0.000 0.261 - 10.45 51.08 2011 0.000 0.000 0.000 0.000 0.003 0.000 0.087 0.040 0.000 0.000 0.003 0.001 0.001 0.000 0.000 0.000 0.000 0.001 0.001 0.004 0.043 0.000 0.000 0.184 - 10.45 51.08 2012 0.000 0.000 0.000 0.000 0.003 0.000 0.090 0.040 0.000 0.000 0.003 0.001 0.001 0.000 0.000 0.000 0.000 0.002 0.001 0.004 0.044 0.000 0.000 0.189 diff --git a/rLPJGUESS/inst/extdata/outputsForTests/run_estinterval/outDirectory/cmass.out b/rLPJGUESS/inst/extdata/outputsForTests/run_estinterval/outDirectory/cmass.out deleted file mode 100644 index 21c3c88..0000000 --- a/rLPJGUESS/inst/extdata/outputsForTests/run_estinterval/outDirectory/cmass.out +++ /dev/null @@ -1,63 +0,0 @@ - Lon Lat Year Abi_alb BES Bet_pen Bet_pub Car_bet Cor_ave Fag_syl Fra_exc Jun_oxy MRS Pic_abi Pic_sit Pin_syl Pin_hal Pop_tre Que_coc Que_ile Que_pub Que_rob Til_cor Ulm_gla C3_gr C4_gr Total - 10.45 51.08 1951 0.000 0.003 0.050 0.048 0.462 0.000 0.958 1.613 0.000 0.000 0.007 0.008 0.006 0.000 0.000 0.000 0.000 0.052 0.083 0.209 1.234 0.000 0.000 4.733 - 10.45 51.08 1952 0.000 0.003 0.049 0.049 0.482 0.000 1.004 1.658 0.000 0.000 0.007 0.008 0.006 0.000 0.000 0.000 0.000 0.053 0.083 0.216 1.285 0.000 0.000 4.903 - 10.45 51.08 1953 0.000 0.003 0.049 0.052 0.506 0.000 1.068 1.716 0.000 0.000 0.007 0.008 0.006 0.000 0.000 0.000 0.000 0.055 0.086 0.225 1.349 0.000 0.000 5.131 - 10.45 51.08 1954 0.000 0.003 0.049 0.053 0.524 0.000 1.116 1.780 0.000 0.000 0.007 0.008 0.006 0.000 0.000 0.000 0.000 0.056 0.086 0.232 1.395 0.000 0.000 5.316 - 10.45 51.08 1955 0.000 0.002 0.050 0.055 0.540 0.000 1.160 1.810 0.000 0.000 0.007 0.008 0.006 0.000 0.000 0.000 0.000 0.057 0.087 0.238 1.435 0.000 0.000 5.455 - 10.45 51.08 1956 0.000 0.002 0.051 0.056 0.558 0.000 1.211 1.874 0.000 0.000 0.007 0.008 0.006 0.000 0.000 0.000 0.000 0.058 0.089 0.244 1.483 0.000 0.000 5.648 - 10.45 51.08 1957 0.000 0.002 0.051 0.058 0.578 0.000 1.265 1.945 0.000 0.000 0.007 0.008 0.006 0.000 0.000 0.000 0.000 0.059 0.091 0.252 1.505 0.000 0.000 5.828 - 10.45 51.08 1958 0.000 0.002 0.052 0.060 0.595 0.000 1.318 2.011 0.000 0.000 0.007 0.008 0.006 0.000 0.000 0.000 0.000 0.060 0.092 0.258 1.552 0.000 0.000 6.019 - 10.45 51.08 1959 0.000 0.002 0.025 0.062 0.621 0.000 1.385 2.101 0.000 0.000 0.007 0.008 0.006 0.000 0.000 0.000 0.000 0.062 0.094 0.265 1.617 0.000 0.000 6.255 - 10.45 51.08 1960 0.000 0.001 0.026 0.063 0.640 0.000 1.437 2.167 0.000 0.000 0.007 0.008 0.006 0.000 0.000 0.000 0.000 0.063 0.064 0.271 1.664 0.000 0.000 6.416 - 10.45 51.08 1961 0.000 0.001 0.026 0.065 0.660 0.000 1.495 2.237 0.000 0.000 0.007 0.008 0.005 0.000 0.000 0.000 0.000 0.064 0.065 0.277 1.715 0.000 0.000 6.625 - 10.45 51.08 1962 0.000 0.001 0.026 0.000 0.678 0.000 1.554 2.305 0.000 0.000 0.007 0.008 0.005 0.000 0.000 0.000 0.000 0.065 0.034 0.282 1.764 0.000 0.000 6.728 - 10.45 51.08 1963 0.000 0.001 0.026 0.000 0.699 0.000 1.614 2.376 0.000 0.000 0.007 0.008 0.005 0.000 0.000 0.000 0.000 0.065 0.034 0.286 1.815 0.000 0.000 6.936 - 10.45 51.08 1964 0.000 0.000 0.027 0.000 0.721 0.000 1.678 2.454 0.000 0.000 0.007 0.008 0.005 0.000 0.000 0.000 0.000 0.066 0.035 0.291 1.871 0.000 0.000 7.163 - 10.45 51.08 1965 0.000 0.000 0.027 0.000 0.739 0.000 1.735 2.518 0.000 0.000 0.007 0.008 0.005 0.000 0.000 0.000 0.000 0.068 0.036 0.297 1.917 0.000 0.000 7.356 - 10.45 51.08 1966 0.000 0.000 0.027 0.000 0.760 0.000 1.804 2.594 0.000 0.000 0.007 0.008 0.005 0.000 0.000 0.000 0.000 0.069 0.036 0.303 1.972 0.000 0.000 7.586 - 10.45 51.08 1967 0.000 0.000 0.027 0.000 0.778 0.000 1.859 2.657 0.000 0.000 0.007 0.008 0.005 0.000 0.000 0.000 0.000 0.069 0.037 0.306 2.017 0.000 0.000 7.772 - 10.45 51.08 1968 0.000 0.000 0.028 0.000 0.797 0.000 1.920 2.724 0.000 0.000 0.007 0.008 0.005 0.000 0.000 0.000 0.000 0.070 0.037 0.312 2.064 0.000 0.000 7.972 - 10.45 51.08 1969 0.000 0.000 0.028 0.000 0.814 0.000 1.973 2.784 0.000 0.000 0.007 0.008 0.005 0.000 0.000 0.000 0.000 0.071 0.037 0.315 2.107 0.000 0.000 8.148 - 10.45 51.08 1970 0.000 0.000 0.028 0.000 0.830 0.000 2.026 2.841 0.000 0.000 0.007 0.008 0.005 0.000 0.000 0.000 0.000 0.071 0.038 0.318 2.111 0.000 0.000 8.282 - 10.45 51.08 1971 0.000 0.000 0.000 0.000 0.849 0.000 2.084 2.909 0.000 0.000 0.008 0.008 0.005 0.000 0.000 0.000 0.000 0.036 0.038 0.321 2.158 0.000 0.000 8.415 - 10.45 51.08 1972 0.000 0.000 0.000 0.000 0.863 0.000 2.141 2.968 0.000 0.000 0.008 0.008 0.005 0.000 0.000 0.000 0.000 0.036 0.038 0.325 2.198 0.000 0.000 8.590 - 10.45 51.08 1973 0.000 0.000 0.000 0.000 0.878 0.000 2.194 3.023 0.000 0.000 0.008 0.008 0.005 0.000 0.000 0.000 0.000 0.037 0.039 0.328 2.237 0.000 0.000 8.756 - 10.45 51.08 1974 0.000 0.000 0.000 0.000 0.895 0.000 2.260 3.086 0.000 0.000 0.008 0.008 0.005 0.000 0.000 0.000 0.000 0.037 0.039 0.333 2.282 0.000 0.000 8.955 - 10.45 51.08 1975 0.000 0.000 0.000 0.000 0.909 0.000 2.309 3.138 0.000 0.000 0.008 0.008 0.005 0.000 0.000 0.000 0.000 0.038 0.040 0.336 2.319 0.000 0.000 9.112 - 10.45 51.08 1976 0.000 0.000 0.000 0.000 0.927 0.000 2.363 2.173 0.000 0.000 0.009 0.008 0.005 0.000 0.000 0.000 0.000 0.038 0.040 0.338 2.363 0.000 0.000 8.264 - 10.45 51.08 1977 0.000 0.000 0.000 0.000 0.946 0.000 2.431 2.217 0.000 0.000 0.009 0.008 0.005 0.000 0.000 0.000 0.000 0.039 0.041 0.344 2.411 0.000 0.000 8.451 - 10.45 51.08 1978 0.000 0.000 0.000 0.000 0.964 0.000 2.498 2.261 0.000 0.000 0.009 0.009 0.005 0.000 0.000 0.000 0.000 0.039 0.042 0.349 2.458 0.000 0.000 8.634 - 10.45 51.08 1979 0.000 0.000 0.000 0.000 0.981 0.000 2.556 2.299 0.000 0.000 0.010 0.009 0.006 0.000 0.000 0.000 0.000 0.040 0.042 0.354 2.499 0.000 0.000 8.796 - 10.45 51.08 1980 0.000 0.000 0.000 0.000 0.998 0.000 2.613 2.338 0.000 0.000 0.010 0.009 0.006 0.000 0.000 0.000 0.000 0.041 0.043 0.358 2.542 0.000 0.000 8.958 - 10.45 51.08 1981 0.000 0.000 0.000 0.000 1.018 0.000 2.693 2.386 0.000 0.000 0.011 0.009 0.006 0.000 0.000 0.000 0.000 0.042 0.002 0.365 2.594 0.000 0.000 9.126 - 10.45 51.08 1982 0.000 0.000 0.000 0.000 1.036 0.000 2.750 2.427 0.000 0.000 0.011 0.009 0.006 0.000 0.000 0.000 0.000 0.042 0.003 0.369 2.638 0.000 0.000 9.293 - 10.45 51.08 1983 0.000 0.000 0.000 0.000 1.058 0.000 2.826 2.479 0.000 0.000 0.012 0.010 0.006 0.000 0.000 0.000 0.000 0.043 0.003 0.374 2.693 0.000 0.000 9.503 - 10.45 51.08 1984 0.000 0.000 0.000 0.000 1.071 0.000 2.876 2.511 0.000 0.000 0.012 0.010 0.007 0.000 0.000 0.000 0.000 0.044 0.003 0.377 2.729 0.000 0.000 9.639 - 10.45 51.08 1985 0.000 0.000 0.000 0.000 1.093 0.000 2.959 2.562 0.000 0.000 0.013 0.010 0.006 0.000 0.000 0.000 0.000 0.044 0.003 0.383 2.784 0.000 0.000 9.856 - 10.45 51.08 1986 0.000 0.000 0.000 0.000 1.112 0.000 3.027 2.607 0.000 0.000 0.013 0.010 0.006 0.000 0.000 0.000 0.000 0.045 0.003 0.386 2.832 0.000 0.000 10.041 - 10.45 51.08 1987 0.000 0.000 0.000 0.000 1.130 0.000 3.096 2.650 0.000 0.000 0.013 0.010 0.006 0.000 0.000 0.000 0.000 0.046 0.003 0.391 2.878 0.000 0.000 10.224 - 10.45 51.08 1988 0.000 0.000 0.000 0.000 1.151 0.000 3.176 2.698 0.000 0.000 0.014 0.010 0.006 0.000 0.000 0.000 0.000 0.047 0.003 0.397 2.930 0.000 0.000 10.432 - 10.45 51.08 1989 0.000 0.000 0.000 0.000 1.176 0.000 3.275 2.756 0.000 0.000 0.015 0.011 0.007 0.000 0.000 0.000 0.000 0.048 0.003 0.403 2.994 0.000 0.000 10.687 - 10.45 51.08 1990 0.000 0.000 0.000 0.000 1.202 0.000 3.383 2.817 0.000 0.000 0.016 0.011 0.007 0.000 0.000 0.000 0.000 0.049 0.004 0.410 3.062 0.000 0.000 10.961 - 10.45 51.08 1991 0.000 0.000 0.000 0.000 1.222 0.000 3.463 2.865 0.000 0.000 0.016 0.011 0.007 0.000 0.000 0.000 0.000 0.050 0.004 0.415 3.114 0.000 0.000 11.167 - 10.45 51.08 1992 0.000 0.000 0.000 0.000 1.237 0.000 3.524 2.902 0.000 0.000 0.017 0.012 0.007 0.000 0.000 0.000 0.000 0.050 0.004 0.418 3.153 0.000 0.000 11.325 - 10.45 51.08 1993 0.000 0.000 0.000 0.000 1.259 0.000 3.613 2.953 0.000 0.000 0.018 0.012 0.007 0.000 0.000 0.000 0.000 0.051 0.004 0.423 3.209 0.000 0.000 11.548 - 10.45 51.08 1994 0.000 0.000 0.000 0.000 1.277 0.000 3.682 2.995 0.000 0.000 0.016 0.012 0.008 0.000 0.000 0.000 0.000 0.052 0.004 0.426 3.254 0.000 0.000 11.725 - 10.45 51.08 1995 0.000 0.000 0.000 0.000 1.294 0.000 3.742 3.037 0.000 0.000 0.016 0.012 0.008 0.000 0.000 0.000 0.000 0.052 0.004 0.429 3.297 0.000 0.000 11.891 - 10.45 51.08 1996 0.000 0.000 0.000 0.000 1.310 0.000 3.806 3.074 0.000 0.000 0.017 0.012 0.008 0.000 0.000 0.000 0.000 0.053 0.004 0.389 3.337 0.000 0.000 12.010 - 10.45 51.08 1997 0.000 0.000 0.000 0.000 1.330 0.000 3.885 3.119 0.000 0.000 0.017 0.012 0.008 0.000 0.000 0.000 0.000 0.053 0.004 0.393 3.386 0.000 0.000 12.209 - 10.45 51.08 1998 0.000 0.000 0.000 0.000 1.349 0.000 3.973 3.164 0.000 0.000 0.018 0.012 0.008 0.000 0.000 0.000 0.000 0.054 0.005 0.397 3.436 0.000 0.000 12.417 - 10.45 51.08 1999 0.000 0.000 0.000 0.000 1.370 0.000 4.065 3.213 0.000 0.000 0.018 0.012 0.008 0.000 0.000 0.000 0.000 0.055 0.005 0.401 3.490 0.000 0.000 12.640 - 10.45 51.08 2000 0.000 0.000 0.000 0.000 1.389 0.000 4.141 3.257 0.000 0.000 0.019 0.013 0.009 0.000 0.000 0.000 0.000 0.056 0.005 0.404 3.537 0.000 0.000 12.830 - 10.45 51.08 2001 0.000 0.000 0.000 0.000 0.115 0.000 4.225 3.302 0.000 0.000 0.020 0.013 0.009 0.000 0.000 0.000 0.000 0.057 0.005 0.408 3.587 0.000 0.000 11.740 - 10.45 51.08 2002 0.000 0.000 0.000 0.000 0.118 0.000 4.304 3.345 0.000 0.000 0.020 0.013 0.009 0.000 0.000 0.000 0.000 0.058 0.005 0.411 3.634 0.000 0.000 11.917 - 10.45 51.08 2003 0.000 0.000 0.000 0.000 0.119 0.000 4.378 3.394 0.000 0.000 0.021 0.013 0.009 0.000 0.000 0.000 0.000 0.059 0.006 0.414 3.687 0.000 0.000 12.101 - 10.45 51.08 2004 0.000 0.000 0.000 0.000 0.123 0.000 4.506 3.456 0.000 0.000 0.022 0.014 0.010 0.000 0.000 0.000 0.000 0.060 0.006 0.420 3.757 0.000 0.000 12.374 - 10.45 51.08 2005 0.000 0.000 0.000 0.000 0.126 0.000 4.613 3.515 0.000 0.000 0.023 0.014 0.010 0.000 0.000 0.000 0.000 0.061 0.006 0.424 3.822 0.000 0.000 12.615 - 10.45 51.08 2006 0.000 0.000 0.000 0.000 0.121 0.000 4.695 3.569 0.000 0.000 0.023 0.014 0.010 0.000 0.000 0.000 0.000 0.062 0.007 0.426 3.878 0.000 0.000 12.806 - 10.45 51.08 2007 0.000 0.000 0.000 0.000 0.123 0.000 4.794 3.632 0.000 0.000 0.025 0.014 0.010 0.000 0.000 0.000 0.000 0.063 0.007 0.430 3.948 0.000 0.000 13.047 - 10.45 51.08 2008 0.000 0.000 0.000 0.000 0.125 0.000 4.889 3.683 0.000 0.000 0.026 0.015 0.011 0.000 0.000 0.000 0.000 0.064 0.007 0.434 3.939 0.000 0.000 13.192 - 10.45 51.08 2009 0.000 0.000 0.000 0.000 0.127 0.000 4.990 3.733 0.000 0.000 0.027 0.015 0.011 0.000 0.000 0.000 0.000 0.065 0.008 0.438 3.994 0.000 0.000 13.408 - 10.45 51.08 2010 0.000 0.000 0.000 0.000 0.129 0.000 5.070 3.780 0.000 0.000 0.027 0.015 0.011 0.000 0.000 0.000 0.000 0.066 0.008 0.440 3.970 0.000 0.000 13.516 - 10.45 51.08 2011 0.000 0.000 0.000 0.000 0.132 0.000 5.196 3.841 0.000 0.000 0.029 0.015 0.012 0.000 0.000 0.000 0.000 0.067 0.008 0.445 4.034 0.000 0.000 13.780 - 10.45 51.08 2012 0.000 0.000 0.000 0.000 0.134 0.000 5.297 3.889 0.000 0.000 0.030 0.016 0.012 0.000 0.000 0.000 0.000 0.068 0.009 0.449 4.086 0.000 0.000 13.991 diff --git a/rLPJGUESS/inst/extdata/outputsForTests/run_estinterval/outDirectory/cpool.out b/rLPJGUESS/inst/extdata/outputsForTests/run_estinterval/outDirectory/cpool.out deleted file mode 100644 index 5345529..0000000 --- a/rLPJGUESS/inst/extdata/outputsForTests/run_estinterval/outDirectory/cpool.out +++ /dev/null @@ -1,63 +0,0 @@ - Lon Lat Year VegC LitterC SoilC Total - 10.45 51.08 1951 4.733 3.048 10.766 18.547 - 10.45 51.08 1952 4.903 2.984 10.742 18.628 - 10.45 51.08 1953 5.131 2.907 10.702 18.740 - 10.45 51.08 1954 5.316 2.853 10.683 18.852 - 10.45 51.08 1955 5.455 2.838 10.673 18.966 - 10.45 51.08 1956 5.648 2.790 10.667 19.105 - 10.45 51.08 1957 5.828 2.743 10.647 19.218 - 10.45 51.08 1958 6.019 2.679 10.626 19.324 - 10.45 51.08 1959 6.255 2.596 10.589 19.439 - 10.45 51.08 1960 6.416 2.585 10.570 19.571 - 10.45 51.08 1961 6.625 2.501 10.541 19.667 - 10.45 51.08 1962 6.728 2.548 10.522 19.798 - 10.45 51.08 1963 6.936 2.495 10.509 19.940 - 10.45 51.08 1964 7.163 2.421 10.481 20.065 - 10.45 51.08 1965 7.356 2.390 10.470 20.216 - 10.45 51.08 1966 7.586 2.339 10.456 20.382 - 10.45 51.08 1967 7.772 2.281 10.434 20.487 - 10.45 51.08 1968 7.972 2.230 10.414 20.616 - 10.45 51.08 1969 8.148 2.180 10.397 20.725 - 10.45 51.08 1970 8.282 2.178 10.384 20.843 - 10.45 51.08 1971 8.415 2.157 10.354 20.926 - 10.45 51.08 1972 8.590 2.139 10.346 21.075 - 10.45 51.08 1973 8.756 2.071 10.322 21.149 - 10.45 51.08 1974 8.955 2.033 10.305 21.293 - 10.45 51.08 1975 9.112 1.968 10.276 21.355 - 10.45 51.08 1976 8.264 2.924 10.240 21.429 - 10.45 51.08 1977 8.451 2.849 10.240 21.540 - 10.45 51.08 1978 8.634 2.767 10.232 21.633 - 10.45 51.08 1979 8.796 2.686 10.218 21.700 - 10.45 51.08 1980 8.958 2.608 10.203 21.769 - 10.45 51.08 1981 9.126 2.582 10.190 21.898 - 10.45 51.08 1982 9.293 2.451 10.152 21.895 - 10.45 51.08 1983 9.503 2.367 10.123 21.993 - 10.45 51.08 1984 9.639 2.339 10.116 22.094 - 10.45 51.08 1985 9.856 2.263 10.097 22.216 - 10.45 51.08 1986 10.041 2.211 10.078 22.330 - 10.45 51.08 1987 10.224 2.184 10.073 22.481 - 10.45 51.08 1988 10.432 2.099 10.044 22.575 - 10.45 51.08 1989 10.687 2.026 10.011 22.725 - 10.45 51.08 1990 10.961 1.968 9.983 22.912 - 10.45 51.08 1991 11.167 1.914 9.956 23.037 - 10.45 51.08 1992 11.325 1.866 9.933 23.123 - 10.45 51.08 1993 11.548 1.835 9.921 23.304 - 10.45 51.08 1994 11.725 1.791 9.901 23.416 - 10.45 51.08 1995 11.891 1.758 9.887 23.537 - 10.45 51.08 1996 12.010 1.789 9.886 23.685 - 10.45 51.08 1997 12.209 1.729 9.868 23.806 - 10.45 51.08 1998 12.417 1.690 9.850 23.957 - 10.45 51.08 1999 12.640 1.645 9.828 24.113 - 10.45 51.08 2000 12.830 1.602 9.803 24.235 - 10.45 51.08 2001 11.740 2.861 9.786 24.387 - 10.45 51.08 2002 11.917 2.782 9.787 24.486 - 10.45 51.08 2003 12.101 2.651 9.770 24.521 - 10.45 51.08 2004 12.374 2.568 9.757 24.699 - 10.45 51.08 2005 12.615 2.498 9.747 24.859 - 10.45 51.08 2006 12.806 2.430 9.734 24.970 - 10.45 51.08 2007 13.047 2.370 9.728 25.146 - 10.45 51.08 2008 13.192 2.355 9.712 25.259 - 10.45 51.08 2009 13.408 2.293 9.702 25.402 - 10.45 51.08 2010 13.516 2.326 9.700 25.542 - 10.45 51.08 2011 13.780 2.238 9.688 25.705 - 10.45 51.08 2012 13.991 2.180 9.675 25.845 diff --git a/rLPJGUESS/inst/extdata/outputsForTests/run_estinterval/outDirectory/cton_leaf.out b/rLPJGUESS/inst/extdata/outputsForTests/run_estinterval/outDirectory/cton_leaf.out deleted file mode 100644 index 7cac4ae..0000000 --- a/rLPJGUESS/inst/extdata/outputsForTests/run_estinterval/outDirectory/cton_leaf.out +++ /dev/null @@ -1,63 +0,0 @@ - Lon Lat Year Abi_alb BES Bet_pen Bet_pub Car_bet Cor_ave Fag_syl Fra_exc Jun_oxy MRS Pic_abi Pic_sit Pin_syl Pin_hal Pop_tre Que_coc Que_ile Que_pub Que_rob Til_cor Ulm_gla C3_gr C4_gr Total - 10.45 51.08 1951 0.0 37.3 23.6 23.6 23.6 0.0 23.6 23.6 0.0 0.0 56.4 60.8 50.7 0.0 0.0 0.0 0.0 23.6 23.6 23.6 23.6 0.0 0.0 24.0 - 10.45 51.08 1952 0.0 37.3 23.6 23.6 23.6 0.0 23.6 23.6 0.0 0.0 56.4 60.8 50.7 0.0 0.0 0.0 0.0 23.6 23.6 23.6 23.6 0.0 0.0 23.9 - 10.45 51.08 1953 0.0 37.3 23.6 23.6 23.6 0.0 23.6 23.6 0.0 0.0 56.4 60.8 50.7 0.0 0.0 0.0 0.0 23.6 23.6 23.6 23.6 0.0 0.0 23.9 - 10.45 51.08 1954 0.0 37.3 23.6 23.6 23.6 0.0 23.6 23.6 0.0 0.0 56.4 60.8 50.7 0.0 0.0 0.0 0.0 23.6 23.6 23.6 23.6 0.0 0.0 23.9 - 10.45 51.08 1955 0.0 37.3 23.6 23.6 23.6 0.0 23.6 23.6 0.0 0.0 56.4 60.8 50.7 0.0 0.0 0.0 0.0 23.6 23.6 23.6 23.6 0.0 0.0 23.9 - 10.45 51.08 1956 0.0 37.3 23.6 23.6 23.6 0.0 23.6 23.6 0.0 0.0 56.4 60.8 50.7 0.0 0.0 0.0 0.0 23.6 23.6 23.6 23.6 0.0 0.0 23.9 - 10.45 51.08 1957 0.0 37.3 23.6 23.6 23.6 0.0 23.6 23.6 0.0 0.0 56.4 60.8 50.7 0.0 0.0 0.0 0.0 23.6 23.6 23.6 23.6 0.0 0.0 23.9 - 10.45 51.08 1958 0.0 37.3 23.6 23.6 23.6 0.0 23.6 23.6 0.0 0.0 56.4 60.8 50.7 0.0 0.0 0.0 0.0 23.6 23.6 23.6 23.6 0.0 0.0 23.9 - 10.45 51.08 1959 0.0 37.3 23.6 23.6 23.6 0.0 23.6 23.6 0.0 0.0 56.4 60.8 50.7 0.0 0.0 0.0 0.0 23.6 23.6 23.6 23.6 0.0 0.0 23.9 - 10.45 51.08 1960 0.0 37.3 23.6 23.6 23.6 0.0 23.6 23.6 0.0 0.0 56.4 60.8 50.7 0.0 0.0 0.0 0.0 23.6 23.6 23.6 23.6 0.0 0.0 23.9 - 10.45 51.08 1961 0.0 37.3 23.6 23.6 23.6 0.0 23.6 23.6 0.0 0.0 56.4 60.8 50.7 0.0 0.0 0.0 0.0 23.6 23.6 23.6 23.6 0.0 0.0 23.8 - 10.45 51.08 1962 0.0 37.3 23.6 0.0 23.6 0.0 23.6 23.6 0.0 0.0 56.4 60.8 50.7 0.0 0.0 0.0 0.0 23.6 23.6 23.6 23.6 0.0 0.0 23.8 - 10.45 51.08 1963 0.0 37.3 23.6 0.0 23.6 0.0 23.6 23.6 0.0 0.0 56.4 60.8 50.7 0.0 0.0 0.0 0.0 23.6 23.6 23.6 23.6 0.0 0.0 23.8 - 10.45 51.08 1964 0.0 0.0 23.6 0.0 23.6 0.0 23.6 23.6 0.0 0.0 56.4 60.8 50.7 0.0 0.0 0.0 0.0 23.6 23.6 23.6 23.6 0.0 0.0 23.8 - 10.45 51.08 1965 0.0 0.0 23.6 0.0 23.6 0.0 23.6 23.6 0.0 0.0 56.4 60.8 50.7 0.0 0.0 0.0 0.0 23.6 23.6 23.6 23.6 0.0 0.0 23.8 - 10.45 51.08 1966 0.0 0.0 23.6 0.0 23.6 0.0 23.6 23.6 0.0 0.0 56.4 60.8 50.7 0.0 0.0 0.0 0.0 23.6 23.6 23.6 23.6 0.0 0.0 23.8 - 10.45 51.08 1967 0.0 0.0 23.6 0.0 23.6 0.0 23.6 23.6 0.0 0.0 56.4 60.8 50.7 0.0 0.0 0.0 0.0 23.6 23.6 23.6 23.6 0.0 0.0 23.8 - 10.45 51.08 1968 0.0 0.0 23.6 0.0 23.6 0.0 23.6 23.6 0.0 0.0 56.4 60.8 50.7 0.0 0.0 0.0 0.0 23.6 23.6 23.6 23.6 0.0 0.0 23.8 - 10.45 51.08 1969 0.0 0.0 23.6 0.0 23.6 0.0 23.6 23.6 0.0 0.0 56.4 60.8 50.7 0.0 0.0 0.0 0.0 23.6 23.6 23.6 23.6 0.0 0.0 23.8 - 10.45 51.08 1970 0.0 0.0 23.6 0.0 23.6 0.0 23.6 23.6 0.0 0.0 56.4 60.8 50.7 0.0 0.0 0.0 0.0 23.6 23.6 23.6 23.6 0.0 0.0 23.8 - 10.45 51.08 1971 0.0 0.0 0.0 0.0 23.6 0.0 23.6 23.6 0.0 0.0 56.4 60.8 50.7 0.0 0.0 0.0 0.0 23.6 23.6 23.6 23.6 0.0 0.0 23.8 - 10.45 51.08 1972 0.0 0.0 0.0 0.0 23.6 0.0 23.6 23.6 0.0 0.0 56.4 60.8 50.7 0.0 0.0 0.0 0.0 23.6 23.6 23.6 23.6 0.0 0.0 23.8 - 10.45 51.08 1973 0.0 0.0 0.0 0.0 23.6 0.0 23.6 23.6 0.0 0.0 56.4 60.8 50.7 0.0 0.0 0.0 0.0 23.6 23.6 23.6 23.6 0.0 0.0 23.8 - 10.45 51.08 1974 0.0 0.0 0.0 0.0 23.6 0.0 23.6 23.6 0.0 0.0 56.4 60.8 50.7 0.0 0.0 0.0 0.0 23.6 23.6 23.6 23.6 0.0 0.0 23.8 - 10.45 51.08 1975 0.0 0.0 0.0 0.0 23.6 0.0 23.6 23.6 0.0 0.0 56.4 60.8 50.7 0.0 0.0 0.0 0.0 23.6 23.6 23.6 23.6 0.0 0.0 23.8 - 10.45 51.08 1976 0.0 0.0 0.0 0.0 23.6 0.0 23.6 23.6 0.0 0.0 56.4 60.8 50.7 0.0 0.0 0.0 0.0 23.6 23.6 23.6 23.6 0.0 0.0 23.8 - 10.45 51.08 1977 0.0 0.0 0.0 0.0 23.6 0.0 23.6 23.6 0.0 0.0 56.4 60.8 50.7 0.0 0.0 0.0 0.0 23.6 23.6 23.6 23.6 0.0 0.0 23.9 - 10.45 51.08 1978 0.0 0.0 0.0 0.0 23.6 0.0 23.6 23.6 0.0 0.0 56.4 60.8 50.7 0.0 0.0 0.0 0.0 23.6 23.6 23.6 23.6 0.0 0.0 23.9 - 10.45 51.08 1979 0.0 0.0 0.0 0.0 23.6 0.0 23.6 23.6 0.0 0.0 56.4 60.8 50.7 0.0 0.0 0.0 0.0 23.6 23.6 23.6 23.6 0.0 0.0 23.9 - 10.45 51.08 1980 0.0 0.0 0.0 0.0 23.6 0.0 23.6 23.6 0.0 0.0 56.4 60.8 50.7 0.0 0.0 0.0 0.0 23.6 23.6 23.6 23.6 0.0 0.0 23.9 - 10.45 51.08 1981 0.0 0.0 0.0 0.0 23.6 0.0 23.6 23.6 0.0 0.0 56.4 60.8 50.7 0.0 0.0 0.0 0.0 23.6 23.6 23.6 23.6 0.0 0.0 23.9 - 10.45 51.08 1982 0.0 0.0 0.0 0.0 23.6 0.0 23.6 23.6 0.0 0.0 56.4 60.8 50.7 0.0 0.0 0.0 0.0 23.6 23.6 23.6 23.6 0.0 0.0 23.9 - 10.45 51.08 1983 0.0 0.0 0.0 0.0 23.6 0.0 23.6 23.6 0.0 0.0 56.4 60.8 50.7 0.0 0.0 0.0 0.0 23.6 23.6 23.6 23.6 0.0 0.0 23.9 - 10.45 51.08 1984 0.0 0.0 0.0 0.0 23.6 0.0 23.6 23.6 0.0 0.0 56.4 60.8 50.7 0.0 0.0 0.0 0.0 23.6 23.6 23.6 23.6 0.0 0.0 24.0 - 10.45 51.08 1985 0.0 0.0 0.0 0.0 23.6 0.0 23.6 23.6 0.0 0.0 56.4 60.8 50.7 0.0 0.0 0.0 0.0 23.6 23.6 23.6 23.6 0.0 0.0 24.0 - 10.45 51.08 1986 0.0 0.0 0.0 0.0 23.6 0.0 23.6 23.6 0.0 0.0 56.4 60.8 50.7 0.0 0.0 0.0 0.0 23.6 23.6 23.6 23.6 0.0 0.0 24.0 - 10.45 51.08 1987 0.0 0.0 0.0 0.0 23.6 0.0 23.6 23.6 0.0 0.0 56.4 60.8 50.7 0.0 0.0 0.0 0.0 23.6 23.6 23.6 23.6 0.0 0.0 24.0 - 10.45 51.08 1988 0.0 0.0 0.0 0.0 23.6 0.0 23.6 23.6 0.0 0.0 56.4 60.8 50.7 0.0 0.0 0.0 0.0 23.6 23.6 23.6 23.6 0.0 0.0 24.0 - 10.45 51.08 1989 0.0 0.0 0.0 0.0 23.6 0.0 23.6 23.6 0.0 0.0 56.4 60.8 50.7 0.0 0.0 0.0 0.0 23.6 23.6 23.6 23.6 0.0 0.0 24.0 - 10.45 51.08 1990 0.0 0.0 0.0 0.0 23.6 0.0 23.6 23.6 0.0 0.0 56.4 60.8 50.7 0.0 0.0 0.0 0.0 23.6 23.6 23.6 23.6 0.0 0.0 24.0 - 10.45 51.08 1991 0.0 0.0 0.0 0.0 23.6 0.0 23.6 23.6 0.0 0.0 56.4 60.8 50.7 0.0 0.0 0.0 0.0 23.6 23.6 23.6 23.6 0.0 0.0 24.0 - 10.45 51.08 1992 0.0 0.0 0.0 0.0 23.6 0.0 23.6 23.6 0.0 0.0 56.4 60.8 50.7 0.0 0.0 0.0 0.0 23.6 23.6 23.6 23.6 0.0 0.0 24.1 - 10.45 51.08 1993 0.0 0.0 0.0 0.0 23.6 0.0 23.6 23.6 0.0 0.0 56.4 60.8 50.7 0.0 0.0 0.0 0.0 23.6 23.6 23.6 23.6 0.0 0.0 24.0 - 10.45 51.08 1994 0.0 0.0 0.0 0.0 23.6 0.0 23.6 23.6 0.0 0.0 56.4 60.8 50.7 0.0 0.0 0.0 0.0 23.6 23.6 23.6 23.6 0.0 0.0 24.0 - 10.45 51.08 1995 0.0 0.0 0.0 0.0 23.6 0.0 23.6 23.6 0.0 0.0 56.4 60.8 50.7 0.0 0.0 0.0 0.0 23.6 23.6 23.6 23.6 0.0 0.0 24.0 - 10.45 51.08 1996 0.0 0.0 0.0 0.0 23.6 0.0 23.6 23.6 0.0 0.0 56.4 60.8 50.7 0.0 0.0 0.0 0.0 23.6 23.6 23.6 23.6 0.0 0.0 24.0 - 10.45 51.08 1997 0.0 0.0 0.0 0.0 23.6 0.0 23.6 23.6 0.0 0.0 56.4 60.8 50.7 0.0 0.0 0.0 0.0 23.6 23.6 23.6 23.6 0.0 0.0 24.0 - 10.45 51.08 1998 0.0 0.0 0.0 0.0 23.6 0.0 23.6 23.6 0.0 0.0 56.4 60.8 50.7 0.0 0.0 0.0 0.0 23.6 23.6 23.6 23.6 0.0 0.0 24.0 - 10.45 51.08 1999 0.0 0.0 0.0 0.0 23.6 0.0 23.6 23.6 0.0 0.0 56.4 60.8 50.7 0.0 0.0 0.0 0.0 23.6 23.6 23.6 23.6 0.0 0.0 24.0 - 10.45 51.08 2000 0.0 0.0 0.0 0.0 23.6 0.0 23.6 23.6 0.0 0.0 56.4 60.8 50.7 0.0 0.0 0.0 0.0 23.6 23.6 23.6 23.6 0.0 0.0 24.1 - 10.45 51.08 2001 0.0 0.0 0.0 0.0 23.6 0.0 23.6 23.6 0.0 0.0 56.4 60.8 50.7 0.0 0.0 0.0 0.0 23.6 23.6 23.6 23.6 0.0 0.0 24.1 - 10.45 51.08 2002 0.0 0.0 0.0 0.0 23.6 0.0 23.6 23.6 0.0 0.0 56.4 60.8 50.7 0.0 0.0 0.0 0.0 23.6 23.6 23.6 23.6 0.0 0.0 24.1 - 10.45 51.08 2003 0.0 0.0 0.0 0.0 23.6 0.0 23.6 23.6 0.0 0.0 56.4 60.8 50.7 0.0 0.0 0.0 0.0 23.6 23.6 23.6 23.6 0.0 0.0 24.1 - 10.45 51.08 2004 0.0 0.0 0.0 0.0 23.6 0.0 23.6 23.6 0.0 0.0 56.4 60.8 50.7 0.0 0.0 0.0 0.0 23.6 23.6 23.6 23.6 0.0 0.0 24.1 - 10.45 51.08 2005 0.0 0.0 0.0 0.0 23.6 0.0 23.6 23.6 0.0 0.0 56.4 60.8 50.7 0.0 0.0 0.0 0.0 23.6 23.6 23.6 23.6 0.0 0.0 24.1 - 10.45 51.08 2006 0.0 0.0 0.0 0.0 23.6 0.0 23.6 23.6 0.0 0.0 56.4 60.8 50.7 0.0 0.0 0.0 0.0 23.6 23.6 23.6 23.6 0.0 0.0 24.1 - 10.45 51.08 2007 0.0 0.0 0.0 0.0 23.6 0.0 23.6 23.6 0.0 0.0 56.4 60.8 50.7 0.0 0.0 0.0 0.0 23.6 23.6 23.6 23.6 0.0 0.0 24.2 - 10.45 51.08 2008 0.0 0.0 0.0 0.0 23.6 0.0 23.6 23.6 0.0 0.0 56.4 60.8 50.7 0.0 0.0 0.0 0.0 23.6 23.6 23.6 23.6 0.0 0.0 24.2 - 10.45 51.08 2009 0.0 0.0 0.0 0.0 23.6 0.0 23.6 23.6 0.0 0.0 56.4 60.8 50.7 0.0 0.0 0.0 0.0 23.6 23.6 23.6 23.6 0.0 0.0 24.2 - 10.45 51.08 2010 0.0 0.0 0.0 0.0 23.6 0.0 23.6 23.6 0.0 0.0 56.4 60.8 50.7 0.0 0.0 0.0 0.0 23.6 23.6 23.6 23.6 0.0 0.0 24.2 - 10.45 51.08 2011 0.0 0.0 0.0 0.0 23.6 0.0 23.6 23.6 0.0 0.0 56.4 60.8 50.7 0.0 0.0 0.0 0.0 23.6 23.6 23.6 23.6 0.0 0.0 24.2 - 10.45 51.08 2012 0.0 0.0 0.0 0.0 23.6 0.0 23.6 23.6 0.0 0.0 56.4 60.8 50.7 0.0 0.0 0.0 0.0 23.6 23.6 23.6 23.6 0.0 0.0 24.2 diff --git a/rLPJGUESS/inst/extdata/outputsForTests/run_estinterval/outDirectory/dens.out b/rLPJGUESS/inst/extdata/outputsForTests/run_estinterval/outDirectory/dens.out deleted file mode 100644 index ef14502..0000000 --- a/rLPJGUESS/inst/extdata/outputsForTests/run_estinterval/outDirectory/dens.out +++ /dev/null @@ -1,63 +0,0 @@ - Lon Lat Year Abi_alb BES Bet_pen Bet_pub Car_bet Cor_ave Fag_syl Fra_exc Jun_oxy MRS Pic_abi Pic_sit Pin_syl Pin_hal Pop_tre Que_coc Que_ile Que_pub Que_rob Til_cor Ulm_gla C3_gr C4_gr Total - 10.45 51.08 1951 0.0000 0.0040 0.0050 0.0010 0.0070 0.0000 0.0140 0.0130 0.0000 0.0000 0.0010 0.0020 0.0000 0.0000 0.0000 0.0000 0.0000 0.0020 0.0060 0.0040 0.0160 0.0000 0.0000 0.0750 - 10.45 51.08 1952 0.0000 0.0040 0.0040 0.0010 0.0070 0.0000 0.0140 0.0120 0.0000 0.0000 0.0010 0.0020 0.0000 0.0000 0.0000 0.0000 0.0000 0.0020 0.0050 0.0040 0.0160 0.0000 0.0000 0.0720 - 10.45 51.08 1953 0.0000 0.0040 0.0030 0.0010 0.0070 0.0000 0.0140 0.0100 0.0000 0.0000 0.0010 0.0020 0.0000 0.0000 0.0000 0.0000 0.0000 0.0020 0.0050 0.0040 0.0150 0.0000 0.0000 0.0680 - 10.45 51.08 1954 0.0000 0.0030 0.0030 0.0010 0.0070 0.0000 0.0140 0.0100 0.0000 0.0000 0.0010 0.0020 0.0000 0.0000 0.0000 0.0000 0.0000 0.0020 0.0040 0.0040 0.0150 0.0000 0.0000 0.0660 - 10.45 51.08 1955 0.0000 0.0020 0.0030 0.0010 0.0070 0.0000 0.0140 0.0090 0.0000 0.0000 0.0010 0.0020 0.0000 0.0000 0.0000 0.0000 0.0000 0.0020 0.0040 0.0040 0.0140 0.0000 0.0000 0.0630 - 10.45 51.08 1956 0.0000 0.0020 0.0030 0.0010 0.0070 0.0000 0.0140 0.0090 0.0000 0.0000 0.0010 0.0020 0.0000 0.0000 0.0000 0.0000 0.0000 0.0020 0.0040 0.0040 0.0140 0.0000 0.0000 0.0630 - 10.45 51.08 1957 0.0000 0.0020 0.0030 0.0010 0.0070 0.0000 0.0140 0.0090 0.0000 0.0000 0.0010 0.0020 0.0000 0.0000 0.0000 0.0000 0.0000 0.0020 0.0040 0.0040 0.0130 0.0000 0.0000 0.0620 - 10.45 51.08 1958 0.0000 0.0020 0.0030 0.0010 0.0060 0.0000 0.0140 0.0090 0.0000 0.0000 0.0010 0.0020 0.0000 0.0000 0.0000 0.0000 0.0000 0.0020 0.0040 0.0040 0.0130 0.0000 0.0000 0.0610 - 10.45 51.08 1959 0.0000 0.0020 0.0010 0.0010 0.0060 0.0000 0.0140 0.0090 0.0000 0.0000 0.0010 0.0020 0.0000 0.0000 0.0000 0.0000 0.0000 0.0020 0.0040 0.0040 0.0130 0.0000 0.0000 0.0590 - 10.45 51.08 1960 0.0000 0.0010 0.0010 0.0010 0.0060 0.0000 0.0140 0.0080 0.0000 0.0000 0.0010 0.0020 0.0090 0.0000 0.0000 0.0000 0.0000 0.0020 0.0030 0.0040 0.0130 0.0000 0.0000 0.0650 - 10.45 51.08 1961 0.0000 0.0010 0.0010 0.0010 0.0060 0.0000 0.0140 0.0080 0.0000 0.0000 0.0010 0.0020 0.0080 0.0000 0.0000 0.0000 0.0000 0.0020 0.0030 0.0040 0.0130 0.0000 0.0000 0.0640 - 10.45 51.08 1962 0.0000 0.0010 0.0010 0.0000 0.0060 0.0000 0.0140 0.0080 0.0000 0.0000 0.0010 0.0020 0.0080 0.0000 0.0000 0.0000 0.0000 0.0020 0.0020 0.0030 0.0130 0.0000 0.0000 0.0610 - 10.45 51.08 1963 0.0000 0.0010 0.0010 0.0000 0.0060 0.0000 0.0140 0.0070 0.0000 0.0000 0.0010 0.0020 0.0080 0.0000 0.0000 0.0000 0.0000 0.0020 0.0020 0.0030 0.0130 0.0000 0.0000 0.0600 - 10.45 51.08 1964 0.0000 0.0000 0.0010 0.0000 0.0060 0.0000 0.0130 0.0070 0.0000 0.0000 0.0010 0.0020 0.0080 0.0000 0.0000 0.0000 0.0000 0.0020 0.0020 0.0030 0.0130 0.0000 0.0000 0.0580 - 10.45 51.08 1965 0.0000 0.0000 0.0010 0.0000 0.0060 0.0000 0.0130 0.0070 0.0000 0.0000 0.0010 0.0020 0.0080 0.0000 0.0000 0.0000 0.0000 0.0020 0.0020 0.0030 0.0130 0.0000 0.0000 0.0580 - 10.45 51.08 1966 0.0000 0.0000 0.0010 0.0000 0.0060 0.0000 0.0130 0.0070 0.0000 0.0000 0.0010 0.0020 0.0080 0.0000 0.0000 0.0000 0.0000 0.0020 0.0020 0.0030 0.0130 0.0000 0.0000 0.0580 - 10.45 51.08 1967 0.0000 0.0000 0.0010 0.0000 0.0060 0.0000 0.0130 0.0070 0.0000 0.0000 0.0010 0.0020 0.0070 0.0000 0.0000 0.0000 0.0000 0.0020 0.0020 0.0030 0.0130 0.0000 0.0000 0.0570 - 10.45 51.08 1968 0.0000 0.0000 0.0010 0.0000 0.0060 0.0000 0.0130 0.0070 0.0000 0.0000 0.0010 0.0020 0.0070 0.0000 0.0000 0.0000 0.0000 0.0020 0.0020 0.0030 0.0130 0.0000 0.0000 0.0570 - 10.45 51.08 1969 0.0000 0.0000 0.0010 0.0000 0.0060 0.0000 0.0130 0.0070 0.0000 0.0000 0.0010 0.0020 0.0070 0.0000 0.0000 0.0000 0.0000 0.0020 0.0020 0.0030 0.0130 0.0000 0.0000 0.0570 - 10.45 51.08 1970 0.0000 0.0000 0.0010 0.0000 0.0060 0.0000 0.0130 0.0070 0.0000 0.0000 0.0010 0.0020 0.0070 0.0000 0.0000 0.0000 0.0000 0.0020 0.0020 0.0030 0.0120 0.0000 0.0000 0.0560 - 10.45 51.08 1971 0.0000 0.0000 0.0000 0.0000 0.0060 0.0000 0.0130 0.0070 0.0000 0.0000 0.0010 0.0020 0.0070 0.0000 0.0000 0.0000 0.0000 0.0010 0.0020 0.0030 0.0120 0.0000 0.0000 0.0540 - 10.45 51.08 1972 0.0000 0.0000 0.0000 0.0000 0.0050 0.0000 0.0130 0.0070 0.0000 0.0000 0.0010 0.0020 0.0070 0.0000 0.0000 0.0000 0.0000 0.0010 0.0020 0.0030 0.0110 0.0000 0.0000 0.0520 - 10.45 51.08 1973 0.0000 0.0000 0.0000 0.0000 0.0050 0.0000 0.0130 0.0070 0.0000 0.0000 0.0010 0.0020 0.0070 0.0000 0.0000 0.0000 0.0000 0.0010 0.0020 0.0030 0.0110 0.0000 0.0000 0.0520 - 10.45 51.08 1974 0.0000 0.0000 0.0000 0.0000 0.0050 0.0000 0.0130 0.0070 0.0000 0.0000 0.0010 0.0020 0.0070 0.0000 0.0000 0.0000 0.0000 0.0010 0.0020 0.0030 0.0110 0.0000 0.0000 0.0520 - 10.45 51.08 1975 0.0000 0.0000 0.0000 0.0000 0.0050 0.0000 0.0130 0.0070 0.0000 0.0000 0.0010 0.0020 0.0070 0.0000 0.0000 0.0000 0.0000 0.0010 0.0020 0.0030 0.0110 0.0000 0.0000 0.0520 - 10.45 51.08 1976 0.0000 0.0000 0.0000 0.0000 0.0050 0.0000 0.0130 0.0060 0.0000 0.0000 0.0010 0.0020 0.0070 0.0000 0.0000 0.0000 0.0000 0.0010 0.0020 0.0030 0.0110 0.0000 0.0000 0.0510 - 10.45 51.08 1977 0.0000 0.0000 0.0000 0.0000 0.0050 0.0000 0.0130 0.0060 0.0000 0.0000 0.0010 0.0020 0.0070 0.0000 0.0000 0.0000 0.0000 0.0010 0.0020 0.0030 0.0110 0.0000 0.0000 0.0510 - 10.45 51.08 1978 0.0000 0.0000 0.0000 0.0000 0.0050 0.0000 0.0130 0.0060 0.0000 0.0000 0.0040 0.0020 0.0070 0.0000 0.0000 0.0000 0.0000 0.0010 0.0020 0.0030 0.0110 0.0000 0.0000 0.0540 - 10.45 51.08 1979 0.0000 0.0000 0.0000 0.0000 0.0050 0.0000 0.0130 0.0060 0.0000 0.0000 0.0040 0.0020 0.0070 0.0000 0.0000 0.0000 0.0000 0.0010 0.0020 0.0030 0.0110 0.0000 0.0000 0.0540 - 10.45 51.08 1980 0.0000 0.0000 0.0000 0.0000 0.0050 0.0000 0.0130 0.0060 0.0000 0.0000 0.0040 0.0020 0.0070 0.0000 0.0000 0.0000 0.0000 0.0010 0.0020 0.0030 0.0110 0.0000 0.0000 0.0540 - 10.45 51.08 1981 0.0000 0.0000 0.0000 0.0000 0.0050 0.0000 0.0130 0.0060 0.0000 0.0000 0.0040 0.0020 0.0070 0.0000 0.0000 0.0000 0.0000 0.0010 0.0010 0.0030 0.0110 0.0000 0.0000 0.0530 - 10.45 51.08 1982 0.0000 0.0000 0.0000 0.0000 0.0050 0.0000 0.0130 0.0060 0.0000 0.0000 0.0040 0.0020 0.0070 0.0000 0.0000 0.0000 0.0000 0.0010 0.0010 0.0030 0.0110 0.0000 0.0000 0.0530 - 10.45 51.08 1983 0.0000 0.0000 0.0000 0.0000 0.0050 0.0000 0.0130 0.0060 0.0000 0.0000 0.0040 0.0020 0.0070 0.0000 0.0000 0.0000 0.0000 0.0010 0.0010 0.0030 0.0110 0.0000 0.0000 0.0530 - 10.45 51.08 1984 0.0000 0.0000 0.0000 0.0000 0.0050 0.0000 0.0130 0.0060 0.0000 0.0000 0.0040 0.0020 0.0070 0.0000 0.0000 0.0000 0.0000 0.0010 0.0010 0.0030 0.0110 0.0000 0.0000 0.0530 - 10.45 51.08 1985 0.0000 0.0000 0.0000 0.0000 0.0050 0.0000 0.0130 0.0060 0.0000 0.0000 0.0040 0.0020 0.0060 0.0000 0.0000 0.0000 0.0000 0.0010 0.0010 0.0030 0.0110 0.0000 0.0000 0.0520 - 10.45 51.08 1986 0.0000 0.0000 0.0000 0.0000 0.0050 0.0000 0.0130 0.0060 0.0000 0.0000 0.0040 0.0020 0.0060 0.0000 0.0000 0.0000 0.0000 0.0010 0.0010 0.0030 0.0110 0.0000 0.0000 0.0520 - 10.45 51.08 1987 0.0000 0.0000 0.0000 0.0000 0.0050 0.0000 0.0130 0.0060 0.0000 0.0000 0.0040 0.0020 0.0060 0.0000 0.0000 0.0000 0.0000 0.0010 0.0010 0.0030 0.0110 0.0000 0.0000 0.0520 - 10.45 51.08 1988 0.0000 0.0000 0.0000 0.0000 0.0050 0.0000 0.0130 0.0060 0.0000 0.0000 0.0040 0.0020 0.0060 0.0000 0.0000 0.0000 0.0000 0.0010 0.0010 0.0030 0.0110 0.0000 0.0000 0.0520 - 10.45 51.08 1989 0.0000 0.0000 0.0000 0.0000 0.0050 0.0000 0.0130 0.0060 0.0000 0.0000 0.0040 0.0020 0.0060 0.0000 0.0000 0.0000 0.0000 0.0010 0.0010 0.0030 0.0110 0.0000 0.0000 0.0520 - 10.45 51.08 1990 0.0000 0.0000 0.0000 0.0000 0.0050 0.0000 0.0130 0.0060 0.0000 0.0000 0.0040 0.0020 0.0060 0.0000 0.0000 0.0000 0.0000 0.0010 0.0010 0.0030 0.0110 0.0000 0.0000 0.0520 - 10.45 51.08 1991 0.0000 0.0000 0.0000 0.0000 0.0050 0.0000 0.0130 0.0060 0.0000 0.0000 0.0040 0.0020 0.0060 0.0000 0.0000 0.0000 0.0000 0.0010 0.0010 0.0030 0.0110 0.0000 0.0000 0.0520 - 10.45 51.08 1992 0.0000 0.0000 0.0000 0.0000 0.0050 0.0000 0.0130 0.0060 0.0000 0.0000 0.0040 0.0020 0.0060 0.0000 0.0000 0.0000 0.0000 0.0010 0.0010 0.0030 0.0110 0.0000 0.0000 0.0520 - 10.45 51.08 1993 0.0000 0.0000 0.0000 0.0000 0.0050 0.0000 0.0130 0.0060 0.0000 0.0000 0.0040 0.0020 0.0060 0.0000 0.0000 0.0000 0.0000 0.0010 0.0010 0.0030 0.0110 0.0000 0.0000 0.0520 - 10.45 51.08 1994 0.0000 0.0000 0.0000 0.0000 0.0050 0.0000 0.0130 0.0060 0.0000 0.0000 0.0030 0.0020 0.0060 0.0000 0.0000 0.0000 0.0000 0.0010 0.0010 0.0030 0.0110 0.0000 0.0000 0.0510 - 10.45 51.08 1995 0.0000 0.0000 0.0000 0.0000 0.0050 0.0000 0.0130 0.0060 0.0000 0.0000 0.0030 0.0020 0.0060 0.0000 0.0000 0.0000 0.0000 0.0010 0.0010 0.0030 0.0110 0.0000 0.0000 0.0510 - 10.45 51.08 1996 0.0000 0.0000 0.0000 0.0000 0.0050 0.0000 0.0160 0.0060 0.0000 0.0000 0.0030 0.0020 0.0060 0.0000 0.0000 0.0000 0.0000 0.0010 0.0010 0.0020 0.0110 0.0000 0.0000 0.0530 - 10.45 51.08 1997 0.0000 0.0000 0.0000 0.0000 0.0050 0.0000 0.0160 0.0060 0.0000 0.0000 0.0030 0.0020 0.0060 0.0000 0.0000 0.0000 0.0000 0.0010 0.0010 0.0020 0.0110 0.0000 0.0000 0.0530 - 10.45 51.08 1998 0.0000 0.0000 0.0000 0.0000 0.0050 0.0000 0.0160 0.0060 0.0000 0.0000 0.0030 0.0020 0.0060 0.0000 0.0000 0.0000 0.0000 0.0010 0.0010 0.0020 0.0110 0.0000 0.0000 0.0530 - 10.45 51.08 1999 0.0000 0.0000 0.0000 0.0000 0.0050 0.0000 0.0160 0.0060 0.0000 0.0000 0.0030 0.0020 0.0060 0.0000 0.0000 0.0000 0.0000 0.0010 0.0010 0.0020 0.0110 0.0000 0.0000 0.0530 - 10.45 51.08 2000 0.0000 0.0000 0.0000 0.0000 0.0050 0.0000 0.0160 0.0060 0.0000 0.0000 0.0030 0.0020 0.0060 0.0000 0.0000 0.0000 0.0000 0.0010 0.0010 0.0020 0.0110 0.0000 0.0000 0.0530 - 10.45 51.08 2001 0.0000 0.0000 0.0000 0.0000 0.0040 0.0000 0.0160 0.0060 0.0000 0.0000 0.0030 0.0020 0.0060 0.0000 0.0000 0.0000 0.0000 0.0010 0.0010 0.0020 0.0110 0.0000 0.0000 0.0520 - 10.45 51.08 2002 0.0000 0.0000 0.0000 0.0000 0.0040 0.0000 0.0160 0.0060 0.0000 0.0000 0.0030 0.0020 0.0060 0.0000 0.0000 0.0000 0.0000 0.0010 0.0010 0.0020 0.0110 0.0000 0.0000 0.0520 - 10.45 51.08 2003 0.0000 0.0000 0.0000 0.0000 0.0040 0.0000 0.0160 0.0060 0.0000 0.0000 0.0030 0.0050 0.0060 0.0000 0.0000 0.0000 0.0000 0.0010 0.0010 0.0020 0.0110 0.0000 0.0000 0.0550 - 10.45 51.08 2004 0.0000 0.0000 0.0000 0.0000 0.0040 0.0000 0.0160 0.0060 0.0000 0.0000 0.0030 0.0050 0.0060 0.0000 0.0000 0.0000 0.0000 0.0010 0.0010 0.0020 0.0110 0.0000 0.0000 0.0550 - 10.45 51.08 2005 0.0000 0.0000 0.0000 0.0000 0.0040 0.0000 0.0160 0.0060 0.0000 0.0000 0.0030 0.0050 0.0060 0.0000 0.0000 0.0000 0.0000 0.0010 0.0010 0.0020 0.0110 0.0000 0.0000 0.0550 - 10.45 51.08 2006 0.0000 0.0000 0.0000 0.0000 0.0030 0.0000 0.0160 0.0060 0.0000 0.0000 0.0030 0.0050 0.0060 0.0000 0.0000 0.0000 0.0000 0.0010 0.0010 0.0020 0.0110 0.0000 0.0000 0.0540 - 10.45 51.08 2007 0.0000 0.0000 0.0000 0.0000 0.0030 0.0000 0.0160 0.0060 0.0000 0.0000 0.0040 0.0050 0.0060 0.0000 0.0000 0.0000 0.0000 0.0010 0.0010 0.0020 0.0110 0.0000 0.0000 0.0550 - 10.45 51.08 2008 0.0000 0.0000 0.0000 0.0000 0.0030 0.0000 0.0160 0.0060 0.0000 0.0000 0.0040 0.0050 0.0060 0.0000 0.0000 0.0000 0.0000 0.0010 0.0010 0.0020 0.0100 0.0000 0.0000 0.0540 - 10.45 51.08 2009 0.0000 0.0000 0.0000 0.0000 0.0030 0.0000 0.0160 0.0060 0.0000 0.0000 0.0040 0.0050 0.0060 0.0000 0.0000 0.0000 0.0000 0.0010 0.0010 0.0020 0.0100 0.0000 0.0000 0.0540 - 10.45 51.08 2010 0.0000 0.0000 0.0000 0.0000 0.0030 0.0000 0.0160 0.0060 0.0000 0.0000 0.0040 0.0050 0.0060 0.0000 0.0000 0.0000 0.0000 0.0010 0.0010 0.0020 0.0080 0.0000 0.0000 0.0520 - 10.45 51.08 2011 0.0000 0.0000 0.0000 0.0000 0.0030 0.0000 0.0170 0.0060 0.0000 0.0000 0.0040 0.0050 0.0060 0.0000 0.0000 0.0000 0.0000 0.0010 0.0010 0.0020 0.0080 0.0000 0.0000 0.0530 - 10.45 51.08 2012 0.0000 0.0000 0.0000 0.0000 0.0030 0.0000 0.0170 0.0060 0.0000 0.0000 0.0040 0.0050 0.0060 0.0000 0.0000 0.0000 0.0000 0.0010 0.0010 0.0020 0.0080 0.0000 0.0000 0.0530 diff --git a/rLPJGUESS/inst/extdata/outputsForTests/run_estinterval/outDirectory/firert.out b/rLPJGUESS/inst/extdata/outputsForTests/run_estinterval/outDirectory/firert.out deleted file mode 100644 index 345f1d7..0000000 --- a/rLPJGUESS/inst/extdata/outputsForTests/run_estinterval/outDirectory/firert.out +++ /dev/null @@ -1,63 +0,0 @@ - Lon Lat Year FireRT - 10.45 51.08 1951 1000.0 - 10.45 51.08 1952 149.6 - 10.45 51.08 1953 387.7 - 10.45 51.08 1954 1000.0 - 10.45 51.08 1955 1000.0 - 10.45 51.08 1956 1000.0 - 10.45 51.08 1957 1000.0 - 10.45 51.08 1958 1000.0 - 10.45 51.08 1959 121.7 - 10.45 51.08 1960 998.4 - 10.45 51.08 1961 441.9 - 10.45 51.08 1962 347.7 - 10.45 51.08 1963 1000.0 - 10.45 51.08 1964 688.7 - 10.45 51.08 1965 1000.0 - 10.45 51.08 1966 1000.0 - 10.45 51.08 1967 1000.0 - 10.45 51.08 1968 1000.0 - 10.45 51.08 1969 262.7 - 10.45 51.08 1970 1000.0 - 10.45 51.08 1971 143.1 - 10.45 51.08 1972 1000.0 - 10.45 51.08 1973 640.2 - 10.45 51.08 1974 1000.0 - 10.45 51.08 1975 366.3 - 10.45 51.08 1976 147.0 - 10.45 51.08 1977 1000.0 - 10.45 51.08 1978 1000.0 - 10.45 51.08 1979 1000.0 - 10.45 51.08 1980 952.0 - 10.45 51.08 1981 1000.0 - 10.45 51.08 1982 145.3 - 10.45 51.08 1983 408.5 - 10.45 51.08 1984 1000.0 - 10.45 51.08 1985 814.2 - 10.45 51.08 1986 1000.0 - 10.45 51.08 1987 1000.0 - 10.45 51.08 1988 468.6 - 10.45 51.08 1989 341.2 - 10.45 51.08 1990 224.1 - 10.45 51.08 1991 353.9 - 10.45 51.08 1992 680.3 - 10.45 51.08 1993 641.9 - 10.45 51.08 1994 1000.0 - 10.45 51.08 1995 1000.0 - 10.45 51.08 1996 1000.0 - 10.45 51.08 1997 653.8 - 10.45 51.08 1998 1000.0 - 10.45 51.08 1999 1000.0 - 10.45 51.08 2000 1000.0 - 10.45 51.08 2001 542.3 - 10.45 51.08 2002 1000.0 - 10.45 51.08 2003 175.9 - 10.45 51.08 2004 771.6 - 10.45 51.08 2005 893.1 - 10.45 51.08 2006 1000.0 - 10.45 51.08 2007 1000.0 - 10.45 51.08 2008 547.2 - 10.45 51.08 2009 1000.0 - 10.45 51.08 2010 439.6 - 10.45 51.08 2011 214.5 - 10.45 51.08 2012 1000.0 diff --git a/rLPJGUESS/inst/extdata/outputsForTests/run_estinterval/outDirectory/fpc.out b/rLPJGUESS/inst/extdata/outputsForTests/run_estinterval/outDirectory/fpc.out deleted file mode 100644 index 6755787..0000000 --- a/rLPJGUESS/inst/extdata/outputsForTests/run_estinterval/outDirectory/fpc.out +++ /dev/null @@ -1,63 +0,0 @@ - Lon Lat Year Abi_alb BES Bet_pen Bet_pub Car_bet Cor_ave Fag_syl Fra_exc Jun_oxy MRS Pic_abi Pic_sit Pin_syl Pin_hal Pop_tre Que_coc Que_ile Que_pub Que_rob Til_cor Ulm_gla C3_gr C4_gr Total - 10.45 51.08 1951 0.000 0.001 0.015 0.011 0.056 0.000 0.069 0.165 0.000 0.000 0.002 0.003 0.003 0.000 0.000 0.000 0.000 0.015 0.025 0.035 0.155 0.000 0.000 0.553 - 10.45 51.08 1952 0.000 0.001 0.013 0.011 0.056 0.000 0.069 0.157 0.000 0.000 0.002 0.003 0.002 0.000 0.000 0.000 0.000 0.014 0.024 0.035 0.154 0.000 0.000 0.542 - 10.45 51.08 1953 0.000 0.001 0.013 0.011 0.057 0.000 0.070 0.150 0.000 0.000 0.002 0.003 0.002 0.000 0.000 0.000 0.000 0.015 0.024 0.036 0.155 0.000 0.000 0.537 - 10.45 51.08 1954 0.000 0.001 0.012 0.011 0.056 0.000 0.070 0.149 0.000 0.000 0.002 0.003 0.002 0.000 0.000 0.000 0.000 0.015 0.023 0.036 0.154 0.000 0.000 0.534 - 10.45 51.08 1955 0.000 0.000 0.012 0.011 0.056 0.000 0.070 0.142 0.000 0.000 0.002 0.003 0.002 0.000 0.000 0.000 0.000 0.015 0.023 0.036 0.152 0.000 0.000 0.523 - 10.45 51.08 1956 0.000 0.000 0.012 0.011 0.056 0.000 0.070 0.141 0.000 0.000 0.002 0.003 0.002 0.000 0.000 0.000 0.000 0.014 0.023 0.036 0.152 0.000 0.000 0.522 - 10.45 51.08 1957 0.000 0.000 0.011 0.011 0.056 0.000 0.070 0.141 0.000 0.000 0.002 0.002 0.002 0.000 0.000 0.000 0.000 0.014 0.022 0.036 0.144 0.000 0.000 0.514 - 10.45 51.08 1958 0.000 0.000 0.011 0.011 0.055 0.000 0.070 0.141 0.000 0.000 0.002 0.002 0.002 0.000 0.000 0.000 0.000 0.014 0.022 0.036 0.144 0.000 0.000 0.511 - 10.45 51.08 1959 0.000 0.000 0.005 0.011 0.055 0.000 0.071 0.141 0.000 0.000 0.002 0.002 0.002 0.000 0.000 0.000 0.000 0.014 0.022 0.037 0.144 0.000 0.000 0.507 - 10.45 51.08 1960 0.000 0.000 0.005 0.011 0.054 0.000 0.070 0.140 0.000 0.000 0.002 0.002 0.002 0.000 0.000 0.000 0.000 0.014 0.015 0.037 0.143 0.000 0.000 0.496 - 10.45 51.08 1961 0.000 0.000 0.005 0.011 0.054 0.000 0.071 0.140 0.000 0.000 0.002 0.002 0.002 0.000 0.000 0.000 0.000 0.014 0.015 0.037 0.143 0.000 0.000 0.495 - 10.45 51.08 1962 0.000 0.000 0.005 0.000 0.054 0.000 0.071 0.140 0.000 0.000 0.002 0.002 0.002 0.000 0.000 0.000 0.000 0.014 0.008 0.036 0.142 0.000 0.000 0.475 - 10.45 51.08 1963 0.000 0.000 0.004 0.000 0.054 0.000 0.071 0.139 0.000 0.000 0.002 0.002 0.002 0.000 0.000 0.000 0.000 0.014 0.008 0.036 0.141 0.000 0.000 0.472 - 10.45 51.08 1964 0.000 0.000 0.004 0.000 0.054 0.000 0.070 0.139 0.000 0.000 0.002 0.002 0.002 0.000 0.000 0.000 0.000 0.014 0.008 0.036 0.141 0.000 0.000 0.470 - 10.45 51.08 1965 0.000 0.000 0.004 0.000 0.054 0.000 0.070 0.138 0.000 0.000 0.002 0.002 0.002 0.000 0.000 0.000 0.000 0.014 0.008 0.036 0.141 0.000 0.000 0.469 - 10.45 51.08 1966 0.000 0.000 0.004 0.000 0.054 0.000 0.071 0.138 0.000 0.000 0.002 0.002 0.001 0.000 0.000 0.000 0.000 0.014 0.008 0.036 0.141 0.000 0.000 0.470 - 10.45 51.08 1967 0.000 0.000 0.004 0.000 0.053 0.000 0.071 0.138 0.000 0.000 0.002 0.002 0.001 0.000 0.000 0.000 0.000 0.013 0.007 0.035 0.139 0.000 0.000 0.466 - 10.45 51.08 1968 0.000 0.000 0.004 0.000 0.053 0.000 0.071 0.138 0.000 0.000 0.002 0.002 0.001 0.000 0.000 0.000 0.000 0.013 0.007 0.035 0.139 0.000 0.000 0.465 - 10.45 51.08 1969 0.000 0.000 0.004 0.000 0.053 0.000 0.071 0.137 0.000 0.000 0.002 0.002 0.001 0.000 0.000 0.000 0.000 0.013 0.007 0.034 0.137 0.000 0.000 0.461 - 10.45 51.08 1970 0.000 0.000 0.003 0.000 0.052 0.000 0.071 0.136 0.000 0.000 0.002 0.002 0.001 0.000 0.000 0.000 0.000 0.013 0.007 0.034 0.129 0.000 0.000 0.451 - 10.45 51.08 1971 0.000 0.000 0.000 0.000 0.052 0.000 0.071 0.136 0.000 0.000 0.002 0.002 0.001 0.000 0.000 0.000 0.000 0.006 0.007 0.034 0.129 0.000 0.000 0.439 - 10.45 51.08 1972 0.000 0.000 0.000 0.000 0.051 0.000 0.071 0.136 0.000 0.000 0.002 0.002 0.001 0.000 0.000 0.000 0.000 0.006 0.007 0.033 0.127 0.000 0.000 0.436 - 10.45 51.08 1973 0.000 0.000 0.000 0.000 0.051 0.000 0.071 0.135 0.000 0.000 0.002 0.002 0.001 0.000 0.000 0.000 0.000 0.006 0.007 0.033 0.126 0.000 0.000 0.434 - 10.45 51.08 1974 0.000 0.000 0.000 0.000 0.051 0.000 0.072 0.135 0.000 0.000 0.002 0.002 0.001 0.000 0.000 0.000 0.000 0.006 0.007 0.033 0.126 0.000 0.000 0.435 - 10.45 51.08 1975 0.000 0.000 0.000 0.000 0.051 0.000 0.072 0.135 0.000 0.000 0.002 0.002 0.001 0.000 0.000 0.000 0.000 0.006 0.007 0.032 0.126 0.000 0.000 0.433 - 10.45 51.08 1976 0.000 0.000 0.000 0.000 0.050 0.000 0.072 0.095 0.000 0.000 0.002 0.002 0.001 0.000 0.000 0.000 0.000 0.006 0.006 0.031 0.124 0.000 0.000 0.391 - 10.45 51.08 1977 0.000 0.000 0.000 0.000 0.050 0.000 0.074 0.096 0.000 0.000 0.002 0.002 0.001 0.000 0.000 0.000 0.000 0.006 0.007 0.031 0.125 0.000 0.000 0.395 - 10.45 51.08 1978 0.000 0.000 0.000 0.000 0.051 0.000 0.075 0.096 0.000 0.000 0.003 0.002 0.001 0.000 0.000 0.000 0.000 0.006 0.007 0.031 0.126 0.000 0.000 0.398 - 10.45 51.08 1979 0.000 0.000 0.000 0.000 0.051 0.000 0.076 0.096 0.000 0.000 0.003 0.002 0.001 0.000 0.000 0.000 0.000 0.006 0.007 0.031 0.126 0.000 0.000 0.400 - 10.45 51.08 1980 0.000 0.000 0.000 0.000 0.051 0.000 0.077 0.096 0.000 0.000 0.003 0.002 0.002 0.000 0.000 0.000 0.000 0.006 0.007 0.031 0.127 0.000 0.000 0.402 - 10.45 51.08 1981 0.000 0.000 0.000 0.000 0.051 0.000 0.080 0.097 0.000 0.000 0.003 0.002 0.002 0.000 0.000 0.000 0.000 0.006 0.001 0.032 0.128 0.000 0.000 0.401 - 10.45 51.08 1982 0.000 0.000 0.000 0.000 0.051 0.000 0.081 0.097 0.000 0.000 0.003 0.002 0.002 0.000 0.000 0.000 0.000 0.006 0.001 0.031 0.128 0.000 0.000 0.402 - 10.45 51.08 1983 0.000 0.000 0.000 0.000 0.052 0.000 0.082 0.097 0.000 0.000 0.003 0.002 0.002 0.000 0.000 0.000 0.000 0.006 0.001 0.031 0.129 0.000 0.000 0.405 - 10.45 51.08 1984 0.000 0.000 0.000 0.000 0.051 0.000 0.083 0.097 0.000 0.000 0.003 0.002 0.002 0.000 0.000 0.000 0.000 0.006 0.001 0.031 0.128 0.000 0.000 0.405 - 10.45 51.08 1985 0.000 0.000 0.000 0.000 0.052 0.000 0.085 0.097 0.000 0.000 0.004 0.002 0.002 0.000 0.000 0.000 0.000 0.006 0.001 0.031 0.129 0.000 0.000 0.409 - 10.45 51.08 1986 0.000 0.000 0.000 0.000 0.052 0.000 0.086 0.097 0.000 0.000 0.004 0.002 0.002 0.000 0.000 0.000 0.000 0.006 0.001 0.031 0.129 0.000 0.000 0.410 - 10.45 51.08 1987 0.000 0.000 0.000 0.000 0.052 0.000 0.087 0.097 0.000 0.000 0.004 0.002 0.002 0.000 0.000 0.000 0.000 0.006 0.001 0.031 0.130 0.000 0.000 0.412 - 10.45 51.08 1988 0.000 0.000 0.000 0.000 0.052 0.000 0.089 0.098 0.000 0.000 0.004 0.002 0.002 0.000 0.000 0.000 0.000 0.007 0.001 0.031 0.131 0.000 0.000 0.417 - 10.45 51.08 1989 0.000 0.000 0.000 0.000 0.053 0.000 0.092 0.099 0.000 0.000 0.004 0.002 0.002 0.000 0.000 0.000 0.000 0.007 0.001 0.032 0.133 0.000 0.000 0.425 - 10.45 51.08 1990 0.000 0.000 0.000 0.000 0.054 0.000 0.095 0.100 0.000 0.000 0.004 0.003 0.002 0.000 0.000 0.000 0.000 0.007 0.001 0.032 0.135 0.000 0.000 0.434 - 10.45 51.08 1991 0.000 0.000 0.000 0.000 0.054 0.000 0.097 0.100 0.000 0.000 0.004 0.003 0.002 0.000 0.000 0.000 0.000 0.007 0.002 0.032 0.136 0.000 0.000 0.436 - 10.45 51.08 1992 0.000 0.000 0.000 0.000 0.054 0.000 0.098 0.100 0.000 0.000 0.005 0.003 0.002 0.000 0.000 0.000 0.000 0.007 0.002 0.031 0.135 0.000 0.000 0.436 - 10.45 51.08 1993 0.000 0.000 0.000 0.000 0.054 0.000 0.100 0.100 0.000 0.000 0.005 0.003 0.002 0.000 0.000 0.000 0.000 0.007 0.002 0.031 0.135 0.000 0.000 0.439 - 10.45 51.08 1994 0.000 0.000 0.000 0.000 0.054 0.000 0.101 0.100 0.000 0.000 0.004 0.003 0.002 0.000 0.000 0.000 0.000 0.007 0.002 0.031 0.135 0.000 0.000 0.438 - 10.45 51.08 1995 0.000 0.000 0.000 0.000 0.054 0.000 0.102 0.099 0.000 0.000 0.004 0.003 0.002 0.000 0.000 0.000 0.000 0.007 0.002 0.030 0.134 0.000 0.000 0.436 - 10.45 51.08 1996 0.000 0.000 0.000 0.000 0.053 0.000 0.102 0.099 0.000 0.000 0.004 0.003 0.002 0.000 0.000 0.000 0.000 0.007 0.002 0.024 0.133 0.000 0.000 0.430 - 10.45 51.08 1997 0.000 0.000 0.000 0.000 0.054 0.000 0.105 0.099 0.000 0.000 0.004 0.003 0.002 0.000 0.000 0.000 0.000 0.007 0.002 0.024 0.134 0.000 0.000 0.433 - 10.45 51.08 1998 0.000 0.000 0.000 0.000 0.054 0.000 0.107 0.100 0.000 0.000 0.004 0.003 0.002 0.000 0.000 0.000 0.000 0.007 0.002 0.024 0.135 0.000 0.000 0.438 - 10.45 51.08 1999 0.000 0.000 0.000 0.000 0.054 0.000 0.110 0.100 0.000 0.000 0.005 0.003 0.002 0.000 0.000 0.000 0.000 0.007 0.002 0.024 0.136 0.000 0.000 0.443 - 10.45 51.08 2000 0.000 0.000 0.000 0.000 0.054 0.000 0.112 0.100 0.000 0.000 0.005 0.003 0.002 0.000 0.000 0.000 0.000 0.007 0.002 0.024 0.136 0.000 0.000 0.444 - 10.45 51.08 2001 0.000 0.000 0.000 0.000 0.017 0.000 0.113 0.100 0.000 0.000 0.005 0.003 0.002 0.000 0.000 0.000 0.000 0.007 0.002 0.024 0.136 0.000 0.000 0.409 - 10.45 51.08 2002 0.000 0.000 0.000 0.000 0.017 0.000 0.116 0.100 0.000 0.000 0.005 0.003 0.002 0.000 0.000 0.000 0.000 0.007 0.002 0.024 0.137 0.000 0.000 0.414 - 10.45 51.08 2003 0.000 0.000 0.000 0.000 0.018 0.000 0.119 0.101 0.000 0.000 0.005 0.003 0.002 0.000 0.000 0.000 0.000 0.007 0.002 0.023 0.137 0.000 0.000 0.418 - 10.45 51.08 2004 0.000 0.000 0.000 0.000 0.018 0.000 0.124 0.102 0.000 0.000 0.005 0.003 0.003 0.000 0.000 0.000 0.000 0.008 0.002 0.024 0.141 0.000 0.000 0.430 - 10.45 51.08 2005 0.000 0.000 0.000 0.000 0.019 0.000 0.127 0.103 0.000 0.000 0.005 0.003 0.003 0.000 0.000 0.000 0.000 0.008 0.002 0.024 0.142 0.000 0.000 0.436 - 10.45 51.08 2006 0.000 0.000 0.000 0.000 0.017 0.000 0.129 0.103 0.000 0.000 0.005 0.003 0.003 0.000 0.000 0.000 0.000 0.008 0.002 0.024 0.141 0.000 0.000 0.434 - 10.45 51.08 2007 0.000 0.000 0.000 0.000 0.017 0.000 0.132 0.104 0.000 0.000 0.006 0.003 0.003 0.000 0.000 0.000 0.000 0.008 0.003 0.024 0.143 0.000 0.000 0.442 - 10.45 51.08 2008 0.000 0.000 0.000 0.000 0.017 0.000 0.135 0.104 0.000 0.000 0.006 0.003 0.003 0.000 0.000 0.000 0.000 0.008 0.003 0.024 0.136 0.000 0.000 0.438 - 10.45 51.08 2009 0.000 0.000 0.000 0.000 0.017 0.000 0.139 0.104 0.000 0.000 0.006 0.003 0.003 0.000 0.000 0.000 0.000 0.008 0.003 0.024 0.137 0.000 0.000 0.444 - 10.45 51.08 2010 0.000 0.000 0.000 0.000 0.017 0.000 0.140 0.104 0.000 0.000 0.006 0.003 0.003 0.000 0.000 0.000 0.000 0.008 0.003 0.023 0.126 0.000 0.000 0.433 - 10.45 51.08 2011 0.000 0.000 0.000 0.000 0.018 0.000 0.145 0.105 0.000 0.000 0.007 0.003 0.003 0.000 0.000 0.000 0.000 0.008 0.003 0.024 0.127 0.000 0.000 0.443 - 10.45 51.08 2012 0.000 0.000 0.000 0.000 0.018 0.000 0.149 0.105 0.000 0.000 0.007 0.003 0.003 0.000 0.000 0.000 0.000 0.008 0.003 0.024 0.128 0.000 0.000 0.448 diff --git a/rLPJGUESS/inst/extdata/outputsForTests/run_estinterval/outDirectory/lai.out b/rLPJGUESS/inst/extdata/outputsForTests/run_estinterval/outDirectory/lai.out deleted file mode 100644 index 8392a1e..0000000 --- a/rLPJGUESS/inst/extdata/outputsForTests/run_estinterval/outDirectory/lai.out +++ /dev/null @@ -1,63 +0,0 @@ - Lon Lat Year Abi_alb BES Bet_pen Bet_pub Car_bet Cor_ave Fag_syl Fra_exc Jun_oxy MRS Pic_abi Pic_sit Pin_syl Pin_hal Pop_tre Que_coc Que_ile Que_pub Que_rob Til_cor Ulm_gla C3_gr C4_gr Total - 10.45 51.08 1951 0.0000 0.0042 0.0507 0.0441 0.3283 0.0000 0.6958 1.0763 0.0000 0.0000 0.0102 0.0108 0.0077 0.0000 0.0000 0.0000 0.0000 0.0612 0.1014 0.1700 0.9055 0.0000 0.0000 3.4661 - 10.45 51.08 1952 0.0000 0.0040 0.0453 0.0428 0.3268 0.0000 0.7029 1.0445 0.0000 0.0000 0.0096 0.0098 0.0070 0.0000 0.0000 0.0000 0.0000 0.0590 0.0945 0.1666 0.8970 0.0000 0.0000 3.4097 - 10.45 51.08 1953 0.0000 0.0040 0.0424 0.0432 0.3317 0.0000 0.7270 1.0301 0.0000 0.0000 0.0094 0.0094 0.0068 0.0000 0.0000 0.0000 0.0000 0.0592 0.0949 0.1679 0.9070 0.0000 0.0000 3.4330 - 10.45 51.08 1954 0.0000 0.0030 0.0401 0.0421 0.3277 0.0000 0.7329 1.0223 0.0000 0.0000 0.0094 0.0091 0.0067 0.0000 0.0000 0.0000 0.0000 0.0575 0.0891 0.1648 0.8951 0.0000 0.0000 3.3999 - 10.45 51.08 1955 0.0000 0.0020 0.0377 0.0411 0.3219 0.0000 0.7359 0.9809 0.0000 0.0000 0.0089 0.0084 0.0062 0.0000 0.0000 0.0000 0.0000 0.0553 0.0857 0.1608 0.8752 0.0000 0.0000 3.3201 - 10.45 51.08 1956 0.0000 0.0020 0.0360 0.0403 0.3191 0.0000 0.7443 0.9756 0.0000 0.0000 0.0088 0.0081 0.0060 0.0000 0.0000 0.0000 0.0000 0.0540 0.0836 0.1586 0.8662 0.0000 0.0000 3.3027 - 10.45 51.08 1957 0.0000 0.0020 0.0342 0.0397 0.3182 0.0000 0.7541 0.9768 0.0000 0.0000 0.0085 0.0076 0.0057 0.0000 0.0000 0.0000 0.0000 0.0524 0.0811 0.1575 0.8345 0.0000 0.0000 3.2722 - 10.45 51.08 1958 0.0000 0.0019 0.0323 0.0385 0.3132 0.0000 0.7621 0.9722 0.0000 0.0000 0.0080 0.0070 0.0053 0.0000 0.0000 0.0000 0.0000 0.0507 0.0785 0.1539 0.8256 0.0000 0.0000 3.2493 - 10.45 51.08 1959 0.0000 0.0019 0.0149 0.0385 0.3179 0.0000 0.7819 0.9904 0.0000 0.0000 0.0078 0.0066 0.0051 0.0000 0.0000 0.0000 0.0000 0.0504 0.0781 0.1532 0.8367 0.0000 0.0000 3.2833 - 10.45 51.08 1960 0.0000 0.0010 0.0141 0.0375 0.3152 0.0000 0.7876 0.9831 0.0000 0.0000 0.0077 0.0063 0.0049 0.0000 0.0000 0.0000 0.0000 0.0486 0.0510 0.1497 0.8272 0.0000 0.0000 3.2338 - 10.45 51.08 1961 0.0000 0.0010 0.0134 0.0367 0.3135 0.0000 0.7982 0.9810 0.0000 0.0000 0.0075 0.0060 0.0042 0.0000 0.0000 0.0000 0.0000 0.0476 0.0498 0.1477 0.8220 0.0000 0.0000 3.2285 - 10.45 51.08 1962 0.0000 0.0010 0.0128 0.0000 0.3111 0.0000 0.8076 0.9763 0.0000 0.0000 0.0073 0.0057 0.0041 0.0000 0.0000 0.0000 0.0000 0.0463 0.0254 0.1429 0.8145 0.0000 0.0000 3.1550 - 10.45 51.08 1963 0.0000 0.0010 0.0121 0.0000 0.3097 0.0000 0.8164 0.9740 0.0000 0.0000 0.0071 0.0054 0.0039 0.0000 0.0000 0.0000 0.0000 0.0447 0.0245 0.1382 0.8087 0.0000 0.0000 3.1457 - 10.45 51.08 1964 0.0000 0.0000 0.0116 0.0000 0.3106 0.0000 0.8270 0.9785 0.0000 0.0000 0.0069 0.0051 0.0037 0.0000 0.0000 0.0000 0.0000 0.0440 0.0241 0.1361 0.8092 0.0000 0.0000 3.1568 - 10.45 51.08 1965 0.0000 0.0000 0.0111 0.0000 0.3072 0.0000 0.8338 0.9696 0.0000 0.0000 0.0070 0.0051 0.0038 0.0000 0.0000 0.0000 0.0000 0.0431 0.0237 0.1336 0.8000 0.0000 0.0000 3.1380 - 10.45 51.08 1966 0.0000 0.0000 0.0108 0.0000 0.3075 0.0000 0.8493 0.9720 0.0000 0.0000 0.0069 0.0048 0.0036 0.0000 0.0000 0.0000 0.0000 0.0427 0.0235 0.1319 0.8002 0.0000 0.0000 3.1531 - 10.45 51.08 1967 0.0000 0.0000 0.0101 0.0000 0.3035 0.0000 0.8517 0.9618 0.0000 0.0000 0.0070 0.0048 0.0032 0.0000 0.0000 0.0000 0.0000 0.0411 0.0226 0.1276 0.7879 0.0000 0.0000 3.1214 - 10.45 51.08 1968 0.0000 0.0000 0.0097 0.0000 0.3010 0.0000 0.8593 0.9550 0.0000 0.0000 0.0069 0.0046 0.0031 0.0000 0.0000 0.0000 0.0000 0.0403 0.0222 0.1253 0.7803 0.0000 0.0000 3.1075 - 10.45 51.08 1969 0.0000 0.0000 0.0091 0.0000 0.2965 0.0000 0.8585 0.9425 0.0000 0.0000 0.0065 0.0042 0.0029 0.0000 0.0000 0.0000 0.0000 0.0387 0.0213 0.1207 0.7663 0.0000 0.0000 3.0672 - 10.45 51.08 1970 0.0000 0.0000 0.0085 0.0000 0.2915 0.0000 0.8576 0.9285 0.0000 0.0000 0.0063 0.0040 0.0027 0.0000 0.0000 0.0000 0.0000 0.0371 0.0204 0.1161 0.7328 0.0000 0.0000 3.0055 - 10.45 51.08 1971 0.0000 0.0000 0.0000 0.0000 0.2896 0.0000 0.8619 0.9237 0.0000 0.0000 0.0064 0.0040 0.0028 0.0000 0.0000 0.0000 0.0000 0.0180 0.0199 0.1129 0.7266 0.0000 0.0000 2.9658 - 10.45 51.08 1972 0.0000 0.0000 0.0000 0.0000 0.2838 0.0000 0.8648 0.9123 0.0000 0.0000 0.0066 0.0040 0.0028 0.0000 0.0000 0.0000 0.0000 0.0176 0.0194 0.1098 0.7143 0.0000 0.0000 2.9355 - 10.45 51.08 1973 0.0000 0.0000 0.0000 0.0000 0.2782 0.0000 0.8642 0.8981 0.0000 0.0000 0.0068 0.0040 0.0029 0.0000 0.0000 0.0000 0.0000 0.0171 0.0189 0.1062 0.7020 0.0000 0.0000 2.8985 - 10.45 51.08 1974 0.0000 0.0000 0.0000 0.0000 0.2762 0.0000 0.8750 0.8924 0.0000 0.0000 0.0071 0.0041 0.0030 0.0000 0.0000 0.0000 0.0000 0.0172 0.0191 0.1053 0.6985 0.0000 0.0000 2.8977 - 10.45 51.08 1975 0.0000 0.0000 0.0000 0.0000 0.2705 0.0000 0.8715 0.8766 0.0000 0.0000 0.0073 0.0041 0.0030 0.0000 0.0000 0.0000 0.0000 0.0167 0.0186 0.1019 0.6850 0.0000 0.0000 2.8552 - 10.45 51.08 1976 0.0000 0.0000 0.0000 0.0000 0.2684 0.0000 0.8698 0.5972 0.0000 0.0000 0.0074 0.0040 0.0030 0.0000 0.0000 0.0000 0.0000 0.0160 0.0178 0.0976 0.6772 0.0000 0.0000 2.5584 - 10.45 51.08 1977 0.0000 0.0000 0.0000 0.0000 0.2686 0.0000 0.8836 0.5963 0.0000 0.0000 0.0079 0.0041 0.0032 0.0000 0.0000 0.0000 0.0000 0.0164 0.0184 0.0980 0.6782 0.0000 0.0000 2.5745 - 10.45 51.08 1978 0.0000 0.0000 0.0000 0.0000 0.2681 0.0000 0.8953 0.5945 0.0000 0.0000 0.0085 0.0044 0.0034 0.0000 0.0000 0.0000 0.0000 0.0167 0.0188 0.0980 0.6779 0.0000 0.0000 2.5855 - 10.45 51.08 1979 0.0000 0.0000 0.0000 0.0000 0.2658 0.0000 0.9002 0.5879 0.0000 0.0000 0.0091 0.0046 0.0036 0.0000 0.0000 0.0000 0.0000 0.0169 0.0191 0.0976 0.6723 0.0000 0.0000 2.5772 - 10.45 51.08 1980 0.0000 0.0000 0.0000 0.0000 0.2638 0.0000 0.9036 0.5824 0.0000 0.0000 0.0100 0.0050 0.0040 0.0000 0.0000 0.0000 0.0000 0.0169 0.0193 0.0968 0.6670 0.0000 0.0000 2.5688 - 10.45 51.08 1981 0.0000 0.0000 0.0000 0.0000 0.2662 0.0000 0.9257 0.5856 0.0000 0.0000 0.0103 0.0050 0.0040 0.0000 0.0000 0.0000 0.0000 0.0176 0.0026 0.0984 0.6734 0.0000 0.0000 2.5887 - 10.45 51.08 1982 0.0000 0.0000 0.0000 0.0000 0.2649 0.0000 0.9283 0.5816 0.0000 0.0000 0.0111 0.0054 0.0044 0.0000 0.0000 0.0000 0.0000 0.0174 0.0027 0.0971 0.6688 0.0000 0.0000 2.5816 - 10.45 51.08 1983 0.0000 0.0000 0.0000 0.0000 0.2673 0.0000 0.9437 0.5870 0.0000 0.0000 0.0114 0.0054 0.0044 0.0000 0.0000 0.0000 0.0000 0.0176 0.0028 0.0962 0.6751 0.0000 0.0000 2.6111 - 10.45 51.08 1984 0.0000 0.0000 0.0000 0.0000 0.2621 0.0000 0.9399 0.5751 0.0000 0.0000 0.0120 0.0056 0.0046 0.0000 0.0000 0.0000 0.0000 0.0175 0.0029 0.0943 0.6624 0.0000 0.0000 2.5763 - 10.45 51.08 1985 0.0000 0.0000 0.0000 0.0000 0.2649 0.0000 0.9614 0.5806 0.0000 0.0000 0.0126 0.0057 0.0041 0.0000 0.0000 0.0000 0.0000 0.0179 0.0031 0.0950 0.6700 0.0000 0.0000 2.6154 - 10.45 51.08 1986 0.0000 0.0000 0.0000 0.0000 0.2645 0.0000 0.9684 0.5797 0.0000 0.0000 0.0130 0.0058 0.0043 0.0000 0.0000 0.0000 0.0000 0.0177 0.0032 0.0933 0.6683 0.0000 0.0000 2.6182 - 10.45 51.08 1987 0.0000 0.0000 0.0000 0.0000 0.2640 0.0000 0.9782 0.5774 0.0000 0.0000 0.0135 0.0059 0.0044 0.0000 0.0000 0.0000 0.0000 0.0178 0.0033 0.0929 0.6666 0.0000 0.0000 2.6240 - 10.45 51.08 1988 0.0000 0.0000 0.0000 0.0000 0.2656 0.0000 0.9973 0.5797 0.0000 0.0000 0.0145 0.0063 0.0046 0.0000 0.0000 0.0000 0.0000 0.0183 0.0036 0.0938 0.6712 0.0000 0.0000 2.6549 - 10.45 51.08 1989 0.0000 0.0000 0.0000 0.0000 0.2716 0.0000 1.0296 0.5912 0.0000 0.0000 0.0156 0.0066 0.0050 0.0000 0.0000 0.0000 0.0000 0.0191 0.0039 0.0955 0.6865 0.0000 0.0000 2.7246 - 10.45 51.08 1990 0.0000 0.0000 0.0000 0.0000 0.2785 0.0000 1.0687 0.6045 0.0000 0.0000 0.0168 0.0071 0.0053 0.0000 0.0000 0.0000 0.0000 0.0201 0.0044 0.0984 0.7049 0.0000 0.0000 2.8085 - 10.45 51.08 1991 0.0000 0.0000 0.0000 0.0000 0.2783 0.0000 1.0814 0.6040 0.0000 0.0000 0.0172 0.0071 0.0054 0.0000 0.0000 0.0000 0.0000 0.0202 0.0045 0.0974 0.7049 0.0000 0.0000 2.8203 - 10.45 51.08 1992 0.0000 0.0000 0.0000 0.0000 0.2734 0.0000 1.0775 0.5941 0.0000 0.0000 0.0180 0.0073 0.0056 0.0000 0.0000 0.0000 0.0000 0.0197 0.0045 0.0945 0.6928 0.0000 0.0000 2.7875 - 10.45 51.08 1993 0.0000 0.0000 0.0000 0.0000 0.2750 0.0000 1.0969 0.5969 0.0000 0.0000 0.0182 0.0072 0.0056 0.0000 0.0000 0.0000 0.0000 0.0200 0.0047 0.0945 0.6968 0.0000 0.0000 2.8158 - 10.45 51.08 1994 0.0000 0.0000 0.0000 0.0000 0.2728 0.0000 1.0984 0.5914 0.0000 0.0000 0.0158 0.0071 0.0056 0.0000 0.0000 0.0000 0.0000 0.0197 0.0048 0.0922 0.6898 0.0000 0.0000 2.7977 - 10.45 51.08 1995 0.0000 0.0000 0.0000 0.0000 0.2695 0.0000 1.0930 0.5851 0.0000 0.0000 0.0158 0.0070 0.0055 0.0000 0.0000 0.0000 0.0000 0.0192 0.0048 0.0892 0.6811 0.0000 0.0000 2.7701 - 10.45 51.08 1996 0.0000 0.0000 0.0000 0.0000 0.2658 0.0000 1.0905 0.5764 0.0000 0.0000 0.0156 0.0068 0.0054 0.0000 0.0000 0.0000 0.0000 0.0189 0.0048 0.0716 0.6709 0.0000 0.0000 2.7267 - 10.45 51.08 1997 0.0000 0.0000 0.0000 0.0000 0.2655 0.0000 1.1031 0.5750 0.0000 0.0000 0.0165 0.0071 0.0057 0.0000 0.0000 0.0000 0.0000 0.0190 0.0050 0.0710 0.6701 0.0000 0.0000 2.7380 - 10.45 51.08 1998 0.0000 0.0000 0.0000 0.0000 0.2661 0.0000 1.1222 0.5744 0.0000 0.0000 0.0168 0.0071 0.0057 0.0000 0.0000 0.0000 0.0000 0.0194 0.0053 0.0711 0.6713 0.0000 0.0000 2.7594 - 10.45 51.08 1999 0.0000 0.0000 0.0000 0.0000 0.2675 0.0000 1.1439 0.5769 0.0000 0.0000 0.0174 0.0072 0.0059 0.0000 0.0000 0.0000 0.0000 0.0198 0.0056 0.0712 0.6757 0.0000 0.0000 2.7911 - 10.45 51.08 2000 0.0000 0.0000 0.0000 0.0000 0.2665 0.0000 1.1509 0.5734 0.0000 0.0000 0.0180 0.0074 0.0060 0.0000 0.0000 0.0000 0.0000 0.0196 0.0058 0.0700 0.6716 0.0000 0.0000 2.7891 - 10.45 51.08 2001 0.0000 0.0000 0.0000 0.0000 0.0468 0.0000 1.1628 0.5725 0.0000 0.0000 0.0183 0.0073 0.0060 0.0000 0.0000 0.0000 0.0000 0.0198 0.0060 0.0691 0.6714 0.0000 0.0000 2.5799 - 10.45 51.08 2002 0.0000 0.0000 0.0000 0.0000 0.0479 0.0000 1.1750 0.5693 0.0000 0.0000 0.0188 0.0074 0.0061 0.0000 0.0000 0.0000 0.0000 0.0201 0.0063 0.0688 0.6696 0.0000 0.0000 2.5893 - 10.45 51.08 2003 0.0000 0.0000 0.0000 0.0000 0.0486 0.0000 1.1829 0.5711 0.0000 0.0000 0.0198 0.0077 0.0064 0.0000 0.0000 0.0000 0.0000 0.0202 0.0066 0.0678 0.6719 0.0000 0.0000 2.6029 - 10.45 51.08 2004 0.0000 0.0000 0.0000 0.0000 0.0522 0.0000 1.2349 0.5857 0.0000 0.0000 0.0209 0.0080 0.0067 0.0000 0.0000 0.0000 0.0000 0.0214 0.0073 0.0703 0.6929 0.0000 0.0000 2.7004 - 10.45 51.08 2005 0.0000 0.0000 0.0000 0.0000 0.0539 0.0000 1.2643 0.5951 0.0000 0.0000 0.0216 0.0081 0.0068 0.0000 0.0000 0.0000 0.0000 0.0219 0.0078 0.0706 0.7047 0.0000 0.0000 2.7548 - 10.45 51.08 2006 0.0000 0.0000 0.0000 0.0000 0.0460 0.0000 1.2679 0.5976 0.0000 0.0000 0.0215 0.0079 0.0067 0.0000 0.0000 0.0000 0.0000 0.0214 0.0078 0.0683 0.7047 0.0000 0.0000 2.7499 - 10.45 51.08 2007 0.0000 0.0000 0.0000 0.0000 0.0470 0.0000 1.2904 0.6093 0.0000 0.0000 0.0237 0.0087 0.0073 0.0000 0.0000 0.0000 0.0000 0.0222 0.0083 0.0684 0.7202 0.0000 0.0000 2.8055 - 10.45 51.08 2008 0.0000 0.0000 0.0000 0.0000 0.0476 0.0000 1.3074 0.6094 0.0000 0.0000 0.0243 0.0088 0.0075 0.0000 0.0000 0.0000 0.0000 0.0224 0.0087 0.0680 0.6990 0.0000 0.0000 2.8030 - 10.45 51.08 2009 0.0000 0.0000 0.0000 0.0000 0.0488 0.0000 1.3315 0.6094 0.0000 0.0000 0.0252 0.0090 0.0077 0.0000 0.0000 0.0000 0.0000 0.0229 0.0091 0.0684 0.7009 0.0000 0.0000 2.8329 - 10.45 51.08 2010 0.0000 0.0000 0.0000 0.0000 0.0480 0.0000 1.3311 0.6058 0.0000 0.0000 0.0250 0.0087 0.0075 0.0000 0.0000 0.0000 0.0000 0.0225 0.0091 0.0666 0.6642 0.0000 0.0000 2.7884 - 10.45 51.08 2011 0.0000 0.0000 0.0000 0.0000 0.0503 0.0000 1.3759 0.6148 0.0000 0.0000 0.0265 0.0092 0.0078 0.0000 0.0000 0.0000 0.0000 0.0234 0.0097 0.0684 0.6751 0.0000 0.0000 2.8611 - 10.45 51.08 2012 0.0000 0.0000 0.0000 0.0000 0.0511 0.0000 1.3963 0.6131 0.0000 0.0000 0.0276 0.0094 0.0081 0.0000 0.0000 0.0000 0.0000 0.0236 0.0101 0.0683 0.6738 0.0000 0.0000 2.8815 diff --git a/rLPJGUESS/inst/extdata/outputsForTests/run_estinterval/outDirectory/maet.out b/rLPJGUESS/inst/extdata/outputsForTests/run_estinterval/outDirectory/maet.out deleted file mode 100644 index aff9f9f..0000000 --- a/rLPJGUESS/inst/extdata/outputsForTests/run_estinterval/outDirectory/maet.out +++ /dev/null @@ -1,63 +0,0 @@ - Lon Lat Year Jan Feb Mar Apr May Jun Jul Aug Sep Oct Nov Dec - 10.45 51.08 1951 0.001 0.008 1.779 18.517 39.638 49.010 57.374 44.617 30.249 12.800 2.030 0.001 - 10.45 51.08 1952 0.001 0.001 0.797 23.830 43.457 54.619 60.514 41.067 16.952 8.102 0.596 0.000 - 10.45 51.08 1953 0.000 0.208 6.335 34.065 49.947 41.658 52.815 46.495 29.879 12.775 0.690 0.001 - 10.45 51.08 1954 0.000 0.001 1.768 13.157 47.192 51.664 35.731 39.454 25.098 11.883 2.578 0.001 - 10.45 51.08 1955 0.000 0.001 1.315 14.813 41.262 45.976 40.218 35.053 25.278 11.077 1.915 0.001 - 10.45 51.08 1956 0.016 0.000 0.837 9.783 45.615 35.394 43.544 37.167 26.354 10.514 1.090 0.001 - 10.45 51.08 1957 0.053 0.315 9.031 24.728 37.799 57.983 45.952 39.047 20.835 10.089 0.037 0.000 - 10.45 51.08 1958 0.000 0.648 1.057 10.249 39.163 43.337 51.058 45.294 28.487 11.493 1.173 0.001 - 10.45 51.08 1959 0.001 0.136 6.407 26.495 43.189 52.205 51.676 38.840 34.914 14.682 0.037 0.000 - 10.45 51.08 1960 0.001 0.031 2.072 14.166 36.480 55.395 46.765 36.911 21.827 8.980 2.046 0.000 - 10.45 51.08 1961 0.000 0.344 6.154 18.943 29.106 47.856 41.574 37.524 30.189 12.221 0.001 0.000 - 10.45 51.08 1962 0.001 0.041 0.366 11.569 28.921 50.037 40.846 41.160 26.574 11.359 1.607 0.000 - 10.45 51.08 1963 0.000 0.000 0.669 12.140 38.445 42.428 51.079 35.649 24.469 9.004 2.387 0.000 - 10.45 51.08 1964 0.000 0.001 0.091 11.455 43.009 57.982 52.686 38.183 26.357 8.230 0.365 0.010 - 10.45 51.08 1965 0.049 0.000 0.596 10.491 32.029 42.280 39.365 39.745 22.432 10.696 0.885 0.001 - 10.45 51.08 1966 0.006 1.469 3.070 16.632 43.524 47.504 36.757 36.265 22.078 11.111 0.178 0.000 - 10.45 51.08 1967 0.003 0.532 5.272 11.956 39.694 39.455 55.247 35.694 19.896 12.009 1.676 0.000 - 10.45 51.08 1968 0.000 0.020 2.665 18.937 32.145 43.982 46.920 34.628 19.427 8.739 1.198 0.000 - 10.45 51.08 1969 0.000 0.000 0.000 6.039 34.665 42.897 51.743 34.241 24.137 10.900 2.729 0.000 - 10.45 51.08 1970 0.000 0.000 0.212 5.050 28.382 51.333 44.935 32.774 25.668 7.092 2.161 0.069 - 10.45 51.08 1971 0.000 0.019 0.532 11.854 34.791 33.807 55.200 41.966 23.842 11.702 1.859 0.000 - 10.45 51.08 1972 0.002 0.001 2.692 12.256 29.617 41.851 38.528 31.279 18.305 8.493 1.886 0.000 - 10.45 51.08 1973 0.000 0.000 1.016 4.625 33.002 40.933 41.384 41.956 22.889 8.202 1.354 0.000 - 10.45 51.08 1974 0.028 0.341 5.329 20.005 29.387 35.957 35.999 34.893 23.679 4.656 0.001 0.013 - 10.45 51.08 1975 0.001 0.016 0.981 9.414 32.399 34.598 45.766 44.921 23.176 6.922 1.253 0.000 - 10.45 51.08 1976 0.001 0.005 0.386 11.451 36.416 46.454 49.019 38.251 17.403 8.971 1.559 0.000 - 10.45 51.08 1977 0.000 0.098 4.447 10.825 32.729 27.861 35.320 23.715 17.007 8.706 1.392 0.000 - 10.45 51.08 1978 0.000 0.064 2.336 11.278 25.788 34.659 35.025 29.972 15.445 8.647 0.851 0.003 - 10.45 51.08 1979 0.005 0.000 0.208 5.647 27.044 38.142 30.970 31.279 20.430 9.103 0.887 0.010 - 10.45 51.08 1980 0.009 0.040 0.476 5.550 27.862 35.780 29.077 35.231 20.504 8.220 0.153 0.051 - 10.45 51.08 1981 0.027 0.013 5.738 16.727 30.866 34.494 32.764 29.846 20.263 7.861 0.059 0.000 - 10.45 51.08 1982 0.000 0.001 0.458 10.028 30.446 39.962 42.011 36.967 26.107 7.951 2.915 0.000 - 10.45 51.08 1983 0.001 0.033 2.079 14.001 25.914 40.031 48.812 35.633 21.288 9.479 1.634 0.000 - 10.45 51.08 1984 0.000 0.001 0.116 6.755 19.821 32.445 34.975 31.751 15.709 8.594 1.785 0.000 - 10.45 51.08 1985 0.002 0.019 0.287 12.465 32.517 31.774 44.320 33.126 21.352 9.464 0.804 0.019 - 10.45 51.08 1986 0.013 0.001 0.590 5.128 33.489 38.900 40.159 34.368 17.564 10.597 2.534 0.001 - 10.45 51.08 1987 0.000 0.001 0.228 12.855 26.462 28.321 39.569 28.839 19.856 9.096 1.194 0.000 - 10.45 51.08 1988 0.001 0.005 0.404 10.601 37.724 33.333 41.676 38.747 19.796 8.861 1.249 0.001 - 10.45 51.08 1989 0.019 0.067 4.682 12.644 44.690 41.432 41.076 37.499 20.910 10.352 0.934 0.001 - 10.45 51.08 1990 0.001 1.409 10.039 16.396 45.126 34.475 44.144 40.217 16.075 9.412 0.003 0.000 - 10.45 51.08 1991 0.001 0.017 4.785 17.616 25.381 36.731 50.838 36.729 27.060 10.673 0.685 0.000 - 10.45 51.08 1992 0.001 0.088 2.128 12.911 44.651 38.005 44.583 38.916 21.895 5.495 0.271 0.001 - 10.45 51.08 1993 0.020 0.057 4.024 22.837 40.877 39.102 38.588 36.339 17.025 7.403 0.119 0.001 - 10.45 51.08 1994 0.001 0.051 4.239 15.266 35.835 43.482 52.726 36.709 20.462 7.823 1.804 0.001 - 10.45 51.08 1995 0.001 0.280 1.996 13.337 33.729 32.450 49.473 43.948 16.568 11.276 0.668 0.000 - 10.45 51.08 1996 0.000 0.002 0.137 11.230 23.977 41.861 37.110 32.805 13.795 7.964 1.696 0.000 - 10.45 51.08 1997 0.000 0.308 5.132 13.245 34.081 41.841 35.769 40.236 25.806 7.525 0.779 0.001 - 10.45 51.08 1998 0.002 1.018 4.723 18.459 39.646 40.403 34.798 37.071 16.466 5.061 0.002 0.001 - 10.45 51.08 1999 0.009 0.144 2.988 16.481 39.080 39.161 42.953 35.676 28.405 7.648 1.073 0.001 - 10.45 51.08 2000 0.001 0.248 3.262 19.618 43.448 44.080 28.522 39.425 19.114 9.765 0.887 0.001 - 10.45 51.08 2001 0.001 0.150 1.663 12.059 43.461 34.067 47.599 38.719 14.737 11.808 1.074 0.000 - 10.45 51.08 2002 0.094 1.326 5.953 15.565 30.247 38.334 33.307 31.605 19.804 4.845 0.003 0.001 - 10.45 51.08 2003 0.001 0.001 2.520 15.163 34.184 49.892 41.406 42.833 22.148 5.844 0.559 0.001 - 10.45 51.08 2004 0.001 0.252 5.350 21.300 29.112 37.025 37.963 39.497 24.466 10.369 0.003 0.001 - 10.45 51.08 2005 0.002 0.001 2.985 19.428 36.187 44.079 42.509 30.639 26.023 12.142 1.936 0.001 - 10.45 51.08 2006 0.000 0.002 0.817 13.646 38.212 46.040 57.780 26.610 29.865 10.758 2.046 0.002 - 10.45 51.08 2007 0.003 0.112 3.369 27.110 39.644 43.466 40.162 35.874 18.809 8.454 0.542 0.001 - 10.45 51.08 2008 0.074 1.083 4.433 13.693 41.362 45.843 43.893 35.411 18.516 8.783 0.301 0.001 - 10.45 51.08 2009 0.001 0.002 0.668 22.564 35.544 32.509 41.416 41.407 22.118 6.170 0.723 0.001 - 10.45 51.08 2010 0.000 0.004 3.624 21.549 23.490 47.498 50.087 28.098 18.566 9.098 1.069 0.000 - 10.45 51.08 2011 0.004 0.192 5.551 27.667 43.030 40.357 35.993 31.326 24.865 10.774 0.239 0.002 - 10.45 51.08 2012 0.002 0.031 7.011 15.276 41.341 33.484 39.476 40.755 23.289 10.063 0.785 0.001 diff --git a/rLPJGUESS/inst/extdata/outputsForTests/run_estinterval/outDirectory/mevap.out b/rLPJGUESS/inst/extdata/outputsForTests/run_estinterval/outDirectory/mevap.out deleted file mode 100644 index 58b6188..0000000 --- a/rLPJGUESS/inst/extdata/outputsForTests/run_estinterval/outDirectory/mevap.out +++ /dev/null @@ -1,63 +0,0 @@ - Lon Lat Year Jan Feb Mar Apr May Jun Jul Aug Sep Oct Nov Dec - 10.45 51.08 1951 6.086 12.656 21.805 18.773 6.211 36.404 18.837 22.997 10.339 3.636 5.682 6.186 - 10.45 51.08 1952 4.344 3.318 26.862 30.669 24.791 13.279 3.121 1.689 14.596 11.432 7.232 3.906 - 10.45 51.08 1953 0.146 5.232 22.758 8.905 5.601 15.831 23.749 10.800 2.523 1.886 3.946 2.692 - 10.45 51.08 1954 4.387 9.859 20.216 24.482 11.596 6.539 21.646 21.997 11.087 9.290 4.206 5.012 - 10.45 51.08 1955 0.726 6.021 10.127 28.657 11.564 11.594 23.207 28.127 12.104 5.233 4.518 5.581 - 10.45 51.08 1956 6.420 0.000 21.835 28.336 20.334 27.387 38.350 21.415 9.172 5.879 4.361 4.026 - 10.45 51.08 1957 6.806 12.163 19.884 13.675 10.908 15.711 20.983 19.548 9.290 11.583 9.372 4.876 - 10.45 51.08 1958 7.545 10.900 11.671 26.287 23.974 26.861 27.654 18.613 8.447 8.484 6.098 5.847 - 10.45 51.08 1959 7.725 9.653 14.372 14.268 11.814 16.997 1.998 12.871 3.240 0.472 6.979 4.373 - 10.45 51.08 1960 4.784 11.277 17.266 15.849 23.826 15.537 5.426 12.996 14.577 11.686 6.871 2.161 - 10.45 51.08 1961 1.408 15.262 15.460 24.613 29.872 34.398 5.833 9.267 4.771 1.052 2.572 4.236 - 10.45 51.08 1962 7.458 11.884 9.430 27.205 15.683 6.549 12.005 5.906 6.363 1.877 0.612 1.884 - 10.45 51.08 1963 0.000 0.000 19.904 27.833 14.270 16.386 23.142 26.604 9.918 7.979 5.549 4.593 - 10.45 51.08 1964 3.500 12.174 14.703 27.252 31.957 17.429 10.271 10.518 5.182 3.240 3.811 3.266 - 10.45 51.08 1965 5.931 0.000 14.329 23.856 25.139 29.726 17.089 16.414 9.950 3.721 1.408 5.454 - 10.45 51.08 1966 4.374 9.893 18.066 23.597 15.351 18.564 39.231 22.582 14.491 5.349 8.046 5.691 - 10.45 51.08 1967 6.574 11.172 21.174 20.151 14.776 31.367 19.275 13.450 17.255 9.680 4.403 4.252 - 10.45 51.08 1968 4.585 11.729 25.790 18.231 19.753 14.947 8.862 9.127 12.151 11.711 6.415 3.157 - 10.45 51.08 1969 5.314 3.143 0.000 32.899 36.260 37.139 13.329 6.137 19.993 5.307 3.098 1.467 - 10.45 51.08 1970 0.000 2.541 14.148 35.341 28.777 13.373 11.054 31.166 12.783 7.131 5.582 4.751 - 10.45 51.08 1971 3.306 8.922 14.023 17.905 16.749 18.687 7.363 1.365 2.358 4.351 3.897 5.574 - 10.45 51.08 1972 3.776 7.947 26.694 19.173 23.417 31.657 26.043 38.527 11.347 4.452 4.393 5.317 - 10.45 51.08 1973 5.330 9.820 22.886 19.589 20.323 10.019 8.640 8.832 10.038 10.790 7.482 5.533 - 10.45 51.08 1974 7.039 10.312 21.310 13.754 16.719 22.984 30.099 15.194 9.657 6.143 8.963 6.712 - 10.45 51.08 1975 8.046 11.128 21.317 31.028 24.493 19.105 19.813 5.446 7.631 4.255 3.574 2.913 - 10.45 51.08 1976 6.783 10.086 14.928 16.052 11.042 25.912 2.363 3.332 1.356 4.586 3.215 3.490 - 10.45 51.08 1977 4.291 10.087 22.113 21.720 15.188 23.735 32.964 33.411 19.246 9.878 9.387 5.715 - 10.45 51.08 1978 6.114 5.507 18.851 16.205 21.160 9.446 16.855 17.766 12.532 13.346 4.728 3.686 - 10.45 51.08 1979 0.000 0.000 17.982 32.579 26.498 16.829 24.179 13.549 8.139 4.819 6.187 6.279 - 10.45 51.08 1980 5.187 11.215 12.105 22.140 23.878 15.147 17.598 6.264 6.126 7.188 4.608 3.895 - 10.45 51.08 1981 2.565 8.657 25.467 17.519 35.690 29.605 10.265 25.979 10.623 14.826 9.780 1.940 - 10.45 51.08 1982 5.934 11.301 17.221 14.938 20.230 6.432 9.191 7.397 0.766 4.091 2.430 2.184 - 10.45 51.08 1983 3.890 5.835 14.611 40.067 27.798 22.113 7.191 15.170 9.515 4.342 1.542 1.781 - 10.45 51.08 1984 3.832 9.338 17.994 35.710 32.446 31.630 20.929 26.675 17.166 13.402 6.583 5.802 - 10.45 51.08 1985 2.457 10.233 15.285 20.935 10.548 15.684 16.222 13.090 8.350 1.865 0.626 3.622 - 10.45 51.08 1986 6.765 3.720 21.890 32.484 32.160 29.492 8.744 12.074 14.966 10.283 6.214 3.825 - 10.45 51.08 1987 1.795 4.312 7.353 26.928 20.784 42.885 25.286 28.976 17.839 11.459 4.519 5.486 - 10.45 51.08 1988 7.836 8.290 11.183 31.464 10.413 10.018 29.409 9.908 3.771 1.811 1.619 4.943 - 10.45 51.08 1989 8.168 9.357 23.994 14.720 17.187 15.507 7.255 6.526 4.334 5.938 9.698 6.429 - 10.45 51.08 1990 7.459 14.042 21.415 16.705 11.603 24.976 17.135 2.965 8.319 6.304 5.004 4.334 - 10.45 51.08 1991 5.946 7.579 16.409 10.933 10.209 10.275 7.568 25.119 3.506 1.956 1.844 2.326 - 10.45 51.08 1992 5.180 8.980 21.107 27.724 13.064 14.705 29.267 9.859 12.787 4.557 7.309 5.993 - 10.45 51.08 1993 7.159 3.650 20.340 16.284 13.191 35.434 31.263 18.209 11.219 7.491 5.728 5.819 - 10.45 51.08 1994 7.787 9.800 26.037 28.484 23.896 24.033 30.568 17.412 18.115 8.114 6.763 6.567 - 10.45 51.08 1995 7.429 14.289 17.805 21.837 21.493 32.022 31.731 18.874 16.544 12.341 4.461 2.946 - 10.45 51.08 1996 4.221 10.011 14.937 21.379 27.305 24.157 28.508 26.366 14.211 8.616 5.780 4.820 - 10.45 51.08 1997 5.978 14.790 24.729 25.054 16.973 6.561 26.452 18.974 8.539 5.847 5.070 4.256 - 10.45 51.08 1998 7.503 10.734 17.693 15.300 19.963 17.108 18.556 8.203 17.595 14.016 9.498 5.425 - 10.45 51.08 1999 6.986 9.867 20.051 21.143 14.498 27.150 35.025 13.438 7.092 2.811 5.911 5.896 - 10.45 51.08 2000 7.228 15.374 26.081 25.634 13.456 8.281 10.841 15.462 16.582 10.303 5.686 3.727 - 10.45 51.08 2001 4.167 8.899 17.007 29.304 23.611 18.849 35.688 5.712 7.193 7.831 6.616 5.218 - 10.45 51.08 2002 7.510 12.736 22.591 21.344 30.161 32.080 27.648 28.829 12.503 14.039 10.713 4.231 - 10.45 51.08 2003 7.408 11.055 23.990 15.762 14.706 37.116 8.358 1.741 8.342 6.456 6.170 5.934 - 10.45 51.08 2004 6.683 11.280 16.695 18.390 32.865 14.338 23.575 7.069 4.371 4.068 5.242 5.438 - 10.45 51.08 2005 7.607 10.137 18.985 23.035 18.032 7.152 14.465 23.949 17.847 11.168 5.288 4.132 - 10.45 51.08 2006 4.680 7.064 13.029 27.246 20.798 29.261 29.197 19.889 18.891 8.908 5.448 4.198 - 10.45 51.08 2007 6.738 11.281 22.733 19.329 15.713 38.119 33.543 36.180 13.496 11.371 6.673 5.326 - 10.45 51.08 2008 7.498 10.428 19.527 29.207 16.302 11.739 15.992 3.725 4.856 7.565 7.511 5.220 - 10.45 51.08 2009 5.632 9.164 20.796 25.179 29.919 18.767 22.832 10.174 9.295 8.076 9.696 5.486 - 10.45 51.08 2010 0.000 2.904 23.365 16.639 26.215 15.885 22.832 35.603 14.609 13.296 8.351 0.000 - 10.45 51.08 2011 4.851 10.691 21.070 14.540 4.048 5.696 25.809 17.508 15.758 7.384 4.722 3.607 - 10.45 51.08 2012 7.447 9.349 17.178 9.300 12.120 26.944 32.730 15.797 6.648 4.809 4.174 5.927 diff --git a/rLPJGUESS/inst/extdata/outputsForTests/run_estinterval/outDirectory/mgpp.out b/rLPJGUESS/inst/extdata/outputsForTests/run_estinterval/outDirectory/mgpp.out deleted file mode 100644 index b2ae910..0000000 --- a/rLPJGUESS/inst/extdata/outputsForTests/run_estinterval/outDirectory/mgpp.out +++ /dev/null @@ -1,63 +0,0 @@ - Lon Lat Year Jan Feb Mar Apr May Jun Jul Aug Sep Oct Nov Dec - 10.45 51.08 1951 0.000 0.001 0.004 0.050 0.175 0.220 0.221 0.178 0.132 0.060 0.015 0.000 - 10.45 51.08 1952 0.000 0.000 0.002 0.084 0.207 0.223 0.192 0.147 0.099 0.050 0.006 0.000 - 10.45 51.08 1953 0.000 0.001 0.017 0.135 0.190 0.182 0.203 0.188 0.136 0.071 0.005 0.000 - 10.45 51.08 1954 0.000 0.000 0.005 0.035 0.194 0.206 0.178 0.171 0.116 0.070 0.015 0.000 - 10.45 51.08 1955 0.000 0.000 0.003 0.035 0.180 0.203 0.173 0.153 0.123 0.061 0.011 0.000 - 10.45 51.08 1956 0.000 0.000 0.002 0.027 0.183 0.178 0.192 0.179 0.130 0.059 0.006 0.000 - 10.45 51.08 1957 0.000 0.001 0.029 0.095 0.172 0.213 0.167 0.174 0.109 0.058 0.001 0.000 - 10.45 51.08 1958 0.000 0.002 0.002 0.027 0.170 0.192 0.206 0.190 0.134 0.065 0.008 0.000 - 10.45 51.08 1959 0.000 0.000 0.019 0.102 0.204 0.209 0.166 0.163 0.166 0.078 0.001 0.000 - 10.45 51.08 1960 0.000 0.000 0.005 0.040 0.164 0.215 0.211 0.169 0.115 0.056 0.014 0.000 - 10.45 51.08 1961 0.000 0.001 0.017 0.095 0.155 0.207 0.181 0.171 0.131 0.070 0.000 0.000 - 10.45 51.08 1962 0.000 0.000 0.001 0.031 0.141 0.211 0.193 0.184 0.132 0.061 0.008 0.000 - 10.45 51.08 1963 0.000 0.000 0.001 0.040 0.171 0.200 0.207 0.169 0.126 0.053 0.019 0.000 - 10.45 51.08 1964 0.000 0.000 0.000 0.041 0.201 0.237 0.212 0.172 0.133 0.046 0.002 0.000 - 10.45 51.08 1965 0.000 0.000 0.001 0.027 0.148 0.200 0.187 0.194 0.126 0.058 0.006 0.000 - 10.45 51.08 1966 0.000 0.004 0.007 0.065 0.212 0.205 0.186 0.174 0.117 0.066 0.001 0.000 - 10.45 51.08 1967 0.000 0.001 0.012 0.034 0.175 0.193 0.221 0.168 0.111 0.073 0.010 0.000 - 10.45 51.08 1968 0.000 0.000 0.007 0.062 0.166 0.209 0.208 0.164 0.109 0.056 0.008 0.000 - 10.45 51.08 1969 0.000 0.000 0.000 0.017 0.162 0.203 0.204 0.152 0.128 0.068 0.019 0.000 - 10.45 51.08 1970 0.000 0.000 0.000 0.014 0.137 0.216 0.203 0.165 0.133 0.045 0.016 0.001 - 10.45 51.08 1971 0.000 0.000 0.001 0.035 0.152 0.181 0.230 0.171 0.131 0.068 0.012 0.000 - 10.45 51.08 1972 0.000 0.000 0.006 0.039 0.150 0.216 0.175 0.165 0.103 0.044 0.013 0.000 - 10.45 51.08 1973 0.000 0.000 0.002 0.011 0.151 0.199 0.187 0.190 0.119 0.049 0.008 0.000 - 10.45 51.08 1974 0.000 0.001 0.016 0.073 0.162 0.197 0.190 0.163 0.126 0.025 0.000 0.000 - 10.45 51.08 1975 0.000 0.000 0.002 0.026 0.159 0.180 0.197 0.188 0.120 0.040 0.007 0.000 - 10.45 51.08 1976 0.000 0.000 0.001 0.030 0.171 0.202 0.183 0.189 0.102 0.055 0.009 0.000 - 10.45 51.08 1977 0.000 0.000 0.014 0.037 0.181 0.153 0.179 0.135 0.095 0.058 0.013 0.000 - 10.45 51.08 1978 0.000 0.000 0.006 0.033 0.133 0.179 0.183 0.156 0.097 0.055 0.004 0.000 - 10.45 51.08 1979 0.000 0.000 0.001 0.016 0.116 0.185 0.170 0.163 0.113 0.053 0.006 0.000 - 10.45 51.08 1980 0.000 0.000 0.001 0.015 0.112 0.191 0.158 0.169 0.117 0.051 0.000 0.000 - 10.45 51.08 1981 0.000 0.000 0.019 0.071 0.159 0.176 0.165 0.153 0.117 0.049 0.001 0.000 - 10.45 51.08 1982 0.000 0.000 0.001 0.027 0.134 0.181 0.181 0.168 0.128 0.056 0.021 0.000 - 10.45 51.08 1983 0.000 0.000 0.005 0.053 0.151 0.189 0.194 0.165 0.122 0.057 0.011 0.000 - 10.45 51.08 1984 0.000 0.000 0.001 0.018 0.102 0.178 0.172 0.158 0.094 0.062 0.009 0.000 - 10.45 51.08 1985 0.000 0.000 0.001 0.038 0.157 0.171 0.206 0.170 0.119 0.053 0.005 0.000 - 10.45 51.08 1986 0.000 0.000 0.001 0.015 0.161 0.174 0.185 0.163 0.107 0.069 0.018 0.000 - 10.45 51.08 1987 0.000 0.000 0.001 0.040 0.141 0.165 0.188 0.155 0.111 0.055 0.009 0.000 - 10.45 51.08 1988 0.000 0.000 0.001 0.029 0.187 0.174 0.202 0.180 0.113 0.059 0.008 0.000 - 10.45 51.08 1989 0.000 0.000 0.012 0.050 0.219 0.208 0.192 0.173 0.114 0.068 0.009 0.000 - 10.45 51.08 1990 0.000 0.005 0.038 0.072 0.241 0.183 0.217 0.167 0.102 0.061 0.000 0.000 - 10.45 51.08 1991 0.000 0.000 0.014 0.068 0.132 0.202 0.200 0.169 0.138 0.064 0.005 0.000 - 10.45 51.08 1992 0.000 0.001 0.005 0.039 0.206 0.179 0.192 0.165 0.127 0.032 0.001 0.000 - 10.45 51.08 1993 0.000 0.000 0.010 0.087 0.208 0.193 0.182 0.178 0.104 0.045 0.001 0.000 - 10.45 51.08 1994 0.000 0.000 0.012 0.057 0.196 0.202 0.189 0.166 0.120 0.045 0.013 0.000 - 10.45 51.08 1995 0.000 0.001 0.005 0.047 0.169 0.165 0.192 0.187 0.101 0.070 0.005 0.000 - 10.45 51.08 1996 0.000 0.000 0.000 0.038 0.132 0.189 0.192 0.163 0.085 0.053 0.013 0.000 - 10.45 51.08 1997 0.000 0.001 0.015 0.040 0.171 0.196 0.181 0.175 0.140 0.046 0.005 0.000 - 10.45 51.08 1998 0.000 0.004 0.015 0.088 0.207 0.196 0.174 0.169 0.102 0.038 0.000 0.000 - 10.45 51.08 1999 0.000 0.000 0.008 0.066 0.199 0.209 0.187 0.173 0.138 0.049 0.009 0.000 - 10.45 51.08 2000 0.000 0.001 0.010 0.072 0.212 0.185 0.159 0.184 0.111 0.066 0.008 0.000 - 10.45 51.08 2001 0.000 0.001 0.005 0.043 0.212 0.184 0.207 0.169 0.095 0.077 0.008 0.000 - 10.45 51.08 2002 0.001 0.006 0.022 0.070 0.172 0.189 0.156 0.153 0.113 0.035 0.001 0.000 - 10.45 51.08 2003 0.000 0.000 0.007 0.052 0.185 0.214 0.180 0.154 0.127 0.034 0.005 0.000 - 10.45 51.08 2004 0.000 0.001 0.016 0.094 0.170 0.194 0.197 0.178 0.135 0.066 0.000 0.000 - 10.45 51.08 2005 0.000 0.000 0.008 0.079 0.169 0.192 0.193 0.164 0.138 0.080 0.016 0.000 - 10.45 51.08 2006 0.000 0.000 0.003 0.045 0.196 0.197 0.185 0.151 0.150 0.075 0.017 0.000 - 10.45 51.08 2007 0.001 0.001 0.012 0.100 0.209 0.203 0.190 0.185 0.117 0.053 0.006 0.000 - 10.45 51.08 2008 0.001 0.004 0.014 0.053 0.213 0.212 0.194 0.170 0.106 0.059 0.004 0.000 - 10.45 51.08 2009 0.000 0.000 0.002 0.101 0.202 0.184 0.190 0.189 0.126 0.041 0.006 0.000 - 10.45 51.08 2010 0.000 0.000 0.013 0.080 0.138 0.213 0.190 0.153 0.114 0.055 0.009 0.000 - 10.45 51.08 2011 0.000 0.001 0.013 0.138 0.218 0.198 0.191 0.159 0.139 0.064 0.004 0.000 - 10.45 51.08 2012 0.000 0.000 0.020 0.061 0.202 0.187 0.194 0.191 0.132 0.064 0.006 0.000 diff --git a/rLPJGUESS/inst/extdata/outputsForTests/run_estinterval/outDirectory/mintercep.out b/rLPJGUESS/inst/extdata/outputsForTests/run_estinterval/outDirectory/mintercep.out deleted file mode 100644 index 5ba8cea..0000000 --- a/rLPJGUESS/inst/extdata/outputsForTests/run_estinterval/outDirectory/mintercep.out +++ /dev/null @@ -1,63 +0,0 @@ - Lon Lat Year Jan Feb Mar Apr May Jun Jul Aug Sep Oct Nov Dec - 10.45 51.08 1951 0.017 0.023 0.167 0.488 2.189 9.872 2.731 4.958 2.529 0.736 1.100 0.013 - 10.45 51.08 1952 0.027 0.018 0.327 1.507 4.586 2.491 1.223 2.438 6.198 3.776 1.867 0.018 - 10.45 51.08 1953 0.022 0.020 0.041 0.780 2.887 6.113 3.305 2.629 1.267 1.453 0.005 0.016 - 10.45 51.08 1954 0.024 0.020 0.051 0.842 1.441 2.798 6.781 4.452 2.708 2.392 0.724 0.022 - 10.45 51.08 1955 0.016 0.029 0.048 0.624 2.241 3.597 5.780 3.349 2.688 1.315 0.161 0.023 - 10.45 51.08 1956 0.017 0.016 0.027 1.077 1.901 7.178 8.768 4.571 1.300 2.641 0.921 0.014 - 10.45 51.08 1957 0.063 0.131 0.636 0.842 2.973 3.740 5.175 2.618 3.590 0.972 0.014 0.012 - 10.45 51.08 1958 0.019 0.382 0.723 0.629 4.130 3.608 3.942 4.454 2.843 1.960 0.961 0.015 - 10.45 51.08 1959 0.014 0.006 0.294 1.818 2.710 2.666 0.864 3.193 0.030 1.126 0.022 0.009 - 10.45 51.08 1960 0.022 0.012 0.096 0.919 3.390 1.647 2.682 4.051 2.574 3.136 1.038 0.014 - 10.45 51.08 1961 0.011 0.019 0.439 4.235 5.781 4.294 2.557 2.426 1.274 0.774 0.011 0.015 - 10.45 51.08 1962 0.012 0.029 0.055 0.464 2.657 0.852 3.665 1.734 1.543 0.413 0.189 0.011 - 10.45 51.08 1963 0.011 0.007 0.075 0.582 1.509 5.026 1.837 6.005 2.029 1.356 1.537 0.003 - 10.45 51.08 1964 0.006 0.012 0.026 1.116 3.274 2.318 2.350 2.618 1.389 1.182 0.098 0.032 - 10.45 51.08 1965 0.080 0.010 0.023 0.959 1.324 4.663 3.308 2.304 2.251 0.455 0.712 0.015 - 10.45 51.08 1966 0.016 0.109 0.355 1.591 2.779 4.852 4.548 3.664 1.006 2.081 0.181 0.015 - 10.45 51.08 1967 0.009 0.043 0.445 0.487 2.357 4.811 2.403 3.348 3.106 1.484 0.329 0.010 - 10.45 51.08 1968 0.009 0.024 0.039 2.011 1.946 3.352 2.103 2.953 2.769 1.796 0.415 0.006 - 10.45 51.08 1969 0.007 0.015 0.016 0.722 3.746 4.790 0.537 4.114 1.560 0.631 0.860 0.006 - 10.45 51.08 1970 0.007 0.016 0.014 0.345 3.221 2.449 2.176 5.491 0.971 2.401 1.246 0.069 - 10.45 51.08 1971 0.003 0.011 0.037 0.944 1.854 3.589 0.648 1.954 1.318 1.163 0.612 0.005 - 10.45 51.08 1972 0.005 0.001 0.103 0.639 2.973 3.619 4.178 4.490 1.215 0.889 0.577 0.001 - 10.45 51.08 1973 0.006 0.011 0.005 0.234 1.647 2.170 2.891 1.227 2.144 1.738 0.446 0.007 - 10.45 51.08 1974 0.008 0.135 0.251 0.510 2.764 4.297 3.208 2.515 1.320 2.424 0.006 0.030 - 10.45 51.08 1975 0.003 0.010 0.134 0.359 2.141 3.537 1.401 1.997 1.406 1.337 0.176 0.003 - 10.45 51.08 1976 0.019 0.003 0.014 0.353 1.749 2.394 1.281 1.622 1.612 1.007 0.635 0.005 - 10.45 51.08 1977 0.008 0.018 0.520 0.472 1.196 3.498 2.645 4.491 1.319 1.169 0.844 0.008 - 10.45 51.08 1978 0.005 0.007 0.086 0.244 2.205 1.032 2.282 2.519 2.522 0.864 0.001 0.021 - 10.45 51.08 1979 0.032 0.012 0.069 0.354 1.310 2.804 2.464 0.998 1.888 0.311 0.972 0.020 - 10.45 51.08 1980 0.035 0.012 0.022 0.558 0.939 2.527 2.274 0.774 1.971 0.903 0.161 0.054 - 10.45 51.08 1981 0.124 0.011 0.369 0.868 2.840 2.183 1.311 3.191 1.333 1.285 0.017 0.016 - 10.45 51.08 1982 0.009 0.002 0.015 0.278 0.929 1.719 1.972 0.690 0.437 1.472 0.430 0.009 - 10.45 51.08 1983 0.016 0.015 0.194 1.560 3.753 1.076 1.206 1.791 2.000 0.182 0.092 0.008 - 10.45 51.08 1984 0.017 0.020 0.002 0.144 4.088 1.968 2.263 2.469 2.050 2.060 0.086 0.007 - 10.45 51.08 1985 0.010 0.007 0.027 0.326 1.397 2.666 1.975 1.990 0.792 0.149 0.387 0.033 - 10.45 51.08 1986 0.043 0.011 0.047 0.399 3.118 2.021 1.951 2.334 1.745 0.883 0.244 0.014 - 10.45 51.08 1987 0.019 0.021 0.029 0.138 2.358 4.813 2.856 2.769 2.679 0.720 0.975 0.009 - 10.45 51.08 1988 0.014 0.024 0.080 0.262 0.943 2.201 2.801 0.799 0.994 0.592 0.618 0.023 - 10.45 51.08 1989 0.012 0.015 0.194 1.234 1.313 2.341 1.877 1.004 1.635 1.052 0.804 0.017 - 10.45 51.08 1990 0.009 0.232 0.497 1.699 0.604 3.399 0.996 1.736 2.115 0.401 0.033 0.017 - 10.45 51.08 1991 0.015 0.014 0.258 0.448 1.360 2.802 0.946 2.699 0.825 0.679 0.194 0.016 - 10.45 51.08 1992 0.008 0.018 0.539 0.279 1.026 3.196 2.979 1.444 1.167 1.719 0.170 0.016 - 10.45 51.08 1993 0.045 0.033 0.104 0.358 3.111 2.785 3.600 1.757 2.088 1.445 0.103 0.028 - 10.45 51.08 1994 0.026 0.027 0.380 1.133 3.617 2.080 3.249 3.575 1.864 0.902 0.339 0.019 - 10.45 51.08 1995 0.029 0.079 0.115 0.996 2.796 3.236 4.093 1.712 2.886 0.481 0.438 0.013 - 10.45 51.08 1996 0.001 0.020 0.024 0.523 3.305 2.663 3.098 3.590 1.307 1.579 1.046 0.012 - 10.45 51.08 1997 0.008 0.097 0.681 0.692 1.935 1.336 4.904 1.851 0.547 1.592 0.150 0.021 - 10.45 51.08 1998 0.016 0.082 0.473 1.647 1.735 2.559 3.138 1.229 2.876 2.338 0.038 0.007 - 10.45 51.08 1999 0.020 0.042 0.263 0.688 2.674 3.215 3.139 2.150 1.087 0.644 0.376 0.021 - 10.45 51.08 2000 0.020 0.108 0.595 0.871 1.193 1.798 2.659 2.471 2.642 1.229 0.211 0.011 - 10.45 51.08 2001 0.013 0.033 0.807 0.911 1.429 3.707 3.257 0.887 2.439 1.188 0.648 0.019 - 10.45 51.08 2002 0.018 0.525 0.939 1.120 2.887 2.612 2.738 2.990 1.420 1.188 0.041 0.025 - 10.45 51.08 2003 0.021 0.014 0.047 0.277 2.418 3.146 1.704 0.837 1.809 1.114 0.090 0.015 - 10.45 51.08 2004 0.019 0.034 0.199 1.161 3.651 1.972 2.920 1.381 1.344 0.389 0.026 0.009 - 10.45 51.08 2005 0.016 0.036 0.131 0.999 1.914 1.764 3.352 2.235 2.577 0.710 0.403 0.021 - 10.45 51.08 2006 0.012 0.024 0.102 1.140 2.148 2.852 2.062 4.103 0.415 1.710 0.789 0.012 - 10.45 51.08 2007 0.035 0.042 0.265 0.206 3.948 3.279 4.331 3.263 2.447 0.326 0.522 0.021 - 10.45 51.08 2008 0.042 0.076 0.712 1.578 0.744 2.536 2.528 1.428 1.599 2.049 0.038 0.018 - 10.45 51.08 2009 0.007 0.043 0.088 1.560 3.007 2.498 3.081 0.689 2.039 1.839 0.939 0.038 - 10.45 51.08 2010 0.023 0.024 0.225 0.377 3.897 0.613 4.712 5.223 1.698 0.508 0.366 0.032 - 10.45 51.08 2011 0.022 0.025 0.144 0.955 0.330 3.425 2.936 3.488 1.233 1.326 0.000 0.032 - 10.45 51.08 2012 0.042 0.011 0.035 0.395 1.469 4.699 4.420 2.079 1.210 0.816 0.288 0.033 diff --git a/rLPJGUESS/inst/extdata/outputsForTests/run_estinterval/outDirectory/miso.out b/rLPJGUESS/inst/extdata/outputsForTests/run_estinterval/outDirectory/miso.out deleted file mode 100644 index 8edc368..0000000 --- a/rLPJGUESS/inst/extdata/outputsForTests/run_estinterval/outDirectory/miso.out +++ /dev/null @@ -1,63 +0,0 @@ - Lon Lat Year Jan Feb Mar Apr May Jun Jul Aug Sep Oct Nov Dec - 10.45 51.08 1951 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1952 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1953 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1954 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1955 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1956 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1957 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1958 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1959 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1960 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1961 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1962 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1963 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1964 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1965 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1966 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1967 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1968 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1969 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1970 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1971 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1972 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1973 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1974 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1975 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1976 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1977 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1978 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1979 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1980 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1981 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1982 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1983 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1984 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1985 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1986 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1987 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1988 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1989 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1990 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1991 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1992 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1993 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1994 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1995 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1996 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1997 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1998 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1999 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 2000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 2001 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 2002 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 2003 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 2004 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 2005 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 2006 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 2007 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 2008 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 2009 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 2010 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 2011 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 2012 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 diff --git a/rLPJGUESS/inst/extdata/outputsForTests/run_estinterval/outDirectory/mlai.out b/rLPJGUESS/inst/extdata/outputsForTests/run_estinterval/outDirectory/mlai.out deleted file mode 100644 index 837cb40..0000000 --- a/rLPJGUESS/inst/extdata/outputsForTests/run_estinterval/outDirectory/mlai.out +++ /dev/null @@ -1,63 +0,0 @@ - Lon Lat Year Jan Feb Mar Apr May Jun Jul Aug Sep Oct Nov Dec - 10.45 51.08 1951 0.033 0.033 0.213 1.047 3.116 3.475 3.475 3.475 3.475 3.475 2.252 0.033 - 10.45 51.08 1952 0.033 0.033 0.134 1.716 3.466 3.466 3.466 3.466 3.466 3.466 1.260 0.033 - 10.45 51.08 1953 0.030 0.046 0.346 2.283 3.410 3.410 3.410 3.410 3.410 3.410 0.411 0.030 - 10.45 51.08 1954 0.030 0.030 0.139 0.887 2.811 3.433 3.433 3.433 3.433 3.433 2.683 0.030 - 10.45 51.08 1955 0.028 0.028 0.122 0.937 3.153 3.400 3.400 3.400 3.400 3.400 2.164 0.028 - 10.45 51.08 1956 0.030 0.026 0.070 0.714 2.707 3.320 3.320 3.320 3.320 3.320 2.112 0.027 - 10.45 51.08 1957 0.089 0.141 0.763 2.205 3.292 3.303 3.303 3.303 3.303 3.111 0.066 0.025 - 10.45 51.08 1958 0.024 0.245 0.562 0.871 2.829 3.272 3.272 3.272 3.272 3.272 1.732 0.024 - 10.45 51.08 1959 0.022 0.048 0.612 2.199 3.248 3.248 3.248 3.248 3.248 3.185 0.107 0.022 - 10.45 51.08 1960 0.021 0.024 0.272 1.108 2.781 3.283 3.283 3.283 3.283 3.283 2.064 0.021 - 10.45 51.08 1961 0.020 0.042 0.688 2.281 3.234 3.234 3.234 3.234 3.234 3.109 0.020 0.020 - 10.45 51.08 1962 0.019 0.043 0.080 0.686 2.705 3.192 3.192 3.192 3.192 3.192 1.605 0.019 - 10.45 51.08 1963 0.018 0.018 0.076 0.813 2.754 3.155 3.155 3.155 3.155 3.155 2.318 0.018 - 10.45 51.08 1964 0.016 0.016 0.026 0.695 2.856 3.145 3.145 3.145 3.145 3.145 0.746 0.075 - 10.45 51.08 1965 0.126 0.016 0.049 0.757 2.328 3.157 3.157 3.157 3.157 3.157 1.482 0.016 - 10.45 51.08 1966 0.036 0.217 0.641 1.437 3.083 3.138 3.138 3.138 3.138 3.138 0.560 0.016 - 10.45 51.08 1967 0.016 0.144 0.494 0.985 2.610 3.153 3.153 3.153 3.153 3.153 1.775 0.015 - 10.45 51.08 1968 0.015 0.022 0.145 1.524 3.106 3.121 3.121 3.121 3.121 3.121 1.094 0.015 - 10.45 51.08 1969 0.015 0.015 0.015 0.495 2.531 3.107 3.107 3.107 3.107 3.107 2.901 0.015 - 10.45 51.08 1970 0.014 0.014 0.032 0.357 2.218 3.067 3.067 3.067 3.067 3.067 3.067 0.154 - 10.45 51.08 1971 0.013 0.019 0.086 0.795 2.510 2.997 2.997 2.997 2.997 2.997 2.102 0.013 - 10.45 51.08 1972 0.023 0.013 0.181 1.073 2.587 2.966 2.966 2.966 2.966 2.966 1.785 0.013 - 10.45 51.08 1973 0.013 0.013 0.068 0.416 2.083 2.936 2.936 2.936 2.936 2.936 1.572 0.013 - 10.45 51.08 1974 0.032 0.184 0.469 1.715 2.737 2.899 2.899 2.899 2.899 2.899 0.014 0.038 - 10.45 51.08 1975 0.014 0.023 0.189 0.581 2.420 2.898 2.898 2.898 2.898 2.898 1.264 0.014 - 10.45 51.08 1976 0.015 0.015 0.043 0.857 2.430 2.855 2.855 2.855 2.855 2.855 1.908 0.015 - 10.45 51.08 1977 0.014 0.030 0.516 1.087 2.338 2.558 2.558 2.558 2.558 2.558 0.860 0.014 - 10.45 51.08 1978 0.015 0.019 0.229 0.836 2.114 2.575 2.575 2.575 2.575 2.575 1.210 0.018 - 10.45 51.08 1979 0.055 0.016 0.031 0.420 1.639 2.585 2.585 2.585 2.585 2.585 1.130 0.054 - 10.45 51.08 1980 0.094 0.022 0.052 0.495 1.557 2.577 2.577 2.577 2.577 2.577 0.615 0.149 - 10.45 51.08 1981 0.155 0.028 0.442 1.817 2.480 2.552 2.552 2.552 2.552 2.552 0.061 0.019 - 10.45 51.08 1982 0.019 0.019 0.044 0.618 1.838 2.589 2.589 2.589 2.589 2.589 2.460 0.019 - 10.45 51.08 1983 0.021 0.056 0.266 0.950 2.471 2.582 2.582 2.582 2.582 2.582 1.174 0.021 - 10.45 51.08 1984 0.021 0.021 0.028 0.357 1.862 2.611 2.611 2.611 2.611 2.611 1.748 0.021 - 10.45 51.08 1985 0.031 0.025 0.043 0.928 2.156 2.576 2.576 2.576 2.576 2.576 0.959 0.044 - 10.45 51.08 1986 0.079 0.023 0.052 0.340 2.267 2.615 2.615 2.615 2.615 2.615 2.314 0.022 - 10.45 51.08 1987 0.023 0.023 0.035 0.665 2.368 2.618 2.618 2.618 2.618 2.618 1.926 0.023 - 10.45 51.08 1988 0.024 0.025 0.056 0.615 2.338 2.624 2.624 2.624 2.624 2.624 1.844 0.024 - 10.45 51.08 1989 0.028 0.039 0.318 1.349 2.519 2.655 2.655 2.655 2.655 2.655 0.817 0.025 - 10.45 51.08 1990 0.027 0.194 1.066 2.030 2.719 2.725 2.725 2.725 2.725 1.909 0.027 0.027 - 10.45 51.08 1991 0.029 0.030 0.520 1.684 2.575 2.809 2.809 2.809 2.809 2.809 0.589 0.029 - 10.45 51.08 1992 0.030 0.045 0.286 0.796 2.484 2.820 2.820 2.820 2.820 2.820 0.309 0.030 - 10.45 51.08 1993 0.045 0.136 0.469 1.444 2.788 2.788 2.788 2.788 2.788 2.788 0.499 0.031 - 10.45 51.08 1994 0.031 0.038 0.418 1.225 2.771 2.816 2.816 2.816 2.816 2.816 0.915 0.031 - 10.45 51.08 1995 0.029 0.090 0.314 1.074 2.665 2.798 2.798 2.798 2.798 2.798 1.244 0.029 - 10.45 51.08 1996 0.028 0.028 0.040 0.599 2.475 2.754 2.754 2.754 2.754 2.754 2.118 0.028 - 10.45 51.08 1997 0.028 0.074 0.602 1.106 2.456 2.727 2.727 2.727 2.727 2.727 0.838 0.028 - 10.45 51.08 1998 0.029 0.192 0.817 1.951 2.738 2.738 2.738 2.738 2.738 2.266 0.029 0.029 - 10.45 51.08 1999 0.033 0.080 0.335 1.371 2.688 2.759 2.759 2.759 2.759 2.759 0.813 0.030 - 10.45 51.08 2000 0.030 0.095 0.431 1.309 2.791 2.791 2.791 2.791 2.791 2.791 0.731 0.030 - 10.45 51.08 2001 0.032 0.101 0.368 1.086 2.416 2.569 2.569 2.569 2.569 2.569 0.962 0.032 - 10.45 51.08 2002 0.041 0.519 1.056 1.731 2.563 2.580 2.580 2.580 2.580 1.677 0.031 0.031 - 10.45 51.08 2003 0.032 0.032 0.168 0.952 2.542 2.589 2.589 2.589 2.589 2.589 0.373 0.032 - 10.45 51.08 2004 0.034 0.237 0.664 1.607 2.603 2.603 2.603 2.603 2.603 2.439 0.034 0.034 - 10.45 51.08 2005 0.036 0.036 0.223 1.392 2.681 2.700 2.700 2.700 2.700 2.700 0.880 0.036 - 10.45 51.08 2006 0.037 0.037 0.078 0.938 2.591 2.755 2.755 2.755 2.755 2.755 1.668 0.037 - 10.45 51.08 2007 0.036 0.046 0.263 1.425 2.746 2.750 2.750 2.750 2.750 2.750 0.814 0.036 - 10.45 51.08 2008 0.070 0.234 0.687 1.245 2.662 2.806 2.806 2.806 2.806 2.806 0.551 0.040 - 10.45 51.08 2009 0.041 0.041 0.086 1.500 2.803 2.803 2.803 2.803 2.803 2.803 0.961 0.041 - 10.45 51.08 2010 0.042 0.042 0.269 1.448 2.781 2.824 2.824 2.824 2.824 2.824 0.880 0.042 - 10.45 51.08 2011 0.043 0.118 0.408 1.967 2.788 2.788 2.788 2.788 2.788 2.746 0.138 0.041 - 10.45 51.08 2012 0.044 0.046 0.425 1.453 2.852 2.861 2.861 2.861 2.861 2.861 0.751 0.044 diff --git a/rLPJGUESS/inst/extdata/outputsForTests/run_estinterval/outDirectory/mmon.out b/rLPJGUESS/inst/extdata/outputsForTests/run_estinterval/outDirectory/mmon.out deleted file mode 100644 index 8edc368..0000000 --- a/rLPJGUESS/inst/extdata/outputsForTests/run_estinterval/outDirectory/mmon.out +++ /dev/null @@ -1,63 +0,0 @@ - Lon Lat Year Jan Feb Mar Apr May Jun Jul Aug Sep Oct Nov Dec - 10.45 51.08 1951 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1952 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1953 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1954 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1955 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1956 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1957 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1958 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1959 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1960 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1961 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1962 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1963 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1964 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1965 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1966 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1967 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1968 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1969 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1970 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1971 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1972 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1973 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1974 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1975 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1976 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1977 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1978 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1979 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1980 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1981 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1982 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1983 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1984 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1985 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1986 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1987 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1988 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1989 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1990 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1991 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1992 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1993 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1994 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1995 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1996 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1997 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1998 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1999 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 2000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 2001 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 2002 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 2003 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 2004 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 2005 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 2006 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 2007 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 2008 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 2009 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 2010 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 2011 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 2012 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 diff --git a/rLPJGUESS/inst/extdata/outputsForTests/run_estinterval/outDirectory/mnee.out b/rLPJGUESS/inst/extdata/outputsForTests/run_estinterval/outDirectory/mnee.out deleted file mode 100644 index 9b4196c..0000000 --- a/rLPJGUESS/inst/extdata/outputsForTests/run_estinterval/outDirectory/mnee.out +++ /dev/null @@ -1,63 +0,0 @@ - Lon Lat Year Jan Feb Mar Apr May Jun Jul Aug Sep Oct Nov Dec - 10.45 51.08 1951 -0.020 -0.016 -0.015 -0.002 0.058 0.087 0.065 0.042 0.019 0.008 -0.016 -0.016 - 10.45 51.08 1952 -0.015 -0.007 -0.018 0.007 0.085 0.076 0.012 -0.007 0.026 0.007 -0.012 -0.008 - 10.45 51.08 1953 -0.008 -0.010 -0.017 0.040 0.050 0.043 0.051 0.043 0.024 -0.002 -0.022 -0.020 - 10.45 51.08 1954 -0.008 -0.004 -0.021 -0.006 0.069 0.044 0.054 0.044 0.014 0.008 -0.015 -0.019 - 10.45 51.08 1955 -0.007 -0.009 -0.009 -0.007 0.063 0.065 0.032 0.033 0.021 0.003 -0.012 -0.015 - 10.45 51.08 1956 -0.017 -0.001 -0.014 -0.010 0.063 0.057 0.057 0.057 0.029 -0.003 -0.014 -0.018 - 10.45 51.08 1957 -0.011 -0.023 -0.013 0.029 0.068 0.055 0.012 0.051 0.024 0.006 -0.023 -0.011 - 10.45 51.08 1958 -0.014 -0.019 -0.008 -0.005 0.051 0.062 0.056 0.043 0.019 0.002 -0.016 -0.016 - 10.45 51.08 1959 -0.015 -0.008 -0.019 0.024 0.078 0.068 -0.005 0.025 0.052 0.016 -0.017 -0.012 - 10.45 51.08 1960 -0.015 -0.009 -0.019 -0.009 0.059 0.063 0.064 0.042 0.026 0.005 -0.016 -0.013 - 10.45 51.08 1961 -0.009 -0.020 -0.023 0.023 0.064 0.076 0.032 0.044 0.005 -0.011 -0.022 -0.012 - 10.45 51.08 1962 -0.017 -0.012 -0.008 -0.016 0.050 0.068 0.062 0.041 0.036 -0.003 -0.011 -0.006 - 10.45 51.08 1963 -0.002 -0.002 -0.015 -0.008 0.058 0.058 0.050 0.043 0.028 0.003 -0.014 -0.007 - 10.45 51.08 1964 -0.005 -0.009 -0.010 -0.009 0.077 0.063 0.045 0.035 0.025 -0.002 -0.021 -0.013 - 10.45 51.08 1965 -0.014 -0.006 -0.013 -0.016 0.053 0.071 0.051 0.063 0.035 0.000 -0.011 -0.015 - 10.45 51.08 1966 -0.008 -0.015 -0.018 0.010 0.079 0.057 0.067 0.051 0.028 -0.006 -0.014 -0.014 - 10.45 51.08 1967 -0.014 -0.018 -0.020 -0.005 0.056 0.073 0.054 0.030 0.022 -0.001 -0.015 -0.011 - 10.45 51.08 1968 -0.009 -0.014 -0.015 -0.001 0.065 0.070 0.051 0.033 0.019 -0.001 -0.016 -0.007 - 10.45 51.08 1969 -0.011 -0.008 -0.007 -0.017 0.055 0.077 0.039 0.005 0.038 0.006 -0.015 -0.004 - 10.45 51.08 1970 -0.005 -0.007 -0.011 -0.017 0.045 0.062 0.052 0.043 0.033 -0.006 -0.015 -0.013 - 10.45 51.08 1971 -0.009 -0.016 -0.013 -0.014 0.037 0.061 0.067 0.012 0.035 0.006 -0.012 -0.018 - 10.45 51.08 1972 -0.008 -0.012 -0.021 -0.006 0.058 0.090 0.036 0.050 0.028 0.003 -0.013 -0.013 - 10.45 51.08 1973 -0.009 -0.014 -0.019 -0.018 0.049 0.056 0.030 0.043 0.016 0.004 -0.013 -0.009 - 10.45 51.08 1974 -0.021 -0.019 -0.012 0.013 0.070 0.082 0.069 0.032 0.026 -0.008 -0.021 -0.021 - 10.45 51.08 1975 -0.026 -0.014 -0.020 -0.008 0.058 0.064 0.046 0.027 0.015 -0.010 -0.013 -0.013 - 10.45 51.08 1976 -0.018 -0.008 -0.013 -0.013 0.059 0.067 0.008 0.057 0.013 -0.004 -0.014 -0.011 - 10.45 51.08 1977 -0.010 -0.017 -0.020 0.004 0.078 0.041 0.054 0.033 0.017 0.002 -0.016 -0.012 - 10.45 51.08 1978 -0.014 -0.007 -0.021 -0.007 0.047 0.045 0.062 0.034 0.021 0.004 -0.018 -0.011 - 10.45 51.08 1979 -0.004 -0.004 -0.016 -0.016 0.030 0.037 0.054 0.039 0.019 -0.002 -0.012 -0.019 - 10.45 51.08 1980 -0.006 -0.015 -0.017 -0.016 0.036 0.062 0.048 0.026 0.019 0.002 -0.018 -0.011 - 10.45 51.08 1981 -0.008 -0.008 -0.012 0.013 0.062 0.053 0.034 0.038 0.026 0.002 -0.020 -0.007 - 10.45 51.08 1982 -0.007 -0.009 -0.020 -0.013 0.039 0.032 0.027 0.021 0.011 -0.004 -0.013 -0.015 - 10.45 51.08 1983 -0.023 -0.008 -0.019 0.008 0.061 0.063 0.030 0.031 0.026 -0.002 -0.012 -0.011 - 10.45 51.08 1984 -0.018 -0.009 -0.013 -0.014 0.032 0.071 0.055 0.037 0.017 0.006 -0.015 -0.012 - 10.45 51.08 1985 -0.004 -0.006 -0.015 -0.010 0.048 0.057 0.065 0.045 0.027 -0.011 -0.009 -0.018 - 10.45 51.08 1986 -0.010 -0.003 -0.015 -0.013 0.047 0.057 0.038 0.030 0.038 0.010 -0.010 -0.015 - 10.45 51.08 1987 -0.005 -0.006 -0.008 -0.007 0.057 0.069 0.050 0.048 0.016 0.004 -0.014 -0.012 - 10.45 51.08 1988 -0.022 -0.015 -0.015 -0.012 0.064 0.049 0.066 0.038 0.019 -0.003 -0.014 -0.015 - 10.45 51.08 1989 -0.019 -0.016 -0.021 0.002 0.097 0.080 0.047 0.036 0.017 0.007 -0.013 -0.015 - 10.45 51.08 1990 -0.016 -0.023 -0.004 0.023 0.107 0.070 0.079 0.020 0.023 0.000 -0.023 -0.011 - 10.45 51.08 1991 -0.019 -0.006 -0.023 0.015 0.055 0.081 0.034 0.036 0.025 0.001 -0.016 -0.011 - 10.45 51.08 1992 -0.016 -0.015 -0.022 -0.004 0.077 0.043 0.050 0.016 0.038 -0.008 -0.020 -0.014 - 10.45 51.08 1993 -0.018 -0.006 -0.012 0.018 0.065 0.069 0.061 0.051 0.027 -0.002 -0.011 -0.014 - 10.45 51.08 1994 -0.020 -0.011 -0.019 0.008 0.077 0.073 0.022 0.022 0.036 0.002 -0.017 -0.019 - 10.45 51.08 1995 -0.012 -0.021 -0.018 0.000 0.067 0.061 0.039 0.037 0.024 0.006 -0.015 -0.006 - 10.45 51.08 1996 -0.004 -0.005 -0.012 -0.010 0.047 0.058 0.073 0.039 0.021 0.003 -0.013 -0.008 - 10.45 51.08 1997 -0.006 -0.018 -0.018 0.002 0.060 0.059 0.051 0.030 0.037 -0.004 -0.014 -0.014 - 10.45 51.08 1998 -0.022 -0.017 -0.015 0.025 0.083 0.063 0.051 0.032 0.025 -0.004 -0.014 -0.011 - 10.45 51.08 1999 -0.021 -0.010 -0.019 0.011 0.079 0.084 0.048 0.042 0.020 -0.005 -0.013 -0.015 - 10.45 51.08 2000 -0.013 -0.018 -0.018 0.010 0.069 0.046 0.049 0.047 0.025 0.008 -0.021 -0.020 - 10.45 51.08 2001 -0.014 -0.018 -0.016 0.003 0.090 0.070 0.066 0.019 0.017 0.006 -0.015 -0.011 - 10.45 51.08 2002 -0.011 -0.023 -0.007 0.022 0.064 0.058 0.030 0.024 0.021 -0.006 -0.021 -0.010 - 10.45 51.08 2003 -0.012 -0.006 -0.020 0.001 0.058 0.061 0.026 -0.013 0.031 -0.005 -0.019 -0.014 - 10.45 51.08 2004 -0.013 -0.018 -0.009 0.032 0.076 0.069 0.067 0.023 0.030 0.005 -0.023 -0.011 - 10.45 51.08 2005 -0.019 -0.007 -0.012 0.017 0.062 0.053 0.042 0.050 0.032 0.016 -0.014 -0.012 - 10.45 51.08 2006 -0.007 -0.008 -0.010 -0.004 0.074 0.067 0.010 0.034 0.036 0.004 -0.020 -0.022 - 10.45 51.08 2007 -0.028 -0.019 -0.022 0.023 0.078 0.065 0.056 0.062 0.034 0.004 -0.014 -0.014 - 10.45 51.08 2008 -0.023 -0.017 -0.014 0.010 0.084 0.061 0.047 0.022 0.017 0.006 -0.020 -0.012 - 10.45 51.08 2009 -0.007 -0.011 -0.023 0.019 0.084 0.068 0.045 0.035 0.023 -0.006 -0.024 -0.013 - 10.45 51.08 2010 -0.005 -0.007 -0.015 0.017 0.052 0.069 0.020 0.038 0.031 0.007 -0.018 -0.005 - 10.45 51.08 2011 -0.015 -0.012 -0.014 0.043 0.080 0.049 0.062 0.029 0.033 0.002 -0.018 -0.019 - 10.45 51.08 2012 -0.020 -0.007 -0.022 0.004 0.067 0.066 0.057 0.042 0.028 0.006 -0.019 -0.014 diff --git a/rLPJGUESS/inst/extdata/outputsForTests/run_estinterval/outDirectory/mnpp.out b/rLPJGUESS/inst/extdata/outputsForTests/run_estinterval/outDirectory/mnpp.out deleted file mode 100644 index 8d8c4b0..0000000 --- a/rLPJGUESS/inst/extdata/outputsForTests/run_estinterval/outDirectory/mnpp.out +++ /dev/null @@ -1,63 +0,0 @@ - Lon Lat Year Jan Feb Mar Apr May Jun Jul Aug Sep Oct Nov Dec - 10.45 51.08 1951 -0.010 -0.008 -0.007 0.022 0.105 0.128 0.121 0.088 0.061 0.026 -0.006 -0.011 - 10.45 51.08 1952 -0.008 -0.007 -0.009 0.039 0.125 0.130 0.092 0.059 0.048 0.018 -0.006 -0.007 - 10.45 51.08 1953 -0.006 -0.007 -0.001 0.080 0.107 0.097 0.105 0.096 0.068 0.026 -0.011 -0.012 - 10.45 51.08 1954 -0.006 -0.004 -0.010 0.013 0.115 0.112 0.096 0.085 0.051 0.026 -0.005 -0.013 - 10.45 51.08 1955 -0.006 -0.005 -0.007 0.011 0.107 0.115 0.084 0.071 0.057 0.024 -0.005 -0.011 - 10.45 51.08 1956 -0.009 -0.001 -0.010 0.006 0.106 0.100 0.100 0.097 0.065 0.020 -0.007 -0.012 - 10.45 51.08 1957 -0.008 -0.011 0.006 0.054 0.104 0.115 0.073 0.090 0.052 0.021 -0.014 -0.008 - 10.45 51.08 1958 -0.008 -0.010 -0.005 0.008 0.094 0.107 0.109 0.095 0.062 0.023 -0.009 -0.012 - 10.45 51.08 1959 -0.009 -0.006 -0.002 0.055 0.123 0.117 0.068 0.075 0.091 0.037 -0.011 -0.010 - 10.45 51.08 1960 -0.009 -0.007 -0.009 0.014 0.093 0.118 0.118 0.084 0.053 0.018 -0.007 -0.009 - 10.45 51.08 1961 -0.007 -0.012 -0.003 0.047 0.091 0.115 0.094 0.087 0.054 0.023 -0.012 -0.009 - 10.45 51.08 1962 -0.011 -0.007 -0.007 0.003 0.082 0.121 0.107 0.095 0.068 0.021 -0.005 -0.006 - 10.45 51.08 1963 -0.002 -0.002 -0.011 0.012 0.099 0.111 0.106 0.083 0.060 0.018 -0.005 -0.005 - 10.45 51.08 1964 -0.005 -0.007 -0.008 0.010 0.117 0.130 0.108 0.084 0.064 0.014 -0.014 -0.009 - 10.45 51.08 1965 -0.010 -0.005 -0.010 0.004 0.084 0.111 0.099 0.105 0.063 0.021 -0.006 -0.012 - 10.45 51.08 1966 -0.006 -0.009 -0.007 0.029 0.125 0.109 0.100 0.088 0.055 0.019 -0.010 -0.010 - 10.45 51.08 1967 -0.010 -0.010 -0.006 0.011 0.099 0.108 0.113 0.079 0.048 0.022 -0.007 -0.009 - 10.45 51.08 1968 -0.007 -0.008 -0.009 0.025 0.098 0.117 0.111 0.078 0.047 0.015 -0.009 -0.006 - 10.45 51.08 1969 -0.009 -0.005 -0.007 -0.004 0.089 0.114 0.100 0.065 0.061 0.025 -0.004 -0.004 - 10.45 51.08 1970 -0.005 -0.007 -0.009 -0.005 0.076 0.118 0.108 0.079 0.064 0.010 -0.007 -0.009 - 10.45 51.08 1971 -0.007 -0.009 -0.009 0.008 0.080 0.101 0.124 0.074 0.068 0.026 -0.005 -0.014 - 10.45 51.08 1972 -0.005 -0.009 -0.010 0.013 0.085 0.126 0.083 0.082 0.050 0.015 -0.005 -0.009 - 10.45 51.08 1973 -0.007 -0.008 -0.011 -0.005 0.084 0.109 0.093 0.094 0.051 0.016 -0.008 -0.008 - 10.45 51.08 1974 -0.013 -0.010 -0.003 0.037 0.096 0.114 0.104 0.076 0.059 0.002 -0.015 -0.016 - 10.45 51.08 1975 -0.015 -0.008 -0.011 0.004 0.090 0.100 0.098 0.086 0.050 0.008 -0.007 -0.010 - 10.45 51.08 1976 -0.011 -0.007 -0.009 0.006 0.097 0.109 0.080 0.099 0.044 0.015 -0.008 -0.008 - 10.45 51.08 1977 -0.008 -0.010 -0.004 0.015 0.112 0.081 0.095 0.065 0.044 0.020 -0.005 -0.009 - 10.45 51.08 1978 -0.008 -0.006 -0.010 0.011 0.076 0.101 0.102 0.079 0.046 0.020 -0.010 -0.009 - 10.45 51.08 1979 -0.004 -0.004 -0.011 -0.002 0.060 0.098 0.093 0.085 0.054 0.019 -0.007 -0.013 - 10.45 51.08 1980 -0.005 -0.009 -0.010 -0.002 0.063 0.110 0.085 0.084 0.056 0.019 -0.013 -0.009 - 10.45 51.08 1981 -0.006 -0.006 -0.002 0.036 0.090 0.095 0.085 0.075 0.056 0.016 -0.014 -0.005 - 10.45 51.08 1982 -0.007 -0.006 -0.012 0.006 0.073 0.095 0.087 0.078 0.054 0.018 -0.002 -0.010 - 10.45 51.08 1983 -0.013 -0.005 -0.009 0.022 0.088 0.104 0.093 0.077 0.059 0.019 -0.005 -0.009 - 10.45 51.08 1984 -0.009 -0.006 -0.009 -0.002 0.054 0.102 0.092 0.075 0.041 0.021 -0.008 -0.009 - 10.45 51.08 1985 -0.004 -0.005 -0.010 0.011 0.087 0.098 0.112 0.087 0.057 0.016 -0.005 -0.014 - 10.45 51.08 1986 -0.008 -0.002 -0.010 -0.003 0.086 0.094 0.094 0.078 0.055 0.027 -0.003 -0.010 - 10.45 51.08 1987 -0.004 -0.006 -0.007 0.011 0.083 0.093 0.097 0.078 0.047 0.019 -0.008 -0.010 - 10.45 51.08 1988 -0.012 -0.009 -0.010 0.005 0.107 0.095 0.106 0.088 0.052 0.020 -0.007 -0.012 - 10.45 51.08 1989 -0.011 -0.010 -0.008 0.021 0.131 0.119 0.098 0.083 0.049 0.024 -0.006 -0.012 - 10.45 51.08 1990 -0.011 -0.012 0.011 0.038 0.147 0.100 0.119 0.071 0.047 0.018 -0.015 -0.009 - 10.45 51.08 1991 -0.011 -0.006 -0.007 0.033 0.076 0.117 0.093 0.074 0.062 0.023 -0.010 -0.009 - 10.45 51.08 1992 -0.010 -0.010 -0.011 0.011 0.118 0.089 0.090 0.065 0.061 0.004 -0.015 -0.010 - 10.45 51.08 1993 -0.013 -0.006 -0.005 0.040 0.116 0.103 0.092 0.088 0.047 0.011 -0.008 -0.012 - 10.45 51.08 1994 -0.013 -0.007 -0.009 0.023 0.112 0.108 0.075 0.069 0.056 0.013 -0.010 -0.015 - 10.45 51.08 1995 -0.009 -0.013 -0.009 0.016 0.096 0.088 0.086 0.085 0.044 0.021 -0.009 -0.006 - 10.45 51.08 1996 -0.004 -0.005 -0.009 0.007 0.073 0.101 0.104 0.075 0.038 0.016 -0.006 -0.006 - 10.45 51.08 1997 -0.005 -0.012 -0.005 0.015 0.096 0.107 0.091 0.075 0.068 0.011 -0.010 -0.011 - 10.45 51.08 1998 -0.013 -0.011 -0.003 0.044 0.120 0.104 0.087 0.078 0.043 0.005 -0.010 -0.010 - 10.45 51.08 1999 -0.013 -0.008 -0.009 0.030 0.114 0.118 0.086 0.081 0.057 0.012 -0.007 -0.012 - 10.45 51.08 2000 -0.009 -0.012 -0.009 0.029 0.119 0.092 0.080 0.085 0.046 0.021 -0.013 -0.014 - 10.45 51.08 2001 -0.010 -0.011 -0.009 0.015 0.123 0.103 0.103 0.070 0.040 0.024 -0.009 -0.009 - 10.45 51.08 2002 -0.009 -0.010 0.003 0.036 0.096 0.100 0.071 0.064 0.052 0.005 -0.015 -0.008 - 10.45 51.08 2003 -0.009 -0.004 -0.011 0.020 0.104 0.112 0.084 0.053 0.061 0.007 -0.013 -0.010 - 10.45 51.08 2004 -0.008 -0.011 -0.001 0.051 0.101 0.110 0.106 0.081 0.066 0.024 -0.014 -0.008 - 10.45 51.08 2005 -0.012 -0.006 -0.007 0.039 0.093 0.102 0.094 0.081 0.062 0.032 -0.003 -0.009 - 10.45 51.08 2006 -0.005 -0.006 -0.009 0.014 0.114 0.105 0.071 0.071 0.067 0.024 -0.009 -0.015 - 10.45 51.08 2007 -0.017 -0.012 -0.008 0.049 0.119 0.104 0.092 0.092 0.056 0.017 -0.009 -0.011 - 10.45 51.08 2008 -0.015 -0.009 -0.003 0.022 0.124 0.112 0.092 0.074 0.046 0.019 -0.014 -0.010 - 10.45 51.08 2009 -0.006 -0.008 -0.014 0.047 0.116 0.102 0.089 0.085 0.054 0.006 -0.017 -0.010 - 10.45 51.08 2010 -0.005 -0.007 -0.007 0.040 0.076 0.115 0.077 0.066 0.052 0.018 -0.011 -0.004 - 10.45 51.08 2011 -0.011 -0.009 -0.005 0.076 0.126 0.102 0.098 0.066 0.061 0.020 -0.012 -0.015 - 10.45 51.08 2012 -0.012 -0.006 -0.005 0.024 0.110 0.099 0.093 0.085 0.059 0.022 -0.013 -0.012 diff --git a/rLPJGUESS/inst/extdata/outputsForTests/run_estinterval/outDirectory/mpet.out b/rLPJGUESS/inst/extdata/outputsForTests/run_estinterval/outDirectory/mpet.out deleted file mode 100644 index d98d912..0000000 --- a/rLPJGUESS/inst/extdata/outputsForTests/run_estinterval/outDirectory/mpet.out +++ /dev/null @@ -1,63 +0,0 @@ - Lon Lat Year Jan Feb Mar Apr May Jun Jul Aug Sep Oct Nov Dec - 10.45 51.08 1951 3.846 7.475 17.228 57.795 82.178 110.473 115.329 94.908 63.601 28.899 8.600 3.395 - 10.45 51.08 1952 3.675 6.190 16.305 63.643 92.578 110.498 126.158 96.896 44.894 24.430 7.364 2.737 - 10.45 51.08 1953 3.273 6.960 32.653 72.186 105.382 94.448 111.422 97.466 62.656 29.793 6.453 3.516 - 10.45 51.08 1954 3.338 5.968 20.313 45.633 99.844 109.628 84.543 87.688 56.677 29.880 9.564 3.425 - 10.45 51.08 1955 3.873 6.323 16.636 47.913 89.800 99.748 92.631 78.265 56.952 27.417 7.297 3.366 - 10.45 51.08 1956 4.284 4.065 19.328 39.588 101.627 86.408 105.155 85.125 57.936 28.694 7.092 3.423 - 10.45 51.08 1957 4.340 8.794 30.455 58.860 86.080 129.237 107.869 86.177 50.867 26.036 5.951 3.192 - 10.45 51.08 1958 4.244 9.639 15.480 37.608 93.352 98.497 114.409 102.970 65.630 29.690 7.310 3.511 - 10.45 51.08 1959 4.571 7.848 26.787 64.773 96.357 116.400 129.261 88.982 73.986 35.254 5.840 3.247 - 10.45 51.08 1960 3.957 7.205 17.868 48.507 89.698 122.905 104.737 86.659 52.703 26.664 9.721 3.274 - 10.45 51.08 1961 3.677 10.954 27.700 52.805 75.303 113.458 98.405 86.959 69.244 31.084 5.494 3.243 - 10.45 51.08 1962 4.678 7.370 16.648 46.998 72.076 111.525 96.477 93.377 61.865 28.627 7.465 2.973 - 10.45 51.08 1963 2.725 5.407 18.614 46.926 92.341 106.061 120.262 92.693 60.508 26.209 11.082 3.003 - 10.45 51.08 1964 3.871 8.471 14.587 49.691 105.015 137.596 126.410 92.920 64.071 24.594 5.978 3.461 - 10.45 51.08 1965 4.601 6.395 17.882 44.888 83.553 106.676 97.864 95.552 56.989 29.091 6.554 3.560 - 10.45 51.08 1966 3.684 10.387 21.856 49.965 104.962 119.595 93.935 90.668 54.489 31.374 5.985 3.485 - 10.45 51.08 1967 4.609 9.964 27.319 44.811 101.551 100.175 132.008 89.276 53.060 32.550 8.514 3.326 - 10.45 51.08 1968 3.932 7.848 26.585 65.489 80.536 108.216 113.864 86.825 51.765 26.370 7.947 2.746 - 10.45 51.08 1969 4.430 6.897 12.755 42.542 91.267 109.045 123.452 95.234 60.382 28.868 10.625 2.402 - 10.45 51.08 1970 3.617 6.976 17.407 33.697 79.732 126.059 110.486 87.588 63.261 23.919 10.005 3.558 - 10.45 51.08 1971 4.676 7.932 16.897 51.521 91.913 89.094 135.327 109.905 60.866 33.705 8.777 3.927 - 10.45 51.08 1972 3.873 8.104 28.511 44.277 82.220 109.577 104.369 86.296 49.823 27.227 9.417 4.072 - 10.45 51.08 1973 4.403 8.652 22.621 35.587 91.149 107.188 109.582 106.510 62.328 27.459 8.905 3.639 - 10.45 51.08 1974 5.263 8.820 26.214 59.592 80.964 98.171 96.812 92.867 62.968 20.174 6.490 4.371 - 10.45 51.08 1975 5.827 9.018 21.666 46.723 88.344 94.089 117.956 115.289 61.970 23.778 7.744 3.513 - 10.45 51.08 1976 4.479 7.981 19.088 50.509 102.087 122.029 134.989 98.939 48.862 27.434 8.944 3.633 - 10.45 51.08 1977 4.992 10.356 26.972 45.538 94.368 86.422 104.714 76.393 52.494 29.424 10.352 4.052 - 10.45 51.08 1978 4.938 7.909 25.126 49.134 79.633 98.897 101.836 88.458 49.490 28.605 8.423 3.640 - 10.45 51.08 1979 3.940 7.183 20.426 40.188 93.650 110.691 91.188 88.610 61.113 29.940 8.892 4.500 - 10.45 51.08 1980 4.097 10.234 17.225 42.573 93.635 102.876 85.607 98.201 60.914 27.643 6.569 3.870 - 10.45 51.08 1981 4.830 7.579 29.310 56.351 91.590 99.166 93.420 88.150 59.032 27.355 7.591 3.124 - 10.45 51.08 1982 4.255 9.145 24.490 54.339 94.928 114.439 119.749 102.585 72.980 27.141 11.885 3.810 - 10.45 51.08 1983 5.845 7.931 23.130 53.516 79.450 111.855 135.630 100.708 62.742 29.739 9.110 3.632 - 10.45 51.08 1984 5.008 7.848 19.824 52.209 68.389 92.628 100.273 91.304 48.531 29.663 9.780 4.146 - 10.45 51.08 1985 3.877 7.960 17.769 52.755 93.706 92.671 122.906 93.791 60.673 29.981 7.309 4.577 - 10.45 51.08 1986 4.802 5.420 21.136 36.278 99.834 110.583 111.840 96.903 52.114 32.517 11.029 4.476 - 10.45 51.08 1987 3.360 7.521 17.560 58.291 78.506 86.490 112.694 83.393 59.820 29.200 8.478 3.824 - 10.45 51.08 1988 5.793 8.769 17.493 54.825 103.127 94.357 115.881 104.491 56.235 27.523 8.718 4.145 - 10.45 51.08 1989 6.285 9.837 31.932 45.002 118.662 112.771 112.439 100.648 59.553 31.626 9.923 4.332 - 10.45 51.08 1990 5.618 14.963 35.765 54.008 115.648 96.092 115.139 109.135 47.578 33.130 7.286 3.881 - 10.45 51.08 1991 4.945 8.731 28.012 55.208 70.968 98.274 132.970 98.344 70.526 32.233 7.758 3.616 - 10.45 51.08 1992 4.390 8.805 23.170 51.848 113.803 103.188 118.617 101.497 58.392 21.680 7.777 3.845 - 10.45 51.08 1993 5.272 7.312 25.956 66.578 108.055 104.276 105.592 95.113 48.819 25.402 5.363 3.921 - 10.45 51.08 1994 5.111 8.143 25.912 51.712 96.275 113.758 139.932 98.981 56.052 26.180 10.037 4.417 - 10.45 51.08 1995 4.897 10.624 23.228 49.689 91.319 89.664 133.909 112.766 48.883 31.731 7.469 2.934 - 10.45 51.08 1996 3.615 7.984 16.394 58.004 70.402 113.133 99.813 89.969 40.207 26.005 9.173 3.235 - 10.45 51.08 1997 4.063 10.644 27.412 51.341 93.500 110.855 101.429 106.567 67.781 26.757 7.547 3.653 - 10.45 51.08 1998 5.541 11.868 26.573 56.048 103.549 108.300 96.095 97.024 49.194 22.297 6.012 3.999 - 10.45 51.08 1999 5.649 8.726 23.736 53.903 103.177 104.267 115.345 94.178 74.057 24.674 7.719 3.958 - 10.45 51.08 2000 4.907 10.551 23.432 62.463 109.704 117.447 78.421 102.585 54.210 29.008 8.903 4.485 - 10.45 51.08 2001 5.005 9.372 18.292 44.841 110.056 92.353 123.815 98.695 43.505 33.564 8.691 3.329 - 10.45 51.08 2002 5.822 13.072 28.846 53.220 87.829 109.843 97.403 92.126 57.710 23.746 7.267 3.545 - 10.45 51.08 2003 5.033 8.242 28.788 64.063 96.311 138.185 115.502 125.963 63.374 23.292 8.880 4.418 - 10.45 51.08 2004 4.876 9.251 28.301 65.052 85.156 102.415 106.114 106.998 67.713 32.355 6.851 3.944 - 10.45 51.08 2005 5.443 7.616 25.854 62.654 99.066 118.849 115.972 83.875 72.069 34.783 10.682 3.835 - 10.45 51.08 2006 4.387 7.545 18.720 52.464 101.489 123.369 154.697 76.522 76.583 32.565 11.022 4.826 - 10.45 51.08 2007 5.826 10.368 30.997 82.393 107.768 117.355 112.386 97.048 53.915 25.856 7.589 3.801 - 10.45 51.08 2008 6.081 11.959 25.892 47.490 104.416 119.454 115.883 92.338 51.469 28.583 6.823 3.461 - 10.45 51.08 2009 4.437 7.755 18.744 75.319 95.292 88.039 111.149 105.703 60.725 23.041 9.275 3.641 - 10.45 51.08 2010 3.390 7.506 26.010 63.659 68.756 119.612 135.708 80.774 51.164 27.597 8.213 2.666 - 10.45 51.08 2011 5.043 9.202 32.847 75.999 110.613 111.347 98.194 87.909 66.667 33.689 8.825 4.245 - 10.45 51.08 2012 5.070 7.510 35.527 48.801 105.860 93.115 107.509 105.476 61.565 29.740 7.916 3.820 diff --git a/rLPJGUESS/inst/extdata/outputsForTests/run_estinterval/outDirectory/mra.out b/rLPJGUESS/inst/extdata/outputsForTests/run_estinterval/outDirectory/mra.out deleted file mode 100644 index 55a602c..0000000 --- a/rLPJGUESS/inst/extdata/outputsForTests/run_estinterval/outDirectory/mra.out +++ /dev/null @@ -1,63 +0,0 @@ - Lon Lat Year Jan Feb Mar Apr May Jun Jul Aug Sep Oct Nov Dec - 10.45 51.08 1951 0.010 0.009 0.011 0.028 0.070 0.092 0.100 0.090 0.070 0.034 0.021 0.011 - 10.45 51.08 1952 0.008 0.007 0.011 0.045 0.082 0.093 0.100 0.088 0.051 0.032 0.012 0.007 - 10.45 51.08 1953 0.006 0.008 0.018 0.055 0.083 0.085 0.099 0.092 0.069 0.044 0.016 0.012 - 10.45 51.08 1954 0.006 0.004 0.014 0.023 0.079 0.094 0.082 0.086 0.066 0.044 0.020 0.013 - 10.45 51.08 1955 0.006 0.006 0.010 0.024 0.073 0.087 0.089 0.082 0.066 0.037 0.016 0.011 - 10.45 51.08 1956 0.009 0.001 0.012 0.020 0.077 0.078 0.092 0.081 0.065 0.039 0.013 0.012 - 10.45 51.08 1957 0.009 0.013 0.024 0.041 0.068 0.098 0.094 0.083 0.057 0.038 0.015 0.008 - 10.45 51.08 1958 0.008 0.012 0.008 0.019 0.076 0.085 0.098 0.095 0.072 0.042 0.017 0.012 - 10.45 51.08 1959 0.009 0.007 0.020 0.047 0.082 0.092 0.098 0.088 0.075 0.041 0.012 0.010 - 10.45 51.08 1960 0.009 0.007 0.014 0.026 0.072 0.096 0.093 0.085 0.061 0.038 0.021 0.009 - 10.45 51.08 1961 0.007 0.013 0.020 0.048 0.064 0.092 0.087 0.084 0.077 0.047 0.012 0.009 - 10.45 51.08 1962 0.011 0.007 0.008 0.028 0.059 0.090 0.086 0.089 0.065 0.040 0.013 0.006 - 10.45 51.08 1963 0.002 0.002 0.012 0.028 0.072 0.089 0.101 0.086 0.066 0.035 0.023 0.005 - 10.45 51.08 1964 0.005 0.007 0.008 0.030 0.084 0.106 0.104 0.088 0.069 0.032 0.016 0.009 - 10.45 51.08 1965 0.010 0.005 0.011 0.022 0.064 0.089 0.088 0.089 0.063 0.037 0.012 0.012 - 10.45 51.08 1966 0.006 0.013 0.014 0.036 0.086 0.096 0.087 0.086 0.062 0.047 0.011 0.010 - 10.45 51.08 1967 0.010 0.012 0.018 0.023 0.076 0.085 0.109 0.089 0.064 0.051 0.016 0.009 - 10.45 51.08 1968 0.007 0.008 0.016 0.038 0.069 0.093 0.097 0.086 0.062 0.041 0.017 0.006 - 10.45 51.08 1969 0.009 0.005 0.007 0.022 0.073 0.088 0.104 0.087 0.066 0.043 0.023 0.004 - 10.45 51.08 1970 0.005 0.007 0.009 0.019 0.061 0.099 0.094 0.086 0.069 0.035 0.023 0.010 - 10.45 51.08 1971 0.008 0.009 0.010 0.027 0.072 0.080 0.106 0.096 0.063 0.042 0.017 0.014 - 10.45 51.08 1972 0.005 0.009 0.017 0.026 0.066 0.090 0.092 0.083 0.052 0.029 0.018 0.010 - 10.45 51.08 1973 0.008 0.008 0.014 0.016 0.067 0.090 0.094 0.097 0.068 0.033 0.016 0.008 - 10.45 51.08 1974 0.013 0.011 0.018 0.036 0.066 0.082 0.086 0.087 0.067 0.023 0.015 0.016 - 10.45 51.08 1975 0.015 0.008 0.014 0.023 0.069 0.080 0.099 0.101 0.071 0.032 0.014 0.010 - 10.45 51.08 1976 0.011 0.007 0.010 0.024 0.074 0.093 0.103 0.089 0.058 0.040 0.017 0.008 - 10.45 51.08 1977 0.008 0.010 0.019 0.022 0.069 0.072 0.083 0.070 0.052 0.038 0.019 0.009 - 10.45 51.08 1978 0.008 0.006 0.015 0.022 0.057 0.078 0.082 0.077 0.051 0.035 0.014 0.009 - 10.45 51.08 1979 0.004 0.004 0.012 0.018 0.056 0.087 0.078 0.078 0.060 0.034 0.013 0.014 - 10.45 51.08 1980 0.005 0.010 0.011 0.017 0.049 0.081 0.074 0.085 0.062 0.033 0.013 0.009 - 10.45 51.08 1981 0.006 0.006 0.021 0.034 0.069 0.081 0.080 0.078 0.061 0.033 0.015 0.005 - 10.45 51.08 1982 0.007 0.006 0.013 0.021 0.061 0.086 0.095 0.090 0.074 0.038 0.023 0.010 - 10.45 51.08 1983 0.013 0.005 0.015 0.031 0.063 0.084 0.101 0.088 0.064 0.038 0.015 0.009 - 10.45 51.08 1984 0.009 0.007 0.010 0.020 0.049 0.076 0.081 0.083 0.053 0.041 0.017 0.009 - 10.45 51.08 1985 0.004 0.005 0.011 0.027 0.070 0.073 0.094 0.083 0.062 0.038 0.010 0.014 - 10.45 51.08 1986 0.008 0.002 0.012 0.018 0.076 0.080 0.090 0.085 0.052 0.042 0.021 0.011 - 10.45 51.08 1987 0.004 0.006 0.007 0.029 0.058 0.072 0.091 0.077 0.064 0.036 0.017 0.010 - 10.45 51.08 1988 0.013 0.009 0.011 0.024 0.080 0.079 0.095 0.092 0.062 0.039 0.015 0.012 - 10.45 51.08 1989 0.011 0.010 0.020 0.030 0.087 0.088 0.094 0.090 0.066 0.044 0.015 0.013 - 10.45 51.08 1990 0.011 0.017 0.027 0.035 0.094 0.083 0.098 0.096 0.055 0.043 0.016 0.009 - 10.45 51.08 1991 0.011 0.006 0.022 0.035 0.056 0.085 0.107 0.094 0.076 0.041 0.015 0.009 - 10.45 51.08 1992 0.010 0.011 0.016 0.028 0.089 0.090 0.101 0.099 0.066 0.028 0.016 0.011 - 10.45 51.08 1993 0.014 0.006 0.016 0.047 0.092 0.089 0.090 0.090 0.057 0.034 0.009 0.012 - 10.45 51.08 1994 0.013 0.008 0.021 0.034 0.083 0.094 0.114 0.096 0.064 0.032 0.023 0.015 - 10.45 51.08 1995 0.009 0.014 0.014 0.031 0.073 0.077 0.106 0.102 0.058 0.049 0.014 0.006 - 10.45 51.08 1996 0.005 0.006 0.009 0.032 0.059 0.089 0.088 0.088 0.047 0.037 0.020 0.006 - 10.45 51.08 1997 0.005 0.013 0.019 0.025 0.075 0.089 0.091 0.100 0.072 0.035 0.015 0.011 - 10.45 51.08 1998 0.014 0.015 0.018 0.044 0.087 0.093 0.088 0.091 0.059 0.032 0.011 0.010 - 10.45 51.08 1999 0.014 0.008 0.017 0.037 0.085 0.091 0.101 0.091 0.081 0.037 0.016 0.012 - 10.45 51.08 2000 0.010 0.013 0.018 0.042 0.093 0.093 0.079 0.099 0.065 0.045 0.021 0.015 - 10.45 51.08 2001 0.010 0.012 0.015 0.028 0.089 0.081 0.104 0.099 0.054 0.052 0.017 0.009 - 10.45 51.08 2002 0.010 0.016 0.019 0.034 0.075 0.089 0.084 0.089 0.061 0.030 0.016 0.008 - 10.45 51.08 2003 0.009 0.004 0.017 0.032 0.081 0.102 0.096 0.101 0.066 0.026 0.018 0.010 - 10.45 51.08 2004 0.008 0.012 0.017 0.043 0.069 0.084 0.091 0.097 0.069 0.042 0.014 0.009 - 10.45 51.08 2005 0.012 0.006 0.015 0.040 0.076 0.090 0.099 0.083 0.076 0.048 0.020 0.009 - 10.45 51.08 2006 0.005 0.007 0.011 0.031 0.083 0.092 0.114 0.080 0.083 0.051 0.026 0.016 - 10.45 51.08 2007 0.017 0.013 0.020 0.051 0.090 0.098 0.098 0.093 0.061 0.037 0.015 0.011 - 10.45 51.08 2008 0.016 0.013 0.017 0.031 0.090 0.100 0.102 0.096 0.060 0.040 0.018 0.010 - 10.45 51.08 2009 0.006 0.008 0.016 0.054 0.086 0.083 0.101 0.104 0.071 0.034 0.024 0.010 - 10.45 51.08 2010 0.005 0.007 0.020 0.041 0.062 0.098 0.113 0.086 0.062 0.037 0.020 0.004 - 10.45 51.08 2011 0.011 0.009 0.019 0.063 0.093 0.096 0.094 0.092 0.077 0.044 0.015 0.015 - 10.45 51.08 2012 0.012 0.007 0.025 0.036 0.092 0.088 0.101 0.105 0.073 0.042 0.019 0.012 diff --git a/rLPJGUESS/inst/extdata/outputsForTests/run_estinterval/outDirectory/mrh.out b/rLPJGUESS/inst/extdata/outputsForTests/run_estinterval/outDirectory/mrh.out deleted file mode 100644 index 6ff534d..0000000 --- a/rLPJGUESS/inst/extdata/outputsForTests/run_estinterval/outDirectory/mrh.out +++ /dev/null @@ -1,63 +0,0 @@ - Lon Lat Year Jan Feb Mar Apr May Jun Jul Aug Sep Oct Nov Dec - 10.45 51.08 1951 0.010 0.007 0.008 0.023 0.046 0.041 0.056 0.046 0.042 0.019 0.010 0.006 - 10.45 51.08 1952 0.007 0.001 0.009 0.031 0.040 0.054 0.080 0.066 0.022 0.011 0.006 0.001 - 10.45 51.08 1953 0.002 0.003 0.016 0.040 0.057 0.054 0.053 0.053 0.044 0.028 0.011 0.007 - 10.45 51.08 1954 0.002 0.000 0.011 0.018 0.047 0.068 0.042 0.040 0.036 0.018 0.010 0.006 - 10.45 51.08 1955 0.002 0.004 0.002 0.018 0.044 0.050 0.052 0.038 0.036 0.020 0.007 0.004 - 10.45 51.08 1956 0.008 0.000 0.005 0.016 0.043 0.043 0.043 0.041 0.036 0.023 0.006 0.006 - 10.45 51.08 1957 0.003 0.011 0.019 0.025 0.037 0.060 0.062 0.040 0.028 0.015 0.009 0.003 - 10.45 51.08 1958 0.006 0.009 0.002 0.012 0.043 0.045 0.053 0.052 0.044 0.021 0.007 0.004 - 10.45 51.08 1959 0.007 0.002 0.018 0.031 0.045 0.049 0.073 0.050 0.039 0.021 0.006 0.003 - 10.45 51.08 1960 0.006 0.002 0.010 0.023 0.033 0.055 0.054 0.042 0.028 0.013 0.009 0.004 - 10.45 51.08 1961 0.002 0.007 0.020 0.025 0.026 0.039 0.062 0.044 0.049 0.034 0.010 0.003 - 10.45 51.08 1962 0.006 0.005 0.001 0.019 0.032 0.053 0.045 0.054 0.032 0.024 0.007 0.001 - 10.45 51.08 1963 0.000 0.000 0.005 0.020 0.040 0.053 0.056 0.040 0.032 0.016 0.009 0.002 - 10.45 51.08 1964 0.000 0.002 0.002 0.019 0.040 0.068 0.062 0.049 0.039 0.016 0.007 0.004 - 10.45 51.08 1965 0.004 0.001 0.003 0.020 0.031 0.040 0.048 0.042 0.028 0.021 0.005 0.003 - 10.45 51.08 1966 0.002 0.006 0.011 0.019 0.047 0.052 0.033 0.038 0.027 0.025 0.004 0.003 - 10.45 51.08 1967 0.004 0.008 0.014 0.016 0.043 0.034 0.059 0.049 0.025 0.023 0.008 0.002 - 10.45 51.08 1968 0.002 0.005 0.006 0.026 0.032 0.046 0.059 0.045 0.028 0.016 0.007 0.001 - 10.45 51.08 1969 0.002 0.002 0.000 0.012 0.034 0.037 0.061 0.060 0.024 0.019 0.011 0.001 - 10.45 51.08 1970 0.000 0.000 0.002 0.012 0.030 0.056 0.056 0.036 0.031 0.016 0.008 0.004 - 10.45 51.08 1971 0.001 0.007 0.004 0.022 0.043 0.040 0.056 0.062 0.032 0.020 0.007 0.004 - 10.45 51.08 1972 0.002 0.003 0.011 0.019 0.027 0.036 0.047 0.032 0.023 0.012 0.008 0.003 - 10.45 51.08 1973 0.002 0.005 0.008 0.013 0.035 0.053 0.062 0.050 0.035 0.012 0.005 0.001 - 10.45 51.08 1974 0.008 0.009 0.009 0.024 0.026 0.033 0.035 0.044 0.034 0.011 0.006 0.005 - 10.45 51.08 1975 0.012 0.006 0.009 0.012 0.033 0.036 0.052 0.059 0.035 0.018 0.005 0.003 - 10.45 51.08 1976 0.007 0.001 0.004 0.019 0.038 0.042 0.071 0.042 0.031 0.019 0.006 0.003 - 10.45 51.08 1977 0.002 0.008 0.015 0.012 0.034 0.040 0.042 0.032 0.026 0.018 0.010 0.003 - 10.45 51.08 1978 0.006 0.001 0.012 0.018 0.029 0.056 0.040 0.045 0.025 0.016 0.008 0.003 - 10.45 51.08 1979 0.000 0.000 0.005 0.014 0.031 0.061 0.039 0.046 0.035 0.020 0.005 0.006 - 10.45 51.08 1980 0.001 0.006 0.007 0.014 0.027 0.048 0.036 0.059 0.037 0.017 0.005 0.003 - 10.45 51.08 1981 0.003 0.002 0.010 0.023 0.028 0.042 0.051 0.037 0.030 0.014 0.006 0.002 - 10.45 51.08 1982 0.000 0.003 0.008 0.019 0.034 0.063 0.060 0.057 0.044 0.022 0.011 0.005 - 10.45 51.08 1983 0.010 0.003 0.010 0.014 0.027 0.041 0.063 0.046 0.032 0.021 0.007 0.002 - 10.45 51.08 1984 0.009 0.003 0.004 0.012 0.022 0.031 0.037 0.038 0.024 0.016 0.007 0.003 - 10.45 51.08 1985 0.000 0.001 0.005 0.021 0.039 0.040 0.047 0.042 0.030 0.027 0.004 0.005 - 10.45 51.08 1986 0.003 0.001 0.004 0.010 0.038 0.036 0.056 0.047 0.018 0.017 0.007 0.004 - 10.45 51.08 1987 0.001 0.000 0.001 0.018 0.026 0.024 0.047 0.030 0.031 0.015 0.007 0.002 - 10.45 51.08 1988 0.010 0.006 0.005 0.017 0.043 0.046 0.041 0.050 0.033 0.023 0.007 0.003 - 10.45 51.08 1989 0.008 0.006 0.013 0.019 0.034 0.040 0.051 0.047 0.032 0.017 0.007 0.002 - 10.45 51.08 1990 0.005 0.011 0.016 0.015 0.040 0.030 0.040 0.050 0.023 0.018 0.007 0.002 - 10.45 51.08 1991 0.008 0.000 0.016 0.018 0.021 0.036 0.058 0.038 0.036 0.021 0.006 0.002 - 10.45 51.08 1992 0.006 0.005 0.010 0.014 0.040 0.046 0.040 0.049 0.023 0.012 0.005 0.003 - 10.45 51.08 1993 0.005 0.001 0.007 0.022 0.050 0.034 0.031 0.037 0.020 0.013 0.003 0.002 - 10.45 51.08 1994 0.007 0.003 0.010 0.015 0.036 0.036 0.053 0.048 0.020 0.011 0.008 0.004 - 10.45 51.08 1995 0.003 0.009 0.009 0.016 0.029 0.027 0.047 0.048 0.019 0.016 0.006 0.000 - 10.45 51.08 1996 0.000 0.000 0.003 0.017 0.025 0.043 0.031 0.036 0.017 0.013 0.007 0.002 - 10.45 51.08 1997 0.000 0.006 0.013 0.013 0.036 0.048 0.039 0.045 0.031 0.016 0.004 0.002 - 10.45 51.08 1998 0.009 0.006 0.012 0.020 0.036 0.040 0.036 0.046 0.018 0.009 0.004 0.001 - 10.45 51.08 1999 0.008 0.002 0.009 0.019 0.035 0.034 0.038 0.039 0.037 0.017 0.005 0.003 - 10.45 51.08 2000 0.004 0.006 0.009 0.019 0.049 0.046 0.031 0.038 0.021 0.014 0.008 0.005 - 10.45 51.08 2001 0.004 0.007 0.007 0.012 0.033 0.032 0.037 0.051 0.023 0.018 0.006 0.002 - 10.45 51.08 2002 0.002 0.013 0.010 0.014 0.032 0.041 0.041 0.040 0.031 0.011 0.006 0.002 - 10.45 51.08 2003 0.003 0.002 0.009 0.020 0.046 0.051 0.058 0.067 0.030 0.013 0.006 0.004 - 10.45 51.08 2004 0.005 0.007 0.008 0.019 0.024 0.040 0.038 0.059 0.035 0.019 0.009 0.002 - 10.45 51.08 2005 0.007 0.001 0.005 0.022 0.031 0.049 0.051 0.031 0.030 0.016 0.010 0.003 - 10.45 51.08 2006 0.001 0.002 0.001 0.018 0.039 0.038 0.061 0.036 0.031 0.020 0.011 0.007 - 10.45 51.08 2007 0.012 0.007 0.014 0.026 0.040 0.039 0.036 0.030 0.022 0.012 0.005 0.003 - 10.45 51.08 2008 0.008 0.008 0.011 0.012 0.040 0.051 0.045 0.052 0.029 0.013 0.006 0.002 - 10.45 51.08 2009 0.001 0.003 0.009 0.028 0.032 0.034 0.045 0.051 0.031 0.013 0.007 0.003 - 10.45 51.08 2010 0.000 0.000 0.009 0.023 0.024 0.046 0.057 0.028 0.021 0.011 0.007 0.000 - 10.45 51.08 2011 0.004 0.003 0.009 0.032 0.046 0.052 0.036 0.037 0.028 0.018 0.006 0.005 - 10.45 51.08 2012 0.008 0.000 0.016 0.020 0.043 0.033 0.036 0.044 0.032 0.016 0.006 0.002 diff --git a/rLPJGUESS/inst/extdata/outputsForTests/run_estinterval/outDirectory/mrunoff.out b/rLPJGUESS/inst/extdata/outputsForTests/run_estinterval/outDirectory/mrunoff.out deleted file mode 100644 index 7106945..0000000 --- a/rLPJGUESS/inst/extdata/outputsForTests/run_estinterval/outDirectory/mrunoff.out +++ /dev/null @@ -1,63 +0,0 @@ - Lon Lat Year Jan Feb Mar Apr May Jun Jul Aug Sep Oct Nov Dec - 10.45 51.08 1951 0.000 3.740 12.976 3.252 0.000 61.718 0.000 0.000 0.000 0.000 35.034 9.318 - 10.45 51.08 1952 19.790 31.113 52.993 24.631 4.234 0.000 0.000 0.000 67.701 20.023 66.067 28.722 - 10.45 51.08 1953 31.004 49.484 0.482 0.000 0.000 5.072 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1954 11.289 0.273 9.044 22.255 0.000 0.000 0.000 0.000 5.832 13.364 10.207 34.027 - 10.45 51.08 1955 30.753 29.145 38.352 15.965 0.000 0.000 3.745 14.736 0.821 3.730 10.644 36.762 - 10.45 51.08 1956 19.743 0.000 50.976 31.895 0.000 25.096 93.677 11.211 1.455 11.749 20.082 12.058 - 10.45 51.08 1957 23.888 28.109 15.717 4.426 0.000 0.000 0.000 0.000 0.000 3.965 22.705 21.575 - 10.45 51.08 1958 37.460 20.585 71.873 18.110 8.840 27.087 22.545 0.000 0.000 8.472 20.273 29.861 - 10.45 51.08 1959 18.721 4.506 4.489 1.516 0.386 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1960 3.963 3.299 16.524 6.568 17.725 0.000 0.000 0.000 0.000 55.278 24.413 32.805 - 10.45 51.08 1961 45.870 33.962 11.336 44.347 43.679 44.411 0.000 0.000 0.000 0.000 0.000 9.596 - 10.45 51.08 1962 15.286 21.358 21.987 12.987 8.082 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1963 0.000 0.000 23.640 8.636 1.943 0.000 1.351 2.209 0.079 12.188 25.491 3.227 - 10.45 51.08 1964 6.771 22.759 10.893 21.686 36.581 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1965 0.000 0.000 34.707 16.124 6.164 13.084 0.000 0.000 0.000 0.000 7.244 62.505 - 10.45 51.08 1966 16.859 33.147 15.058 23.725 0.000 0.000 23.825 21.896 2.539 39.873 31.026 43.775 - 10.45 51.08 1967 19.135 15.615 25.556 9.530 0.870 7.744 0.000 0.000 0.028 7.809 11.665 19.800 - 10.45 51.08 1968 28.573 22.239 23.805 4.593 7.392 0.000 0.000 0.000 0.000 17.383 14.880 6.003 - 10.45 51.08 1969 19.927 10.966 17.873 66.534 37.282 19.540 0.000 0.000 2.602 0.000 0.000 0.000 - 10.45 51.08 1970 0.000 65.475 26.249 31.025 20.588 1.380 0.000 11.600 0.000 12.253 21.745 14.565 - 10.45 51.08 1971 17.875 16.649 8.619 6.380 0.000 3.214 0.198 0.000 0.000 0.000 13.384 0.000 - 10.45 51.08 1972 0.000 0.000 3.195 13.620 7.006 9.393 25.375 42.969 0.000 2.983 16.835 1.899 - 10.45 51.08 1973 11.682 15.140 18.096 13.918 6.545 0.000 0.000 0.000 0.000 9.605 0.026 24.769 - 10.45 51.08 1974 13.837 17.507 13.971 0.000 2.440 6.478 13.219 0.000 0.000 43.554 14.209 51.916 - 10.45 51.08 1975 7.881 12.104 15.378 21.175 1.682 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1976 43.623 10.505 8.188 2.190 0.017 5.820 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1977 0.000 9.773 24.973 12.874 0.707 7.999 0.696 61.038 6.484 6.709 59.651 30.653 - 10.45 51.08 1978 11.717 8.192 18.542 4.967 8.715 0.000 0.000 0.000 0.394 12.707 1.265 20.839 - 10.45 51.08 1979 2.073 3.456 109.414 19.962 4.060 0.000 0.000 0.000 0.000 0.000 12.105 33.245 - 10.45 51.08 1980 16.691 19.575 13.277 20.324 1.541 0.000 4.843 0.000 0.000 0.000 5.030 22.843 - 10.45 51.08 1981 14.965 19.699 30.892 4.565 13.606 2.019 0.444 35.412 3.763 24.724 34.692 33.228 - 10.45 51.08 1982 39.778 1.545 13.146 5.165 3.212 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1983 0.000 0.000 11.595 77.247 24.940 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1984 0.718 23.048 9.132 28.614 50.319 10.395 0.000 4.504 11.991 23.131 27.614 7.016 - 10.45 51.08 1985 17.305 7.993 13.075 5.946 2.728 0.000 0.000 0.000 0.000 0.000 0.000 0.005 - 10.45 51.08 1986 25.928 1.799 38.449 39.740 7.108 13.155 0.000 0.000 0.000 15.317 0.000 23.221 - 10.45 51.08 1987 32.991 26.044 69.747 7.420 2.915 50.736 0.831 15.677 30.871 7.413 29.263 20.201 - 10.45 51.08 1988 17.919 21.216 55.582 16.505 0.000 0.000 0.000 0.000 0.000 0.000 0.000 28.955 - 10.45 51.08 1989 13.816 11.450 21.672 10.756 0.000 0.000 0.000 0.000 0.000 0.000 7.234 19.914 - 10.45 51.08 1990 9.401 15.520 15.722 14.484 0.000 4.439 0.000 0.000 0.000 0.000 0.000 17.708 - 10.45 51.08 1991 16.308 7.399 8.362 1.492 1.674 0.000 0.000 13.704 0.000 0.000 0.000 0.000 - 10.45 51.08 1992 0.000 3.616 52.088 8.735 2.403 0.000 30.477 0.000 0.000 0.000 25.535 34.524 - 10.45 51.08 1993 19.186 16.760 11.770 3.649 0.000 2.336 22.107 2.037 3.793 12.910 13.567 65.735 - 10.45 51.08 1994 27.569 15.901 28.934 70.607 3.649 2.224 0.000 0.000 0.000 2.589 22.518 20.070 - 10.45 51.08 1995 33.014 31.370 11.458 13.720 2.021 35.489 11.408 0.000 14.434 3.464 13.595 10.047 - 10.45 51.08 1996 1.698 16.113 12.635 4.708 19.389 0.104 11.658 13.536 12.365 17.368 30.927 38.111 - 10.45 51.08 1997 8.941 32.354 29.279 12.243 1.286 0.000 35.335 0.000 0.000 0.000 2.551 26.519 - 10.45 51.08 1998 13.103 7.944 21.647 11.280 1.149 0.000 0.000 0.000 2.019 72.078 49.141 6.294 - 10.45 51.08 1999 16.766 16.200 18.617 10.502 0.000 0.000 15.769 0.000 0.000 0.000 7.226 30.903 - 10.45 51.08 2000 23.908 39.885 42.615 5.420 0.000 0.000 0.000 0.000 0.000 0.000 5.399 8.084 - 10.45 51.08 2001 11.595 9.893 61.844 18.542 2.294 0.000 6.312 0.000 0.000 2.763 40.708 21.247 - 10.45 51.08 2002 10.126 28.771 29.982 10.853 13.743 29.328 16.570 7.265 2.276 30.952 77.409 86.195 - 10.45 51.08 2003 25.543 9.143 11.210 2.117 0.963 2.292 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 2004 14.558 13.173 10.226 6.000 77.692 0.000 0.727 0.000 0.000 0.000 1.599 8.317 - 10.45 51.08 2005 8.286 26.377 24.356 7.449 2.674 0.000 0.000 0.000 0.000 0.000 4.876 15.259 - 10.45 51.08 2006 10.680 10.332 25.146 18.735 0.534 5.156 14.170 1.003 0.000 0.000 4.268 9.883 - 10.45 51.08 2007 24.833 18.484 24.507 1.176 1.020 6.946 19.656 73.978 63.845 2.496 34.383 23.300 - 10.45 51.08 2008 16.706 9.328 28.271 30.506 1.413 0.000 0.000 0.000 0.000 0.000 0.000 20.220 - 10.45 51.08 2009 5.192 20.176 27.196 1.827 13.665 2.490 0.666 0.000 0.000 5.888 43.669 68.572 - 10.45 51.08 2010 12.421 46.499 12.346 2.396 31.614 4.583 18.642 38.574 21.850 5.004 62.697 9.438 - 10.45 51.08 2011 97.633 7.874 4.131 0.808 0.000 0.000 0.000 0.000 0.000 0.000 0.000 4.289 - 10.45 51.08 2012 38.669 7.412 3.848 0.904 0.000 0.000 22.038 0.000 0.000 0.000 6.424 35.124 diff --git a/rLPJGUESS/inst/extdata/outputsForTests/run_estinterval/outDirectory/mwcont_lower.out b/rLPJGUESS/inst/extdata/outputsForTests/run_estinterval/outDirectory/mwcont_lower.out deleted file mode 100644 index 44cb3ef..0000000 --- a/rLPJGUESS/inst/extdata/outputsForTests/run_estinterval/outDirectory/mwcont_lower.out +++ /dev/null @@ -1,63 +0,0 @@ - Lon Lat Year Jan Feb Mar Apr May Jun Jul Aug Sep Oct Nov Dec - 10.45 51.08 1951 0.749 0.877 0.968 0.993 0.960 0.957 0.948 0.950 0.943 0.926 0.986 1.000 - 10.45 51.08 1952 1.000 1.000 0.997 0.973 0.977 0.944 0.802 0.628 0.678 0.912 0.999 0.999 - 10.45 51.08 1953 1.000 0.999 0.996 0.968 0.874 0.801 0.798 0.762 0.679 0.643 0.672 0.703 - 10.45 51.08 1954 0.830 0.923 1.000 0.997 0.956 0.847 0.847 0.932 0.974 0.994 0.999 1.000 - 10.45 51.08 1955 1.000 0.997 0.997 0.996 0.974 0.925 0.909 0.970 0.972 0.985 0.999 1.000 - 10.45 51.08 1956 1.000 1.000 0.999 0.997 0.975 0.971 0.988 0.990 0.990 0.995 1.000 1.000 - 10.45 51.08 1957 1.000 1.000 0.998 0.990 0.956 0.879 0.813 0.832 0.883 0.987 0.999 1.000 - 10.45 51.08 1958 1.000 1.000 0.996 0.997 0.992 0.958 0.949 0.901 0.896 0.956 0.999 1.000 - 10.45 51.08 1959 1.000 1.000 0.998 0.991 0.961 0.905 0.780 0.660 0.570 0.493 0.577 0.659 - 10.45 51.08 1960 0.812 0.971 1.000 0.996 0.984 0.932 0.828 0.783 0.811 0.913 1.000 1.000 - 10.45 51.08 1961 1.000 1.000 0.998 0.996 0.993 0.977 0.872 0.831 0.786 0.742 0.761 0.884 - 10.45 51.08 1962 0.994 1.000 0.997 0.996 0.995 0.933 0.846 0.764 0.712 0.690 0.693 0.751 - 10.45 51.08 1963 0.792 0.800 0.925 0.997 0.982 0.941 0.951 0.937 0.966 0.998 0.999 1.000 - 10.45 51.08 1964 1.000 1.000 1.000 0.997 0.981 0.905 0.776 0.688 0.629 0.621 0.673 0.737 - 10.45 51.08 1965 0.838 0.937 0.984 0.998 0.990 0.973 0.945 0.938 0.926 0.932 0.964 1.000 - 10.45 51.08 1966 1.000 0.997 0.999 0.998 0.960 0.892 0.965 0.972 0.989 0.978 0.999 1.000 - 10.45 51.08 1967 1.000 1.000 0.999 0.997 0.968 0.976 0.938 0.867 0.930 0.996 0.999 1.000 - 10.45 51.08 1968 1.000 0.999 0.999 0.991 0.991 0.959 0.883 0.823 0.860 0.987 0.998 1.000 - 10.45 51.08 1969 1.000 1.000 1.000 0.998 0.986 0.967 0.901 0.783 0.805 0.810 0.865 0.910 - 10.45 51.08 1970 0.930 0.999 1.000 0.999 0.996 0.951 0.876 0.902 0.949 0.984 1.000 1.000 - 10.45 51.08 1971 1.000 1.000 1.000 0.995 0.968 0.973 0.922 0.771 0.685 0.664 0.707 0.817 - 10.45 51.08 1972 0.855 0.894 0.943 0.996 0.989 0.985 0.979 0.989 0.980 0.988 0.999 1.000 - 10.45 51.08 1973 1.000 1.000 1.000 0.999 0.986 0.927 0.837 0.790 0.725 0.808 0.947 0.996 - 10.45 51.08 1974 1.000 1.000 0.998 0.973 0.985 0.992 0.994 0.951 0.948 0.977 1.000 1.000 - 10.45 51.08 1975 1.000 1.000 1.000 0.997 0.981 0.946 0.941 0.833 0.783 0.809 0.867 0.957 - 10.45 51.08 1976 0.998 1.000 1.000 0.996 0.967 0.938 0.788 0.685 0.609 0.612 0.669 0.761 - 10.45 51.08 1977 0.848 0.981 0.999 0.998 0.986 0.950 0.969 0.993 0.995 0.996 0.999 1.000 - 10.45 51.08 1978 1.000 1.000 1.000 0.995 0.990 0.932 0.906 0.889 0.929 0.995 0.997 1.000 - 10.45 51.08 1979 1.000 1.000 0.999 0.997 0.992 0.962 0.944 0.962 0.930 0.936 0.989 1.000 - 10.45 51.08 1980 1.000 1.000 1.000 0.999 0.977 0.936 0.985 0.925 0.881 0.898 0.967 1.000 - 10.45 51.08 1981 1.000 0.999 0.999 0.989 0.987 0.989 0.971 0.964 0.973 0.996 1.000 0.999 - 10.45 51.08 1982 1.000 0.999 1.000 0.995 0.983 0.896 0.825 0.743 0.665 0.656 0.694 0.764 - 10.45 51.08 1983 0.851 0.949 0.991 0.996 0.995 0.973 0.880 0.795 0.758 0.764 0.767 0.819 - 10.45 51.08 1984 0.921 1.000 1.000 0.995 0.995 0.983 0.974 0.982 0.986 0.998 0.996 1.000 - 10.45 51.08 1985 1.000 1.000 1.000 0.995 0.975 0.941 0.940 0.890 0.869 0.841 0.846 0.915 - 10.45 51.08 1986 1.000 1.000 1.000 0.996 0.991 0.985 0.898 0.835 0.875 0.908 0.978 0.999 - 10.45 51.08 1987 0.999 0.999 0.999 0.996 0.990 0.993 0.962 0.995 0.992 0.996 1.000 1.000 - 10.45 51.08 1988 1.000 1.000 0.999 0.995 0.957 0.878 0.885 0.856 0.795 0.779 0.801 0.957 - 10.45 51.08 1989 1.000 1.000 0.999 0.997 0.961 0.896 0.824 0.760 0.695 0.717 0.819 0.942 - 10.45 51.08 1990 1.000 1.000 0.996 0.997 0.944 0.888 0.891 0.774 0.758 0.783 0.872 0.996 - 10.45 51.08 1991 1.000 1.000 0.999 0.990 0.990 0.945 0.883 0.829 0.764 0.729 0.754 0.805 - 10.45 51.08 1992 0.920 0.977 0.999 0.997 0.969 0.881 0.860 0.790 0.787 0.824 0.956 1.000 - 10.45 51.08 1993 1.000 0.999 0.998 0.992 0.919 0.938 0.943 0.976 0.983 0.998 1.000 1.000 - 10.45 51.08 1994 1.000 1.000 0.999 0.994 0.967 0.978 0.918 0.850 0.944 0.990 0.999 1.000 - 10.45 51.08 1995 1.000 1.000 1.000 0.998 0.983 0.993 0.951 0.891 0.928 0.988 1.000 1.000 - 10.45 51.08 1996 1.000 1.000 1.000 0.997 0.995 0.963 0.970 0.971 0.997 0.998 0.999 1.000 - 10.45 51.08 1997 0.999 0.999 0.999 0.998 0.987 0.918 0.885 0.909 0.873 0.893 0.979 1.000 - 10.45 51.08 1998 1.000 1.000 0.999 0.996 0.957 0.919 0.923 0.890 0.935 0.999 1.000 1.000 - 10.45 51.08 1999 1.000 1.000 1.000 0.996 0.960 0.964 0.978 0.932 0.892 0.887 0.951 1.000 - 10.45 51.08 2000 1.000 1.000 0.999 0.992 0.935 0.844 0.806 0.776 0.809 0.906 0.983 1.000 - 10.45 51.08 2001 1.000 1.000 0.998 0.997 0.975 0.948 0.969 0.905 0.902 0.990 1.000 1.000 - 10.45 51.08 2002 1.000 1.000 0.998 0.991 0.994 0.982 0.962 0.985 0.978 0.999 1.000 1.000 - 10.45 51.08 2003 1.000 1.000 0.999 0.994 0.980 0.979 0.916 0.781 0.699 0.742 0.794 0.906 - 10.45 51.08 2004 0.992 0.999 0.999 0.993 0.988 0.954 0.968 0.924 0.868 0.862 0.913 0.994 - 10.45 51.08 2005 0.999 1.000 0.999 0.996 0.989 0.927 0.841 0.879 0.891 0.932 0.988 1.000 - 10.45 51.08 2006 1.000 1.000 1.000 0.997 0.963 0.961 0.847 0.808 0.878 0.886 0.972 1.000 - 10.45 51.08 2007 1.000 1.000 0.999 0.978 0.911 0.901 0.955 0.983 0.991 0.994 1.000 1.000 - 10.45 51.08 2008 1.000 1.000 0.999 0.997 0.960 0.873 0.830 0.761 0.712 0.766 0.883 0.994 - 10.45 51.08 2009 1.000 1.000 1.000 0.992 0.992 0.981 0.972 0.924 0.869 0.955 0.998 1.000 - 10.45 51.08 2010 1.000 1.000 0.998 0.990 0.987 0.953 0.833 0.930 0.996 0.993 0.998 1.000 - 10.45 51.08 2011 1.000 1.000 0.998 0.978 0.905 0.793 0.806 0.816 0.846 0.858 0.877 0.958 - 10.45 51.08 2012 1.000 1.000 0.997 0.992 0.959 0.937 0.991 0.941 0.902 0.900 0.958 0.999 diff --git a/rLPJGUESS/inst/extdata/outputsForTests/run_estinterval/outDirectory/mwcont_upper.out b/rLPJGUESS/inst/extdata/outputsForTests/run_estinterval/outDirectory/mwcont_upper.out deleted file mode 100644 index 9c310c4..0000000 --- a/rLPJGUESS/inst/extdata/outputsForTests/run_estinterval/outDirectory/mwcont_upper.out +++ /dev/null @@ -1,63 +0,0 @@ - Lon Lat Year Jan Feb Mar Apr May Jun Jul Aug Sep Oct Nov Dec - 10.45 51.08 1951 0.836 0.856 0.818 0.536 0.352 0.760 0.548 0.672 0.540 0.501 0.843 0.904 - 10.45 51.08 1952 0.910 0.926 0.909 0.740 0.704 0.469 0.166 0.142 0.765 0.927 0.923 0.938 - 10.45 51.08 1953 0.919 0.944 0.714 0.406 0.293 0.489 0.620 0.446 0.266 0.346 0.597 0.594 - 10.45 51.08 1954 0.795 0.873 0.742 0.664 0.413 0.315 0.635 0.681 0.599 0.748 0.744 0.817 - 10.45 51.08 1955 0.941 0.928 0.918 0.726 0.458 0.443 0.652 0.809 0.628 0.584 0.812 0.867 - 10.45 51.08 1956 0.907 0.864 0.826 0.721 0.561 0.743 0.815 0.662 0.532 0.609 0.795 0.804 - 10.45 51.08 1957 0.895 0.836 0.728 0.545 0.445 0.454 0.601 0.630 0.573 0.855 0.888 0.894 - 10.45 51.08 1958 0.924 0.838 0.892 0.747 0.629 0.689 0.640 0.550 0.482 0.735 0.920 0.893 - 10.45 51.08 1959 0.909 0.803 0.621 0.535 0.465 0.506 0.122 0.411 0.252 0.106 0.769 0.810 - 10.45 51.08 1960 0.878 0.887 0.763 0.529 0.631 0.465 0.284 0.502 0.699 0.891 0.881 0.901 - 10.45 51.08 1961 0.939 0.874 0.640 0.769 0.829 0.744 0.318 0.430 0.342 0.233 0.483 0.819 - 10.45 51.08 1962 0.896 0.894 0.910 0.687 0.557 0.308 0.402 0.326 0.413 0.321 0.331 0.582 - 10.45 51.08 1963 0.680 0.685 0.848 0.712 0.482 0.477 0.546 0.685 0.519 0.685 0.786 0.891 - 10.45 51.08 1964 0.876 0.865 0.744 0.695 0.677 0.420 0.335 0.429 0.366 0.480 0.632 0.712 - 10.45 51.08 1965 0.843 0.890 0.898 0.639 0.618 0.629 0.527 0.525 0.530 0.444 0.640 0.912 - 10.45 51.08 1966 0.903 0.930 0.747 0.687 0.482 0.502 0.825 0.644 0.649 0.556 0.913 0.916 - 10.45 51.08 1967 0.918 0.808 0.735 0.622 0.430 0.698 0.489 0.488 0.729 0.700 0.724 0.798 - 10.45 51.08 1968 0.920 0.882 0.838 0.557 0.620 0.464 0.347 0.414 0.620 0.832 0.823 0.783 - 10.45 51.08 1969 0.794 0.808 0.900 0.823 0.744 0.735 0.405 0.285 0.718 0.542 0.647 0.723 - 10.45 51.08 1970 0.753 0.937 0.897 0.813 0.679 0.412 0.392 0.750 0.566 0.684 0.902 0.879 - 10.45 51.08 1971 0.856 0.782 0.690 0.560 0.495 0.567 0.251 0.111 0.249 0.452 0.707 0.882 - 10.45 51.08 1972 0.814 0.809 0.779 0.626 0.632 0.672 0.600 0.838 0.594 0.488 0.732 0.853 - 10.45 51.08 1973 0.813 0.873 0.813 0.621 0.526 0.372 0.343 0.340 0.515 0.784 0.904 0.909 - 10.45 51.08 1974 0.877 0.828 0.803 0.487 0.547 0.591 0.693 0.511 0.470 0.675 0.881 0.919 - 10.45 51.08 1975 0.891 0.823 0.761 0.733 0.615 0.538 0.509 0.247 0.439 0.530 0.638 0.682 - 10.45 51.08 1976 0.894 0.855 0.677 0.521 0.387 0.568 0.150 0.219 0.184 0.504 0.624 0.731 - 10.45 51.08 1977 0.726 0.760 0.795 0.681 0.482 0.553 0.677 0.800 0.712 0.695 0.902 0.916 - 10.45 51.08 1978 0.865 0.811 0.726 0.548 0.579 0.356 0.483 0.536 0.609 0.800 0.690 0.766 - 10.45 51.08 1979 0.843 0.869 0.909 0.801 0.584 0.440 0.611 0.459 0.452 0.471 0.791 0.915 - 10.45 51.08 1980 0.876 0.821 0.663 0.640 0.526 0.451 0.544 0.294 0.384 0.626 0.753 0.886 - 10.45 51.08 1981 0.923 0.905 0.836 0.596 0.751 0.644 0.391 0.645 0.505 0.890 0.880 0.943 - 10.45 51.08 1982 0.919 0.866 0.669 0.486 0.492 0.285 0.323 0.314 0.110 0.437 0.524 0.580 - 10.45 51.08 1983 0.619 0.664 0.652 0.847 0.697 0.529 0.268 0.433 0.457 0.453 0.396 0.532 - 10.45 51.08 1984 0.650 0.850 0.747 0.787 0.743 0.700 0.565 0.642 0.732 0.813 0.817 0.911 - 10.45 51.08 1985 0.917 0.878 0.751 0.600 0.392 0.499 0.427 0.449 0.453 0.288 0.321 0.668 - 10.45 51.08 1986 0.901 0.863 0.845 0.870 0.652 0.651 0.332 0.440 0.649 0.697 0.839 0.764 - 10.45 51.08 1987 0.941 0.924 0.946 0.672 0.600 0.848 0.567 0.708 0.666 0.749 0.765 0.914 - 10.45 51.08 1988 0.892 0.857 0.885 0.709 0.379 0.338 0.608 0.356 0.309 0.319 0.442 0.856 - 10.45 51.08 1989 0.878 0.755 0.747 0.571 0.471 0.446 0.299 0.302 0.320 0.532 0.883 0.921 - 10.45 51.08 1990 0.885 0.797 0.772 0.601 0.376 0.577 0.470 0.177 0.508 0.479 0.627 0.828 - 10.45 51.08 1991 0.824 0.765 0.672 0.468 0.455 0.385 0.276 0.582 0.273 0.303 0.416 0.564 - 10.45 51.08 1992 0.812 0.772 0.764 0.685 0.412 0.416 0.612 0.370 0.567 0.545 0.773 0.932 - 10.45 51.08 1993 0.924 0.923 0.796 0.544 0.351 0.701 0.666 0.519 0.589 0.670 0.827 0.901 - 10.45 51.08 1994 0.917 0.871 0.844 0.748 0.607 0.577 0.573 0.508 0.708 0.664 0.760 0.916 - 10.45 51.08 1995 0.905 0.887 0.713 0.627 0.583 0.765 0.588 0.478 0.729 0.760 0.703 0.736 - 10.45 51.08 1996 0.816 0.821 0.723 0.581 0.721 0.550 0.655 0.665 0.717 0.711 0.886 0.912 - 10.45 51.08 1997 0.917 0.892 0.829 0.663 0.510 0.287 0.549 0.520 0.435 0.553 0.723 0.866 - 10.45 51.08 1998 0.878 0.771 0.739 0.572 0.537 0.485 0.520 0.348 0.726 0.894 0.930 0.884 - 10.45 51.08 1999 0.837 0.805 0.762 0.634 0.439 0.632 0.681 0.470 0.379 0.406 0.788 0.909 - 10.45 51.08 2000 0.900 0.907 0.868 0.660 0.419 0.317 0.452 0.460 0.690 0.739 0.692 0.684 - 10.45 51.08 2001 0.677 0.736 0.795 0.775 0.569 0.514 0.678 0.282 0.490 0.590 0.792 0.926 - 10.45 51.08 2002 0.892 0.838 0.860 0.669 0.709 0.663 0.627 0.676 0.584 0.793 0.919 0.924 - 10.45 51.08 2003 0.926 0.896 0.774 0.491 0.468 0.602 0.325 0.093 0.426 0.616 0.689 0.885 - 10.45 51.08 2004 0.889 0.875 0.703 0.560 0.775 0.452 0.568 0.306 0.318 0.421 0.652 0.897 - 10.45 51.08 2005 0.897 0.910 0.853 0.621 0.526 0.301 0.410 0.664 0.615 0.699 0.687 0.782 - 10.45 51.08 2006 0.777 0.726 0.795 0.686 0.530 0.606 0.511 0.618 0.606 0.642 0.718 0.704 - 10.45 51.08 2007 0.796 0.798 0.718 0.523 0.425 0.701 0.663 0.763 0.628 0.789 0.823 0.891 - 10.45 51.08 2008 0.845 0.753 0.744 0.778 0.474 0.379 0.466 0.246 0.373 0.638 0.859 0.913 - 10.45 51.08 2009 0.854 0.801 0.803 0.604 0.688 0.562 0.543 0.379 0.475 0.722 0.913 0.938 - 10.45 51.08 2010 0.949 0.949 0.803 0.543 0.703 0.454 0.456 0.821 0.675 0.852 0.908 0.941 - 10.45 51.08 2011 0.940 0.837 0.689 0.487 0.229 0.220 0.612 0.536 0.604 0.590 0.579 0.690 - 10.45 51.08 2012 0.891 0.854 0.642 0.451 0.424 0.625 0.674 0.479 0.413 0.499 0.621 0.926 diff --git a/rLPJGUESS/inst/extdata/outputsForTests/run_estinterval/outDirectory/nflux.out b/rLPJGUESS/inst/extdata/outputsForTests/run_estinterval/outDirectory/nflux.out deleted file mode 100644 index 9fff317..0000000 --- a/rLPJGUESS/inst/extdata/outputsForTests/run_estinterval/outDirectory/nflux.out +++ /dev/null @@ -1,63 +0,0 @@ - Lon Lat Year dep fix fert flux leach NEE - 10.45 51.08 1951 -11.23 -2.24 -0.00 1.24 0.24 -11.99 - 10.45 51.08 1952 -11.23 -2.04 -0.00 2.76 0.83 -9.68 - 10.45 51.08 1953 -11.23 -2.20 -0.00 1.74 0.26 -11.42 - 10.45 51.08 1954 -11.23 -2.60 -0.00 1.23 0.44 -12.15 - 10.45 51.08 1955 -11.23 -2.39 -0.00 1.13 0.63 -11.86 - 10.45 51.08 1956 -11.23 -2.51 -0.00 1.09 0.63 -12.02 - 10.45 51.08 1957 -11.23 -2.60 -0.00 1.28 0.55 -12.00 - 10.45 51.08 1958 -11.23 -2.29 -0.00 1.24 0.77 -11.51 - 10.45 51.08 1959 -11.23 -2.41 -0.00 2.95 0.14 -10.55 - 10.45 51.08 1960 -14.10 -2.69 -0.00 1.17 0.41 -15.21 - 10.45 51.08 1961 -14.10 -2.59 -0.00 1.50 0.57 -14.61 - 10.45 51.08 1962 -14.10 -2.70 -0.00 1.58 0.37 -14.85 - 10.45 51.08 1963 -14.10 -2.32 -0.00 1.14 0.34 -14.94 - 10.45 51.08 1964 -14.10 -2.09 -0.00 1.38 0.34 -14.46 - 10.45 51.08 1965 -14.10 -2.68 -0.00 1.01 0.52 -15.26 - 10.45 51.08 1966 -14.10 -2.51 -0.00 1.08 0.75 -14.78 - 10.45 51.08 1967 -14.10 -2.53 -0.00 1.19 0.58 -14.86 - 10.45 51.08 1968 -14.10 -2.51 -0.00 1.15 0.46 -15.00 - 10.45 51.08 1969 -14.10 -2.41 -0.00 1.69 0.58 -14.24 - 10.45 51.08 1970 -16.97 -2.34 -0.00 1.07 0.77 -17.46 - 10.45 51.08 1971 -16.97 -2.39 -0.00 2.37 0.27 -16.72 - 10.45 51.08 1972 -16.97 -2.69 -0.00 0.90 0.27 -18.49 - 10.45 51.08 1973 -16.97 -2.07 -0.00 1.33 0.45 -17.26 - 10.45 51.08 1974 -16.97 -2.54 -0.00 0.97 0.70 -17.84 - 10.45 51.08 1975 -16.97 -2.11 -0.00 1.49 0.30 -17.29 - 10.45 51.08 1976 -16.97 -2.17 -0.00 2.21 0.31 -16.62 - 10.45 51.08 1977 -16.97 -2.50 -0.00 0.87 0.64 -17.97 - 10.45 51.08 1978 -16.97 -2.56 -0.00 0.95 0.41 -18.17 - 10.45 51.08 1979 -16.97 -2.13 -0.00 1.02 0.63 -17.45 - 10.45 51.08 1980 -17.99 -2.21 -0.00 1.00 0.51 -18.69 - 10.45 51.08 1981 -17.99 -2.31 -0.00 0.94 0.69 -18.67 - 10.45 51.08 1982 -17.99 -2.13 -0.00 2.41 0.25 -17.47 - 10.45 51.08 1983 -17.99 -1.86 -0.00 1.32 0.28 -18.26 - 10.45 51.08 1984 -17.99 -2.33 -0.00 0.79 0.67 -18.87 - 10.45 51.08 1985 -17.99 -2.21 -0.00 1.06 0.23 -18.91 - 10.45 51.08 1986 -17.99 -2.24 -0.00 0.99 0.57 -18.68 - 10.45 51.08 1987 -17.99 -2.36 -0.00 0.81 0.82 -18.71 - 10.45 51.08 1988 -17.99 -2.20 -0.00 1.32 0.56 -18.32 - 10.45 51.08 1989 -17.99 -2.32 -0.00 1.43 0.34 -18.54 - 10.45 51.08 1990 -19.66 -2.56 -0.00 1.61 0.35 -20.26 - 10.45 51.08 1991 -19.66 -2.57 -0.00 1.37 0.18 -20.68 - 10.45 51.08 1992 -19.66 -2.12 -0.00 1.11 0.40 -20.27 - 10.45 51.08 1993 -19.66 -2.28 -0.00 0.99 0.63 -20.32 - 10.45 51.08 1994 -19.66 -2.48 -0.00 1.03 0.67 -20.43 - 10.45 51.08 1995 -19.66 -2.51 -0.00 0.93 0.64 -20.60 - 10.45 51.08 1996 -19.66 -2.59 -0.00 0.81 0.62 -20.81 - 10.45 51.08 1997 -19.66 -2.60 -0.00 1.14 0.58 -20.54 - 10.45 51.08 1998 -19.66 -2.79 -0.00 0.99 0.71 -20.75 - 10.45 51.08 1999 -19.66 -2.58 -0.00 1.01 0.46 -20.75 - 10.45 51.08 2000 -21.34 -2.47 -0.00 1.05 0.58 -22.18 - 10.45 51.08 2001 -21.34 -2.67 -0.00 1.09 0.74 -22.18 - 10.45 51.08 2002 -21.34 -2.65 -0.00 0.91 0.98 -22.11 - 10.45 51.08 2003 -21.34 -2.34 -0.00 2.11 0.22 -21.36 - 10.45 51.08 2004 -21.34 -2.67 -0.00 1.02 0.31 -22.68 - 10.45 51.08 2005 -21.34 -2.65 -0.00 1.00 0.41 -22.58 - 10.45 51.08 2006 -21.34 -2.56 -0.00 1.01 0.39 -22.50 - 10.45 51.08 2007 -21.34 -2.56 -0.00 0.91 0.73 -22.26 - 10.45 51.08 2008 -21.34 -2.61 -0.00 1.25 0.46 -22.24 - 10.45 51.08 2009 -21.34 -2.64 -0.00 0.98 0.69 -22.32 - 10.45 51.08 2010 -20.03 -2.80 -0.00 1.14 0.62 -21.06 - 10.45 51.08 2011 -20.03 -2.67 -0.00 1.74 0.26 -20.70 - 10.45 51.08 2012 -20.03 -2.75 -0.00 1.01 0.40 -21.37 diff --git a/rLPJGUESS/inst/extdata/outputsForTests/run_estinterval/outDirectory/ngases.out b/rLPJGUESS/inst/extdata/outputsForTests/run_estinterval/outDirectory/ngases.out deleted file mode 100644 index 11d31a8..0000000 --- a/rLPJGUESS/inst/extdata/outputsForTests/run_estinterval/outDirectory/ngases.out +++ /dev/null @@ -1,63 +0,0 @@ - Lon Lat Year NH3 NO NO2 N2O N2 NSoil Total - 10.45 51.08 1951 0.057 0.073 0.018 0.008 0.085 0.996 1.238 - 10.45 51.08 1952 0.378 0.486 0.122 0.056 0.561 1.159 2.761 - 10.45 51.08 1953 0.141 0.181 0.045 0.021 0.209 1.147 1.744 - 10.45 51.08 1954 0.055 0.071 0.018 0.008 0.082 1.000 1.234 - 10.45 51.08 1955 0.055 0.071 0.018 0.008 0.082 0.900 1.135 - 10.45 51.08 1956 0.056 0.071 0.018 0.008 0.082 0.855 1.090 - 10.45 51.08 1957 0.054 0.069 0.017 0.008 0.080 1.049 1.278 - 10.45 51.08 1958 0.054 0.069 0.017 0.008 0.079 1.013 1.240 - 10.45 51.08 1959 0.422 0.542 0.136 0.063 0.626 1.159 2.949 - 10.45 51.08 1960 0.052 0.066 0.017 0.008 0.076 0.947 1.165 - 10.45 51.08 1961 0.114 0.146 0.037 0.017 0.169 1.018 1.501 - 10.45 51.08 1962 0.144 0.185 0.046 0.021 0.213 0.966 1.575 - 10.45 51.08 1963 0.051 0.065 0.016 0.008 0.075 0.924 1.139 - 10.45 51.08 1964 0.071 0.092 0.023 0.011 0.106 1.081 1.384 - 10.45 51.08 1965 0.049 0.063 0.016 0.007 0.073 0.798 1.008 - 10.45 51.08 1966 0.049 0.063 0.016 0.007 0.073 0.871 1.079 - 10.45 51.08 1967 0.048 0.062 0.015 0.007 0.071 0.987 1.190 - 10.45 51.08 1968 0.047 0.061 0.015 0.007 0.070 0.949 1.150 - 10.45 51.08 1969 0.178 0.229 0.057 0.026 0.264 0.938 1.694 - 10.45 51.08 1970 0.047 0.060 0.015 0.007 0.069 0.870 1.067 - 10.45 51.08 1971 0.315 0.404 0.101 0.047 0.467 1.040 2.374 - 10.45 51.08 1972 0.046 0.059 0.015 0.007 0.068 0.709 0.905 - 10.45 51.08 1973 0.070 0.089 0.022 0.010 0.103 1.030 1.325 - 10.45 51.08 1974 0.044 0.057 0.014 0.007 0.066 0.785 0.972 - 10.45 51.08 1975 0.117 0.150 0.038 0.017 0.173 0.999 1.494 - 10.45 51.08 1976 0.281 0.361 0.090 0.042 0.416 1.015 2.205 - 10.45 51.08 1977 0.053 0.068 0.017 0.008 0.079 0.640 0.865 - 10.45 51.08 1978 0.052 0.067 0.017 0.008 0.077 0.732 0.952 - 10.45 51.08 1979 0.051 0.065 0.016 0.008 0.075 0.803 1.019 - 10.45 51.08 1980 0.052 0.067 0.017 0.008 0.077 0.781 1.001 - 10.45 51.08 1981 0.049 0.063 0.016 0.007 0.073 0.734 0.941 - 10.45 51.08 1982 0.321 0.412 0.103 0.048 0.476 1.052 2.413 - 10.45 51.08 1983 0.111 0.142 0.036 0.016 0.164 0.848 1.318 - 10.45 51.08 1984 0.046 0.059 0.015 0.007 0.068 0.598 0.792 - 10.45 51.08 1985 0.054 0.070 0.018 0.008 0.081 0.830 1.061 - 10.45 51.08 1986 0.044 0.056 0.014 0.006 0.065 0.802 0.988 - 10.45 51.08 1987 0.044 0.057 0.014 0.007 0.066 0.624 0.811 - 10.45 51.08 1988 0.090 0.116 0.029 0.013 0.134 0.938 1.320 - 10.45 51.08 1989 0.120 0.154 0.039 0.018 0.178 0.923 1.432 - 10.45 51.08 1990 0.180 0.231 0.058 0.027 0.266 0.853 1.615 - 10.45 51.08 1991 0.112 0.143 0.036 0.017 0.165 0.894 1.366 - 10.45 51.08 1992 0.057 0.073 0.018 0.008 0.085 0.865 1.107 - 10.45 51.08 1993 0.061 0.078 0.020 0.009 0.090 0.731 0.989 - 10.45 51.08 1994 0.038 0.049 0.012 0.006 0.057 0.869 1.032 - 10.45 51.08 1995 0.038 0.049 0.012 0.006 0.057 0.765 0.928 - 10.45 51.08 1996 0.039 0.050 0.013 0.006 0.058 0.642 0.808 - 10.45 51.08 1997 0.058 0.075 0.019 0.009 0.087 0.888 1.136 - 10.45 51.08 1998 0.038 0.048 0.012 0.006 0.056 0.826 0.986 - 10.45 51.08 1999 0.037 0.047 0.012 0.005 0.055 0.856 1.012 - 10.45 51.08 2000 0.036 0.046 0.012 0.005 0.054 0.895 1.049 - 10.45 51.08 2001 0.066 0.085 0.021 0.010 0.098 0.810 1.091 - 10.45 51.08 2002 0.051 0.066 0.017 0.008 0.076 0.695 0.913 - 10.45 51.08 2003 0.278 0.357 0.090 0.041 0.412 0.933 2.110 - 10.45 51.08 2004 0.062 0.079 0.020 0.009 0.092 0.759 1.021 - 10.45 51.08 2005 0.053 0.068 0.017 0.008 0.078 0.776 1.000 - 10.45 51.08 2006 0.046 0.059 0.015 0.007 0.069 0.813 1.009 - 10.45 51.08 2007 0.046 0.059 0.015 0.007 0.068 0.715 0.910 - 10.45 51.08 2008 0.081 0.104 0.026 0.012 0.121 0.903 1.248 - 10.45 51.08 2009 0.045 0.058 0.014 0.007 0.066 0.787 0.977 - 10.45 51.08 2010 0.102 0.131 0.033 0.015 0.151 0.711 1.144 - 10.45 51.08 2011 0.207 0.265 0.067 0.031 0.307 0.865 1.741 - 10.45 51.08 2012 0.043 0.056 0.014 0.006 0.064 0.823 1.007 diff --git a/rLPJGUESS/inst/extdata/outputsForTests/run_estinterval/outDirectory/nlitter.out b/rLPJGUESS/inst/extdata/outputsForTests/run_estinterval/outDirectory/nlitter.out deleted file mode 100644 index b0b73f8..0000000 --- a/rLPJGUESS/inst/extdata/outputsForTests/run_estinterval/outDirectory/nlitter.out +++ /dev/null @@ -1,63 +0,0 @@ - Lon Lat Year Abi_alb BES Bet_pen Bet_pub Car_bet Cor_ave Fag_syl Fra_exc Jun_oxy MRS Pic_abi Pic_sit Pin_syl Pin_hal Pop_tre Que_coc Que_ile Que_pub Que_rob Til_cor Ulm_gla C3_gr C4_gr Total - 10.45 51.08 1951 0.00 0.08 1.37 1.15 8.50 0.00 17.61 27.80 0.00 0.00 0.18 0.19 0.15 0.00 0.00 0.00 0.00 1.62 2.92 4.47 26.53 0.00 0.00 92.56 - 10.45 51.08 1952 0.00 0.08 1.45 1.15 8.50 0.00 17.89 29.96 0.00 0.00 0.18 0.18 0.15 0.00 0.00 0.00 0.00 1.59 2.79 4.42 23.46 0.00 0.00 91.81 - 10.45 51.08 1953 0.00 0.08 1.31 1.12 8.51 0.00 18.21 29.47 0.00 0.00 0.17 0.17 0.14 0.00 0.00 0.00 0.00 1.54 2.47 4.37 23.51 0.00 0.00 91.07 - 10.45 51.08 1954 0.00 0.13 1.10 1.13 8.59 0.00 18.68 26.64 0.00 0.00 0.17 0.16 0.14 0.00 0.00 0.00 0.00 1.54 2.63 4.38 23.50 0.00 0.00 88.79 - 10.45 51.08 1955 0.00 0.11 1.05 1.10 8.54 0.00 18.99 28.88 0.00 0.00 0.17 0.15 0.13 0.00 0.00 0.00 0.00 1.50 2.31 4.30 23.48 0.00 0.00 90.72 - 10.45 51.08 1956 0.00 0.04 0.98 1.07 8.39 0.00 19.10 25.57 0.00 0.00 0.16 0.14 0.12 0.00 0.00 0.00 0.00 1.44 2.23 4.19 22.82 0.00 0.00 86.27 - 10.45 51.08 1957 0.00 0.04 0.94 1.05 8.32 0.00 19.27 25.43 0.00 0.00 0.16 0.14 0.12 0.00 0.00 0.00 0.00 1.41 2.18 4.14 24.82 0.00 0.00 88.01 - 10.45 51.08 1958 0.00 0.04 0.89 1.04 8.46 0.00 19.52 25.49 0.00 0.00 0.15 0.13 0.11 0.00 0.00 0.00 0.00 1.37 2.12 4.11 21.78 0.00 0.00 85.20 - 10.45 51.08 1959 0.00 0.04 2.89 1.00 8.13 0.00 19.67 25.25 0.00 0.00 0.14 0.12 0.10 0.00 0.00 0.00 0.00 1.32 2.04 4.00 21.44 0.00 0.00 86.13 - 10.45 51.08 1960 0.00 0.10 0.37 1.01 8.28 0.00 20.19 25.89 0.00 0.00 0.14 0.11 0.10 0.00 0.00 0.00 0.00 1.32 4.39 4.02 21.77 0.00 0.00 87.69 - 10.45 51.08 1961 0.00 0.01 0.37 0.98 8.21 0.00 20.45 25.62 0.00 0.00 0.14 0.11 0.12 0.00 0.00 0.00 0.00 1.27 1.28 3.90 21.56 0.00 0.00 84.03 - 10.45 51.08 1962 0.00 0.02 0.35 6.08 8.17 0.00 20.34 25.47 0.00 0.00 0.13 0.10 0.08 0.00 0.00 0.00 0.00 1.24 3.73 3.98 21.36 0.00 0.00 91.06 - 10.45 51.08 1963 0.00 0.02 0.33 0.00 8.11 0.00 20.92 25.62 0.00 0.00 0.13 0.10 0.08 0.00 0.00 0.00 0.00 1.21 0.53 3.73 21.24 0.00 0.00 82.01 - 10.45 51.08 1964 0.00 0.09 0.31 0.00 8.07 0.00 21.30 25.40 0.00 0.00 0.13 0.09 0.08 0.00 0.00 0.00 0.00 1.17 0.64 3.60 21.09 0.00 0.00 81.96 - 10.45 51.08 1965 0.00 0.00 0.30 0.00 8.00 0.00 20.81 25.06 0.00 0.00 0.12 0.09 0.07 0.00 0.00 0.00 0.00 1.15 0.63 3.55 20.80 0.00 0.00 80.59 - 10.45 51.08 1966 0.00 0.00 0.29 0.00 8.01 0.00 21.65 25.28 0.00 0.00 0.13 0.09 0.07 0.00 0.00 0.00 0.00 1.12 0.62 3.48 20.86 0.00 0.00 81.61 - 10.45 51.08 1967 0.00 0.00 0.28 0.00 8.02 0.00 21.95 25.35 0.00 0.00 0.12 0.08 0.10 0.00 0.00 0.00 0.00 1.11 0.61 3.44 20.87 0.00 0.00 81.94 - 10.45 51.08 1968 0.00 0.00 0.26 0.00 7.91 0.00 22.15 25.08 0.00 0.00 0.12 0.08 0.06 0.00 0.00 0.00 0.00 1.07 0.59 3.33 20.55 0.00 0.00 81.22 - 10.45 51.08 1969 0.00 0.00 0.25 0.00 7.84 0.00 22.27 24.86 0.00 0.00 0.12 0.08 0.06 0.00 0.00 0.00 0.00 1.05 0.58 3.26 20.31 0.00 0.00 80.68 - 10.45 51.08 1970 0.00 0.00 0.24 0.00 7.75 0.00 22.39 24.62 0.00 0.00 0.12 0.07 0.06 0.00 0.00 0.00 0.00 1.01 0.56 3.16 22.65 0.00 0.00 82.61 - 10.45 51.08 1971 0.00 0.00 2.32 0.00 7.58 0.00 22.29 24.14 0.00 0.00 0.11 0.07 0.05 0.00 0.00 0.00 0.00 3.61 0.53 3.02 19.05 0.00 0.00 82.76 - 10.45 51.08 1972 0.00 0.00 0.00 0.00 7.73 0.00 22.02 24.08 0.00 0.00 0.11 0.07 0.06 0.00 0.00 0.00 0.00 0.45 0.52 2.95 19.11 0.00 0.00 77.10 - 10.45 51.08 1973 0.00 0.00 0.00 0.00 7.40 0.00 22.47 23.78 0.00 0.00 0.12 0.07 0.06 0.00 0.00 0.00 0.00 0.46 0.51 2.86 18.62 0.00 0.00 76.34 - 10.45 51.08 1974 0.00 0.00 0.00 0.00 7.26 0.00 22.53 23.42 0.00 0.00 0.12 0.07 0.06 0.00 0.00 0.00 0.00 0.45 0.49 2.77 18.31 0.00 0.00 75.47 - 10.45 51.08 1975 0.00 0.00 0.00 0.00 7.19 0.00 22.68 23.24 0.00 0.00 0.13 0.07 0.06 0.00 0.00 0.00 0.00 0.45 0.50 2.74 18.19 0.00 0.00 75.25 - 10.45 51.08 1976 0.00 0.00 0.00 0.00 7.03 0.00 22.65 88.56 0.00 0.00 0.13 0.07 0.06 0.00 0.00 0.00 0.00 0.43 0.48 2.65 17.80 0.00 0.00 139.87 - 10.45 51.08 1977 0.00 0.00 0.00 0.00 7.01 0.00 22.73 12.72 0.00 0.00 0.13 0.07 0.06 0.00 0.00 0.00 0.00 0.42 0.47 2.55 17.69 0.00 0.00 63.84 - 10.45 51.08 1978 0.00 0.00 0.00 0.00 7.00 0.00 22.28 15.51 0.00 0.00 0.14 0.07 0.06 0.00 0.00 0.00 0.00 0.43 0.48 2.56 17.65 0.00 0.00 66.18 - 10.45 51.08 1979 0.00 0.00 0.00 0.00 6.99 0.00 22.34 15.50 0.00 0.00 0.15 0.07 0.07 0.00 0.00 0.00 0.00 0.43 0.49 2.55 17.67 0.00 0.00 66.28 - 10.45 51.08 1980 0.00 0.00 0.00 0.00 6.90 0.00 22.31 15.24 0.00 0.00 0.16 0.08 0.07 0.00 0.00 0.00 0.00 0.44 0.50 2.54 17.44 0.00 0.00 65.69 - 10.45 51.08 1981 0.00 0.00 0.00 0.00 6.88 0.00 23.52 15.18 0.00 0.00 0.18 0.09 0.08 0.00 0.00 0.00 0.00 0.44 3.61 2.52 17.39 0.00 0.00 69.89 - 10.45 51.08 1982 0.00 0.00 0.00 0.00 6.92 0.00 23.78 15.22 0.00 0.00 0.18 0.09 0.08 0.00 0.00 0.00 0.00 0.46 0.07 2.56 17.50 0.00 0.00 66.84 - 10.45 51.08 1983 0.00 0.00 0.00 0.00 6.90 0.00 24.14 15.16 0.00 0.00 0.20 0.09 0.09 0.00 0.00 0.00 0.00 0.45 0.07 2.53 17.43 0.00 0.00 67.06 - 10.45 51.08 1984 0.00 0.00 0.00 0.00 6.94 0.00 23.86 15.18 0.00 0.00 0.20 0.09 0.09 0.00 0.00 0.00 0.00 0.46 0.07 2.51 17.48 0.00 0.00 66.88 - 10.45 51.08 1985 0.00 0.00 0.00 0.00 6.83 0.00 24.46 14.99 0.00 0.00 0.21 0.09 0.13 0.00 0.00 0.00 0.00 0.46 0.08 2.46 17.27 0.00 0.00 66.98 - 10.45 51.08 1986 0.00 0.00 0.00 0.00 6.91 0.00 24.43 15.14 0.00 0.00 0.22 0.10 0.08 0.00 0.00 0.00 0.00 0.47 0.08 2.48 17.47 0.00 0.00 67.38 - 10.45 51.08 1987 0.00 0.00 0.00 0.00 6.90 0.00 24.90 15.12 0.00 0.00 0.23 0.10 0.08 0.00 0.00 0.00 0.00 0.46 0.08 2.43 17.43 0.00 0.00 67.75 - 10.45 51.08 1988 0.00 0.00 0.00 0.00 6.88 0.00 25.36 15.05 0.00 0.00 0.24 0.10 0.09 0.00 0.00 0.00 0.00 0.46 0.09 2.42 17.37 0.00 0.00 68.06 - 10.45 51.08 1989 0.00 0.00 0.00 0.00 6.92 0.00 25.72 15.10 0.00 0.00 0.25 0.11 0.09 0.00 0.00 0.00 0.00 0.48 0.09 2.44 17.48 0.00 0.00 68.68 - 10.45 51.08 1990 0.00 0.00 0.00 0.00 7.07 0.00 26.36 15.39 0.00 0.00 0.27 0.11 0.10 0.00 0.00 0.00 0.00 0.50 0.10 2.49 17.86 0.00 0.00 70.25 - 10.45 51.08 1991 0.00 0.00 0.00 0.00 7.25 0.00 26.62 15.75 0.00 0.00 0.30 0.12 0.11 0.00 0.00 0.00 0.00 0.52 0.11 2.56 18.36 0.00 0.00 71.70 - 10.45 51.08 1992 0.00 0.00 0.00 0.00 7.26 0.00 26.80 15.75 0.00 0.00 0.30 0.12 0.11 0.00 0.00 0.00 0.00 0.53 0.12 2.54 18.38 0.00 0.00 71.90 - 10.45 51.08 1993 0.00 0.00 0.00 0.00 7.13 0.00 28.01 15.49 0.00 0.00 0.32 0.12 0.11 0.00 0.00 0.00 0.00 0.51 0.12 2.46 18.06 0.00 0.00 72.35 - 10.45 51.08 1994 0.00 0.00 0.00 0.00 7.17 0.00 27.99 15.56 0.00 0.00 0.41 0.12 0.11 0.00 0.00 0.00 0.00 0.52 0.12 2.46 18.17 0.00 0.00 72.64 - 10.45 51.08 1995 0.00 0.00 0.00 0.00 7.12 0.00 28.61 15.43 0.00 0.00 0.28 0.12 0.11 0.00 0.00 0.00 0.00 0.51 0.13 2.41 18.00 0.00 0.00 72.71 - 10.45 51.08 1996 0.00 0.00 0.00 0.00 7.03 0.00 28.15 15.27 0.00 0.00 0.28 0.12 0.11 0.00 0.00 0.00 0.00 0.50 0.12 5.29 17.77 0.00 0.00 74.65 - 10.45 51.08 1997 0.00 0.00 0.00 0.00 6.93 0.00 28.35 15.03 0.00 0.00 0.28 0.12 0.11 0.00 0.00 0.00 0.00 0.49 0.13 1.87 17.49 0.00 0.00 70.80 - 10.45 51.08 1998 0.00 0.00 0.00 0.00 6.92 0.00 28.66 14.99 0.00 0.00 0.29 0.12 0.11 0.00 0.00 0.00 0.00 0.50 0.13 1.85 17.47 0.00 0.00 71.05 - 10.45 51.08 1999 0.00 0.00 0.00 0.00 6.93 0.00 29.09 14.97 0.00 0.00 0.30 0.12 0.11 0.00 0.00 0.00 0.00 0.51 0.14 1.85 17.50 0.00 0.00 71.52 - 10.45 51.08 2000 0.00 0.00 0.00 0.00 6.97 0.00 29.54 15.04 0.00 0.00 0.31 0.12 0.12 0.00 0.00 0.00 0.00 0.52 0.14 1.85 17.62 0.00 0.00 72.22 - 10.45 51.08 2001 0.00 0.00 0.00 0.00 88.62 0.00 29.91 14.95 0.00 0.00 0.32 0.12 0.12 0.00 0.00 0.00 0.00 0.51 0.15 1.82 17.51 0.00 0.00 154.04 - 10.45 51.08 2002 0.00 0.00 0.00 0.00 1.22 0.00 29.92 14.93 0.00 0.00 0.32 0.12 0.12 0.00 0.00 0.00 0.00 0.52 0.15 1.80 17.50 0.00 0.00 66.60 - 10.45 51.08 2003 0.00 0.00 0.00 0.00 1.24 0.00 29.94 14.81 0.00 0.00 0.33 0.12 0.12 0.00 0.00 0.00 0.00 0.52 0.16 1.79 17.41 0.00 0.00 66.45 - 10.45 51.08 2004 0.00 0.00 0.00 0.00 1.26 0.00 30.76 14.93 0.00 0.00 0.35 0.13 0.13 0.00 0.00 0.00 0.00 0.53 0.17 1.78 17.57 0.00 0.00 67.61 - 10.45 51.08 2005 0.00 0.00 0.00 0.00 1.34 0.00 31.13 15.26 0.00 0.00 0.37 0.14 0.13 0.00 0.00 0.00 0.00 0.56 0.18 1.82 18.06 0.00 0.00 68.99 - 10.45 51.08 2006 0.00 0.00 0.00 0.00 1.84 0.00 32.38 15.52 0.00 0.00 0.38 0.14 0.14 0.00 0.00 0.00 0.00 0.57 0.20 1.84 18.38 0.00 0.00 71.39 - 10.45 51.08 2007 0.00 0.00 0.00 0.00 1.11 0.00 32.79 15.61 0.00 0.00 0.38 0.13 0.13 0.00 0.00 0.00 0.00 0.56 0.20 1.78 18.40 0.00 0.00 71.11 - 10.45 51.08 2008 0.00 0.00 0.00 0.00 1.23 0.00 32.27 15.88 0.00 0.00 0.41 0.15 0.14 0.00 0.00 0.00 0.00 0.58 0.21 1.78 23.10 0.00 0.00 75.74 - 10.45 51.08 2009 0.00 0.00 0.00 0.00 1.24 0.00 33.63 15.89 0.00 0.00 0.43 0.15 0.15 0.00 0.00 0.00 0.00 0.58 0.22 1.77 18.23 0.00 0.00 72.29 - 10.45 51.08 2010 0.00 0.00 0.00 0.00 1.27 0.00 33.24 15.87 0.00 0.00 0.45 0.15 0.15 0.00 0.00 0.00 0.00 0.60 0.23 1.78 23.30 0.00 0.00 77.04 - 10.45 51.08 2011 0.00 0.00 0.00 0.00 1.25 0.00 34.62 15.77 0.00 0.00 0.45 0.15 0.15 0.00 0.00 0.00 0.00 0.59 0.24 1.73 17.29 0.00 0.00 72.24 - 10.45 51.08 2012 0.00 0.00 0.00 0.00 1.31 0.00 34.28 16.03 0.00 0.00 0.47 0.16 0.16 0.00 0.00 0.00 0.00 0.61 0.25 1.78 17.61 0.00 0.00 72.64 diff --git a/rLPJGUESS/inst/extdata/outputsForTests/run_estinterval/outDirectory/nmass.out b/rLPJGUESS/inst/extdata/outputsForTests/run_estinterval/outDirectory/nmass.out deleted file mode 100644 index 3f2f6ca..0000000 --- a/rLPJGUESS/inst/extdata/outputsForTests/run_estinterval/outDirectory/nmass.out +++ /dev/null @@ -1,63 +0,0 @@ - Lon Lat Year Abi_alb BES Bet_pen Bet_pub Car_bet Cor_ave Fag_syl Fra_exc Jun_oxy MRS Pic_abi Pic_sit Pin_syl Pin_hal Pop_tre Que_coc Que_ile Que_pub Que_rob Til_cor Ulm_gla C3_gr C4_gr Total - 10.45 51.08 1951 0.00 0.29 5.19 5.08 39.85 0.00 81.82 136.42 0.00 0.00 0.51 0.58 0.41 0.00 0.00 0.00 0.00 5.61 9.36 19.05 110.90 0.00 0.00 415.07 - 10.45 51.08 1952 0.00 0.30 5.22 5.22 41.20 0.00 85.56 141.32 0.00 0.00 0.52 0.57 0.41 0.00 0.00 0.00 0.00 5.70 9.25 19.52 111.38 0.00 0.00 426.15 - 10.45 51.08 1953 0.00 0.29 4.99 5.28 42.47 0.00 88.93 143.04 0.00 0.00 0.50 0.54 0.39 0.00 0.00 0.00 0.00 5.71 9.02 19.89 114.49 0.00 0.00 435.54 - 10.45 51.08 1954 0.00 0.29 4.87 5.44 44.12 0.00 93.58 145.70 0.00 0.00 0.49 0.53 0.38 0.00 0.00 0.00 0.00 5.83 9.22 20.47 118.60 0.00 0.00 449.52 - 10.45 51.08 1955 0.00 0.23 4.86 5.51 45.16 0.00 96.89 149.64 0.00 0.00 0.49 0.52 0.38 0.00 0.00 0.00 0.00 5.85 9.01 20.79 121.30 0.00 0.00 460.65 - 10.45 51.08 1956 0.00 0.15 4.83 5.59 45.99 0.00 99.84 149.87 0.00 0.00 0.48 0.49 0.37 0.00 0.00 0.00 0.00 5.85 9.01 21.03 123.19 0.00 0.00 466.68 - 10.45 51.08 1957 0.00 0.16 4.83 5.67 47.04 0.00 103.25 153.68 0.00 0.00 0.47 0.48 0.36 0.00 0.00 0.00 0.00 5.88 9.06 21.40 125.87 0.00 0.00 478.16 - 10.45 51.08 1958 0.00 0.16 4.82 5.77 48.27 0.00 106.98 158.12 0.00 0.00 0.46 0.46 0.35 0.00 0.00 0.00 0.00 5.91 9.09 21.85 125.97 0.00 0.00 488.21 - 10.45 51.08 1959 0.00 0.16 4.80 5.82 49.08 0.00 110.46 161.90 0.00 0.00 0.45 0.44 0.34 0.00 0.00 0.00 0.00 5.91 9.10 22.08 128.51 0.00 0.00 499.05 - 10.45 51.08 1960 0.00 0.16 2.33 5.95 50.85 0.00 115.38 168.11 0.00 0.00 0.44 0.43 0.33 0.00 0.00 0.00 0.00 6.01 9.25 22.58 133.00 0.00 0.00 514.83 - 10.45 51.08 1961 0.00 0.08 2.34 6.01 51.93 0.00 118.92 171.95 0.00 0.00 0.44 0.42 0.33 0.00 0.00 0.00 0.00 6.01 6.24 22.79 135.70 0.00 0.00 523.15 - 10.45 51.08 1962 0.00 0.09 2.34 6.08 53.09 0.00 122.26 176.02 0.00 0.00 0.43 0.41 0.29 0.00 0.00 0.00 0.00 6.05 6.33 23.14 138.54 0.00 0.00 535.05 - 10.45 51.08 1963 0.00 0.09 2.34 0.00 54.20 0.00 126.80 180.24 0.00 0.00 0.43 0.40 0.29 0.00 0.00 0.00 0.00 6.08 3.29 23.23 141.46 0.00 0.00 538.83 - 10.45 51.08 1964 0.00 0.09 2.33 0.00 55.41 0.00 130.84 184.51 0.00 0.00 0.42 0.39 0.28 0.00 0.00 0.00 0.00 6.08 3.42 23.36 144.46 0.00 0.00 551.59 - 10.45 51.08 1965 0.00 0.00 2.33 0.00 56.62 0.00 134.09 188.69 0.00 0.00 0.42 0.38 0.28 0.00 0.00 0.00 0.00 6.13 3.45 23.66 147.44 0.00 0.00 563.49 - 10.45 51.08 1966 0.00 0.00 2.34 0.00 57.82 0.00 138.99 193.16 0.00 0.00 0.43 0.38 0.28 0.00 0.00 0.00 0.00 6.17 3.47 23.93 150.56 0.00 0.00 577.52 - 10.45 51.08 1967 0.00 0.00 2.35 0.00 59.14 0.00 143.73 197.89 0.00 0.00 0.42 0.37 0.28 0.00 0.00 0.00 0.00 6.24 3.51 24.24 153.94 0.00 0.00 592.10 - 10.45 51.08 1968 0.00 0.00 2.34 0.00 60.12 0.00 147.37 201.52 0.00 0.00 0.43 0.37 0.25 0.00 0.00 0.00 0.00 6.24 3.50 24.37 156.36 0.00 0.00 602.86 - 10.45 51.08 1969 0.00 0.00 2.34 0.00 61.19 0.00 151.34 205.36 0.00 0.00 0.43 0.36 0.24 0.00 0.00 0.00 0.00 6.27 3.52 24.62 159.04 0.00 0.00 614.71 - 10.45 51.08 1970 0.00 0.00 2.33 0.00 62.15 0.00 154.74 208.83 0.00 0.00 0.41 0.35 0.24 0.00 0.00 0.00 0.00 6.27 3.52 24.72 161.34 0.00 0.00 624.90 - 10.45 51.08 1971 0.00 0.00 2.32 0.00 62.97 0.00 157.86 211.88 0.00 0.00 0.41 0.34 0.23 0.00 0.00 0.00 0.00 6.25 3.51 24.75 160.19 0.00 0.00 630.71 - 10.45 51.08 1972 0.00 0.00 0.00 0.00 64.12 0.00 160.94 215.89 0.00 0.00 0.42 0.34 0.23 0.00 0.00 0.00 0.00 3.14 3.52 24.92 162.94 0.00 0.00 636.46 - 10.45 51.08 1973 0.00 0.00 0.00 0.00 64.80 0.00 165.17 219.26 0.00 0.00 0.43 0.34 0.24 0.00 0.00 0.00 0.00 3.17 3.53 25.05 165.03 0.00 0.00 647.02 - 10.45 51.08 1974 0.00 0.00 0.00 0.00 65.55 0.00 168.51 222.31 0.00 0.00 0.44 0.35 0.24 0.00 0.00 0.00 0.00 3.18 3.55 25.15 167.12 0.00 0.00 656.39 - 10.45 51.08 1975 0.00 0.00 0.00 0.00 66.55 0.00 172.81 226.00 0.00 0.00 0.45 0.35 0.25 0.00 0.00 0.00 0.00 3.22 3.59 25.43 169.81 0.00 0.00 668.46 - 10.45 51.08 1976 0.00 0.00 0.00 0.00 67.26 0.00 175.83 228.75 0.00 0.00 0.47 0.35 0.25 0.00 0.00 0.00 0.00 3.22 3.60 25.52 171.69 0.00 0.00 676.95 - 10.45 51.08 1977 0.00 0.00 0.00 0.00 68.34 0.00 179.18 158.41 0.00 0.00 0.47 0.35 0.25 0.00 0.00 0.00 0.00 3.22 3.60 25.56 174.27 0.00 0.00 613.65 - 10.45 51.08 1978 0.00 0.00 0.00 0.00 69.47 0.00 182.48 163.88 0.00 0.00 0.49 0.36 0.26 0.00 0.00 0.00 0.00 3.28 3.66 25.90 177.12 0.00 0.00 626.89 - 10.45 51.08 1979 0.00 0.00 0.00 0.00 70.59 0.00 186.54 166.58 0.00 0.00 0.52 0.37 0.27 0.00 0.00 0.00 0.00 3.33 3.72 26.22 180.08 0.00 0.00 638.21 - 10.45 51.08 1980 0.00 0.00 0.00 0.00 71.48 0.00 190.00 168.57 0.00 0.00 0.55 0.38 0.28 0.00 0.00 0.00 0.00 3.38 3.78 26.51 182.31 0.00 0.00 647.25 - 10.45 51.08 1981 0.00 0.00 0.00 0.00 72.51 0.00 195.46 170.99 0.00 0.00 0.60 0.40 0.30 0.00 0.00 0.00 0.00 3.42 3.82 26.77 184.93 0.00 0.00 659.19 - 10.45 51.08 1982 0.00 0.00 0.00 0.00 73.81 0.00 200.89 173.95 0.00 0.00 0.61 0.41 0.31 0.00 0.00 0.00 0.00 3.49 0.29 27.20 188.25 0.00 0.00 669.20 - 10.45 51.08 1983 0.00 0.00 0.00 0.00 74.89 0.00 204.82 176.43 0.00 0.00 0.65 0.42 0.32 0.00 0.00 0.00 0.00 3.52 0.29 27.43 190.90 0.00 0.00 679.69 - 10.45 51.08 1984 0.00 0.00 0.00 0.00 76.22 0.00 208.94 179.47 0.00 0.00 0.67 0.43 0.33 0.00 0.00 0.00 0.00 3.57 0.30 27.68 194.19 0.00 0.00 691.80 - 10.45 51.08 1985 0.00 0.00 0.00 0.00 76.99 0.00 213.10 181.41 0.00 0.00 0.70 0.44 0.34 0.00 0.00 0.00 0.00 3.60 0.31 27.85 196.26 0.00 0.00 700.99 - 10.45 51.08 1986 0.00 0.00 0.00 0.00 78.38 0.00 217.95 184.68 0.00 0.00 0.73 0.45 0.30 0.00 0.00 0.00 0.00 3.66 0.32 28.22 199.85 0.00 0.00 714.53 - 10.45 51.08 1987 0.00 0.00 0.00 0.00 79.54 0.00 222.81 187.43 0.00 0.00 0.76 0.45 0.31 0.00 0.00 0.00 0.00 3.69 0.33 28.40 202.75 0.00 0.00 726.46 - 10.45 51.08 1988 0.00 0.00 0.00 0.00 80.64 0.00 227.85 189.99 0.00 0.00 0.78 0.46 0.32 0.00 0.00 0.00 0.00 3.74 0.34 28.67 205.55 0.00 0.00 738.34 - 10.45 51.08 1989 0.00 0.00 0.00 0.00 81.93 0.00 233.36 192.96 0.00 0.00 0.83 0.48 0.33 0.00 0.00 0.00 0.00 3.81 0.35 29.04 208.85 0.00 0.00 751.94 - 10.45 51.08 1990 0.00 0.00 0.00 0.00 83.62 0.00 240.49 196.83 0.00 0.00 0.89 0.50 0.35 0.00 0.00 0.00 0.00 3.89 0.37 29.47 213.15 0.00 0.00 769.56 - 10.45 51.08 1991 0.00 0.00 0.00 0.00 85.42 0.00 247.20 200.94 0.00 0.00 0.96 0.52 0.37 0.00 0.00 0.00 0.00 4.00 0.40 30.00 217.79 0.00 0.00 787.59 - 10.45 51.08 1992 0.00 0.00 0.00 0.00 86.66 0.00 252.16 203.87 0.00 0.00 0.98 0.52 0.37 0.00 0.00 0.00 0.00 4.05 0.41 30.25 220.99 0.00 0.00 800.27 - 10.45 51.08 1993 0.00 0.00 0.00 0.00 87.47 0.00 257.97 205.90 0.00 0.00 1.03 0.53 0.39 0.00 0.00 0.00 0.00 4.07 0.42 30.36 223.12 0.00 0.00 811.26 - 10.45 51.08 1994 0.00 0.00 0.00 0.00 88.84 0.00 263.25 209.10 0.00 0.00 1.04 0.53 0.39 0.00 0.00 0.00 0.00 4.13 0.43 30.66 226.61 0.00 0.00 825.00 - 10.45 51.08 1995 0.00 0.00 0.00 0.00 89.90 0.00 268.53 211.56 0.00 0.00 0.93 0.53 0.39 0.00 0.00 0.00 0.00 4.16 0.44 30.81 229.22 0.00 0.00 836.46 - 10.45 51.08 1996 0.00 0.00 0.00 0.00 90.86 0.00 271.57 213.93 0.00 0.00 0.94 0.53 0.39 0.00 0.00 0.00 0.00 4.17 0.45 30.88 231.66 0.00 0.00 845.39 - 10.45 51.08 1997 0.00 0.00 0.00 0.00 91.76 0.00 275.86 215.99 0.00 0.00 0.95 0.53 0.39 0.00 0.00 0.00 0.00 4.20 0.45 27.62 233.86 0.00 0.00 851.61 - 10.45 51.08 1998 0.00 0.00 0.00 0.00 92.93 0.00 281.21 218.72 0.00 0.00 0.99 0.54 0.41 0.00 0.00 0.00 0.00 4.25 0.47 27.83 236.84 0.00 0.00 864.19 - 10.45 51.08 1999 0.00 0.00 0.00 0.00 94.16 0.00 287.17 221.49 0.00 0.00 1.01 0.55 0.41 0.00 0.00 0.00 0.00 4.32 0.49 28.09 239.93 0.00 0.00 877.61 - 10.45 51.08 2000 0.00 0.00 0.00 0.00 95.48 0.00 293.57 224.57 0.00 0.00 1.05 0.55 0.42 0.00 0.00 0.00 0.00 4.39 0.51 28.35 243.36 0.00 0.00 892.24 - 10.45 51.08 2001 0.00 0.00 0.00 0.00 96.61 0.00 298.70 227.14 0.00 0.00 1.09 0.56 0.44 0.00 0.00 0.00 0.00 4.42 0.53 28.51 246.12 0.00 0.00 904.13 - 10.45 51.08 2002 0.00 0.00 0.00 0.00 9.32 0.00 303.72 229.92 0.00 0.00 1.11 0.56 0.44 0.00 0.00 0.00 0.00 4.48 0.55 28.69 249.17 0.00 0.00 827.94 - 10.45 51.08 2003 0.00 0.00 0.00 0.00 9.48 0.00 308.64 232.40 0.00 0.00 1.14 0.57 0.45 0.00 0.00 0.00 0.00 4.54 0.58 28.90 251.97 0.00 0.00 838.66 - 10.45 51.08 2004 0.00 0.00 0.00 0.00 9.63 0.00 314.58 235.55 0.00 0.00 1.20 0.59 0.47 0.00 0.00 0.00 0.00 4.60 0.60 29.09 255.40 0.00 0.00 851.69 - 10.45 51.08 2005 0.00 0.00 0.00 0.00 9.94 0.00 322.88 239.70 0.00 0.00 1.26 0.60 0.48 0.00 0.00 0.00 0.00 4.72 0.65 29.49 260.17 0.00 0.00 869.89 - 10.45 51.08 2006 0.00 0.00 0.00 0.00 10.16 0.00 331.36 243.59 0.00 0.00 1.30 0.61 0.50 0.00 0.00 0.00 0.00 4.80 0.69 29.77 264.48 0.00 0.00 887.26 - 10.45 51.08 2007 0.00 0.00 0.00 0.00 9.59 0.00 336.81 246.98 0.00 0.00 1.31 0.61 0.50 0.00 0.00 0.00 0.00 4.83 0.71 29.85 267.97 0.00 0.00 899.15 - 10.45 51.08 2008 0.00 0.00 0.00 0.00 9.83 0.00 342.02 251.11 0.00 0.00 1.42 0.65 0.53 0.00 0.00 0.00 0.00 4.92 0.75 30.08 272.60 0.00 0.00 913.90 - 10.45 51.08 2009 0.00 0.00 0.00 0.00 9.97 0.00 349.95 254.22 0.00 0.00 1.47 0.65 0.54 0.00 0.00 0.00 0.00 4.99 0.79 30.29 271.08 0.00 0.00 923.96 - 10.45 51.08 2010 0.00 0.00 0.00 0.00 10.14 0.00 355.44 257.29 0.00 0.00 1.52 0.67 0.56 0.00 0.00 0.00 0.00 5.07 0.82 30.56 274.46 0.00 0.00 936.53 - 10.45 51.08 2011 0.00 0.00 0.00 0.00 10.21 0.00 362.61 260.10 0.00 0.00 1.53 0.66 0.56 0.00 0.00 0.00 0.00 5.11 0.84 30.66 271.48 0.00 0.00 943.75 - 10.45 51.08 2012 0.00 0.00 0.00 0.00 10.45 0.00 369.63 264.06 0.00 0.00 1.61 0.68 0.58 0.00 0.00 0.00 0.00 5.22 0.89 31.03 275.73 0.00 0.00 959.87 diff --git a/rLPJGUESS/inst/extdata/outputsForTests/run_estinterval/outDirectory/npool.out b/rLPJGUESS/inst/extdata/outputsForTests/run_estinterval/outDirectory/npool.out deleted file mode 100644 index f7a0c3b..0000000 --- a/rLPJGUESS/inst/extdata/outputsForTests/run_estinterval/outDirectory/npool.out +++ /dev/null @@ -1,63 +0,0 @@ - Lon Lat Year VegN LitterN SoilN Total - 10.45 51.08 1951 0.0415 0.0234 0.9897 1.0547 - 10.45 51.08 1952 0.0426 0.0230 0.9878 1.0534 - 10.45 51.08 1953 0.0436 0.0221 0.9865 1.0521 - 10.45 51.08 1954 0.0450 0.0223 0.9854 1.0527 - 10.45 51.08 1955 0.0461 0.0226 0.9850 1.0537 - 10.45 51.08 1956 0.0467 0.0230 0.9852 1.0549 - 10.45 51.08 1957 0.0478 0.0222 0.9842 1.0542 - 10.45 51.08 1958 0.0488 0.0219 0.9831 1.0539 - 10.45 51.08 1959 0.0499 0.0206 0.9812 1.0518 - 10.45 51.08 1960 0.0515 0.0208 0.9803 1.0526 - 10.45 51.08 1961 0.0523 0.0202 0.9795 1.0520 - 10.45 51.08 1962 0.0535 0.0201 0.9783 1.0520 - 10.45 51.08 1963 0.0539 0.0207 0.9776 1.0522 - 10.45 51.08 1964 0.0552 0.0198 0.9759 1.0509 - 10.45 51.08 1965 0.0563 0.0202 0.9758 1.0523 - 10.45 51.08 1966 0.0578 0.0198 0.9755 1.0531 - 10.45 51.08 1967 0.0592 0.0193 0.9744 1.0528 - 10.45 51.08 1968 0.0603 0.0190 0.9734 1.0526 - 10.45 51.08 1969 0.0615 0.0188 0.9724 1.0526 - 10.45 51.08 1970 0.0625 0.0188 0.9717 1.0529 - 10.45 51.08 1971 0.0631 0.0179 0.9703 1.0513 - 10.45 51.08 1972 0.0636 0.0188 0.9706 1.0531 - 10.45 51.08 1973 0.0647 0.0179 0.9689 1.0515 - 10.45 51.08 1974 0.0656 0.0179 0.9687 1.0523 - 10.45 51.08 1975 0.0668 0.0170 0.9672 1.0510 - 10.45 51.08 1976 0.0677 0.0162 0.9653 1.0492 - 10.45 51.08 1977 0.0614 0.0227 0.9664 1.0505 - 10.45 51.08 1978 0.0627 0.0220 0.9662 1.0509 - 10.45 51.08 1979 0.0638 0.0213 0.9654 1.0506 - 10.45 51.08 1980 0.0647 0.0208 0.9648 1.0503 - 10.45 51.08 1981 0.0659 0.0204 0.9645 1.0508 - 10.45 51.08 1982 0.0669 0.0190 0.9622 1.0481 - 10.45 51.08 1983 0.0680 0.0183 0.9610 1.0473 - 10.45 51.08 1984 0.0692 0.0189 0.9613 1.0493 - 10.45 51.08 1985 0.0701 0.0180 0.9605 1.0486 - 10.45 51.08 1986 0.0715 0.0178 0.9594 1.0486 - 10.45 51.08 1987 0.0726 0.0182 0.9595 1.0503 - 10.45 51.08 1988 0.0738 0.0169 0.9581 1.0489 - 10.45 51.08 1989 0.0752 0.0162 0.9565 1.0478 - 10.45 51.08 1990 0.0770 0.0157 0.9552 1.0479 - 10.45 51.08 1991 0.0788 0.0152 0.9538 1.0478 - 10.45 51.08 1992 0.0800 0.0150 0.9526 1.0476 - 10.45 51.08 1993 0.0811 0.0152 0.9523 1.0486 - 10.45 51.08 1994 0.0825 0.0148 0.9513 1.0486 - 10.45 51.08 1995 0.0836 0.0149 0.9509 1.0494 - 10.45 51.08 1996 0.0845 0.0155 0.9511 1.0512 - 10.45 51.08 1997 0.0852 0.0149 0.9502 1.0503 - 10.45 51.08 1998 0.0864 0.0146 0.9494 1.0504 - 10.45 51.08 1999 0.0878 0.0142 0.9484 1.0503 - 10.45 51.08 2000 0.0892 0.0137 0.9471 1.0500 - 10.45 51.08 2001 0.0904 0.0136 0.9463 1.0503 - 10.45 51.08 2002 0.0828 0.0214 0.9470 1.0512 - 10.45 51.08 2003 0.0839 0.0199 0.9458 1.0496 - 10.45 51.08 2004 0.0852 0.0194 0.9454 1.0499 - 10.45 51.08 2005 0.0870 0.0190 0.9448 1.0508 - 10.45 51.08 2006 0.0887 0.0185 0.9441 1.0513 - 10.45 51.08 2007 0.0899 0.0184 0.9443 1.0525 - 10.45 51.08 2008 0.0914 0.0176 0.9431 1.0521 - 10.45 51.08 2009 0.0924 0.0177 0.9427 1.0529 - 10.45 51.08 2010 0.0937 0.0179 0.9429 1.0544 - 10.45 51.08 2011 0.0944 0.0175 0.9422 1.0540 - 10.45 51.08 2012 0.0960 0.0171 0.9416 1.0547 diff --git a/rLPJGUESS/inst/extdata/outputsForTests/run_estinterval/outDirectory/nsources.out b/rLPJGUESS/inst/extdata/outputsForTests/run_estinterval/outDirectory/nsources.out deleted file mode 100644 index 3e59de8..0000000 --- a/rLPJGUESS/inst/extdata/outputsForTests/run_estinterval/outDirectory/nsources.out +++ /dev/null @@ -1,63 +0,0 @@ - Lon Lat Year dep fix fert input min imm netmin Total - 10.45 51.08 1951 11.23 2.24 0.00 13.47 138.96 40.39 98.57 112.04 - 10.45 51.08 1952 11.23 2.04 0.00 13.27 147.17 32.11 115.06 128.33 - 10.45 51.08 1953 11.23 2.20 0.00 13.43 162.61 48.71 113.90 127.32 - 10.45 51.08 1954 11.23 2.60 0.00 13.83 133.73 34.51 99.22 113.06 - 10.45 51.08 1955 11.23 2.39 0.00 13.62 120.52 31.02 89.50 103.12 - 10.45 51.08 1956 11.23 2.51 0.00 13.74 117.15 32.29 84.86 98.60 - 10.45 51.08 1957 11.23 2.60 0.00 13.83 142.90 38.34 104.56 118.39 - 10.45 51.08 1958 11.23 2.29 0.00 13.52 135.81 34.90 100.91 114.43 - 10.45 51.08 1959 11.23 2.41 0.00 13.64 159.61 44.13 115.48 129.11 - 10.45 51.08 1960 14.10 2.69 0.00 16.79 127.95 33.85 94.11 110.90 - 10.45 51.08 1961 14.10 2.59 0.00 16.69 146.51 45.33 101.18 117.86 - 10.45 51.08 1962 14.10 2.70 0.00 16.80 129.35 33.16 96.19 112.99 - 10.45 51.08 1963 14.10 2.32 0.00 16.42 122.65 30.64 92.01 108.43 - 10.45 51.08 1964 14.10 2.09 0.00 16.18 141.29 33.46 107.83 124.01 - 10.45 51.08 1965 14.10 2.68 0.00 16.78 110.48 31.11 79.37 96.15 - 10.45 51.08 1966 14.10 2.51 0.00 16.61 120.80 34.18 86.62 103.23 - 10.45 51.08 1967 14.10 2.53 0.00 16.63 135.01 36.58 98.42 115.05 - 10.45 51.08 1968 14.10 2.51 0.00 16.61 127.87 33.23 94.64 111.26 - 10.45 51.08 1969 14.10 2.41 0.00 16.51 122.38 28.85 93.53 110.04 - 10.45 51.08 1970 16.97 2.34 0.00 19.30 114.98 28.29 86.69 105.99 - 10.45 51.08 1971 16.97 2.39 0.00 19.36 141.66 38.04 103.63 122.98 - 10.45 51.08 1972 16.97 2.69 0.00 19.66 102.12 31.55 70.56 90.23 - 10.45 51.08 1973 16.97 2.07 0.00 19.04 136.66 33.83 102.83 121.87 - 10.45 51.08 1974 16.97 2.54 0.00 19.51 114.51 36.29 78.22 97.73 - 10.45 51.08 1975 16.97 2.11 0.00 19.08 138.06 38.33 99.73 118.80 - 10.45 51.08 1976 16.97 2.17 0.00 19.14 139.67 38.36 101.31 120.45 - 10.45 51.08 1977 16.97 2.50 0.00 19.47 102.65 39.61 63.04 82.51 - 10.45 51.08 1978 16.97 2.56 0.00 19.53 112.17 39.21 72.97 92.50 - 10.45 51.08 1979 16.97 2.13 0.00 19.10 115.40 35.16 80.24 99.34 - 10.45 51.08 1980 17.99 2.21 0.00 20.20 115.71 37.79 77.92 98.12 - 10.45 51.08 1981 17.99 2.31 0.00 20.30 109.21 36.01 73.20 93.50 - 10.45 51.08 1982 17.99 2.13 0.00 20.13 150.92 45.79 105.14 125.27 - 10.45 51.08 1983 17.99 1.86 0.00 19.85 126.47 42.00 84.47 104.32 - 10.45 51.08 1984 17.99 2.33 0.00 20.33 90.99 31.52 59.47 79.80 - 10.45 51.08 1985 17.99 2.21 0.00 20.20 120.75 37.94 82.81 103.02 - 10.45 51.08 1986 17.99 2.24 0.00 20.24 111.11 31.03 80.08 100.32 - 10.45 51.08 1987 17.99 2.36 0.00 20.35 90.46 28.30 62.16 82.51 - 10.45 51.08 1988 17.99 2.20 0.00 20.20 135.03 41.35 93.68 113.88 - 10.45 51.08 1989 17.99 2.32 0.00 20.32 133.73 41.59 92.15 112.47 - 10.45 51.08 1990 19.66 2.56 0.00 22.22 124.39 39.39 85.00 107.22 - 10.45 51.08 1991 19.66 2.57 0.00 22.23 127.14 38.16 88.98 111.21 - 10.45 51.08 1992 19.66 2.12 0.00 21.78 121.49 35.68 85.81 107.59 - 10.45 51.08 1993 19.66 2.28 0.00 21.94 103.07 30.56 72.50 94.44 - 10.45 51.08 1994 19.66 2.48 0.00 22.14 120.04 33.49 86.55 108.69 - 10.45 51.08 1995 19.66 2.51 0.00 22.16 108.61 32.57 76.05 98.21 - 10.45 51.08 1996 19.66 2.59 0.00 22.24 88.80 24.85 63.94 86.19 - 10.45 51.08 1997 19.66 2.60 0.00 22.26 124.18 35.54 88.64 110.90 - 10.45 51.08 1998 19.66 2.79 0.00 22.44 116.15 33.71 82.44 104.88 - 10.45 51.08 1999 19.66 2.58 0.00 22.23 122.08 36.72 85.36 107.60 - 10.45 51.08 2000 21.34 2.47 0.00 23.81 124.26 35.00 89.26 113.07 - 10.45 51.08 2001 21.34 2.67 0.00 24.01 113.94 33.32 80.62 104.63 - 10.45 51.08 2002 21.34 2.65 0.00 24.00 106.44 37.81 68.63 92.63 - 10.45 51.08 2003 21.34 2.34 0.00 23.68 135.39 42.32 93.06 116.75 - 10.45 51.08 2004 21.34 2.67 0.00 24.02 115.32 39.91 75.42 99.43 - 10.45 51.08 2005 21.34 2.65 0.00 23.99 112.73 35.48 77.24 101.23 - 10.45 51.08 2006 21.34 2.56 0.00 23.91 115.80 34.94 80.86 104.76 - 10.45 51.08 2007 21.34 2.56 0.00 23.90 108.31 37.43 70.88 94.79 - 10.45 51.08 2008 21.34 2.61 0.00 23.95 127.38 37.47 89.92 113.87 - 10.45 51.08 2009 21.34 2.64 0.00 23.98 112.83 34.79 78.05 102.03 - 10.45 51.08 2010 20.03 2.80 0.00 22.83 99.14 28.44 70.70 93.53 - 10.45 51.08 2011 20.03 2.67 0.00 22.70 123.54 37.67 85.87 108.57 - 10.45 51.08 2012 20.03 2.75 0.00 22.78 118.28 36.49 81.79 104.57 diff --git a/rLPJGUESS/inst/extdata/outputsForTests/run_estinterval/outDirectory/nuptake.out b/rLPJGUESS/inst/extdata/outputsForTests/run_estinterval/outDirectory/nuptake.out deleted file mode 100644 index 82ef16f..0000000 --- a/rLPJGUESS/inst/extdata/outputsForTests/run_estinterval/outDirectory/nuptake.out +++ /dev/null @@ -1,63 +0,0 @@ - Lon Lat Year Abi_alb BES Bet_pen Bet_pub Car_bet Cor_ave Fag_syl Fra_exc Jun_oxy MRS Pic_abi Pic_sit Pin_syl Pin_hal Pop_tre Que_coc Que_ile Que_pub Que_rob Til_cor Ulm_gla C3_gr C4_gr Total - 10.45 51.08 1951 0.00 0.08 1.44 1.27 9.85 0.00 20.67 32.55 0.00 0.00 0.18 0.18 0.15 0.00 0.00 0.00 0.00 1.71 2.91 4.95 27.88 0.00 0.00 103.82 - 10.45 51.08 1952 0.00 0.09 1.40 1.29 9.88 0.00 21.42 32.80 0.00 0.00 0.19 0.18 0.16 0.00 0.00 0.00 0.00 1.71 2.81 4.96 27.10 0.00 0.00 103.98 - 10.45 51.08 1953 0.00 0.07 1.22 1.21 9.79 0.00 21.29 31.73 0.00 0.00 0.16 0.15 0.13 0.00 0.00 0.00 0.00 1.60 2.56 4.79 26.60 0.00 0.00 101.32 - 10.45 51.08 1954 0.00 0.08 1.19 1.28 10.15 0.00 22.86 32.14 0.00 0.00 0.17 0.15 0.14 0.00 0.00 0.00 0.00 1.67 2.67 4.95 27.64 0.00 0.00 105.10 - 10.45 51.08 1955 0.00 0.06 1.09 1.20 9.64 0.00 22.01 30.60 0.00 0.00 0.17 0.15 0.13 0.00 0.00 0.00 0.00 1.57 2.42 4.70 26.22 0.00 0.00 99.97 - 10.45 51.08 1956 0.00 0.04 1.01 1.17 9.38 0.00 21.95 29.12 0.00 0.00 0.15 0.13 0.12 0.00 0.00 0.00 0.00 1.49 2.31 4.54 25.39 0.00 0.00 96.81 - 10.45 51.08 1957 0.00 0.04 0.98 1.16 9.44 0.00 22.53 29.39 0.00 0.00 0.16 0.13 0.12 0.00 0.00 0.00 0.00 1.48 2.29 4.56 25.51 0.00 0.00 97.79 - 10.45 51.08 1958 0.00 0.04 0.93 1.15 9.55 0.00 23.01 29.89 0.00 0.00 0.15 0.12 0.11 0.00 0.00 0.00 0.00 1.43 2.21 4.59 24.93 0.00 0.00 98.11 - 10.45 51.08 1959 0.00 0.04 0.83 1.09 9.31 0.00 23.09 29.40 0.00 0.00 0.13 0.11 0.10 0.00 0.00 0.00 0.00 1.38 2.13 4.36 24.42 0.00 0.00 96.39 - 10.45 51.08 1960 0.00 0.04 0.42 1.13 9.90 0.00 24.60 31.46 0.00 0.00 0.14 0.11 0.10 0.00 0.00 0.00 0.00 1.42 2.20 4.50 25.94 0.00 0.00 101.96 - 10.45 51.08 1961 0.00 0.02 0.38 1.07 9.38 0.00 23.75 29.77 0.00 0.00 0.14 0.10 0.10 0.00 0.00 0.00 0.00 1.32 1.38 4.24 24.49 0.00 0.00 96.12 - 10.45 51.08 1962 0.00 0.02 0.37 0.00 9.38 0.00 23.83 29.73 0.00 0.00 0.13 0.10 0.08 0.00 0.00 0.00 0.00 1.31 1.37 4.25 24.44 0.00 0.00 95.01 - 10.45 51.08 1963 0.00 0.02 0.35 0.00 9.28 0.00 24.89 29.71 0.00 0.00 0.13 0.09 0.08 0.00 0.00 0.00 0.00 1.27 0.69 4.08 24.29 0.00 0.00 94.89 - 10.45 51.08 1964 0.00 0.00 0.33 0.00 9.33 0.00 24.98 29.91 0.00 0.00 0.12 0.09 0.08 0.00 0.00 0.00 0.00 1.21 0.66 3.85 24.26 0.00 0.00 94.82 - 10.45 51.08 1965 0.00 0.00 0.32 0.00 9.29 0.00 24.56 29.59 0.00 0.00 0.12 0.08 0.07 0.00 0.00 0.00 0.00 1.22 0.67 3.91 24.07 0.00 0.00 93.90 - 10.45 51.08 1966 0.00 0.00 0.30 0.00 9.20 0.00 25.72 29.55 0.00 0.00 0.13 0.09 0.08 0.00 0.00 0.00 0.00 1.19 0.65 3.82 23.93 0.00 0.00 94.66 - 10.45 51.08 1967 0.00 0.00 0.30 0.00 9.34 0.00 26.41 30.02 0.00 0.00 0.12 0.08 0.07 0.00 0.00 0.00 0.00 1.19 0.65 3.80 24.26 0.00 0.00 96.24 - 10.45 51.08 1968 0.00 0.00 0.27 0.00 9.01 0.00 25.60 28.99 0.00 0.00 0.13 0.08 0.07 0.00 0.00 0.00 0.00 1.11 0.61 3.57 23.30 0.00 0.00 92.74 - 10.45 51.08 1969 0.00 0.00 0.26 0.00 9.00 0.00 26.17 28.97 0.00 0.00 0.12 0.07 0.06 0.00 0.00 0.00 0.00 1.11 0.61 3.59 23.27 0.00 0.00 93.24 - 10.45 51.08 1970 0.00 0.00 0.24 0.00 8.80 0.00 25.68 28.35 0.00 0.00 0.11 0.07 0.06 0.00 0.00 0.00 0.00 1.04 0.57 3.36 22.63 0.00 0.00 90.92 - 10.45 51.08 1971 0.00 0.00 0.00 0.00 8.60 0.00 25.59 27.76 0.00 0.00 0.11 0.06 0.05 0.00 0.00 0.00 0.00 1.00 0.55 3.20 21.57 0.00 0.00 88.50 - 10.45 51.08 1972 0.00 0.00 0.00 0.00 8.73 0.00 25.38 28.16 0.00 0.00 0.12 0.07 0.06 0.00 0.00 0.00 0.00 0.50 0.55 3.19 21.81 0.00 0.00 88.55 - 10.45 51.08 1973 0.00 0.00 0.00 0.00 8.42 0.00 26.27 27.47 0.00 0.00 0.13 0.07 0.06 0.00 0.00 0.00 0.00 0.48 0.53 3.08 21.22 0.00 0.00 87.74 - 10.45 51.08 1974 0.00 0.00 0.00 0.00 8.15 0.00 25.82 26.84 0.00 0.00 0.13 0.07 0.06 0.00 0.00 0.00 0.00 0.47 0.52 2.97 20.72 0.00 0.00 85.75 - 10.45 51.08 1975 0.00 0.00 0.00 0.00 8.27 0.00 26.86 27.15 0.00 0.00 0.14 0.07 0.06 0.00 0.00 0.00 0.00 0.49 0.54 3.05 21.03 0.00 0.00 87.66 - 10.45 51.08 1976 0.00 0.00 0.00 0.00 7.92 0.00 25.78 26.08 0.00 0.00 0.14 0.07 0.06 0.00 0.00 0.00 0.00 0.46 0.51 2.84 20.14 0.00 0.00 84.02 - 10.45 51.08 1977 0.00 0.00 0.00 0.00 8.12 0.00 26.01 18.22 0.00 0.00 0.14 0.07 0.06 0.00 0.00 0.00 0.00 0.43 0.48 2.69 20.39 0.00 0.00 76.61 - 10.45 51.08 1978 0.00 0.00 0.00 0.00 8.15 0.00 26.04 18.19 0.00 0.00 0.15 0.08 0.07 0.00 0.00 0.00 0.00 0.47 0.53 2.89 20.56 0.00 0.00 77.12 - 10.45 51.08 1979 0.00 0.00 0.00 0.00 8.12 0.00 26.36 18.22 0.00 0.00 0.17 0.08 0.07 0.00 0.00 0.00 0.00 0.48 0.54 2.88 20.62 0.00 0.00 77.54 - 10.45 51.08 1980 0.00 0.00 0.00 0.00 7.88 0.00 25.81 17.50 0.00 0.00 0.18 0.09 0.08 0.00 0.00 0.00 0.00 0.48 0.55 2.85 19.92 0.00 0.00 75.35 - 10.45 51.08 1981 0.00 0.00 0.00 0.00 7.94 0.00 27.78 17.67 0.00 0.00 0.21 0.10 0.09 0.00 0.00 0.00 0.00 0.48 0.07 2.80 20.07 0.00 0.00 77.19 - 10.45 51.08 1982 0.00 0.00 0.00 0.00 8.21 0.00 29.04 18.20 0.00 0.00 0.19 0.09 0.08 0.00 0.00 0.00 0.00 0.52 0.07 2.96 20.78 0.00 0.00 80.15 - 10.45 51.08 1983 0.00 0.00 0.00 0.00 8.01 0.00 27.75 17.72 0.00 0.00 0.22 0.10 0.10 0.00 0.00 0.00 0.00 0.49 0.07 2.80 20.17 0.00 0.00 77.42 - 10.45 51.08 1984 0.00 0.00 0.00 0.00 8.23 0.00 28.27 18.21 0.00 0.00 0.21 0.09 0.09 0.00 0.00 0.00 0.00 0.50 0.08 2.79 20.73 0.00 0.00 79.21 - 10.45 51.08 1985 0.00 0.00 0.00 0.00 7.71 0.00 28.03 17.12 0.00 0.00 0.23 0.10 0.10 0.00 0.00 0.00 0.00 0.49 0.08 2.68 19.56 0.00 0.00 76.11 - 10.45 51.08 1986 0.00 0.00 0.00 0.00 8.23 0.00 29.33 18.27 0.00 0.00 0.24 0.10 0.09 0.00 0.00 0.00 0.00 0.52 0.09 2.82 20.86 0.00 0.00 80.56 - 10.45 51.08 1987 0.00 0.00 0.00 0.00 8.07 0.00 29.31 17.90 0.00 0.00 0.25 0.10 0.09 0.00 0.00 0.00 0.00 0.50 0.09 2.66 20.38 0.00 0.00 79.35 - 10.45 51.08 1988 0.00 0.00 0.00 0.00 8.02 0.00 29.97 17.71 0.00 0.00 0.26 0.11 0.09 0.00 0.00 0.00 0.00 0.51 0.09 2.71 20.25 0.00 0.00 79.71 - 10.45 51.08 1989 0.00 0.00 0.00 0.00 8.18 0.00 30.92 18.04 0.00 0.00 0.29 0.12 0.10 0.00 0.00 0.00 0.00 0.53 0.10 2.79 20.71 0.00 0.00 81.77 - 10.45 51.08 1990 0.00 0.00 0.00 0.00 8.63 0.00 32.91 19.01 0.00 0.00 0.31 0.13 0.11 0.00 0.00 0.00 0.00 0.56 0.11 2.88 21.83 0.00 0.00 86.48 - 10.45 51.08 1991 0.00 0.00 0.00 0.00 8.88 0.00 33.12 19.52 0.00 0.00 0.34 0.13 0.12 0.00 0.00 0.00 0.00 0.60 0.13 3.01 22.53 0.00 0.00 88.39 - 10.45 51.08 1992 0.00 0.00 0.00 0.00 8.50 0.00 31.60 18.69 0.00 0.00 0.32 0.12 0.11 0.00 0.00 0.00 0.00 0.58 0.13 2.82 21.57 0.00 0.00 84.45 - 10.45 51.08 1993 0.00 0.00 0.00 0.00 8.08 0.00 32.63 17.80 0.00 0.00 0.35 0.13 0.12 0.00 0.00 0.00 0.00 0.55 0.12 2.64 20.53 0.00 0.00 82.96 - 10.45 51.08 1994 0.00 0.00 0.00 0.00 8.50 0.00 33.31 18.70 0.00 0.00 0.34 0.12 0.11 0.00 0.00 0.00 0.00 0.57 0.13 2.77 21.56 0.00 0.00 86.12 - 10.45 51.08 1995 0.00 0.00 0.00 0.00 8.23 0.00 33.28 18.03 0.00 0.00 0.29 0.12 0.12 0.00 0.00 0.00 0.00 0.55 0.13 2.61 20.78 0.00 0.00 84.15 - 10.45 51.08 1996 0.00 0.00 0.00 0.00 8.09 0.00 31.67 17.80 0.00 0.00 0.29 0.12 0.11 0.00 0.00 0.00 0.00 0.53 0.13 2.05 20.46 0.00 0.00 81.25 - 10.45 51.08 1997 0.00 0.00 0.00 0.00 7.93 0.00 32.47 17.35 0.00 0.00 0.28 0.11 0.11 0.00 0.00 0.00 0.00 0.53 0.13 2.04 19.98 0.00 0.00 80.93 - 10.45 51.08 1998 0.00 0.00 0.00 0.00 8.11 0.00 33.72 17.77 0.00 0.00 0.32 0.13 0.12 0.00 0.00 0.00 0.00 0.54 0.14 2.07 20.49 0.00 0.00 83.41 - 10.45 51.08 1999 0.00 0.00 0.00 0.00 8.15 0.00 34.64 17.76 0.00 0.00 0.32 0.12 0.12 0.00 0.00 0.00 0.00 0.56 0.15 2.11 20.58 0.00 0.00 84.51 - 10.45 51.08 2000 0.00 0.00 0.00 0.00 8.26 0.00 35.50 18.06 0.00 0.00 0.33 0.13 0.12 0.00 0.00 0.00 0.00 0.57 0.16 2.11 20.94 0.00 0.00 86.19 - 10.45 51.08 2001 0.00 0.00 0.00 0.00 1.31 0.00 34.70 17.63 0.00 0.00 0.35 0.13 0.13 0.00 0.00 0.00 0.00 0.55 0.16 2.01 20.40 0.00 0.00 77.37 - 10.45 51.08 2002 0.00 0.00 0.00 0.00 1.32 0.00 34.94 17.74 0.00 0.00 0.34 0.12 0.12 0.00 0.00 0.00 0.00 0.57 0.17 2.00 20.57 0.00 0.00 77.89 - 10.45 51.08 2003 0.00 0.00 0.00 0.00 1.38 0.00 34.93 17.45 0.00 0.00 0.36 0.13 0.13 0.00 0.00 0.00 0.00 0.58 0.18 2.02 20.36 0.00 0.00 77.53 - 10.45 51.08 2004 0.00 0.00 0.00 0.00 1.39 0.00 35.90 17.96 0.00 0.00 0.39 0.14 0.14 0.00 0.00 0.00 0.00 0.58 0.19 1.98 20.86 0.00 0.00 79.53 - 10.45 51.08 2005 0.00 0.00 0.00 0.00 1.57 0.00 39.08 19.09 0.00 0.00 0.41 0.15 0.14 0.00 0.00 0.00 0.00 0.65 0.22 2.18 22.35 0.00 0.00 85.86 - 10.45 51.08 2006 0.00 0.00 0.00 0.00 1.56 0.00 39.63 19.16 0.00 0.00 0.41 0.15 0.14 0.00 0.00 0.00 0.00 0.64 0.22 2.10 22.37 0.00 0.00 86.39 - 10.45 51.08 2007 0.00 0.00 0.00 0.00 1.27 0.00 37.85 18.92 0.00 0.00 0.39 0.13 0.14 0.00 0.00 0.00 0.00 0.59 0.21 1.92 21.89 0.00 0.00 83.32 - 10.45 51.08 2008 0.00 0.00 0.00 0.00 1.36 0.00 38.03 19.75 0.00 0.00 0.49 0.17 0.17 0.00 0.00 0.00 0.00 0.66 0.24 2.02 23.04 0.00 0.00 85.93 - 10.45 51.08 2009 0.00 0.00 0.00 0.00 1.37 0.00 40.22 19.00 0.00 0.00 0.46 0.16 0.16 0.00 0.00 0.00 0.00 0.65 0.25 1.99 21.59 0.00 0.00 85.84 - 10.45 51.08 2010 0.00 0.00 0.00 0.00 1.42 0.00 39.15 18.97 0.00 0.00 0.49 0.16 0.16 0.00 0.00 0.00 0.00 0.67 0.26 2.04 21.38 0.00 0.00 84.69 - 10.45 51.08 2011 0.00 0.00 0.00 0.00 1.33 0.00 40.51 18.73 0.00 0.00 0.45 0.15 0.15 0.00 0.00 0.00 0.00 0.63 0.25 1.88 20.37 0.00 0.00 84.45 - 10.45 51.08 2012 0.00 0.00 0.00 0.00 1.50 0.00 41.65 19.74 0.00 0.00 0.53 0.17 0.17 0.00 0.00 0.00 0.00 0.70 0.28 2.10 21.55 0.00 0.00 88.40 diff --git a/rLPJGUESS/inst/extdata/outputsForTests/run_estinterval/outDirectory/runoff.out b/rLPJGUESS/inst/extdata/outputsForTests/run_estinterval/outDirectory/runoff.out deleted file mode 100644 index 97bd6bf..0000000 --- a/rLPJGUESS/inst/extdata/outputsForTests/run_estinterval/outDirectory/runoff.out +++ /dev/null @@ -1,63 +0,0 @@ - Lon Lat Year Surf Drain Base Total - 10.45 51.08 1951 73.6 46.1 6.4 126.0 - 10.45 51.08 1952 141.8 156.6 16.9 315.3 - 10.45 51.08 1953 32.0 51.5 2.5 86.0 - 10.45 51.08 1954 18.5 86.8 1.0 106.3 - 10.45 51.08 1955 52.4 122.1 10.2 184.7 - 10.45 51.08 1956 115.4 146.8 15.8 277.9 - 10.45 51.08 1957 10.2 109.5 0.8 120.4 - 10.45 51.08 1958 96.0 159.6 9.5 265.1 - 10.45 51.08 1959 0.0 29.6 0.0 29.6 - 10.45 51.08 1960 74.7 82.5 3.4 160.6 - 10.45 51.08 1961 78.1 144.6 10.5 233.2 - 10.45 51.08 1962 3.0 74.0 2.7 79.7 - 10.45 51.08 1963 8.4 66.4 4.0 78.8 - 10.45 51.08 1964 27.6 70.0 1.1 98.7 - 10.45 51.08 1965 30.4 104.3 5.1 139.8 - 10.45 51.08 1966 89.5 153.6 8.6 251.7 - 10.45 51.08 1967 0.2 117.3 0.2 117.8 - 10.45 51.08 1968 26.8 96.2 1.8 124.9 - 10.45 51.08 1969 49.2 114.7 10.8 174.7 - 10.45 51.08 1970 40.1 159.1 5.7 204.9 - 10.45 51.08 1971 13.2 52.9 0.2 66.3 - 10.45 51.08 1972 46.6 66.5 10.2 123.3 - 10.45 51.08 1973 11.1 86.7 2.0 99.8 - 10.45 51.08 1974 26.2 149.2 1.8 177.1 - 10.45 51.08 1975 0.0 58.2 0.0 58.2 - 10.45 51.08 1976 8.9 59.3 2.2 70.3 - 10.45 51.08 1977 77.9 135.4 8.2 221.6 - 10.45 51.08 1978 2.7 84.1 0.5 87.3 - 10.45 51.08 1979 57.7 122.5 4.1 184.3 - 10.45 51.08 1980 4.2 99.5 0.5 104.1 - 10.45 51.08 1981 68.8 141.2 8.0 218.0 - 10.45 51.08 1982 11.8 50.0 1.1 62.8 - 10.45 51.08 1983 48.1 60.4 5.2 113.8 - 10.45 51.08 1984 35.7 145.2 15.5 196.5 - 10.45 51.08 1985 2.8 43.7 0.6 47.1 - 10.45 51.08 1986 40.9 116.7 7.1 164.7 - 10.45 51.08 1987 97.3 183.1 13.8 294.1 - 10.45 51.08 1988 29.8 105.7 4.7 140.2 - 10.45 51.08 1989 17.2 66.2 1.5 84.8 - 10.45 51.08 1990 6.2 69.0 2.1 77.3 - 10.45 51.08 1991 12.4 35.2 1.3 48.9 - 10.45 51.08 1992 75.2 76.7 5.5 157.4 - 10.45 51.08 1993 46.5 122.8 4.6 173.9 - 10.45 51.08 1994 54.8 136.3 3.0 194.1 - 10.45 51.08 1995 40.8 132.5 6.8 180.0 - 10.45 51.08 1996 39.9 135.4 3.4 178.6 - 10.45 51.08 1997 28.4 112.1 8.0 148.5 - 10.45 51.08 1998 38.8 141.7 4.1 184.7 - 10.45 51.08 1999 19.4 92.9 3.7 116.0 - 10.45 51.08 2000 10.5 112.6 2.3 125.3 - 10.45 51.08 2001 23.8 144.8 6.6 175.2 - 10.45 51.08 2002 128.5 207.3 7.7 343.5 - 10.45 51.08 2003 6.6 42.8 1.8 51.3 - 10.45 51.08 2004 59.4 65.1 7.8 132.3 - 10.45 51.08 2005 5.7 81.6 2.0 89.3 - 10.45 51.08 2006 19.3 77.1 3.6 99.9 - 10.45 51.08 2007 142.7 144.5 7.4 294.6 - 10.45 51.08 2008 14.1 91.1 1.2 106.4 - 10.45 51.08 2009 43.6 143.0 2.7 189.3 - 10.45 51.08 2010 119.1 133.4 13.6 266.1 - 10.45 51.08 2011 63.5 50.2 1.0 114.7 - 10.45 51.08 2012 21.4 90.6 2.4 114.4 diff --git a/rLPJGUESS/inst/extdata/outputsForTests/run_estinterval/outDirectory/speciesheight.out b/rLPJGUESS/inst/extdata/outputsForTests/run_estinterval/outDirectory/speciesheight.out deleted file mode 100644 index 092eaa3..0000000 --- a/rLPJGUESS/inst/extdata/outputsForTests/run_estinterval/outDirectory/speciesheight.out +++ /dev/null @@ -1,63 +0,0 @@ - Lon Lat Year Abi_alb BES Bet_pen Bet_pub Car_bet Cor_ave Fag_syl Fra_exc Jun_oxy MRS Pic_abi Pic_sit Pin_syl Pin_hal Pop_tre Que_coc Que_ile Que_pub Que_rob Til_cor Ulm_gla C3_gr C4_gr - 10.45 51.08 1951 0.00 0.81 6.65 11.53 8.33 0.00 6.88 10.81 0.00 0.00 6.21 5.68 0.00 0.00 0.00 0.00 0.00 9.87 7.31 8.74 9.95 0.00 0.00 - 10.45 51.08 1952 0.00 0.81 7.16 11.63 8.38 0.00 6.92 10.98 0.00 0.00 6.21 5.68 0.00 0.00 0.00 0.00 0.00 9.93 7.86 8.78 10.02 0.00 0.00 - 10.45 51.08 1953 0.00 0.82 8.05 11.78 8.47 0.00 7.01 11.85 0.00 0.00 6.25 5.70 0.00 0.00 0.00 0.00 0.00 10.03 7.94 8.88 10.49 0.00 0.00 - 10.45 51.08 1954 0.00 0.83 8.08 11.89 8.53 0.00 7.05 11.94 0.00 0.00 6.29 5.73 0.00 0.00 0.00 0.00 0.00 10.09 8.77 8.93 10.56 0.00 0.00 - 10.45 51.08 1955 0.00 0.83 8.10 11.99 8.57 0.00 7.09 12.23 0.00 0.00 6.29 5.73 0.00 0.00 0.00 0.00 0.00 10.14 8.81 8.97 11.03 0.00 0.00 - 10.45 51.08 1956 0.00 0.84 8.14 12.09 8.62 0.00 7.14 12.32 0.00 0.00 6.33 5.75 0.00 0.00 0.00 0.00 0.00 10.20 8.86 9.03 11.11 0.00 0.00 - 10.45 51.08 1957 0.00 0.85 8.17 12.19 8.68 0.00 7.19 12.42 0.00 0.00 6.34 5.76 0.00 0.00 0.00 0.00 0.00 10.25 8.91 9.09 11.25 0.00 0.00 - 10.45 51.08 1958 0.00 0.85 8.20 12.27 9.38 0.00 7.23 12.51 0.00 0.00 6.34 5.76 0.00 0.00 0.00 0.00 0.00 10.30 8.95 9.13 11.32 0.00 0.00 - 10.45 51.08 1959 0.00 0.86 9.93 12.38 9.45 0.00 7.30 12.63 0.00 0.00 6.36 5.76 0.00 0.00 0.00 0.00 0.00 10.37 9.01 9.19 11.41 0.00 0.00 - 10.45 51.08 1960 0.00 0.86 9.96 12.46 9.50 0.00 7.34 13.68 0.00 0.00 6.39 5.78 3.83 0.00 0.00 0.00 0.00 10.41 8.58 9.24 11.47 0.00 0.00 - 10.45 51.08 1961 0.00 0.87 9.99 12.54 9.56 0.00 7.40 13.78 0.00 0.00 6.40 5.79 3.84 0.00 0.00 0.00 0.00 10.46 8.63 9.29 11.54 0.00 0.00 - 10.45 51.08 1962 0.00 0.87 10.02 0.00 9.61 0.00 7.45 13.87 0.00 0.00 6.43 5.80 3.85 0.00 0.00 0.00 0.00 10.51 7.74 10.84 11.60 0.00 0.00 - 10.45 51.08 1963 0.00 0.88 10.04 0.00 9.66 0.00 7.49 15.24 0.00 0.00 6.44 5.80 3.86 0.00 0.00 0.00 0.00 10.54 7.77 10.88 11.66 0.00 0.00 - 10.45 51.08 1964 0.00 0.00 10.07 0.00 9.72 0.00 7.74 15.35 0.00 0.00 6.46 5.81 3.87 0.00 0.00 0.00 0.00 10.60 7.81 10.93 11.73 0.00 0.00 - 10.45 51.08 1965 0.00 0.00 10.10 0.00 9.77 0.00 7.80 15.44 0.00 0.00 6.50 5.83 3.88 0.00 0.00 0.00 0.00 10.64 7.84 10.99 11.79 0.00 0.00 - 10.45 51.08 1966 0.00 0.00 10.13 0.00 9.83 0.00 7.87 15.55 0.00 0.00 6.51 5.84 3.89 0.00 0.00 0.00 0.00 10.69 7.88 11.04 11.86 0.00 0.00 - 10.45 51.08 1967 0.00 0.00 10.15 0.00 9.87 0.00 7.91 15.63 0.00 0.00 6.55 5.86 3.90 0.00 0.00 0.00 0.00 10.73 7.90 11.08 11.91 0.00 0.00 - 10.45 51.08 1968 0.00 0.00 10.17 0.00 9.92 0.00 7.96 15.72 0.00 0.00 6.57 5.86 3.91 0.00 0.00 0.00 0.00 10.77 7.94 11.12 11.96 0.00 0.00 - 10.45 51.08 1969 0.00 0.00 10.19 0.00 9.96 0.00 8.00 15.79 0.00 0.00 6.57 5.86 3.92 0.00 0.00 0.00 0.00 10.79 7.96 11.15 12.01 0.00 0.00 - 10.45 51.08 1970 0.00 0.00 10.20 0.00 9.99 0.00 8.03 15.86 0.00 0.00 6.58 5.87 3.93 0.00 0.00 0.00 0.00 10.82 7.97 11.18 12.15 0.00 0.00 - 10.45 51.08 1971 0.00 0.00 0.00 0.00 10.03 0.00 8.08 15.94 0.00 0.00 6.61 5.88 3.94 0.00 0.00 0.00 0.00 10.85 8.00 11.22 12.20 0.00 0.00 - 10.45 51.08 1972 0.00 0.00 0.00 0.00 11.07 0.00 8.13 16.02 0.00 0.00 6.65 5.90 3.95 0.00 0.00 0.00 0.00 10.88 8.03 11.25 12.89 0.00 0.00 - 10.45 51.08 1973 0.00 0.00 0.00 0.00 11.11 0.00 8.17 16.08 0.00 0.00 6.69 5.92 3.97 0.00 0.00 0.00 0.00 10.91 8.05 11.28 12.93 0.00 0.00 - 10.45 51.08 1974 0.00 0.00 0.00 0.00 11.16 0.00 8.24 16.17 0.00 0.00 6.74 5.94 4.00 0.00 0.00 0.00 0.00 10.96 8.09 11.33 12.99 0.00 0.00 - 10.45 51.08 1975 0.00 0.00 0.00 0.00 11.20 0.00 8.29 16.23 0.00 0.00 6.77 5.95 4.00 0.00 0.00 0.00 0.00 10.99 8.12 11.36 13.04 0.00 0.00 - 10.45 51.08 1976 0.00 0.00 0.00 0.00 11.24 0.00 8.33 14.80 0.00 0.00 6.80 5.96 4.03 0.00 0.00 0.00 0.00 11.01 8.13 11.38 13.08 0.00 0.00 - 10.45 51.08 1977 0.00 0.00 0.00 0.00 11.30 0.00 8.42 14.88 0.00 0.00 6.85 5.99 4.04 0.00 0.00 0.00 0.00 11.06 8.18 11.43 13.15 0.00 0.00 - 10.45 51.08 1978 0.00 0.00 0.00 0.00 11.36 0.00 8.50 14.96 0.00 0.00 4.62 6.01 4.07 0.00 0.00 0.00 0.00 11.11 8.23 11.48 13.21 0.00 0.00 - 10.45 51.08 1979 0.00 0.00 0.00 0.00 11.42 0.00 8.58 15.03 0.00 0.00 4.67 6.04 4.10 0.00 0.00 0.00 0.00 11.16 8.27 11.54 13.27 0.00 0.00 - 10.45 51.08 1980 0.00 0.00 0.00 0.00 11.47 0.00 8.66 15.09 0.00 0.00 4.74 6.07 4.14 0.00 0.00 0.00 0.00 11.21 8.32 11.58 13.33 0.00 0.00 - 10.45 51.08 1981 0.00 0.00 0.00 0.00 11.54 0.00 8.77 15.18 0.00 0.00 4.78 6.09 4.16 0.00 0.00 0.00 0.00 11.27 5.48 11.65 13.40 0.00 0.00 - 10.45 51.08 1982 0.00 0.00 0.00 0.00 11.59 0.00 8.85 15.24 0.00 0.00 4.85 6.12 4.19 0.00 0.00 0.00 0.00 11.31 5.51 11.69 13.45 0.00 0.00 - 10.45 51.08 1983 0.00 0.00 0.00 0.00 11.65 0.00 8.94 15.32 0.00 0.00 4.89 6.14 4.21 0.00 0.00 0.00 0.00 11.36 5.56 11.74 13.52 0.00 0.00 - 10.45 51.08 1984 0.00 0.00 0.00 0.00 11.70 0.00 9.01 15.38 0.00 0.00 4.94 6.17 4.25 0.00 0.00 0.00 0.00 11.40 5.61 11.78 13.57 0.00 0.00 - 10.45 51.08 1985 0.00 0.00 0.00 0.00 11.77 0.00 9.12 15.46 0.00 0.00 5.00 6.19 4.27 0.00 0.00 0.00 0.00 11.45 5.66 11.84 13.64 0.00 0.00 - 10.45 51.08 1986 0.00 0.00 0.00 0.00 11.82 0.00 9.20 15.52 0.00 0.00 5.05 6.22 4.30 0.00 0.00 0.00 0.00 11.49 5.70 11.88 13.69 0.00 0.00 - 10.45 51.08 1987 0.00 0.00 0.00 0.00 11.88 0.00 9.29 15.59 0.00 0.00 5.10 6.24 4.33 0.00 0.00 0.00 0.00 11.54 5.75 11.93 13.75 0.00 0.00 - 10.45 51.08 1988 0.00 0.00 0.00 0.00 11.95 0.00 9.41 15.67 0.00 0.00 5.17 6.27 4.37 0.00 0.00 0.00 0.00 11.59 5.82 11.99 13.82 0.00 0.00 - 10.45 51.08 1989 0.00 0.00 0.00 0.00 12.03 0.00 9.54 15.76 0.00 0.00 5.26 6.31 4.41 0.00 0.00 0.00 0.00 11.66 5.90 12.05 13.90 0.00 0.00 - 10.45 51.08 1990 0.00 0.00 0.00 0.00 12.12 0.00 9.70 15.87 0.00 0.00 5.34 6.35 4.45 0.00 0.00 0.00 0.00 11.73 5.98 12.13 13.99 0.00 0.00 - 10.45 51.08 1991 0.00 0.00 0.00 0.00 12.18 0.00 9.80 15.94 0.00 0.00 5.39 6.37 4.48 0.00 0.00 0.00 0.00 11.78 6.04 12.18 14.05 0.00 0.00 - 10.45 51.08 1992 0.00 0.00 0.00 0.00 12.22 0.00 9.87 15.99 0.00 0.00 5.46 6.40 4.51 0.00 0.00 0.00 0.00 11.82 6.08 12.22 14.09 0.00 0.00 - 10.45 51.08 1993 0.00 0.00 0.00 0.00 12.29 0.00 9.98 16.07 0.00 0.00 5.50 6.42 4.54 0.00 0.00 0.00 0.00 11.87 6.15 12.27 14.16 0.00 0.00 - 10.45 51.08 1994 0.00 0.00 0.00 0.00 12.34 0.00 10.06 16.13 0.00 0.00 5.81 6.44 4.56 0.00 0.00 0.00 0.00 11.90 6.20 12.31 14.21 0.00 0.00 - 10.45 51.08 1995 0.00 0.00 0.00 0.00 12.38 0.00 10.13 16.18 0.00 0.00 5.85 6.45 4.58 0.00 0.00 0.00 0.00 11.93 6.23 12.34 14.25 0.00 0.00 - 10.45 51.08 1996 0.00 0.00 0.00 0.00 12.43 0.00 9.01 16.23 0.00 0.00 5.88 6.46 4.60 0.00 0.00 0.00 0.00 11.97 6.27 12.90 14.29 0.00 0.00 - 10.45 51.08 1997 0.00 0.00 0.00 0.00 12.49 0.00 9.12 16.30 0.00 0.00 5.95 6.49 4.64 0.00 0.00 0.00 0.00 12.01 6.33 12.96 14.35 0.00 0.00 - 10.45 51.08 1998 0.00 0.00 0.00 0.00 12.55 0.00 9.24 16.37 0.00 0.00 6.00 6.51 4.66 0.00 0.00 0.00 0.00 12.06 6.40 13.01 14.41 0.00 0.00 - 10.45 51.08 1999 0.00 0.00 0.00 0.00 12.62 0.00 9.36 16.45 0.00 0.00 6.07 6.54 4.70 0.00 0.00 0.00 0.00 12.12 6.48 13.07 14.48 0.00 0.00 - 10.45 51.08 2000 0.00 0.00 0.00 0.00 12.68 0.00 9.46 16.51 0.00 0.00 6.13 6.56 4.72 0.00 0.00 0.00 0.00 12.15 6.54 13.12 14.53 0.00 0.00 - 10.45 51.08 2001 0.00 0.00 0.00 0.00 9.22 0.00 9.56 16.58 0.00 0.00 6.17 6.58 4.75 0.00 0.00 0.00 0.00 12.20 6.60 13.17 14.59 0.00 0.00 - 10.45 51.08 2002 0.00 0.00 0.00 0.00 9.28 0.00 9.68 16.64 0.00 0.00 6.23 6.61 4.77 0.00 0.00 0.00 0.00 12.25 6.68 13.23 14.65 0.00 0.00 - 10.45 51.08 2003 0.00 0.00 0.00 0.00 9.33 0.00 9.80 16.71 0.00 0.00 6.30 4.96 4.81 0.00 0.00 0.00 0.00 12.29 6.75 13.28 14.70 0.00 0.00 - 10.45 51.08 2004 0.00 0.00 0.00 0.00 9.42 0.00 9.99 16.81 0.00 0.00 6.39 4.99 4.85 0.00 0.00 0.00 0.00 12.37 6.87 13.37 14.79 0.00 0.00 - 10.45 51.08 2005 0.00 0.00 0.00 0.00 9.49 0.00 10.13 16.90 0.00 0.00 6.45 5.02 4.88 0.00 0.00 0.00 0.00 12.43 6.96 13.43 14.87 0.00 0.00 - 10.45 51.08 2006 0.00 0.00 0.00 0.00 10.43 0.00 10.21 16.96 0.00 0.00 6.49 5.03 4.90 0.00 0.00 0.00 0.00 12.46 7.01 13.47 14.91 0.00 0.00 - 10.45 51.08 2007 0.00 0.00 0.00 0.00 10.49 0.00 10.34 17.05 0.00 0.00 5.92 5.08 4.96 0.00 0.00 0.00 0.00 12.52 7.11 13.53 14.99 0.00 0.00 - 10.45 51.08 2008 0.00 0.00 0.00 0.00 10.55 0.00 10.46 17.12 0.00 0.00 5.99 5.10 4.99 0.00 0.00 0.00 0.00 12.57 7.19 13.59 15.30 0.00 0.00 - 10.45 51.08 2009 0.00 0.00 0.00 0.00 10.61 0.00 10.60 17.19 0.00 0.00 6.06 5.13 5.02 0.00 0.00 0.00 0.00 12.63 7.28 13.66 15.37 0.00 0.00 - 10.45 51.08 2010 0.00 0.00 0.00 0.00 10.64 0.00 10.69 17.25 0.00 0.00 6.10 5.14 5.04 0.00 0.00 0.00 0.00 12.66 7.33 13.69 16.77 0.00 0.00 - 10.45 51.08 2011 0.00 0.00 0.00 0.00 10.72 0.00 10.45 17.34 0.00 0.00 6.19 5.18 5.08 0.00 0.00 0.00 0.00 12.73 7.44 13.78 16.85 0.00 0.00 - 10.45 51.08 2012 0.00 0.00 0.00 0.00 10.78 0.00 10.58 17.41 0.00 0.00 6.27 5.21 5.12 0.00 0.00 0.00 0.00 12.78 7.53 13.84 16.91 0.00 0.00 diff --git a/rLPJGUESS/inst/extdata/outputsForTests/run_estinterval/outDirectory/vmaxnlim.out b/rLPJGUESS/inst/extdata/outputsForTests/run_estinterval/outDirectory/vmaxnlim.out deleted file mode 100644 index fc1293e..0000000 --- a/rLPJGUESS/inst/extdata/outputsForTests/run_estinterval/outDirectory/vmaxnlim.out +++ /dev/null @@ -1,63 +0,0 @@ - Lon Lat YearAbi_alb BESBet_penBet_pubCar_betCor_aveFag_sylFra_excJun_oxy MRSPic_abiPic_sitPin_sylPin_halPop_treQue_cocQue_ileQue_pubQue_robTil_corUlm_gla C3_gr C4_gr Total - 10.45 51.08 1951 0.00 1.00 1.00 1.00 1.00 0.00 1.00 1.00 0.00 0.00 1.00 1.00 1.00 0.00 0.00 0.00 0.00 1.00 1.00 1.00 1.00 0.00 0.00 1.00 - 10.45 51.08 1952 0.00 1.00 1.00 1.00 1.00 0.00 1.00 1.00 0.00 0.00 1.00 1.00 1.00 0.00 0.00 0.00 0.00 1.00 1.00 1.00 1.00 0.00 0.00 1.00 - 10.45 51.08 1953 0.00 1.00 1.00 1.00 1.00 0.00 1.00 1.00 0.00 0.00 1.00 1.00 1.00 0.00 0.00 0.00 0.00 1.00 1.00 1.00 1.00 0.00 0.00 1.00 - 10.45 51.08 1954 0.00 1.00 1.00 1.00 1.00 0.00 1.00 1.00 0.00 0.00 1.00 1.00 1.00 0.00 0.00 0.00 0.00 1.00 1.00 1.00 1.00 0.00 0.00 1.00 - 10.45 51.08 1955 0.00 1.00 1.00 1.00 1.00 0.00 1.00 1.00 0.00 0.00 1.00 1.00 1.00 0.00 0.00 0.00 0.00 1.00 1.00 1.00 1.00 0.00 0.00 1.00 - 10.45 51.08 1956 0.00 1.00 1.00 1.00 1.00 0.00 1.00 1.00 0.00 0.00 1.00 1.00 1.00 0.00 0.00 0.00 0.00 1.00 1.00 1.00 1.00 0.00 0.00 1.00 - 10.45 51.08 1957 0.00 1.00 1.00 1.00 1.00 0.00 1.00 1.00 0.00 0.00 1.00 1.00 1.00 0.00 0.00 0.00 0.00 1.00 1.00 1.00 1.00 0.00 0.00 1.00 - 10.45 51.08 1958 0.00 1.00 1.00 1.00 1.00 0.00 1.00 1.00 0.00 0.00 1.00 1.00 1.00 0.00 0.00 0.00 0.00 1.00 1.00 1.00 1.00 0.00 0.00 1.00 - 10.45 51.08 1959 0.00 1.00 1.00 1.00 1.00 0.00 1.00 1.00 0.00 0.00 1.00 1.00 1.00 0.00 0.00 0.00 0.00 1.00 1.00 1.00 1.00 0.00 0.00 1.00 - 10.45 51.08 1960 0.00 1.00 1.00 1.00 1.00 0.00 1.00 1.00 0.00 0.00 1.00 1.00 1.00 0.00 0.00 0.00 0.00 1.00 1.00 1.00 1.00 0.00 0.00 1.00 - 10.45 51.08 1961 0.00 1.00 1.00 1.00 1.00 0.00 1.00 1.00 0.00 0.00 1.00 1.00 1.00 0.00 0.00 0.00 0.00 1.00 1.00 1.00 1.00 0.00 0.00 1.00 - 10.45 51.08 1962 0.00 1.00 1.00 0.00 1.00 0.00 1.00 1.00 0.00 0.00 1.00 1.00 1.00 0.00 0.00 0.00 0.00 1.00 1.00 1.00 1.00 0.00 0.00 1.00 - 10.45 51.08 1963 0.00 1.00 1.00 0.00 1.00 0.00 1.00 1.00 0.00 0.00 1.00 1.00 1.00 0.00 0.00 0.00 0.00 1.00 1.00 1.00 1.00 0.00 0.00 1.00 - 10.45 51.08 1964 0.00 0.00 1.00 0.00 1.00 0.00 1.00 1.00 0.00 0.00 1.00 1.00 1.00 0.00 0.00 0.00 0.00 1.00 1.00 1.00 1.00 0.00 0.00 1.00 - 10.45 51.08 1965 0.00 0.00 1.00 0.00 1.00 0.00 1.00 1.00 0.00 0.00 1.00 1.00 1.00 0.00 0.00 0.00 0.00 1.00 1.00 1.00 1.00 0.00 0.00 1.00 - 10.45 51.08 1966 0.00 0.00 1.00 0.00 1.00 0.00 1.00 1.00 0.00 0.00 1.00 1.00 1.00 0.00 0.00 0.00 0.00 1.00 1.00 1.00 1.00 0.00 0.00 1.00 - 10.45 51.08 1967 0.00 0.00 1.00 0.00 1.00 0.00 1.00 1.00 0.00 0.00 1.00 1.00 1.00 0.00 0.00 0.00 0.00 1.00 1.00 1.00 1.00 0.00 0.00 1.00 - 10.45 51.08 1968 0.00 0.00 1.00 0.00 1.00 0.00 1.00 1.00 0.00 0.00 1.00 1.00 1.00 0.00 0.00 0.00 0.00 1.00 1.00 1.00 1.00 0.00 0.00 1.00 - 10.45 51.08 1969 0.00 0.00 1.00 0.00 1.00 0.00 1.00 1.00 0.00 0.00 1.00 1.00 1.00 0.00 0.00 0.00 0.00 1.00 1.00 1.00 1.00 0.00 0.00 1.00 - 10.45 51.08 1970 0.00 0.00 1.00 0.00 1.00 0.00 1.00 1.00 0.00 0.00 1.00 1.00 1.00 0.00 0.00 0.00 0.00 1.00 1.00 1.00 1.00 0.00 0.00 1.00 - 10.45 51.08 1971 0.00 0.00 0.00 0.00 1.00 0.00 1.00 1.00 0.00 0.00 1.00 1.00 1.00 0.00 0.00 0.00 0.00 1.00 1.00 1.00 1.00 0.00 0.00 1.00 - 10.45 51.08 1972 0.00 0.00 0.00 0.00 1.00 0.00 1.00 1.00 0.00 0.00 1.00 1.00 1.00 0.00 0.00 0.00 0.00 1.00 1.00 1.00 1.00 0.00 0.00 1.00 - 10.45 51.08 1973 0.00 0.00 0.00 0.00 1.00 0.00 1.00 1.00 0.00 0.00 1.00 1.00 1.00 0.00 0.00 0.00 0.00 1.00 1.00 1.00 1.00 0.00 0.00 1.00 - 10.45 51.08 1974 0.00 0.00 0.00 0.00 1.00 0.00 1.00 1.00 0.00 0.00 1.00 1.00 1.00 0.00 0.00 0.00 0.00 1.00 1.00 1.00 1.00 0.00 0.00 1.00 - 10.45 51.08 1975 0.00 0.00 0.00 0.00 1.00 0.00 1.00 1.00 0.00 0.00 1.00 1.00 1.00 0.00 0.00 0.00 0.00 1.00 1.00 1.00 1.00 0.00 0.00 1.00 - 10.45 51.08 1976 0.00 0.00 0.00 0.00 1.00 0.00 1.00 1.00 0.00 0.00 1.00 1.00 1.00 0.00 0.00 0.00 0.00 1.00 1.00 1.00 1.00 0.00 0.00 1.00 - 10.45 51.08 1977 0.00 0.00 0.00 0.00 1.00 0.00 1.00 1.00 0.00 0.00 1.00 1.00 1.00 0.00 0.00 0.00 0.00 1.00 1.00 1.00 1.00 0.00 0.00 1.00 - 10.45 51.08 1978 0.00 0.00 0.00 0.00 1.00 0.00 1.00 1.00 0.00 0.00 1.00 1.00 1.00 0.00 0.00 0.00 0.00 1.00 1.00 1.00 1.00 0.00 0.00 1.00 - 10.45 51.08 1979 0.00 0.00 0.00 0.00 1.00 0.00 1.00 1.00 0.00 0.00 1.00 1.00 1.00 0.00 0.00 0.00 0.00 1.00 1.00 1.00 1.00 0.00 0.00 1.00 - 10.45 51.08 1980 0.00 0.00 0.00 0.00 1.00 0.00 1.00 1.00 0.00 0.00 1.00 1.00 1.00 0.00 0.00 0.00 0.00 1.00 1.00 1.00 1.00 0.00 0.00 1.00 - 10.45 51.08 1981 0.00 0.00 0.00 0.00 1.00 0.00 1.00 1.00 0.00 0.00 1.00 1.00 1.00 0.00 0.00 0.00 0.00 1.00 1.00 1.00 1.00 0.00 0.00 1.00 - 10.45 51.08 1982 0.00 0.00 0.00 0.00 1.00 0.00 1.00 1.00 0.00 0.00 1.00 1.00 1.00 0.00 0.00 0.00 0.00 1.00 1.00 1.00 1.00 0.00 0.00 1.00 - 10.45 51.08 1983 0.00 0.00 0.00 0.00 1.00 0.00 1.00 1.00 0.00 0.00 1.00 1.00 1.00 0.00 0.00 0.00 0.00 1.00 1.00 1.00 1.00 0.00 0.00 1.00 - 10.45 51.08 1984 0.00 0.00 0.00 0.00 1.00 0.00 1.00 1.00 0.00 0.00 1.00 1.00 1.00 0.00 0.00 0.00 0.00 1.00 1.00 1.00 1.00 0.00 0.00 1.00 - 10.45 51.08 1985 0.00 0.00 0.00 0.00 1.00 0.00 1.00 1.00 0.00 0.00 1.00 1.00 1.00 0.00 0.00 0.00 0.00 1.00 1.00 1.00 1.00 0.00 0.00 1.00 - 10.45 51.08 1986 0.00 0.00 0.00 0.00 1.00 0.00 1.00 1.00 0.00 0.00 1.00 1.00 1.00 0.00 0.00 0.00 0.00 1.00 1.00 1.00 1.00 0.00 0.00 1.00 - 10.45 51.08 1987 0.00 0.00 0.00 0.00 1.00 0.00 1.00 1.00 0.00 0.00 1.00 1.00 1.00 0.00 0.00 0.00 0.00 1.00 1.00 1.00 1.00 0.00 0.00 1.00 - 10.45 51.08 1988 0.00 0.00 0.00 0.00 1.00 0.00 1.00 1.00 0.00 0.00 1.00 1.00 1.00 0.00 0.00 0.00 0.00 1.00 1.00 1.00 1.00 0.00 0.00 1.00 - 10.45 51.08 1989 0.00 0.00 0.00 0.00 1.00 0.00 1.00 1.00 0.00 0.00 1.00 1.00 1.00 0.00 0.00 0.00 0.00 1.00 1.00 1.00 1.00 0.00 0.00 1.00 - 10.45 51.08 1990 0.00 0.00 0.00 0.00 1.00 0.00 1.00 1.00 0.00 0.00 1.00 1.00 1.00 0.00 0.00 0.00 0.00 1.00 1.00 1.00 1.00 0.00 0.00 1.00 - 10.45 51.08 1991 0.00 0.00 0.00 0.00 1.00 0.00 1.00 1.00 0.00 0.00 1.00 1.00 1.00 0.00 0.00 0.00 0.00 1.00 1.00 1.00 1.00 0.00 0.00 1.00 - 10.45 51.08 1992 0.00 0.00 0.00 0.00 1.00 0.00 1.00 1.00 0.00 0.00 1.00 1.00 1.00 0.00 0.00 0.00 0.00 1.00 1.00 1.00 1.00 0.00 0.00 1.00 - 10.45 51.08 1993 0.00 0.00 0.00 0.00 1.00 0.00 1.00 1.00 0.00 0.00 1.00 1.00 1.00 0.00 0.00 0.00 0.00 1.00 1.00 1.00 1.00 0.00 0.00 1.00 - 10.45 51.08 1994 0.00 0.00 0.00 0.00 1.00 0.00 1.00 1.00 0.00 0.00 1.00 1.00 1.00 0.00 0.00 0.00 0.00 1.00 1.00 1.00 1.00 0.00 0.00 1.00 - 10.45 51.08 1995 0.00 0.00 0.00 0.00 1.00 0.00 1.00 1.00 0.00 0.00 1.00 1.00 1.00 0.00 0.00 0.00 0.00 1.00 1.00 1.00 1.00 0.00 0.00 1.00 - 10.45 51.08 1996 0.00 0.00 0.00 0.00 1.00 0.00 1.00 1.00 0.00 0.00 1.00 1.00 1.00 0.00 0.00 0.00 0.00 1.00 1.00 1.00 1.00 0.00 0.00 1.00 - 10.45 51.08 1997 0.00 0.00 0.00 0.00 1.00 0.00 1.00 1.00 0.00 0.00 1.00 1.00 1.00 0.00 0.00 0.00 0.00 1.00 1.00 1.00 1.00 0.00 0.00 1.00 - 10.45 51.08 1998 0.00 0.00 0.00 0.00 1.00 0.00 1.00 1.00 0.00 0.00 1.00 1.00 1.00 0.00 0.00 0.00 0.00 1.00 1.00 1.00 1.00 0.00 0.00 1.00 - 10.45 51.08 1999 0.00 0.00 0.00 0.00 1.00 0.00 1.00 1.00 0.00 0.00 1.00 1.00 1.00 0.00 0.00 0.00 0.00 1.00 1.00 1.00 1.00 0.00 0.00 1.00 - 10.45 51.08 2000 0.00 0.00 0.00 0.00 1.00 0.00 1.00 1.00 0.00 0.00 1.00 1.00 1.00 0.00 0.00 0.00 0.00 1.00 1.00 1.00 1.00 0.00 0.00 1.00 - 10.45 51.08 2001 0.00 0.00 0.00 0.00 1.00 0.00 1.00 1.00 0.00 0.00 1.00 1.00 1.00 0.00 0.00 0.00 0.00 1.00 1.00 1.00 1.00 0.00 0.00 1.00 - 10.45 51.08 2002 0.00 0.00 0.00 0.00 1.00 0.00 1.00 1.00 0.00 0.00 1.00 1.00 1.00 0.00 0.00 0.00 0.00 1.00 1.00 1.00 1.00 0.00 0.00 1.00 - 10.45 51.08 2003 0.00 0.00 0.00 0.00 1.00 0.00 1.00 1.00 0.00 0.00 1.00 1.00 1.00 0.00 0.00 0.00 0.00 1.00 1.00 1.00 1.00 0.00 0.00 1.00 - 10.45 51.08 2004 0.00 0.00 0.00 0.00 1.00 0.00 1.00 1.00 0.00 0.00 1.00 1.00 1.00 0.00 0.00 0.00 0.00 1.00 1.00 1.00 1.00 0.00 0.00 1.00 - 10.45 51.08 2005 0.00 0.00 0.00 0.00 1.00 0.00 1.00 1.00 0.00 0.00 1.00 1.00 1.00 0.00 0.00 0.00 0.00 1.00 1.00 1.00 1.00 0.00 0.00 1.00 - 10.45 51.08 2006 0.00 0.00 0.00 0.00 1.00 0.00 1.00 1.00 0.00 0.00 1.00 1.00 1.00 0.00 0.00 0.00 0.00 1.00 1.00 1.00 1.00 0.00 0.00 1.00 - 10.45 51.08 2007 0.00 0.00 0.00 0.00 1.00 0.00 1.00 1.00 0.00 0.00 1.00 1.00 1.00 0.00 0.00 0.00 0.00 1.00 1.00 1.00 1.00 0.00 0.00 1.00 - 10.45 51.08 2008 0.00 0.00 0.00 0.00 1.00 0.00 1.00 1.00 0.00 0.00 1.00 1.00 1.00 0.00 0.00 0.00 0.00 1.00 1.00 1.00 1.00 0.00 0.00 1.00 - 10.45 51.08 2009 0.00 0.00 0.00 0.00 1.00 0.00 1.00 1.00 0.00 0.00 1.00 1.00 1.00 0.00 0.00 0.00 0.00 1.00 1.00 1.00 1.00 0.00 0.00 1.00 - 10.45 51.08 2010 0.00 0.00 0.00 0.00 1.00 0.00 1.00 1.00 0.00 0.00 1.00 1.00 1.00 0.00 0.00 0.00 0.00 1.00 1.00 1.00 1.00 0.00 0.00 1.00 - 10.45 51.08 2011 0.00 0.00 0.00 0.00 1.00 0.00 1.00 1.00 0.00 0.00 1.00 1.00 1.00 0.00 0.00 0.00 0.00 1.00 1.00 1.00 1.00 0.00 0.00 1.00 - 10.45 51.08 2012 0.00 0.00 0.00 0.00 1.00 0.00 1.00 1.00 0.00 0.00 1.00 1.00 1.00 0.00 0.00 0.00 0.00 1.00 1.00 1.00 1.00 0.00 0.00 1.00 diff --git a/rLPJGUESS/inst/extdata/outputsForTests/run_ifdisturb/europe.ins b/rLPJGUESS/inst/extdata/outputsForTests/run_ifdisturb/europe.ins deleted file mode 100644 index 65641b8..0000000 --- a/rLPJGUESS/inst/extdata/outputsForTests/run_ifdisturb/europe.ins +++ /dev/null @@ -1,1103 +0,0 @@ -!/////////////////////////////////////////////////////////////////////////////////////// -!// LPJ-GUESS INSTRUCTION SCRIPT FOR COHORT/INDIVIDUAL MODE -!// European Species -!// -!// LPJ-GUESS 3.0 -!// -!// Parameter differences with Thomas Hickler's paper: -!// -!// Hickler, T., Vohland, K., Feehan, J., Miller, P., Fronzek, S., Giesecke, T., Kuehn, I., Carter, T., Smith, B. & -!// Sykes, M. Projecting tree species-based climate-driven changes in European potential natural vegetation -!// with a generalized dynamic vegetation model. In press, Global Ecology & Biogeography. -!// -!// are commented with ! THdiff -!/////////////////////////////////////////////////////////////////////////////////////// - - -!/////////////////////////////////////////////////////////////////////////////////////// -! Output files -! - -! outputdirectory is mandatory. Should be "./" for parallel runs. -outputdirectory "/home/ramiro/Github/TestCode/LPJrunTest/runDirectory/outDirectory/" - -! Prefined yearly output -! These files may be outcommented if their output is not required. -file_cmass "cmass.out" -file_anpp "anpp.out" -file_agpp "agpp.out" -file_fpc "fpc.out" -file_aaet "aaet.out" -file_lai "lai.out" -file_cflux "cflux.out" -file_dens "dens.out" -file_runoff "runoff.out" -file_cpool "cpool.out" -file_clitter "clitter.out" -file_firert "firert.out" -file_aiso "aiso.out" -file_amon "amon.out" -file_speciesheights "speciesheight.out" - -file_nmass "nmass.out" -file_cton_leaf "cton_leaf.out" -file_ngases "ngases.out" -file_nsources "nsources.out" -file_npool "npool.out" -file_nlitter "nlitter.out" -file_nuptake "nuptake.out" -file_nflux "nflux.out" -file_vmaxnlim "vmaxnlim.out" - -! Monthly outputs -file_mnpp "mnpp.out" -file_mlai "mlai.out" -file_mrh "mrh.out" -file_mgpp "mgpp.out" -file_mra "mra.out" -file_mnee "mnee.out" -file_maet "maet.out" -file_mpet "mpet.out" -file_mevap "mevap.out" -file_mintercep "mintercep.out" -file_mrunoff "mrunoff.out" -file_mwcont_upper "mwcont_upper.out" -file_mwcont_lower "mwcont_lower.out" -file_miso "miso.out" -file_mmon "mmon.out" - -!/////////////////////////////////////////////////////////////////////////////////////// - - - -!/////////////////////////////////////////////////////////////////////////////////////// -!// RUN PARAMETERS AND OPTIONS -! - -! Settings recognised by Plib -! Run GUESS with -help option for list of keywords and their meanings - -title 'LPJ-GUESS cohort mode - European species' - -vegmode "cohort" ! "cohort", "individual" or "population" -nyear_spinup 500 ! number of years to spin up the simulation for -ifcalcsla 1 ! whether ctonto calculate SLA from leaf longevity - ! (PFT-specific value can be specified in this file instead) -ifcalccton 1 ! whether to calculate leaf C:N min from leaf longevity - ! (PFT-specific value can be specified in this file instead) -iffire 1 ! whether to implement fire (1) or not (0) -npatch 1 ! number of replicate patches to simulate -patcharea 1000 ! patch area (m2) -estinterval 1 ! years between establishment events in cohort mode -ifdisturb 1 ! whether generic patch-destroying disturbances enabled -distinterval 100 ! average return time for generic patch-destroying disturbances - ! Hickler et al. (2011) used 200 -ifbgestab 1 ! whether background establishment enabled -ifsme 1 ! whether spatial mass effect enabled -ifstochestab 1 ! whether establishment stochastic -ifstochmort 1 ! whether mortality stochastic -ifcdebt 1 ! whether to allow vegetation C storage (1) or not (0) -wateruptake "rootdist" ! "wcont", "rootdist", "smart" or "speciesspecific", - ! see documentation for water_uptake() - -!/////////////////////////////////////////////////////////////////////////////// -! PROCESS SETTINGS SPECIFIC TO NITROGEN -!/////////////////////////////////////////////////////////////////////////////// - -ifcentury 1 ! whether to use CENTURY SOM dynamics (mandatory for N cycling) -ifnlim 0 ! whether plant growth limited by available N -freenyears 100 ! number of years to spin up without N limitation (needed to build up a N pool) -nfix_a 0.102 ! first term in N fixation eqn (Conservative 0.102, Central 0.234, Upper 0.367) -nfix_b 0.524 ! second term in N fixation eqn (Conservative 0.524, Central -0.172, Upper -0.754) -nrelocfrac 0.5 ! fraction of N retranslocated prior to leaf and root shedding - - -!/////////////////////////////////////////////////////////////////////////////// -! SERIALIZATION SETTINGS -!/////////////////////////////////////////////////////////////////////////////// -state_year 500 ! year to save/start state file (no setting = after spinup) -restart 0 ! wheter to start from a state file -save_state 0 ! wheter to save a state file -state_path "" ! directory to put state files in - - -ifsmoothgreffmort 1 ! whether to vary mort_greff smoothly with growth efficiency (1) - ! or to use the standard step-function (0) - ! greff_min values below calibrated for the smooth (1) option -ifdroughtlimitedestab 1 ! whether establishment is limited by growing season drought -ifrainonwetdaysonly 1 ! whether to rain on wet days only (1), or to rain a bit every day (0) -ifbvoc 0 ! whether to include BVOC calculations (1) or not (0) - -!!!!!!!!!!!! landcover parameters !!!!!!!!!!!!!! - -run_landcover 0 ! whether to use (and change) landcover fractions (1) or not (0) - -run_urban 0 ! whether to simulate barren land (1) or not (0) -run_crop 1 ! whether to simulate crop vegetation (1) or not (0) -run_forest 0 ! whether to simulate managed forest (1) or not (0) -run_pasture 0 ! whether to simulate pasture (1) or not (0) -run_natural 0 ! whether to simulate natural vegetation (1) or not (0) -run_peatland 1 ! whether to simulate peatland (1) or not (0) - -lcfrac_fixed 0 ! use landcover fractions (%) below (1) or read from input file (0) -lc_fixed_urban 0 ! URBAN -lc_fixed_cropland 50 ! CROPLAND -lc_fixed_pasture 0 ! PASTURE -lc_fixed_forest 0 ! FOREST -lc_fixed_natural 25 ! NATURAL -lc_fixed_peatland 25 ! PEATLAND -equal_landcover_area 0 ! divide gridcell into equal active landcover fractions - -!/////////////////////////////////////////////////////////////////////////////////////// - - -!/////////////////////////////////////////////////////////////////////////////////////// -!// PARAMETERS FOR PFTS -!// Run GUESS with -help option for list of keywords and their meanings - -group "common" ( - - ! Parameters common to all PFTs - - lambda_max 0.8 ! 0.8 - emax 5 ! 5 - reprfrac 0.1 ! 0.1 - wscal_min 0.35 ! 0.35 - drought_tolerance 1e-04 ! 0.0001 - ! default value - ensures that this has little effect even if - ! ifdroughtlimitedestab is turned on - landcover "natural" - turnover_harv_prod 1 ! 1 -) - - -group "tree" ( - - ! Parameters common to all trees - - common - lifeform "tree" - pathway "c3" - rootdist 0.6 0.4 - crownarea_max 40 ! 40 - turnover_root 0.7 ! 0.7 - ltor_max 1 ! 1 - k_allom2 40 ! 40 - k_allom3 0.67 ! 0.67 - k_rp 1.6 ! 1.6 - wooddens 200 ! 200 - cton_root 29 ! 29 - cton_sap 330 ! 330 - nuptoroot 0.0028 ! 0.0028 - km_volume 1.477e-06 ! 0.000001477 - kest_repr 200 ! 200 - kest_bg 0.1 ! 0.1 - kest_pres 1 ! 1 - litterme 0.3 ! 0.3 - harv_eff 0.7 ! 0.7 - res_outtake 0.75 ! 0.75 - harvest_slow_frac 0.33 ! 0.33 - turnover_harv_prod 0.04 ! 0.04 -) - -group "shrub" ( - common - lifeform "tree" - leafphysiognomy "broadleaf" - pathway "c3" - rootdist 0.6 0.4 - crownarea_max 10 ! 10 - turnover_root 0.7 ! 0.7 - ltor_max 1 ! 1 - k_allom1 100 ! 100 - k_allom2 5 ! 5 - k_allom3 0.67 ! 0.67 - k_rp 1.6 ! 1.6 - wooddens 250 ! 250 - cton_root 29 ! 29 - cton_sap 330 ! 330 - nuptoroot 0.0028 ! 0.0028 - km_volume 1.477e-06 ! 0.000001477 - fnstorage 0.3 ! 0.3 - kest_repr 200 ! 200 - kest_bg 0.1 ! 0.1 - kest_pres 1 ! 1 - litterme 0.3 ! 0.3 - longevity 100 ! 100 -) - -group "needle_leaved" ( - leafphysiognomy "needleleaf" - k_allom1 150 ! 150 - k_latosa 4000 ! 4000 - ga 0.14 ! 0.140 -) - -group "broad_leaved" ( - leafphysiognomy "broadleaf" - k_allom1 250 ! 250 - k_latosa 5000 ! 5000 - leaflong 0.5 ! 0.5 - turnover_leaf 1 ! 1 - ga 0.04 ! 0.040 -) - -group "grass" ( - - ! Parameters common to all grasses - - common - lifeform "grass" - leafphysiognomy "broadleaf" - ltor_max 0.5 ! 0.5 - cton_root 29 ! 29 - nuptoroot 0.00551 ! 0.00551 - km_volume 1.876e-06 ! 0.000001876 - fnstorage 0.3 ! 0.3 - respcoeff 1 ! 1.0 - litterme 0.2 ! 0.2 - ga 0.03 ! 0.030 -) - - -! greff_min values below calibrated for the smooth (ifsmoothgreffmort 1) option -! Many THdiff values here -group "shade_tolerant" ( - est_max 0.05 ! 0.05 - parff_min 350000 ! 350000 - alphar 3 ! 3.0 - greff_min 0.04 ! 0.04 - turnover_sap 0.05 ! 0.05 -) - - -! So far only trial values; not in global version -group "intermediate_shade_tolerant" ( - est_max 0.15 ! 0.15 - parff_min 2e+06 ! 2000000 - alphar 7 ! 7.0 - greff_min 0.06 ! 0.06 - turnover_sap 0.075 ! 0.075 -) - - -! From global version; values from orginal European version after "!" -group "shade_intolerant" ( - est_max 0.2 ! 0.2 - parff_min 2500000 ! 2500000 - alphar 10 ! 10.0 - greff_min 0.08 ! 0.08 - turnover_sap 0.1 ! 0.1 -) - - -group "boreal_tree" ( - respcoeff 1 ! 1.0 - pstemp_min -4 ! -4 - pstemp_low 10 ! 10 - pstemp_high 25 ! 25 - pstemp_max 38 ! 38 -) - -group "temperate_tree" ( - respcoeff 1 ! 1.0 - pstemp_min -2 ! -2 - pstemp_low 15 ! 15 - pstemp_high 25 ! 25 - pstemp_max 38 ! 38 -) - - -!/////////////////////////////////////////////////////////////////////////////////////// -! PFTs and species follow -! -! THdiff notes: -! 1. Thomas Hickler didn't give the values used for the tcmax_est and twmin_est parameters -! 2. rootdist is different for (z1 in brackets): Abi_alb (0.8), Bet_pen (0.8), Bet_pub (0.8), Car_bet (0.7), -! Cor_ave (0.7), Fag_syl (0.8), Fra_exc (0.8) - - -pft "Abi_alb" ( - - include 1 ! 1 - tree - shade_tolerant - temperate_tree - needle_leaved - phenology "evergreen" - !sla 9.3 ! 9.3 - gmin 0.3 ! 0.3 - fnstorage 0.05 ! 0.05 - leaflong 3 ! 3 - turnover_leaf 0.33 ! 0.33 - phengdd5ramp 0 ! 0 - tcmin_surv -2 ! -2 - tcmin_est -2 ! -2 - tcmax_est 2 ! 2 - twmin_est 6 ! 6 - gdd5min_est 1600 ! 1600 - k_chilla 0 ! 0 - k_chillb 100 ! 100 - k_chillk 0.05 ! 0.05 - fireresist 0.1 ! 0.1 - intc 0.06 ! 0.06 - longevity 350 ! 350 - drought_tolerance 0.35 ! 0.35 - eps_iso 0.05 ! 0.05 - seas_iso 0 ! 0 - eps_mon 1.8 ! 1.8 - storfrac_mon 0.5 ! 0.5 -) - - -pft "BES" ( - - ! boreal evergreen shrub - - include 1 ! 1 - shrub - boreal_tree - shade_intolerant - rootdist 0.8 0.2 - phenology "evergreen" - crownarea_max 3 ! 3 - k_allom1 20 ! 20 - k_allom2 5 ! 5 - k_latosa 500 ! 500 - !sla 9.3 ! 9.3 - gmin 0.3 ! 0.3 - leaflong 2 ! 2 - turnover_leaf 0.5 ! 0.5 - turnover_sap 0.05 ! 0.05 - phengdd5ramp 0 ! 0 - tcmin_surv -1000 ! -1000 - tcmin_est -1000 ! -1000 - tcmax_est -1 ! -1.0 - twmin_est -1000 ! -1000 - gdd5min_est 200 ! 200 - longevity 50 ! 50 - k_chilla 0 ! 0 - k_chillb 100 ! 100 - k_chillk 0.05 ! 0.05 - fireresist 0.1 ! 0.1 - intc 0.06 ! 0.06 - drought_tolerance 0.25 ! 0.25 - eps_iso 2 ! 2.0 - seas_iso 0 ! 0 - eps_mon 4 ! 4.0 - storfrac_mon 0.5 ! 0.5 - ga 0.04 ! 0.040 -) - - -pft "Bet_pen" ( - - include 1 ! 1 - tree - shade_intolerant - temperate_tree - broad_leaved - phenology "summergreen" - !sla 24.3 ! 24.3 - gmin 0.5 ! 0.5 - fnstorage 0.15 ! 0.15 - phengdd5ramp 200 ! 200 - tcmin_surv -30 ! -30 - tcmin_est -30 ! -30 - tcmax_est 7 ! 7 - twmin_est 5 ! 5 - gdd5min_est 700 ! 700 - k_chilla 0 ! 0 - k_chillb 350 ! 350 - k_chillk 0.05 ! 0.05 - fireresist 0.1 ! 0.1 - intc 0.02 ! 0.02 - longevity 200 ! 200 - drought_tolerance 0.42 ! 0.42 - eps_iso 0.2 ! 0.2 - seas_iso 1 ! 1 - eps_mon 6 ! 6. - storfrac_mon 0 ! 0. -) - - -pft "Bet_pub" ( - - include 1 ! 1 - tree - shade_intolerant - boreal_tree - broad_leaved - phenology "summergreen" - !sla 24.3 ! 24.3 - gmin 0.5 ! 0.5 - fnstorage 0.15 ! 0.15 - phengdd5ramp 200 ! 200 - tcmin_surv -30 ! -30 - tcmin_est -30 ! -30 - tcmax_est 3 ! 3 - twmin_est 5 ! 5 - gdd5min_est 350 ! 350 - k_chilla 0 ! 0 - k_chillb 350 ! 350 - k_chillk 0.05 ! 0.05 - fireresist 0.1 ! 0.1 - intc 0.02 ! 0.02 - longevity 200 ! 200 - drought_tolerance 0.5 ! 0.5 - eps_iso 0 ! 0. - seas_iso 1 ! 1 - eps_mon 1 ! 1.0 - storfrac_mon 0 ! 0. -) - - -pft "Car_bet" ( - - include 1 ! 1 - tree - intermediate_shade_tolerant - temperate_tree - broad_leaved - phenology "summergreen" - !sla 24.3 ! 24.3 - gmin 0.5 ! 0.5 - fnstorage 0.15 ! 0.15 - phengdd5ramp 200 ! 200 - tcmin_surv -8 ! -8 - tcmin_est -8 ! -8 - tcmax_est 5 ! 5 - twmin_est 5 ! 5 - gdd5min_est 1200 ! 1200 - k_chilla 0 ! 0 - k_chillb 600 ! 600 - k_chillk 0.05 ! 0.05 - fireresist 0.1 ! 0.1 - intc 0.02 ! 0.02 - longevity 350 ! 350 - drought_tolerance 0.33 ! 0.33 - eps_iso 0 ! 0. - seas_iso 1 ! 1 - eps_mon 0.08 ! 0.08 - storfrac_mon 0 ! 0. -) - - -pft "Cor_ave" ( - - include 1 ! 1 - tree - crownarea_max 15 - broad_leaved - intermediate_shade_tolerant - temperate_tree - phenology "summergreen" - crownarea_max 15 ! 15 - k_latosa 4000 ! 4000 - !sla 12 ! 12 - gmin 0.5 ! 0.5 - fnstorage 0.15 ! 0.15 - phengdd5ramp 200 ! 200 - tcmin_surv -11 ! -11 - tcmin_est -11 ! -11 - tcmax_est 7 ! 7 - twmin_est 5 ! 5 - gdd5min_est 800 ! 800 - k_chilla 0 ! 0 - k_chillb 350 ! 350 - k_chillk 0.05 ! 0.05 - fireresist 0.1 ! 0.1 - intc 0.02 ! 0.02 - longevity 100 ! 100 - drought_tolerance 0.3 ! 0.3 - eps_iso 0 ! 0. - seas_iso 1 ! 1 - eps_mon 0 ! 0. - storfrac_mon 0 ! 0. -) - - -pft "Fag_syl" ( - - include 1 ! 1 - tree - shade_tolerant - temperate_tree - broad_leaved - phenology "summergreen" - !sla 24.3 ! 24.3 - gmin 0.5 ! 0.5 - fnstorage 0.15 ! 0.15 - phengdd5ramp 200 ! 200 - tcmin_surv -4 ! -4.0 - tcmin_est -3.5 ! -3.5 - tcmax_est 6 ! 6 - twmin_est 5 ! 5 - gdd5min_est 1500 ! 1500 - k_chilla 0 ! 0 - k_chillb 600 ! 600 - k_chillk 0.05 ! 0.05 - fireresist 0.1 ! 0.1 - intc 0.02 ! 0.02 - longevity 500 ! 500 - drought_tolerance 0.3 ! 0.3 - eps_iso 0 ! 0. - seas_iso 1 ! 1 - eps_mon 10 ! 10. - storfrac_mon 0 ! 0. -) - - -pft "Fra_exc" ( - - include 1 ! 1 - tree - intermediate_shade_tolerant - temperate_tree - broad_leaved - phenology "summergreen" - !sla 24.3 ! 24.3 - gmin 0.5 ! 0.5 - fnstorage 0.15 ! 0.15 - phengdd5ramp 200 ! 200 - tcmin_surv -16 ! -16 - tcmin_est -16 ! -16 - tcmax_est 6 ! 6 - twmin_est 5 ! 5 - gdd5min_est 1100 ! 1100 - k_chilla 0 ! 0 - k_chillb 100 ! 100 - k_chillk 0.05 ! 0.05 - fireresist 0.1 ! 0.1 - intc 0.02 ! 0.02 - longevity 350 ! 350 - drought_tolerance 0.4 ! 0.4 - eps_iso 0 ! 0. - seas_iso 1 ! 1 - eps_mon 0 ! 0. - storfrac_mon 0 ! 0. -) - - -pft "Jun_oxy" ( - - ! Thomas Hickler's values - - include 1 ! 1 - tree ! THdiff: - shrub - shade_intolerant - temperate_tree - needle_leaved - rootdist 0.5 0.5 - phenology "evergreen" - k_latosa 1500 ! 1500 - crownarea_max 10 ! 10 - !sla 10 ! 10 - gmin 0.5 ! 0.5 - fnstorage 0.05 ! 0.05 - leaflong 1.5 ! 1.5 - turnover_leaf 0.6667 ! 0.6667 - phengdd5ramp 0 ! 0 - tcmin_surv 0 ! 0 - tcmin_est 1 ! 1 - tcmax_est 1000 ! 1000 - twmin_est -1000 ! -1000 - gdd5min_est 2200 ! 2200 - k_chilla 0 ! 0 - k_chillb 100 ! 100 - k_chillk 0.05 ! 0.05 - fireresist 0.4 ! 0.4 - intc 0.02 ! 0.02 - longevity 200 ! 200 - drought_tolerance 0.01 ! 0.01 - eps_iso 0 ! 0. - seas_iso 0 ! 0 - eps_mon 2 ! 2.0 - storfrac_mon 0.5 ! 0.5 -) - - -pft "MRS" ( - - ! Thomas Hickler's values - ! Mediterranean raingreen low shrub: - ! Cistus, Rosmarinus, Genista, Lavandula, Erica - - include 1 ! 1 - shrub ! THdiff: - has k_allom1 as 250 - shade_intolerant - temperate_tree - rootdist 0.9 0.1 - phenology "raingreen" - k_latosa 1500 ! 1500 - !sla 10 ! 10 - gmin 0.5 ! 0.5 - leaflong 0.5 ! 0.5 - turnover_leaf 1 ! 1 - phengdd5ramp 0 ! 0 - tcmin_surv 0 ! 0 - tcmin_est 1 ! 1 - tcmax_est 1000 ! 1000 - twmin_est -1000 ! -1000 - gdd5min_est 2200 ! 2200 - k_chilla 0 ! 0 - k_chillb 100 ! 100 - k_chillk 0.05 ! 0.05 - fireresist 0.3 ! 0.3 - intc 0.02 ! 0.02 - longevity 100 ! 100 - drought_tolerance 0.01 ! 0.01 - eps_iso 2 ! 2.0 - seas_iso 0 ! 0 - eps_mon 4 ! 4.0 - storfrac_mon 0.5 ! 0.5 - ga 0.04 ! 0.040 -) - - -pft "Pic_abi" ( - - include 1 ! 1 - tree - shade_tolerant - boreal_tree - needle_leaved - rootdist 0.8 0.2 - phenology "evergreen" - !sla 9.3 ! 9.3 - gmin 0.3 ! 0.3 - fnstorage 0.05 ! 0.05 - leaflong 3 ! 3 - turnover_leaf 0.33 ! 0.33 - phengdd5ramp 0 ! 0 - tcmin_surv -30 ! -30 - tcmin_est -30 ! -30 - tcmax_est -1.5 ! -1.5 - twmin_est 5 ! 5 - gdd5min_est 600 ! 600 - k_chilla 0 ! 0 - k_chillb 100 ! 100 - k_chillk 0.05 ! 0.05 - fireresist 0.1 ! 0.1 - intc 0.06 ! 0.06 - longevity 500 ! 500 - drought_tolerance 0.43 ! 0.43 - eps_iso 0.5 ! 0.5 - seas_iso 0 ! 0 - eps_mon 6 ! 6.0 - storfrac_mon 0.5 ! 0.5 -) - - -pft "Pic_sit" ( - - ! Bjarki's values - - include 1 ! 1 - tree - intermediate_shade_tolerant ! Savill's silviculture book - boreal_tree - needle_leaved - rootdist 0.8 0.2 ! ThomasH - phenology "evergreen" - k_latosa 4500 ! 4500 - !sla 9.3 ! 9.3 - gmin 0.3 ! 0.3 - fnstorage 0.05 ! 0.05 - leaflong 4 ! 4 - turnover_leaf 0.25 ! 0.25 - phengdd5ramp 0 ! 0 - tcmin_surv -18 ! -18 - tcmin_est -17 ! -17 - tcmax_est 5.5 ! 5.5 - twmin_est -1000 ! -1000 - gdd5min_est 450 ! 450 - k_chilla 0 ! 0 - k_chillb 100 ! 100 - k_chillk 0.05 ! 0.05 - fireresist 0.1 ! 0.1 - intc 0.06 ! 0.06 - longevity 700 ! 700 - drought_tolerance 0.5 ! 0.5 - eps_iso 0 ! 0. - seas_iso 0 ! 0 - eps_mon 0 ! 0. - storfrac_mon 0.5 ! 0.5 - - ! wooddens 200 - Should be less dens than P. abies (Savill) - ! turnover_sap 0.065 ! Bjarki 30% + abies! -) - - - -pft "Pin_syl" ( - - include 1 ! 1 - tree - intermediate_shade_tolerant - boreal_tree - needle_leaved - phenology "evergreen" - k_latosa 3000 ! 3000 - !sla 9.3 ! 9.3 - gmin 0.3 ! 0.3 - fnstorage 0.05 ! 0.05 - leaflong 2 ! 2 - turnover_leaf 0.5 ! 0.5 - phengdd5ramp 0 ! 0 - tcmin_surv -30 ! -30 - tcmin_est -30 ! -30 - tcmax_est -1 ! -1.0 - twmin_est 5 ! 5 - gdd5min_est 500 ! 500 - k_chilla 0 ! 0 - k_chillb 100 ! 100 - k_chillk 0.05 ! 0.05 - fireresist 0.2 ! 0.2 - intc 0.06 ! 0.06 - longevity 350 ! 350 - drought_tolerance 0.25 ! 0.25 - eps_iso 0 ! 0. - seas_iso 0 ! 0 - eps_mon 4 ! 4.0 - storfrac_mon 0.5 ! 0.5 -) - - -pft "Pin_hal" ( - - ! Thomas Hickler's values - - include 1 ! 1 - tree - shade_intolerant - temperate_tree - needle_leaved - phenology "evergreen" - k_latosa 3000 ! 3000 - !sla 9.3 ! 9.3 - gmin 0.3 ! 0.3 - fnstorage 0.05 ! 0.05 - leaflong 2 ! 2 - turnover_leaf 0.5 ! 0.5 - phengdd5ramp 0 ! 0 - tcmin_surv 3 ! 3 - tcmin_est 3 ! 3 - tcmax_est 9 ! 9 - twmin_est 21 ! 21 - gdd5min_est 3000 ! 3000 - k_chilla 0 ! 0 - k_chillb 100 ! 100 - k_chillk 0.05 ! 0.05 - fireresist 0.2 ! 0.2 - intc 0.06 ! 0.06 - longevity 350 ! 350 - drought_tolerance 0.05 ! 0.05 - eps_iso 0 ! 0. - seas_iso 0 ! 0 - eps_mon 10 ! 10.0 - storfrac_mon 0.5 ! 0.5 -) - - -pft "Pop_tre" ( - - ! Not included in Thomas Hickler's paper - - include 1 ! 1 - tree - shade_intolerant - temperate_tree - broad_leaved - rootdist 0.7 0.3 - phenology "summergreen" - !sla 24.3 ! 24.3 - gmin 0.5 ! 0.5 - fnstorage 0.15 ! 0.15 - phengdd5ramp 200 ! 200 - tcmin_surv -31 ! -31 - tcmin_est -30 ! -30 - tcmax_est 6 ! 6 - twmin_est -1000 ! -1000 - gdd5min_est 500 ! 500 - k_chilla 0 ! 0 - k_chillb 350 ! 350 - k_chillk 0.05 ! 0.05 - fireresist 0.2 ! 0.2 - intc 0.02 ! 0.02 - longevity 160 ! 160 - drought_tolerance 0.4 ! 0.4 - eps_iso 20 ! 20. - seas_iso 1 ! 1 - eps_mon 4 ! 4.0 - storfrac_mon 0 ! 0. -) - - -pft "Que_coc" ( - - ! Thomas Hickler's values - - include 1 ! 1 - shrub ! THdiff: - has k_allom1 as 250 - intermediate_shade_tolerant - temperate_tree - rootdist 0.5 0.5 - phenology "evergreen" - k_latosa 2500 ! 2500 - !sla 10 ! 10 - gmin 0.5 ! 0.5 - leaflong 1.5 ! 1.5 - turnover_leaf 0.6667 ! 0.6667 - phengdd5ramp 0 ! 0 - tcmin_surv 0 ! 0 - tcmin_est 0 ! 0 - tcmax_est 11 ! 11 - twmin_est 21 ! 21 - gdd5min_est 2200 ! 2200 - k_chilla 0 ! 0 - k_chillb 100 ! 100 - k_chillk 0.05 ! 0.05 - fireresist 0.3 ! 0.3 - intc 0.02 ! 0.02 - longevity 350 ! 350 - drought_tolerance 0.1 ! 0.1 - eps_iso 0.1 ! 0.1 - seas_iso 0 ! 0 - eps_mon 10 ! 10.0 - storfrac_mon 0 ! 0. - ga 0.04 ! 0.040 -) - - -pft "Que_ile" ( - - include 1 ! 1 - tree - intermediate_shade_tolerant - temperate_tree - broad_leaved - rootdist 0.5 0.5 - phenology "evergreen" - k_latosa 3000 ! 3000 - !sla 9.3 ! 9.3 - gmin 0.5 ! 0.5 - fnstorage 0.05 ! 0.05 - leaflong 2 ! 2 - turnover_leaf 0.5 ! 0.5 - phengdd5ramp 0 ! 0 - tcmin_surv 3 ! 3 - tcmin_est 3 ! 3 - tcmax_est 7 ! 7 - twmin_est 5 ! 5 - gdd5min_est 1800 ! 1800 - k_chilla 0 ! 0 - k_chillb 100 ! 100 - k_chillk 0.05 ! 0.05 - fireresist 0.3 ! 0.3 - intc 0.02 ! 0.02 - longevity 350 ! 350 - drought_tolerance 0.1 ! 0.1 - eps_iso 0.05 ! 0.05 - seas_iso 0 ! 0 - eps_mon 16 ! 16.0 - storfrac_mon 0 ! 0. -) - - -pft "Que_pub" ( - - ! Thomas Hickler's values - - include 1 ! 1 - tree - intermediate_shade_tolerant - temperate_tree - broad_leaved - phenology "summergreen" - !sla 24.3 ! 24.3 - gmin 0.5 ! 0.5 - fnstorage 0.15 ! 0.15 - phengdd5ramp 200 ! 200 - tcmin_surv -6 ! -6 - tcmin_est -5 ! -5 - tcmax_est 6 ! 6 - twmin_est -1000 ! -1000 - gdd5min_est 1900 ! 1900 - k_chilla 0 ! 0 - k_chillb 100 ! 100 - k_chillk 0.05 ! 0.05 - fireresist 0.2 ! 0.2 - intc 0.02 ! 0.02 - longevity 500 ! 500 - drought_tolerance 0.2 ! 0.2 - eps_iso 50 ! 50.0 - seas_iso 1 ! 1 - eps_mon 0 ! 0. - storfrac_mon 0 ! 0. -) - - -pft "Que_rob" ( - - include 1 ! 1 - tree - intermediate_shade_tolerant - temperate_tree - broad_leaved - phenology "summergreen" - !sla 24.3 ! 24.3 - gmin 0.5 ! 0.5 - fnstorage 0.15 ! 0.15 - phengdd5ramp 200 ! 200 - tcmin_surv -10 ! -10 - tcmin_est -9 ! -9 - tcmax_est 6 ! 6 - twmin_est 5 ! 5 - gdd5min_est 1100 ! 1100 - k_chilla 0 ! 0 - k_chillb 100 ! 100 - k_chillk 0.05 ! 0.05 - fireresist 0.2 ! 0.2 - intc 0.02 ! 0.02 - longevity 500 ! 500 - drought_tolerance 0.25 ! 0.25 - eps_iso 40 ! 40.0 - seas_iso 1 ! 1 - eps_mon 0 ! 0. - storfrac_mon 0 ! 0. -) - - -pft "Til_cor" ( - - include 1 ! 1 - tree - intermediate_shade_tolerant - temperate_tree - broad_leaved - rootdist 0.8 0.2 - phenology "summergreen" - !sla 24.3 ! 24.3 - gmin 0.5 ! 0.5 - fnstorage 0.15 ! 0.15 - phengdd5ramp 200 ! 200 - tcmin_surv -12 ! -12 - tcmin_est -11 ! -11 - tcmax_est 5 ! 5 - twmin_est 5 ! 5 - gdd5min_est 1100 ! 1100 - k_chilla 0 ! 0 - k_chillb 600 ! 600 - k_chillk 0.05 ! 0.05 - fireresist 0.1 ! 0.1 - intc 0.02 ! 0.02 - longevity 350 ! 350 - drought_tolerance 0.33 ! 0.33 - eps_iso 0 ! 0. - seas_iso 1 ! 1 - eps_mon 0 ! 0. - storfrac_mon 0 ! 0. -) - - -pft "Ulm_gla" ( - - ! Not included in Thomas Hickler's paper - - include 1 ! 1 - tree - intermediate_shade_tolerant - temperate_tree - broad_leaved - phenology "summergreen" - !sla 24.3 ! 24.3 - gmin 0.5 ! 0.5 - fnstorage 0.15 ! 0.15 - phengdd5ramp 200 ! 200 - tcmin_surv -10.5 ! -10.5 - tcmin_est -9.5 ! -9.5 - tcmax_est 6 ! 6 - twmin_est 5 ! 5 - gdd5min_est 850 ! 850 - k_chilla 0 ! 0 - k_chillb 100 ! 100 - k_chillk 0.05 ! 0.05 - fireresist 0.1 ! 0.1 - intc 0.02 ! 0.02 - longevity 350 ! 350 - drought_tolerance 0.4 ! 0.4 - eps_iso 0 ! 0. - seas_iso 1 ! 1 - eps_mon 0 ! 0. - storfrac_mon 0 ! 0. -) - - -pft "C3_gr" ( - - include 1 ! 1 - grass - pathway "c3" - rootdist 0.9 0.1 - phenology "any" - !sla 32.4 ! 32.4 - gmin 0.5 ! 0.5 - leaflong 0.5 ! 0.5 - turnover_leaf 1 ! 1 - turnover_root 0.7 ! 0.7 - phengdd5ramp 100 ! 100 - pstemp_min -5 ! -5 - pstemp_low 10 ! 10 - pstemp_high 30 ! 30 - pstemp_max 45 ! 45 - tcmin_surv -1000 ! -1000 - tcmin_est -1000 ! -1000 - tcmax_est 1000 ! 1000 - twmin_est -1000 ! -1000 - gdd5min_est 0 ! 0 - parff_min 2e+06 ! 2000000 - fireresist 0.5 ! 0.5 - intc 0.01 ! 0.01 - drought_tolerance 0.01 ! 0.01 - eps_iso 0 ! 0. - seas_iso 1 ! 1 - eps_mon 1 ! 1.0 - storfrac_mon 0.5 ! 0.5 -) - - -pft "C4_gr" ( - - include 1 ! 1 - grass - pathway "c4" - rootdist 0.9 0.1 - phenology "any" - gmin 0.5 ! 0.5 - leaflong 0.5 ! 0.5 - turnover_leaf 1 ! 1 - turnover_root 0.7 ! 0.7 - phengdd5ramp 100 ! 100 - pstemp_min 6 ! 6 - pstemp_low 20 ! 20 - pstemp_high 45 ! 45 - pstemp_max 55 ! 55 - tcmin_surv 15.5 ! 15.5 - tcmin_est 15.5 ! 15.5 - tcmax_est 1000 ! 1000 - twmin_est -1000 ! -1000 - gdd5min_est 0 ! 0 - parff_min 1e+06 ! 1000000 - fireresist 0.5 ! 0.5 - intc 0.01 ! 0.01 - drought_tolerance 0.01 ! 0.01 - eps_iso 0 ! 0. - seas_iso 1 ! 1 - eps_mon 1 ! 1.0 - storfrac_mon 0.5 ! 0.5 -) - - -! Reference: Savill's silviculture book: -! The Silviculture of Trees used in British Forestry, Peter S. Savill diff --git a/rLPJGUESS/inst/extdata/outputsForTests/run_ifdisturb/europe_cf.ins b/rLPJGUESS/inst/extdata/outputsForTests/run_ifdisturb/europe_cf.ins deleted file mode 100644 index b2b4f2f..0000000 --- a/rLPJGUESS/inst/extdata/outputsForTests/run_ifdisturb/europe_cf.ins +++ /dev/null @@ -1,50 +0,0 @@ -! -! Instruction file with European species to be used with the -! CF I/O module. -! -! Make sure to start LPJ-GUESS with -input cf when using this -! instruction file. -! - -import "/home/ramiro/Github/TestCode/LPJrunTest/runDirectory/europe.ins" - -coordinates_precision 2 - -!/////////////////////////////////////////////////////////////////////////////////////// -! Forcing Data & gridlists -! - -param "file_gridlist" (str "/home/ramiro/Github/TestCode/LPJrunTest/runDirectory/gridlist.txt") - -param "file_co2" (str "/home/ramiro/Github/TestCode/LPJrunTest/crudata/co2_1765-2500_RCP3.txt") -param "file_cru" (str "/home/ramiro/Github/TestCode/LPJrunTest/crudata/cru_1901_2006.bin") -param "file_cru_misc" (str "/home/ramiro/Github/TestCode/LPJrunTest/crudata/cru_1901_2006misc.bin") - -! N deposition (blank string to use constant pre-industrial level of 2 kgN/ha/year) -! type of N deposition time series: either "historic" (default), "rcp26", "rcp45","rcp60","rcp85" as ndep_timeseries in cfinput.cpp -! will work with "GlobalNitrogenDeposition.bin" no matter the value of ndep_timeseries, it will anyway get the right input file -! won´t work with any other RCP ndep file, no matter the value of ndep_timeseries - -param "file_ndep" (str "/home/ramiro/Github/TestCode/LPJrunTest/crudata/GlobalNitrogenDeposition.bin") - - -param "file_temp" (str "/home/ramiro/Github/TestCode/LPJrunTest/temp.nc") -param "variable_temp" (str "temp") - -param "file_prec" (str "/home/ramiro/Github/TestCode/LPJrunTest/prec.nc") -param "variable_prec" (str "prec") - -param "file_insol" (str "/home/ramiro/Github/TestCode/LPJrunTest/rad.nc") -param "variable_insol" (str "rad") - -! Wet days can only be used with monthly precipitation - param "file_wetdays" (str "") -! param "variable_wetdays" (str "_variable_wetdays_") - -! Min/max temp is required for BVOC, -! if BVOC is switched off these can be set to "" - param "file_min_temp" (str "") -! param "variable_min_temp" (str "_variable_min_temp_") - - param "file_max_temp" (str "") -! param "variable_max_temp" (str "_variable_max_temp_") diff --git a/rLPJGUESS/inst/extdata/outputsForTests/run_ifdisturb/gridlist.txt b/rLPJGUESS/inst/extdata/outputsForTests/run_ifdisturb/gridlist.txt deleted file mode 100644 index c8ed25d..0000000 --- a/rLPJGUESS/inst/extdata/outputsForTests/run_ifdisturb/gridlist.txt +++ /dev/null @@ -1 +0,0 @@ -0 Erfurt diff --git a/rLPJGUESS/inst/extdata/outputsForTests/run_ifdisturb/guess.log b/rLPJGUESS/inst/extdata/outputsForTests/run_ifdisturb/guess.log deleted file mode 100644 index 575587d..0000000 --- a/rLPJGUESS/inst/extdata/outputsForTests/run_ifdisturb/guess.log +++ /dev/null @@ -1,13 +0,0 @@ -[LPJ-GUESS Thu Jun 21 19:05:39 2018] - - - --------------------------------------------------- -LPJ-GUESS cohort mode - European species --------------------------------------------------- - -Commencing simulation for gridcell at (10.453,51.0792) -Description: Erfurt -Using soil code and Nitrogen deposition for (10.0,51.0) - -Finished diff --git a/rLPJGUESS/inst/extdata/outputsForTests/run_ifdisturb/outDirectory/aaet.out b/rLPJGUESS/inst/extdata/outputsForTests/run_ifdisturb/outDirectory/aaet.out deleted file mode 100644 index 4e53bdd..0000000 --- a/rLPJGUESS/inst/extdata/outputsForTests/run_ifdisturb/outDirectory/aaet.out +++ /dev/null @@ -1,63 +0,0 @@ - Lon Lat Year Abi_alb BES Bet_pen Bet_pub Car_bet Cor_ave Fag_syl Fra_exc Jun_oxy MRS Pic_abi Pic_sit Pin_syl Pin_hal Pop_tre Que_coc Que_ile Que_pub Que_rob Til_cor Ulm_gla C3_gr C4_gr Total - 10.45 51.08 1951 0.00 0.00 0.00 0.00 0.00 0.00 126.41 0.00 0.00 0.00 76.88 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 203.29 - 10.45 51.08 1952 0.00 0.00 0.00 0.00 0.00 0.00 126.92 0.00 0.00 0.00 71.36 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 198.27 - 10.45 51.08 1953 0.00 0.00 0.00 0.00 0.00 0.00 142.34 0.00 0.00 0.00 79.60 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 221.94 - 10.45 51.08 1954 0.00 0.00 0.00 0.00 0.00 0.00 121.65 0.00 0.00 0.00 70.50 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 192.15 - 10.45 51.08 1955 0.00 0.00 0.00 0.00 0.00 0.00 117.56 0.00 0.00 0.00 67.62 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 185.18 - 10.45 51.08 1956 0.00 0.00 0.00 0.00 0.00 0.00 116.44 0.00 0.00 0.00 66.97 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 183.42 - 10.45 51.08 1957 0.00 0.00 0.00 0.00 0.00 0.00 137.18 0.00 0.00 0.00 76.96 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 214.14 - 10.45 51.08 1958 0.00 0.00 0.00 0.00 0.00 0.00 133.20 0.00 0.00 0.00 73.89 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 207.09 - 10.45 51.08 1959 0.00 0.00 0.00 0.00 0.00 0.00 155.60 0.00 0.00 0.00 83.08 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 238.68 - 10.45 51.08 1960 0.00 0.00 0.00 0.00 0.00 0.00 132.18 0.00 0.00 0.00 73.04 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 205.22 - 10.45 51.08 1961 0.00 0.00 0.00 0.00 0.00 0.00 133.97 0.00 0.00 0.00 71.42 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 205.39 - 10.45 51.08 1962 0.00 0.00 0.00 0.00 0.00 0.00 129.06 0.00 0.00 0.00 68.77 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 197.84 - 10.45 51.08 1963 0.00 0.00 0.00 0.00 0.00 0.00 136.27 0.00 0.00 0.00 70.68 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 206.96 - 10.45 51.08 1964 0.00 0.00 0.00 0.00 0.00 0.00 150.47 0.00 0.00 0.00 77.58 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 228.05 - 10.45 51.08 1965 0.00 0.00 0.00 0.00 0.00 0.00 127.72 0.00 0.00 0.00 64.51 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 192.23 - 10.45 51.08 1966 0.00 0.00 0.00 0.00 0.00 0.00 142.19 0.00 0.00 0.00 69.36 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 211.55 - 10.45 51.08 1967 0.00 0.00 0.00 0.00 0.00 0.00 145.94 0.00 0.00 0.00 70.81 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 216.74 - 10.45 51.08 1968 0.00 0.00 0.00 0.00 0.00 0.00 136.46 0.00 0.00 0.00 67.72 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 204.19 - 10.45 51.08 1969 0.00 0.00 0.00 0.00 0.00 0.00 136.05 0.00 0.00 0.00 65.19 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 201.23 - 10.45 51.08 1970 0.00 0.00 0.00 0.00 0.00 0.00 131.54 0.00 0.00 0.00 60.48 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 192.03 - 10.45 51.08 1971 0.00 0.00 0.00 0.00 0.00 0.00 146.01 0.00 0.00 0.00 64.40 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 210.41 - 10.45 51.08 1972 0.00 0.00 0.00 0.00 0.00 0.00 128.98 0.00 0.00 0.00 57.90 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 186.88 - 10.45 51.08 1973 0.00 0.00 0.00 0.00 0.00 0.00 138.19 0.00 0.00 0.00 60.14 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 198.33 - 10.45 51.08 1974 0.00 0.00 0.00 0.00 0.00 0.00 134.83 0.00 0.00 0.00 56.98 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 191.81 - 10.45 51.08 1975 0.00 0.00 0.00 0.00 0.00 0.00 140.25 0.00 0.00 0.00 53.72 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 193.97 - 10.45 51.08 1976 0.00 0.00 0.00 0.00 0.00 0.00 148.85 0.00 0.00 0.00 56.69 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 205.54 - 10.45 51.08 1977 0.00 0.00 0.00 0.00 0.00 0.00 126.55 0.00 0.00 0.00 46.84 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 173.38 - 10.45 51.08 1978 0.00 0.00 0.00 0.00 0.00 0.00 128.45 0.00 0.00 0.00 47.99 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 176.44 - 10.45 51.08 1979 0.00 0.00 0.00 0.00 0.00 0.00 126.89 0.00 0.00 0.00 50.01 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 176.90 - 10.45 51.08 1980 0.00 0.00 0.00 0.00 0.00 0.00 125.73 0.00 0.00 0.00 49.52 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 175.25 - 10.45 51.08 1981 0.00 0.00 0.00 0.00 0.00 0.00 130.95 0.00 0.00 0.00 52.34 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 183.29 - 10.45 51.08 1982 0.00 0.00 0.00 0.00 0.00 0.00 146.00 0.00 0.00 0.00 60.56 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 206.56 - 10.45 51.08 1983 0.00 0.00 0.00 0.00 0.00 0.00 147.52 0.00 0.00 0.00 59.49 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 207.00 - 10.45 51.08 1984 0.00 0.00 0.00 0.00 0.00 0.00 96.72 0.00 0.00 0.00 47.41 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 144.13 - 10.45 51.08 1985 0.00 0.00 0.00 0.00 0.00 0.00 120.46 0.00 0.00 0.00 55.79 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 176.25 - 10.45 51.08 1986 0.00 0.00 0.00 0.00 0.00 0.00 118.72 0.00 0.00 0.00 54.66 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 173.38 - 10.45 51.08 1987 0.00 0.00 0.00 0.00 0.00 0.00 107.92 0.00 0.00 0.00 50.34 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 158.26 - 10.45 51.08 1988 0.00 0.00 0.00 0.00 0.00 0.00 125.57 0.00 0.00 0.00 58.60 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 184.17 - 10.45 51.08 1989 0.00 0.00 0.00 0.00 0.00 0.00 140.23 0.00 0.00 0.00 63.72 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 203.95 - 10.45 51.08 1990 0.00 0.00 0.00 0.00 0.00 0.00 142.18 0.00 0.00 0.00 65.18 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 207.36 - 10.45 51.08 1991 0.00 0.00 0.00 0.00 0.00 0.00 136.69 0.00 0.00 0.00 64.67 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 201.36 - 10.45 51.08 1992 0.00 0.00 0.00 0.00 0.00 0.00 136.33 0.00 0.00 0.00 65.88 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 202.21 - 10.45 51.08 1993 0.00 0.00 0.00 0.00 0.00 0.00 134.70 0.00 0.00 0.00 63.42 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 198.12 - 10.45 51.08 1994 0.00 0.00 0.00 0.00 0.00 0.00 143.36 0.00 0.00 0.00 66.88 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 210.24 - 10.45 51.08 1995 0.00 0.00 0.00 0.00 0.00 0.00 133.33 0.00 0.00 0.00 63.01 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 196.34 - 10.45 51.08 1996 0.00 0.00 0.00 0.00 0.00 0.00 111.57 0.00 0.00 0.00 53.76 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 165.33 - 10.45 51.08 1997 0.00 0.00 0.00 0.00 0.00 0.00 137.91 0.00 0.00 0.00 62.91 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 200.82 - 10.45 51.08 1998 0.00 0.00 0.00 0.00 0.00 0.00 132.37 0.00 0.00 0.00 61.08 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 193.44 - 10.45 51.08 1999 0.00 0.00 0.00 0.00 0.00 0.00 142.71 0.00 0.00 0.00 66.06 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 208.77 - 10.45 51.08 2000 0.00 0.00 0.00 0.00 0.00 0.00 139.54 0.00 0.00 0.00 65.05 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 204.59 - 10.45 51.08 2001 0.00 0.00 0.00 0.00 0.00 0.00 136.79 0.00 0.00 0.00 63.40 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 200.19 - 10.45 51.08 2002 0.00 0.00 0.00 0.00 0.00 0.00 130.46 0.00 0.00 0.00 58.93 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 189.39 - 10.45 51.08 2003 0.00 0.00 0.00 0.00 0.00 0.00 150.88 0.00 0.00 0.00 68.14 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 219.02 - 10.45 51.08 2004 0.00 0.00 0.00 0.00 0.00 0.00 146.33 0.00 0.00 0.00 64.30 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 210.63 - 10.45 51.08 2005 0.00 0.00 0.00 0.00 0.00 0.00 150.72 0.00 0.00 0.00 67.31 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 218.04 - 10.45 51.08 2006 0.00 0.00 0.00 0.00 0.00 0.00 156.20 0.00 0.00 0.00 68.49 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 224.68 - 10.45 51.08 2007 0.00 0.00 0.00 0.00 0.00 0.00 146.71 0.00 0.00 0.00 66.40 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 213.12 - 10.45 51.08 2008 0.00 0.00 0.00 0.00 0.00 0.00 147.93 0.00 0.00 0.00 64.93 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 212.85 - 10.45 51.08 2009 0.00 0.00 0.00 0.00 0.00 0.00 139.93 0.00 0.00 0.00 63.45 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 203.38 - 10.45 51.08 2010 0.00 0.00 0.00 0.00 0.00 0.00 139.44 0.00 0.00 0.00 60.46 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 199.91 - 10.45 51.08 2011 0.00 0.00 0.00 0.00 0.00 0.00 153.81 0.00 0.00 0.00 65.30 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 219.10 - 10.45 51.08 2012 0.00 0.00 0.00 0.00 0.00 0.00 147.20 0.00 0.00 0.00 62.50 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 209.70 diff --git a/rLPJGUESS/inst/extdata/outputsForTests/run_ifdisturb/outDirectory/agpp.out b/rLPJGUESS/inst/extdata/outputsForTests/run_ifdisturb/outDirectory/agpp.out deleted file mode 100644 index 82fb45b..0000000 --- a/rLPJGUESS/inst/extdata/outputsForTests/run_ifdisturb/outDirectory/agpp.out +++ /dev/null @@ -1,63 +0,0 @@ - Lon Lat Year Abi_alb BES Bet_pen Bet_pub Car_bet Cor_ave Fag_syl Fra_exc Jun_oxy MRS Pic_abi Pic_sit Pin_syl Pin_hal Pop_tre Que_coc Que_ile Que_pub Que_rob Til_cor Ulm_gla C3_gr C4_gr Total - 10.45 51.08 1951 0.000 0.000 0.000 0.000 0.000 0.000 0.757 0.000 0.000 0.000 0.199 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.956 - 10.45 51.08 1952 0.000 0.000 0.000 0.000 0.000 0.000 0.758 0.000 0.000 0.000 0.168 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.925 - 10.45 51.08 1953 0.000 0.000 0.000 0.000 0.000 0.000 0.852 0.000 0.000 0.000 0.188 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 1.040 - 10.45 51.08 1954 0.000 0.000 0.000 0.000 0.000 0.000 0.757 0.000 0.000 0.000 0.183 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.940 - 10.45 51.08 1955 0.000 0.000 0.000 0.000 0.000 0.000 0.739 0.000 0.000 0.000 0.167 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.906 - 10.45 51.08 1956 0.000 0.000 0.000 0.000 0.000 0.000 0.760 0.000 0.000 0.000 0.175 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.935 - 10.45 51.08 1957 0.000 0.000 0.000 0.000 0.000 0.000 0.821 0.000 0.000 0.000 0.176 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.997 - 10.45 51.08 1958 0.000 0.000 0.000 0.000 0.000 0.000 0.808 0.000 0.000 0.000 0.159 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.966 - 10.45 51.08 1959 0.000 0.000 0.000 0.000 0.000 0.000 0.902 0.000 0.000 0.000 0.173 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 1.075 - 10.45 51.08 1960 0.000 0.000 0.000 0.000 0.000 0.000 0.815 0.000 0.000 0.000 0.165 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.980 - 10.45 51.08 1961 0.000 0.000 0.000 0.000 0.000 0.000 0.867 0.000 0.000 0.000 0.164 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 1.031 - 10.45 51.08 1962 0.000 0.000 0.000 0.000 0.000 0.000 0.817 0.000 0.000 0.000 0.152 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.969 - 10.45 51.08 1963 0.000 0.000 0.000 0.000 0.000 0.000 0.840 0.000 0.000 0.000 0.147 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.988 - 10.45 51.08 1964 0.000 0.000 0.000 0.000 0.000 0.000 0.904 0.000 0.000 0.000 0.145 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 1.049 - 10.45 51.08 1965 0.000 0.000 0.000 0.000 0.000 0.000 0.825 0.000 0.000 0.000 0.150 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.975 - 10.45 51.08 1966 0.000 0.000 0.000 0.000 0.000 0.000 0.910 0.000 0.000 0.000 0.143 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 1.054 - 10.45 51.08 1967 0.000 0.000 0.000 0.000 0.000 0.000 0.872 0.000 0.000 0.000 0.153 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 1.025 - 10.45 51.08 1968 0.000 0.000 0.000 0.000 0.000 0.000 0.879 0.000 0.000 0.000 0.137 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 1.016 - 10.45 51.08 1969 0.000 0.000 0.000 0.000 0.000 0.000 0.841 0.000 0.000 0.000 0.124 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.965 - 10.45 51.08 1970 0.000 0.000 0.000 0.000 0.000 0.000 0.827 0.000 0.000 0.000 0.120 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.947 - 10.45 51.08 1971 0.000 0.000 0.000 0.000 0.000 0.000 0.874 0.000 0.000 0.000 0.131 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 1.005 - 10.45 51.08 1972 0.000 0.000 0.000 0.000 0.000 0.000 0.823 0.000 0.000 0.000 0.131 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.954 - 10.45 51.08 1973 0.000 0.000 0.000 0.000 0.000 0.000 0.830 0.000 0.000 0.000 0.125 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.955 - 10.45 51.08 1974 0.000 0.000 0.000 0.000 0.000 0.000 0.869 0.000 0.000 0.000 0.130 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 1.000 - 10.45 51.08 1975 0.000 0.000 0.000 0.000 0.000 0.000 0.835 0.000 0.000 0.000 0.129 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.964 - 10.45 51.08 1976 0.000 0.000 0.000 0.000 0.000 0.000 0.857 0.000 0.000 0.000 0.101 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.958 - 10.45 51.08 1977 0.000 0.000 0.000 0.000 0.000 0.000 0.845 0.000 0.000 0.000 0.103 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.948 - 10.45 51.08 1978 0.000 0.000 0.000 0.000 0.000 0.000 0.822 0.000 0.000 0.000 0.107 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.929 - 10.45 51.08 1979 0.000 0.000 0.000 0.000 0.000 0.000 0.798 0.000 0.000 0.000 0.110 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.908 - 10.45 51.08 1980 0.000 0.000 0.000 0.000 0.000 0.000 0.788 0.000 0.000 0.000 0.118 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.906 - 10.45 51.08 1981 0.000 0.000 0.000 0.000 0.000 0.000 0.881 0.000 0.000 0.000 0.104 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.985 - 10.45 51.08 1982 0.000 0.000 0.000 0.000 0.000 0.000 0.860 0.000 0.000 0.000 0.122 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.982 - 10.45 51.08 1983 0.000 0.000 0.000 0.000 0.000 0.000 0.902 0.000 0.000 0.000 0.110 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 1.012 - 10.45 51.08 1984 0.000 0.000 0.000 0.000 0.000 0.000 0.757 0.000 0.000 0.000 0.110 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.867 - 10.45 51.08 1985 0.000 0.000 0.000 0.000 0.000 0.000 0.807 0.000 0.000 0.000 0.120 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.926 - 10.45 51.08 1986 0.000 0.000 0.000 0.000 0.000 0.000 0.789 0.000 0.000 0.000 0.117 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.905 - 10.45 51.08 1987 0.000 0.000 0.000 0.000 0.000 0.000 0.770 0.000 0.000 0.000 0.118 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.888 - 10.45 51.08 1988 0.000 0.000 0.000 0.000 0.000 0.000 0.852 0.000 0.000 0.000 0.134 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.987 - 10.45 51.08 1989 0.000 0.000 0.000 0.000 0.000 0.000 0.926 0.000 0.000 0.000 0.142 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 1.067 - 10.45 51.08 1990 0.000 0.000 0.000 0.000 0.000 0.000 0.963 0.000 0.000 0.000 0.148 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 1.112 - 10.45 51.08 1991 0.000 0.000 0.000 0.000 0.000 0.000 0.884 0.000 0.000 0.000 0.134 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 1.018 - 10.45 51.08 1992 0.000 0.000 0.000 0.000 0.000 0.000 0.846 0.000 0.000 0.000 0.145 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.991 - 10.45 51.08 1993 0.000 0.000 0.000 0.000 0.000 0.000 0.909 0.000 0.000 0.000 0.133 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 1.042 - 10.45 51.08 1994 0.000 0.000 0.000 0.000 0.000 0.000 0.898 0.000 0.000 0.000 0.134 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 1.033 - 10.45 51.08 1995 0.000 0.000 0.000 0.000 0.000 0.000 0.845 0.000 0.000 0.000 0.127 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.972 - 10.45 51.08 1996 0.000 0.000 0.000 0.000 0.000 0.000 0.782 0.000 0.000 0.000 0.114 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.895 - 10.45 51.08 1997 0.000 0.000 0.000 0.000 0.000 0.000 0.882 0.000 0.000 0.000 0.138 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 1.020 - 10.45 51.08 1998 0.000 0.000 0.000 0.000 0.000 0.000 0.910 0.000 0.000 0.000 0.132 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 1.042 - 10.45 51.08 1999 0.000 0.000 0.000 0.000 0.000 0.000 0.950 0.000 0.000 0.000 0.138 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 1.088 - 10.45 51.08 2000 0.000 0.000 0.000 0.000 0.000 0.000 0.921 0.000 0.000 0.000 0.140 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 1.061 - 10.45 51.08 2001 0.000 0.000 0.000 0.000 0.000 0.000 0.915 0.000 0.000 0.000 0.130 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 1.044 - 10.45 51.08 2002 0.000 0.000 0.000 0.000 0.000 0.000 0.877 0.000 0.000 0.000 0.129 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 1.005 - 10.45 51.08 2003 0.000 0.000 0.000 0.000 0.000 0.000 0.893 0.000 0.000 0.000 0.135 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 1.029 - 10.45 51.08 2004 0.000 0.000 0.000 0.000 0.000 0.000 0.996 0.000 0.000 0.000 0.133 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 1.129 - 10.45 51.08 2005 0.000 0.000 0.000 0.000 0.000 0.000 0.983 0.000 0.000 0.000 0.130 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 1.114 - 10.45 51.08 2006 0.000 0.000 0.000 0.000 0.000 0.000 0.969 0.000 0.000 0.000 0.120 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 1.089 - 10.45 51.08 2007 0.000 0.000 0.000 0.000 0.000 0.000 0.991 0.000 0.000 0.000 0.151 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 1.141 - 10.45 51.08 2008 0.000 0.000 0.000 0.000 0.000 0.000 0.962 0.000 0.000 0.000 0.133 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 1.096 - 10.45 51.08 2009 0.000 0.000 0.000 0.000 0.000 0.000 0.973 0.000 0.000 0.000 0.133 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 1.106 - 10.45 51.08 2010 0.000 0.000 0.000 0.000 0.000 0.000 0.905 0.000 0.000 0.000 0.118 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 1.023 - 10.45 51.08 2011 0.000 0.000 0.000 0.000 0.000 0.000 1.053 0.000 0.000 0.000 0.137 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 1.190 - 10.45 51.08 2012 0.000 0.000 0.000 0.000 0.000 0.000 0.991 0.000 0.000 0.000 0.131 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 1.122 diff --git a/rLPJGUESS/inst/extdata/outputsForTests/run_ifdisturb/outDirectory/aiso.out b/rLPJGUESS/inst/extdata/outputsForTests/run_ifdisturb/outDirectory/aiso.out deleted file mode 100644 index 7d6e828..0000000 --- a/rLPJGUESS/inst/extdata/outputsForTests/run_ifdisturb/outDirectory/aiso.out +++ /dev/null @@ -1,63 +0,0 @@ - Lon Lat Year Abi_alb BES Bet_pen Bet_pub Car_bet Cor_ave Fag_syl Fra_exc Jun_oxy MRS Pic_abi Pic_sit Pin_syl Pin_hal Pop_tre Que_coc Que_ile Que_pub Que_rob Til_cor Ulm_gla C3_gr C4_gr Total - 10.45 51.08 1951 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1952 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1953 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1954 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1955 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1956 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1957 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1958 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1959 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1960 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1961 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1962 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1963 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1964 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1965 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1966 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1967 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1968 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1969 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1970 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1971 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1972 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1973 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1974 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1975 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1976 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1977 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1978 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1979 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1980 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1981 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1982 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1983 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1984 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1985 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1986 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1987 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1988 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1989 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1990 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1991 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1992 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1993 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1994 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1995 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1996 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1997 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1998 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1999 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 2000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 2001 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 2002 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 2003 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 2004 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 2005 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 2006 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 2007 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 2008 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 2009 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 2010 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 2011 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 2012 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 diff --git a/rLPJGUESS/inst/extdata/outputsForTests/run_ifdisturb/outDirectory/amon.out b/rLPJGUESS/inst/extdata/outputsForTests/run_ifdisturb/outDirectory/amon.out deleted file mode 100644 index 7d6e828..0000000 --- a/rLPJGUESS/inst/extdata/outputsForTests/run_ifdisturb/outDirectory/amon.out +++ /dev/null @@ -1,63 +0,0 @@ - Lon Lat Year Abi_alb BES Bet_pen Bet_pub Car_bet Cor_ave Fag_syl Fra_exc Jun_oxy MRS Pic_abi Pic_sit Pin_syl Pin_hal Pop_tre Que_coc Que_ile Que_pub Que_rob Til_cor Ulm_gla C3_gr C4_gr Total - 10.45 51.08 1951 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1952 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1953 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1954 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1955 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1956 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1957 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1958 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1959 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1960 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1961 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1962 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1963 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1964 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1965 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1966 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1967 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1968 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1969 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1970 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1971 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1972 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1973 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1974 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1975 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1976 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1977 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1978 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1979 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1980 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1981 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1982 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1983 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1984 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1985 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1986 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1987 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1988 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1989 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1990 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1991 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1992 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1993 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1994 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1995 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1996 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1997 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1998 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1999 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 2000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 2001 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 2002 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 2003 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 2004 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 2005 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 2006 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 2007 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 2008 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 2009 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 2010 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 2011 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 2012 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 diff --git a/rLPJGUESS/inst/extdata/outputsForTests/run_ifdisturb/outDirectory/anpp.out b/rLPJGUESS/inst/extdata/outputsForTests/run_ifdisturb/outDirectory/anpp.out deleted file mode 100644 index 22d7ace..0000000 --- a/rLPJGUESS/inst/extdata/outputsForTests/run_ifdisturb/outDirectory/anpp.out +++ /dev/null @@ -1,63 +0,0 @@ - Lon Lat Year Abi_alb BES Bet_pen Bet_pub Car_bet Cor_ave Fag_syl Fra_exc Jun_oxy MRS Pic_abi Pic_sit Pin_syl Pin_hal Pop_tre Que_coc Que_ile Que_pub Que_rob Til_cor Ulm_gla C3_gr C4_gr Total - 10.45 51.08 1951 0.000 0.000 0.000 0.000 0.000 0.000 0.350 0.000 0.000 0.000 0.098 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.448 - 10.45 51.08 1952 0.000 0.000 0.000 0.000 0.000 0.000 0.345 0.000 0.000 0.000 0.073 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.418 - 10.45 51.08 1953 0.000 0.000 0.000 0.000 0.000 0.000 0.390 0.000 0.000 0.000 0.088 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.478 - 10.45 51.08 1954 0.000 0.000 0.000 0.000 0.000 0.000 0.332 0.000 0.000 0.000 0.088 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.420 - 10.45 51.08 1955 0.000 0.000 0.000 0.000 0.000 0.000 0.327 0.000 0.000 0.000 0.076 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.403 - 10.45 51.08 1956 0.000 0.000 0.000 0.000 0.000 0.000 0.345 0.000 0.000 0.000 0.084 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.429 - 10.45 51.08 1957 0.000 0.000 0.000 0.000 0.000 0.000 0.361 0.000 0.000 0.000 0.078 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.440 - 10.45 51.08 1958 0.000 0.000 0.000 0.000 0.000 0.000 0.345 0.000 0.000 0.000 0.065 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.410 - 10.45 51.08 1959 0.000 0.000 0.000 0.000 0.000 0.000 0.405 0.000 0.000 0.000 0.076 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.480 - 10.45 51.08 1960 0.000 0.000 0.000 0.000 0.000 0.000 0.354 0.000 0.000 0.000 0.074 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.428 - 10.45 51.08 1961 0.000 0.000 0.000 0.000 0.000 0.000 0.373 0.000 0.000 0.000 0.071 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.444 - 10.45 51.08 1962 0.000 0.000 0.000 0.000 0.000 0.000 0.372 0.000 0.000 0.000 0.071 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.443 - 10.45 51.08 1963 0.000 0.000 0.000 0.000 0.000 0.000 0.371 0.000 0.000 0.000 0.065 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.435 - 10.45 51.08 1964 0.000 0.000 0.000 0.000 0.000 0.000 0.395 0.000 0.000 0.000 0.062 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.457 - 10.45 51.08 1965 0.000 0.000 0.000 0.000 0.000 0.000 0.366 0.000 0.000 0.000 0.072 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.438 - 10.45 51.08 1966 0.000 0.000 0.000 0.000 0.000 0.000 0.400 0.000 0.000 0.000 0.062 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.462 - 10.45 51.08 1967 0.000 0.000 0.000 0.000 0.000 0.000 0.353 0.000 0.000 0.000 0.068 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.421 - 10.45 51.08 1968 0.000 0.000 0.000 0.000 0.000 0.000 0.377 0.000 0.000 0.000 0.059 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.436 - 10.45 51.08 1969 0.000 0.000 0.000 0.000 0.000 0.000 0.347 0.000 0.000 0.000 0.050 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.396 - 10.45 51.08 1970 0.000 0.000 0.000 0.000 0.000 0.000 0.342 0.000 0.000 0.000 0.050 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.391 - 10.45 51.08 1971 0.000 0.000 0.000 0.000 0.000 0.000 0.361 0.000 0.000 0.000 0.058 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.419 - 10.45 51.08 1972 0.000 0.000 0.000 0.000 0.000 0.000 0.351 0.000 0.000 0.000 0.062 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.413 - 10.45 51.08 1973 0.000 0.000 0.000 0.000 0.000 0.000 0.335 0.000 0.000 0.000 0.057 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.391 - 10.45 51.08 1974 0.000 0.000 0.000 0.000 0.000 0.000 0.368 0.000 0.000 0.000 0.061 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.430 - 10.45 51.08 1975 0.000 0.000 0.000 0.000 0.000 0.000 0.320 0.000 0.000 0.000 0.057 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.377 - 10.45 51.08 1976 0.000 0.000 0.000 0.000 0.000 0.000 0.343 0.000 0.000 0.000 0.044 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.388 - 10.45 51.08 1977 0.000 0.000 0.000 0.000 0.000 0.000 0.350 0.000 0.000 0.000 0.049 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.398 - 10.45 51.08 1978 0.000 0.000 0.000 0.000 0.000 0.000 0.347 0.000 0.000 0.000 0.053 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.400 - 10.45 51.08 1979 0.000 0.000 0.000 0.000 0.000 0.000 0.323 0.000 0.000 0.000 0.054 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.377 - 10.45 51.08 1980 0.000 0.000 0.000 0.000 0.000 0.000 0.324 0.000 0.000 0.000 0.060 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.384 - 10.45 51.08 1981 0.000 0.000 0.000 0.000 0.000 0.000 0.376 0.000 0.000 0.000 0.047 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.423 - 10.45 51.08 1982 0.000 0.000 0.000 0.000 0.000 0.000 0.323 0.000 0.000 0.000 0.057 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.380 - 10.45 51.08 1983 0.000 0.000 0.000 0.000 0.000 0.000 0.366 0.000 0.000 0.000 0.048 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.415 - 10.45 51.08 1984 0.000 0.000 0.000 0.000 0.000 0.000 0.297 0.000 0.000 0.000 0.053 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.351 - 10.45 51.08 1985 0.000 0.000 0.000 0.000 0.000 0.000 0.362 0.000 0.000 0.000 0.060 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.422 - 10.45 51.08 1986 0.000 0.000 0.000 0.000 0.000 0.000 0.334 0.000 0.000 0.000 0.056 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.391 - 10.45 51.08 1987 0.000 0.000 0.000 0.000 0.000 0.000 0.337 0.000 0.000 0.000 0.059 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.396 - 10.45 51.08 1988 0.000 0.000 0.000 0.000 0.000 0.000 0.360 0.000 0.000 0.000 0.067 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.426 - 10.45 51.08 1989 0.000 0.000 0.000 0.000 0.000 0.000 0.400 0.000 0.000 0.000 0.069 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.469 - 10.45 51.08 1990 0.000 0.000 0.000 0.000 0.000 0.000 0.423 0.000 0.000 0.000 0.074 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.497 - 10.45 51.08 1991 0.000 0.000 0.000 0.000 0.000 0.000 0.366 0.000 0.000 0.000 0.062 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.427 - 10.45 51.08 1992 0.000 0.000 0.000 0.000 0.000 0.000 0.318 0.000 0.000 0.000 0.068 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.386 - 10.45 51.08 1993 0.000 0.000 0.000 0.000 0.000 0.000 0.388 0.000 0.000 0.000 0.061 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.449 - 10.45 51.08 1994 0.000 0.000 0.000 0.000 0.000 0.000 0.338 0.000 0.000 0.000 0.058 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.396 - 10.45 51.08 1995 0.000 0.000 0.000 0.000 0.000 0.000 0.324 0.000 0.000 0.000 0.055 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.379 - 10.45 51.08 1996 0.000 0.000 0.000 0.000 0.000 0.000 0.324 0.000 0.000 0.000 0.052 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.377 - 10.45 51.08 1997 0.000 0.000 0.000 0.000 0.000 0.000 0.359 0.000 0.000 0.000 0.067 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.426 - 10.45 51.08 1998 0.000 0.000 0.000 0.000 0.000 0.000 0.374 0.000 0.000 0.000 0.061 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.435 - 10.45 51.08 1999 0.000 0.000 0.000 0.000 0.000 0.000 0.387 0.000 0.000 0.000 0.063 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.451 - 10.45 51.08 2000 0.000 0.000 0.000 0.000 0.000 0.000 0.354 0.000 0.000 0.000 0.063 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.416 - 10.45 51.08 2001 0.000 0.000 0.000 0.000 0.000 0.000 0.367 0.000 0.000 0.000 0.057 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.425 - 10.45 51.08 2002 0.000 0.000 0.000 0.000 0.000 0.000 0.332 0.000 0.000 0.000 0.057 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.389 - 10.45 51.08 2003 0.000 0.000 0.000 0.000 0.000 0.000 0.323 0.000 0.000 0.000 0.060 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.383 - 10.45 51.08 2004 0.000 0.000 0.000 0.000 0.000 0.000 0.437 0.000 0.000 0.000 0.062 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.499 - 10.45 51.08 2005 0.000 0.000 0.000 0.000 0.000 0.000 0.408 0.000 0.000 0.000 0.058 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.466 - 10.45 51.08 2006 0.000 0.000 0.000 0.000 0.000 0.000 0.368 0.000 0.000 0.000 0.048 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.416 - 10.45 51.08 2007 0.000 0.000 0.000 0.000 0.000 0.000 0.392 0.000 0.000 0.000 0.075 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.466 - 10.45 51.08 2008 0.000 0.000 0.000 0.000 0.000 0.000 0.377 0.000 0.000 0.000 0.059 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.436 - 10.45 51.08 2009 0.000 0.000 0.000 0.000 0.000 0.000 0.382 0.000 0.000 0.000 0.060 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.442 - 10.45 51.08 2010 0.000 0.000 0.000 0.000 0.000 0.000 0.357 0.000 0.000 0.000 0.051 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.408 - 10.45 51.08 2011 0.000 0.000 0.000 0.000 0.000 0.000 0.431 0.000 0.000 0.000 0.064 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.496 - 10.45 51.08 2012 0.000 0.000 0.000 0.000 0.000 0.000 0.384 0.000 0.000 0.000 0.060 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.444 diff --git a/rLPJGUESS/inst/extdata/outputsForTests/run_ifdisturb/outDirectory/cflux.out b/rLPJGUESS/inst/extdata/outputsForTests/run_ifdisturb/outDirectory/cflux.out deleted file mode 100644 index c76ec1a..0000000 --- a/rLPJGUESS/inst/extdata/outputsForTests/run_ifdisturb/outDirectory/cflux.out +++ /dev/null @@ -1,63 +0,0 @@ - Lon Lat Year Veg Repr Soil Fire Est NEE - 10.45 51.08 1951 -0.448 0.045 0.431 0.008 0.000 0.03594 - 10.45 51.08 1952 -0.418 0.042 0.441 0.046 0.000 0.11141 - 10.45 51.08 1953 -0.478 0.048 0.499 0.012 0.000 0.08065 - 10.45 51.08 1954 -0.420 0.042 0.397 0.007 0.000 0.02562 - 10.45 51.08 1955 -0.403 0.040 0.361 0.007 -0.000 0.00529 - 10.45 51.08 1956 -0.429 0.043 0.345 0.007 -0.000 -0.03408 - 10.45 51.08 1957 -0.440 0.044 0.404 0.007 0.000 0.01485 - 10.45 51.08 1958 -0.410 0.041 0.389 0.006 0.000 0.02608 - 10.45 51.08 1959 -0.480 0.048 0.452 0.051 0.000 0.07079 - 10.45 51.08 1960 -0.428 0.043 0.362 0.006 0.000 -0.01641 - 10.45 51.08 1961 -0.444 0.044 0.417 0.015 0.000 0.03193 - 10.45 51.08 1962 -0.443 0.044 0.361 0.018 -0.000 -0.02026 - 10.45 51.08 1963 -0.435 0.044 0.347 0.006 0.000 -0.03886 - 10.45 51.08 1964 -0.457 0.046 0.399 0.010 0.000 -0.00293 - 10.45 51.08 1965 -0.438 0.044 0.316 0.005 0.000 -0.07249 - 10.45 51.08 1966 -0.462 0.046 0.341 0.005 -0.000 -0.06974 - 10.45 51.08 1967 -0.421 0.042 0.368 0.005 0.000 -0.00644 - 10.45 51.08 1968 -0.436 0.044 0.352 0.005 0.000 -0.03576 - 10.45 51.08 1969 -0.396 0.040 0.337 0.019 0.000 -0.00006 - 10.45 51.08 1970 -0.391 0.039 0.320 0.005 0.000 -0.02718 - 10.45 51.08 1971 -0.419 0.042 0.382 0.033 0.000 0.03745 - 10.45 51.08 1972 -0.413 0.041 0.282 0.004 0.000 -0.08577 - 10.45 51.08 1973 -0.391 0.039 0.362 0.009 -0.000 0.01947 - 10.45 51.08 1974 -0.430 0.043 0.312 0.004 0.000 -0.07057 - 10.45 51.08 1975 -0.377 0.038 0.362 0.013 -0.000 0.03597 - 10.45 51.08 1976 -0.388 0.039 0.423 0.051 0.000 0.12513 - 10.45 51.08 1977 -0.398 0.040 0.331 0.007 0.000 -0.02020 - 10.45 51.08 1978 -0.400 0.040 0.358 0.007 0.000 0.00461 - 10.45 51.08 1979 -0.377 0.038 0.369 0.007 0.000 0.03665 - 10.45 51.08 1980 -0.384 0.038 0.368 0.011 0.000 0.03302 - 10.45 51.08 1981 -0.423 0.042 0.353 0.006 0.000 -0.02098 - 10.45 51.08 1982 -0.380 0.038 0.473 0.047 0.000 0.17798 - 10.45 51.08 1983 -0.415 0.041 0.405 0.020 0.000 0.05225 - 10.45 51.08 1984 -0.351 0.035 0.293 0.006 0.000 -0.01643 - 10.45 51.08 1985 -0.422 0.042 0.415 0.009 0.000 0.04524 - 10.45 51.08 1986 -0.391 0.039 0.378 0.006 0.000 0.03271 - 10.45 51.08 1987 -0.396 0.040 0.308 0.006 -0.000 -0.04227 - 10.45 51.08 1988 -0.426 0.043 0.435 0.015 0.000 0.06660 - 10.45 51.08 1989 -0.469 0.047 0.429 0.020 -0.000 0.02685 - 10.45 51.08 1990 -0.497 0.050 0.402 0.027 0.000 -0.01880 - 10.45 51.08 1991 -0.427 0.043 0.402 0.019 -0.000 0.03569 - 10.45 51.08 1992 -0.386 0.039 0.387 0.009 0.000 0.04894 - 10.45 51.08 1993 -0.449 0.045 0.334 0.009 0.000 -0.06118 - 10.45 51.08 1994 -0.396 0.040 0.373 0.005 -0.000 0.02226 - 10.45 51.08 1995 -0.379 0.038 0.336 0.005 0.000 -0.00025 - 10.45 51.08 1996 -0.377 0.038 0.279 0.005 0.000 -0.05514 - 10.45 51.08 1997 -0.426 0.043 0.368 0.009 0.000 -0.00597 - 10.45 51.08 1998 -0.435 0.043 0.343 0.005 0.000 -0.04371 - 10.45 51.08 1999 -0.451 0.045 0.361 0.004 -0.000 -0.03978 - 10.45 51.08 2000 -0.416 0.042 0.366 0.006 0.000 -0.00242 - 10.45 51.08 2001 -0.425 0.042 0.337 0.010 -0.000 -0.03565 - 10.45 51.08 2002 -0.389 0.039 0.307 0.004 0.000 -0.03873 - 10.45 51.08 2003 -0.383 0.038 0.383 0.025 0.000 0.06321 - 10.45 51.08 2004 -0.499 0.050 0.336 0.008 0.000 -0.10507 - 10.45 51.08 2005 -0.466 0.047 0.326 0.006 0.000 -0.08839 - 10.45 51.08 2006 -0.416 0.042 0.337 0.004 0.000 -0.03357 - 10.45 51.08 2007 -0.466 0.047 0.308 0.004 0.000 -0.10800 - 10.45 51.08 2008 -0.436 0.044 0.350 0.009 0.000 -0.03323 - 10.45 51.08 2009 -0.442 0.044 0.321 0.003 0.000 -0.07400 - 10.45 51.08 2010 -0.408 0.041 0.280 0.009 0.000 -0.07845 - 10.45 51.08 2011 -0.496 0.050 0.343 0.016 0.000 -0.08694 - 10.45 51.08 2012 -0.444 0.044 0.323 0.003 0.000 -0.07385 diff --git a/rLPJGUESS/inst/extdata/outputsForTests/run_ifdisturb/outDirectory/clitter.out b/rLPJGUESS/inst/extdata/outputsForTests/run_ifdisturb/outDirectory/clitter.out deleted file mode 100644 index 69eec88..0000000 --- a/rLPJGUESS/inst/extdata/outputsForTests/run_ifdisturb/outDirectory/clitter.out +++ /dev/null @@ -1,63 +0,0 @@ - Lon Lat Year Abi_alb BES Bet_pen Bet_pub Car_bet Cor_ave Fag_syl Fra_exc Jun_oxy MRS Pic_abi Pic_sit Pin_syl Pin_hal Pop_tre Que_coc Que_ile Que_pub Que_rob Til_cor Ulm_gla C3_gr C4_gr Total - 10.45 51.08 1951 0.000 0.000 0.000 0.000 0.000 0.000 0.132 0.000 0.000 0.000 0.067 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.199 - 10.45 51.08 1952 0.000 0.000 0.000 0.000 0.000 0.000 0.136 0.000 0.000 0.000 0.260 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.396 - 10.45 51.08 1953 0.000 0.000 0.000 0.000 0.000 0.000 0.140 0.000 0.000 0.000 0.051 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.192 - 10.45 51.08 1954 0.000 0.000 0.000 0.000 0.000 0.000 0.146 0.000 0.000 0.000 0.054 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.199 - 10.45 51.08 1955 0.000 0.000 0.000 0.000 0.000 0.000 0.148 0.000 0.000 0.000 0.055 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.203 - 10.45 51.08 1956 0.000 0.000 0.000 0.000 0.000 0.000 0.149 0.000 0.000 0.000 0.063 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.212 - 10.45 51.08 1957 0.000 0.000 0.000 0.000 0.000 0.000 0.152 0.000 0.000 0.000 0.055 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.207 - 10.45 51.08 1958 0.000 0.000 0.000 0.000 0.000 0.000 0.155 0.000 0.000 0.000 0.056 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.210 - 10.45 51.08 1959 0.000 0.000 0.000 0.000 0.000 0.000 0.155 0.000 0.000 0.000 0.054 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.209 - 10.45 51.08 1960 0.000 0.000 0.000 0.000 0.000 0.000 0.161 0.000 0.000 0.000 0.054 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.215 - 10.45 51.08 1961 0.000 0.000 0.000 0.000 0.000 0.000 0.161 0.000 0.000 0.000 0.074 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.235 - 10.45 51.08 1962 0.000 0.000 0.000 0.000 0.000 0.000 0.163 0.000 0.000 0.000 0.052 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.216 - 10.45 51.08 1963 0.000 0.000 0.000 0.000 0.000 0.000 0.167 0.000 0.000 0.000 0.067 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.234 - 10.45 51.08 1964 0.000 0.000 0.000 0.000 0.000 0.000 0.166 0.000 0.000 0.000 0.055 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.221 - 10.45 51.08 1965 0.000 0.000 0.000 0.000 0.000 0.000 0.169 0.000 0.000 0.000 0.048 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.217 - 10.45 51.08 1966 0.000 0.000 0.000 0.000 0.000 0.000 0.169 0.000 0.000 0.000 0.049 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.218 - 10.45 51.08 1967 0.000 0.000 0.000 0.000 0.000 0.000 0.172 0.000 0.000 0.000 0.054 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.225 - 10.45 51.08 1968 0.000 0.000 0.000 0.000 0.000 0.000 0.171 0.000 0.000 0.000 0.048 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.219 - 10.45 51.08 1969 0.000 0.000 0.000 0.000 0.000 0.000 0.172 0.000 0.000 0.000 0.047 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.218 - 10.45 51.08 1970 0.000 0.000 0.000 0.000 0.000 0.000 0.172 0.000 0.000 0.000 0.066 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.238 - 10.45 51.08 1971 0.000 0.000 0.000 0.000 0.000 0.000 0.170 0.000 0.000 0.000 0.042 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.212 - 10.45 51.08 1972 0.000 0.000 0.000 0.000 0.000 0.000 0.171 0.000 0.000 0.000 0.128 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.298 - 10.45 51.08 1973 0.000 0.000 0.000 0.000 0.000 0.000 0.170 0.000 0.000 0.000 0.040 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.210 - 10.45 51.08 1974 0.000 0.000 0.000 0.000 0.000 0.000 0.169 0.000 0.000 0.000 0.041 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.209 - 10.45 51.08 1975 0.000 0.000 0.000 0.000 0.000 0.000 0.169 0.000 0.000 0.000 3.477 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 3.646 - 10.45 51.08 1976 0.000 0.000 0.000 0.000 0.000 0.000 0.167 0.000 0.000 0.000 0.036 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.203 - 10.45 51.08 1977 0.000 0.000 0.000 0.000 0.000 0.000 0.167 0.000 0.000 0.000 0.036 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.203 - 10.45 51.08 1978 0.000 0.000 0.000 0.000 0.000 0.000 0.167 0.000 0.000 0.000 0.036 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.203 - 10.45 51.08 1979 0.000 0.000 0.000 0.000 0.000 0.000 0.167 0.000 0.000 0.000 0.037 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.203 - 10.45 51.08 1980 0.000 0.000 0.000 0.000 0.000 0.000 0.165 0.000 0.000 0.000 0.048 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.214 - 10.45 51.08 1981 0.000 0.000 0.000 0.000 0.000 0.000 0.249 0.000 0.000 0.000 0.038 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.288 - 10.45 51.08 1982 0.000 0.000 0.000 0.000 0.000 0.000 0.162 0.000 0.000 0.000 0.037 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.199 - 10.45 51.08 1983 0.000 0.000 0.000 0.000 0.000 0.000 0.161 0.000 0.000 0.000 0.039 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.200 - 10.45 51.08 1984 0.000 0.000 0.000 0.000 0.000 0.000 1.283 0.000 0.000 0.000 0.053 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 1.336 - 10.45 51.08 1985 0.000 0.000 0.000 0.000 0.000 0.000 0.139 0.000 0.000 0.000 0.090 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.229 - 10.45 51.08 1986 0.000 0.000 0.000 0.000 0.000 0.000 0.142 0.000 0.000 0.000 0.038 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.180 - 10.45 51.08 1987 0.000 0.000 0.000 0.000 0.000 0.000 0.144 0.000 0.000 0.000 0.039 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.182 - 10.45 51.08 1988 0.000 0.000 0.000 0.000 0.000 0.000 0.145 0.000 0.000 0.000 0.047 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.192 - 10.45 51.08 1989 0.000 0.000 0.000 0.000 0.000 0.000 0.148 0.000 0.000 0.000 0.076 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.223 - 10.45 51.08 1990 0.000 0.000 0.000 0.000 0.000 0.000 0.151 0.000 0.000 0.000 0.042 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.193 - 10.45 51.08 1991 0.000 0.000 0.000 0.000 0.000 0.000 0.156 0.000 0.000 0.000 0.045 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.201 - 10.45 51.08 1992 0.000 0.000 0.000 0.000 0.000 0.000 0.158 0.000 0.000 0.000 0.045 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.203 - 10.45 51.08 1993 0.000 0.000 0.000 0.000 0.000 0.000 0.157 0.000 0.000 0.000 0.060 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.217 - 10.45 51.08 1994 0.000 0.000 0.000 0.000 0.000 0.000 0.159 0.000 0.000 0.000 0.045 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.204 - 10.45 51.08 1995 0.000 0.000 0.000 0.000 0.000 0.000 0.159 0.000 0.000 0.000 0.045 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.204 - 10.45 51.08 1996 0.000 0.000 0.000 0.000 0.000 0.000 0.158 0.000 0.000 0.000 0.044 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.202 - 10.45 51.08 1997 0.000 0.000 0.000 0.000 0.000 0.000 0.157 0.000 0.000 0.000 0.043 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.200 - 10.45 51.08 1998 0.000 0.000 0.000 0.000 0.000 0.000 0.158 0.000 0.000 0.000 0.044 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.202 - 10.45 51.08 1999 0.000 0.000 0.000 0.000 0.000 0.000 0.159 0.000 0.000 0.000 0.045 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.204 - 10.45 51.08 2000 0.000 0.000 0.000 0.000 0.000 0.000 0.161 0.000 0.000 0.000 0.045 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.207 - 10.45 51.08 2001 0.000 0.000 0.000 0.000 0.000 0.000 0.162 0.000 0.000 0.000 0.046 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.207 - 10.45 51.08 2002 0.000 0.000 0.000 0.000 0.000 0.000 0.162 0.000 0.000 0.000 0.055 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.217 - 10.45 51.08 2003 0.000 0.000 0.000 0.000 0.000 0.000 0.161 0.000 0.000 0.000 0.054 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.215 - 10.45 51.08 2004 0.000 0.000 0.000 0.000 0.000 0.000 0.161 0.000 0.000 0.000 0.044 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.205 - 10.45 51.08 2005 0.000 0.000 0.000 0.000 0.000 0.000 0.164 0.000 0.000 0.000 0.054 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.218 - 10.45 51.08 2006 0.000 0.000 0.000 0.000 0.000 0.000 0.167 0.000 0.000 0.000 0.043 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.210 - 10.45 51.08 2007 0.000 0.000 0.000 0.000 0.000 0.000 0.167 0.000 0.000 0.000 0.042 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.208 - 10.45 51.08 2008 0.000 0.000 0.000 0.000 0.000 0.000 0.167 0.000 0.000 0.000 0.049 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.217 - 10.45 51.08 2009 0.000 0.000 0.000 0.000 0.000 0.000 0.168 0.000 0.000 0.000 0.044 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.212 - 10.45 51.08 2010 0.000 0.000 0.000 0.000 0.000 0.000 0.169 0.000 0.000 0.000 0.062 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.231 - 10.45 51.08 2011 0.000 0.000 0.000 0.000 0.000 0.000 0.168 0.000 0.000 0.000 0.062 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.230 - 10.45 51.08 2012 0.000 0.000 0.000 0.000 0.000 0.000 0.171 0.000 0.000 0.000 0.043 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.214 diff --git a/rLPJGUESS/inst/extdata/outputsForTests/run_ifdisturb/outDirectory/cmass.out b/rLPJGUESS/inst/extdata/outputsForTests/run_ifdisturb/outDirectory/cmass.out deleted file mode 100644 index 94406ad..0000000 --- a/rLPJGUESS/inst/extdata/outputsForTests/run_ifdisturb/outDirectory/cmass.out +++ /dev/null @@ -1,63 +0,0 @@ - Lon Lat Year Abi_alb BES Bet_pen Bet_pub Car_bet Cor_ave Fag_syl Fra_exc Jun_oxy MRS Pic_abi Pic_sit Pin_syl Pin_hal Pop_tre Que_coc Que_ile Que_pub Que_rob Til_cor Ulm_gla C3_gr C4_gr Total - 10.45 51.08 1951 0.000 0.000 0.000 0.000 0.000 0.000 6.296 0.000 0.000 0.000 4.403 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 10.699 - 10.45 51.08 1952 0.000 0.000 0.000 0.000 0.000 0.000 6.470 0.000 0.000 0.000 4.208 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 10.678 - 10.45 51.08 1953 0.000 0.000 0.000 0.000 0.000 0.000 6.681 0.000 0.000 0.000 4.236 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 10.917 - 10.45 51.08 1954 0.000 0.000 0.000 0.000 0.000 0.000 6.834 0.000 0.000 0.000 4.261 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 11.095 - 10.45 51.08 1955 0.000 0.000 0.000 0.000 0.000 0.000 6.980 0.000 0.000 0.000 4.275 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 11.255 - 10.45 51.08 1956 0.000 0.000 0.000 0.000 0.000 0.000 7.141 0.000 0.000 0.000 4.288 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 11.429 - 10.45 51.08 1957 0.000 0.000 0.000 0.000 0.000 0.000 7.314 0.000 0.000 0.000 4.303 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 11.617 - 10.45 51.08 1958 0.000 0.000 0.000 0.000 0.000 0.000 7.470 0.000 0.000 0.000 4.306 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 11.776 - 10.45 51.08 1959 0.000 0.000 0.000 0.000 0.000 0.000 7.678 0.000 0.000 0.000 4.320 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 11.998 - 10.45 51.08 1960 0.000 0.000 0.000 0.000 0.000 0.000 7.835 0.000 0.000 0.000 4.332 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 12.168 - 10.45 51.08 1961 0.000 0.000 0.000 0.000 0.000 0.000 8.009 0.000 0.000 0.000 4.323 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 12.332 - 10.45 51.08 1962 0.000 0.000 0.000 0.000 0.000 0.000 8.180 0.000 0.000 0.000 4.335 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 12.515 - 10.45 51.08 1963 0.000 0.000 0.000 0.000 0.000 0.000 8.347 0.000 0.000 0.000 4.325 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 12.672 - 10.45 51.08 1964 0.000 0.000 0.000 0.000 0.000 0.000 8.537 0.000 0.000 0.000 4.326 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 12.863 - 10.45 51.08 1965 0.000 0.000 0.000 0.000 0.000 0.000 8.697 0.000 0.000 0.000 4.342 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 13.040 - 10.45 51.08 1966 0.000 0.000 0.000 0.000 0.000 0.000 8.888 0.000 0.000 0.000 4.350 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 13.237 - 10.45 51.08 1967 0.000 0.000 0.000 0.000 0.000 0.000 9.034 0.000 0.000 0.000 4.357 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 13.391 - 10.45 51.08 1968 0.000 0.000 0.000 0.000 0.000 0.000 9.202 0.000 0.000 0.000 4.363 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 13.565 - 10.45 51.08 1969 0.000 0.000 0.000 0.000 0.000 0.000 9.341 0.000 0.000 0.000 4.361 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 13.702 - 10.45 51.08 1970 0.000 0.000 0.000 0.000 0.000 0.000 9.477 0.000 0.000 0.000 4.340 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 13.817 - 10.45 51.08 1971 0.000 0.000 0.000 0.000 0.000 0.000 9.631 0.000 0.000 0.000 4.350 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 13.981 - 10.45 51.08 1972 0.000 0.000 0.000 0.000 0.000 0.000 9.776 0.000 0.000 0.000 4.279 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 14.055 - 10.45 51.08 1973 0.000 0.000 0.000 0.000 0.000 0.000 9.907 0.000 0.000 0.000 4.289 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 14.196 - 10.45 51.08 1974 0.000 0.000 0.000 0.000 0.000 0.000 10.070 0.000 0.000 0.000 4.304 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 14.374 - 10.45 51.08 1975 0.000 0.000 0.000 0.000 0.000 0.000 10.188 0.000 0.000 0.000 0.878 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 11.067 - 10.45 51.08 1976 0.000 0.000 0.000 0.000 0.000 0.000 10.330 0.000 0.000 0.000 0.882 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 11.212 - 10.45 51.08 1977 0.000 0.000 0.000 0.000 0.000 0.000 10.478 0.000 0.000 0.000 0.889 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 11.367 - 10.45 51.08 1978 0.000 0.000 0.000 0.000 0.000 0.000 10.623 0.000 0.000 0.000 0.901 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 11.524 - 10.45 51.08 1979 0.000 0.000 0.000 0.000 0.000 0.000 10.747 0.000 0.000 0.000 0.913 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 11.660 - 10.45 51.08 1980 0.000 0.000 0.000 0.000 0.000 0.000 10.873 0.000 0.000 0.000 0.919 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 11.793 - 10.45 51.08 1981 0.000 0.000 0.000 0.000 0.000 0.000 10.962 0.000 0.000 0.000 0.923 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 11.885 - 10.45 51.08 1982 0.000 0.000 0.000 0.000 0.000 0.000 11.091 0.000 0.000 0.000 0.937 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 12.027 - 10.45 51.08 1983 0.000 0.000 0.000 0.000 0.000 0.000 11.259 0.000 0.000 0.000 0.942 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 12.200 - 10.45 51.08 1984 0.000 0.000 0.000 0.000 0.000 0.000 10.244 0.000 0.000 0.000 0.936 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 11.180 - 10.45 51.08 1985 0.000 0.000 0.000 0.000 0.000 0.000 10.430 0.000 0.000 0.000 0.900 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 11.330 - 10.45 51.08 1986 0.000 0.000 0.000 0.000 0.000 0.000 10.589 0.000 0.000 0.000 0.913 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 11.502 - 10.45 51.08 1987 0.000 0.000 0.000 0.000 0.000 0.000 10.748 0.000 0.000 0.000 0.928 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 11.676 - 10.45 51.08 1988 0.000 0.000 0.000 0.000 0.000 0.000 10.926 0.000 0.000 0.000 0.941 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 11.867 - 10.45 51.08 1989 0.000 0.000 0.000 0.000 0.000 0.000 11.138 0.000 0.000 0.000 0.927 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 12.065 - 10.45 51.08 1990 0.000 0.000 0.000 0.000 0.000 0.000 11.367 0.000 0.000 0.000 0.952 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 12.319 - 10.45 51.08 1991 0.000 0.000 0.000 0.000 0.000 0.000 11.540 0.000 0.000 0.000 0.962 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 12.503 - 10.45 51.08 1992 0.000 0.000 0.000 0.000 0.000 0.000 11.668 0.000 0.000 0.000 0.979 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 12.647 - 10.45 51.08 1993 0.000 0.000 0.000 0.000 0.000 0.000 11.861 0.000 0.000 0.000 0.973 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 12.834 - 10.45 51.08 1994 0.000 0.000 0.000 0.000 0.000 0.000 12.006 0.000 0.000 0.000 0.980 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 12.986 - 10.45 51.08 1995 0.000 0.000 0.000 0.000 0.000 0.000 12.138 0.000 0.000 0.000 0.985 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 13.123 - 10.45 51.08 1996 0.000 0.000 0.000 0.000 0.000 0.000 12.272 0.000 0.000 0.000 0.988 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 13.260 - 10.45 51.08 1997 0.000 0.000 0.000 0.000 0.000 0.000 12.438 0.000 0.000 0.000 1.005 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 13.443 - 10.45 51.08 1998 0.000 0.000 0.000 0.000 0.000 0.000 12.617 0.000 0.000 0.000 1.015 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 13.632 - 10.45 51.08 1999 0.000 0.000 0.000 0.000 0.000 0.000 12.806 0.000 0.000 0.000 1.028 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 13.833 - 10.45 51.08 2000 0.000 0.000 0.000 0.000 0.000 0.000 12.962 0.000 0.000 0.000 1.039 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 14.001 - 10.45 51.08 2001 0.000 0.000 0.000 0.000 0.000 0.000 13.131 0.000 0.000 0.000 1.045 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 14.176 - 10.45 51.08 2002 0.000 0.000 0.000 0.000 0.000 0.000 13.268 0.000 0.000 0.000 1.041 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 14.309 - 10.45 51.08 2003 0.000 0.000 0.000 0.000 0.000 0.000 13.397 0.000 0.000 0.000 1.041 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 14.438 - 10.45 51.08 2004 0.000 0.000 0.000 0.000 0.000 0.000 13.629 0.000 0.000 0.000 1.053 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 14.682 - 10.45 51.08 2005 0.000 0.000 0.000 0.000 0.000 0.000 13.832 0.000 0.000 0.000 1.052 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 14.884 - 10.45 51.08 2006 0.000 0.000 0.000 0.000 0.000 0.000 13.996 0.000 0.000 0.000 1.052 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 15.048 - 10.45 51.08 2007 0.000 0.000 0.000 0.000 0.000 0.000 14.182 0.000 0.000 0.000 1.077 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 15.260 - 10.45 51.08 2008 0.000 0.000 0.000 0.000 0.000 0.000 14.354 0.000 0.000 0.000 1.081 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 15.435 - 10.45 51.08 2009 0.000 0.000 0.000 0.000 0.000 0.000 14.530 0.000 0.000 0.000 1.091 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 15.621 - 10.45 51.08 2010 0.000 0.000 0.000 0.000 0.000 0.000 14.683 0.000 0.000 0.000 1.075 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 15.757 - 10.45 51.08 2011 0.000 0.000 0.000 0.000 0.000 0.000 14.903 0.000 0.000 0.000 1.071 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 15.973 - 10.45 51.08 2012 0.000 0.000 0.000 0.000 0.000 0.000 15.078 0.000 0.000 0.000 1.081 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 16.159 diff --git a/rLPJGUESS/inst/extdata/outputsForTests/run_ifdisturb/outDirectory/cpool.out b/rLPJGUESS/inst/extdata/outputsForTests/run_ifdisturb/outDirectory/cpool.out deleted file mode 100644 index 0112613..0000000 --- a/rLPJGUESS/inst/extdata/outputsForTests/run_ifdisturb/outDirectory/cpool.out +++ /dev/null @@ -1,63 +0,0 @@ - Lon Lat Year VegC LitterC SoilC Total - 10.45 51.08 1951 10.699 8.672 10.526 29.896 - 10.45 51.08 1952 10.678 8.561 10.546 29.785 - 10.45 51.08 1953 10.917 8.228 10.559 29.704 - 10.45 51.08 1954 11.095 8.007 10.576 29.679 - 10.45 51.08 1955 11.255 7.822 10.597 29.673 - 10.45 51.08 1956 11.429 7.661 10.618 29.707 - 10.45 51.08 1957 11.617 7.444 10.632 29.692 - 10.45 51.08 1958 11.776 7.247 10.643 29.666 - 10.45 51.08 1959 11.998 6.954 10.644 29.596 - 10.45 51.08 1960 12.168 6.792 10.652 29.612 - 10.45 51.08 1961 12.332 6.594 10.654 29.580 - 10.45 51.08 1962 12.515 6.424 10.661 29.600 - 10.45 51.08 1963 12.672 6.298 10.669 29.639 - 10.45 51.08 1964 12.863 6.112 10.668 29.642 - 10.45 51.08 1965 13.040 5.998 10.677 29.715 - 10.45 51.08 1966 13.237 5.864 10.683 29.784 - 10.45 51.08 1967 13.391 5.718 10.682 29.791 - 10.45 51.08 1968 13.565 5.580 10.682 29.827 - 10.45 51.08 1969 13.702 5.441 10.683 29.827 - 10.45 51.08 1970 13.817 5.350 10.687 29.854 - 10.45 51.08 1971 13.981 5.158 10.677 29.816 - 10.45 51.08 1972 14.055 5.166 10.681 29.902 - 10.45 51.08 1973 14.196 5.012 10.674 29.883 - 10.45 51.08 1974 14.374 4.908 10.671 29.953 - 10.45 51.08 1975 11.067 8.194 10.657 29.917 - 10.45 51.08 1976 11.212 7.928 10.653 29.792 - 10.45 51.08 1977 11.367 7.780 10.665 29.812 - 10.45 51.08 1978 11.524 7.609 10.675 29.808 - 10.45 51.08 1979 11.660 7.431 10.679 29.771 - 10.45 51.08 1980 11.793 7.263 10.682 29.738 - 10.45 51.08 1981 11.885 7.187 10.687 29.759 - 10.45 51.08 1982 12.027 6.883 10.670 29.581 - 10.45 51.08 1983 12.200 6.669 10.660 29.529 - 10.45 51.08 1984 11.180 7.698 10.667 29.545 - 10.45 51.08 1985 11.330 7.490 10.680 29.500 - 10.45 51.08 1986 11.502 7.282 10.684 29.467 - 10.45 51.08 1987 11.676 7.140 10.694 29.510 - 10.45 51.08 1988 11.867 6.888 10.687 29.443 - 10.45 51.08 1989 12.065 6.675 10.676 29.416 - 10.45 51.08 1990 12.319 6.449 10.667 29.435 - 10.45 51.08 1991 12.503 6.240 10.657 29.399 - 10.45 51.08 1992 12.647 6.055 10.649 29.350 - 10.45 51.08 1993 12.834 5.928 10.650 29.411 - 10.45 51.08 1994 12.986 5.760 10.643 29.389 - 10.45 51.08 1995 13.123 5.625 10.641 29.389 - 10.45 51.08 1996 13.260 5.536 10.648 29.445 - 10.45 51.08 1997 13.443 5.367 10.640 29.451 - 10.45 51.08 1998 13.632 5.232 10.631 29.494 - 10.45 51.08 1999 13.833 5.084 10.617 29.534 - 10.45 51.08 2000 14.001 4.935 10.600 29.536 - 10.45 51.08 2001 14.176 4.807 10.589 29.572 - 10.45 51.08 2002 14.309 4.717 10.585 29.611 - 10.45 51.08 2003 14.438 4.547 10.562 29.548 - 10.45 51.08 2004 14.682 4.423 10.547 29.653 - 10.45 51.08 2005 14.884 4.324 10.534 29.741 - 10.45 51.08 2006 15.048 4.208 10.518 29.775 - 10.45 51.08 2007 15.260 4.114 10.509 29.883 - 10.45 51.08 2008 15.435 3.993 10.487 29.916 - 10.45 51.08 2009 15.621 3.895 10.473 29.990 - 10.45 51.08 2010 15.757 3.841 10.470 30.068 - 10.45 51.08 2011 15.973 3.730 10.452 30.155 - 10.45 51.08 2012 16.159 3.636 10.434 30.229 diff --git a/rLPJGUESS/inst/extdata/outputsForTests/run_ifdisturb/outDirectory/cton_leaf.out b/rLPJGUESS/inst/extdata/outputsForTests/run_ifdisturb/outDirectory/cton_leaf.out deleted file mode 100644 index 9280492..0000000 --- a/rLPJGUESS/inst/extdata/outputsForTests/run_ifdisturb/outDirectory/cton_leaf.out +++ /dev/null @@ -1,63 +0,0 @@ - Lon Lat Year Abi_alb BES Bet_pen Bet_pub Car_bet Cor_ave Fag_syl Fra_exc Jun_oxy MRS Pic_abi Pic_sit Pin_syl Pin_hal Pop_tre Que_coc Que_ile Que_pub Que_rob Til_cor Ulm_gla C3_gr C4_gr Total - 10.45 51.08 1951 0.0 0.0 0.0 0.0 0.0 0.0 23.6 0.0 0.0 0.0 56.4 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 30.7 - 10.45 51.08 1952 0.0 0.0 0.0 0.0 0.0 0.0 23.6 0.0 0.0 0.0 56.4 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 30.2 - 10.45 51.08 1953 0.0 0.0 0.0 0.0 0.0 0.0 23.6 0.0 0.0 0.0 56.4 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 30.2 - 10.45 51.08 1954 0.0 0.0 0.0 0.0 0.0 0.0 23.6 0.0 0.0 0.0 56.4 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 30.4 - 10.45 51.08 1955 0.0 0.0 0.0 0.0 0.0 0.0 23.6 0.0 0.0 0.0 56.4 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 30.3 - 10.45 51.08 1956 0.0 0.0 0.0 0.0 0.0 0.0 23.6 0.0 0.0 0.0 56.4 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 30.2 - 10.45 51.08 1957 0.0 0.0 0.0 0.0 0.0 0.0 23.6 0.0 0.0 0.0 56.4 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 30.1 - 10.45 51.08 1958 0.0 0.0 0.0 0.0 0.0 0.0 23.6 0.0 0.0 0.0 56.4 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 29.9 - 10.45 51.08 1959 0.0 0.0 0.0 0.0 0.0 0.0 23.6 0.0 0.0 0.0 56.4 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 29.8 - 10.45 51.08 1960 0.0 0.0 0.0 0.0 0.0 0.0 23.6 0.0 0.0 0.0 56.4 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 29.7 - 10.45 51.08 1961 0.0 0.0 0.0 0.0 0.0 0.0 23.6 0.0 0.0 0.0 56.4 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 29.5 - 10.45 51.08 1962 0.0 0.0 0.0 0.0 0.0 0.0 23.6 0.0 0.0 0.0 56.4 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 29.5 - 10.45 51.08 1963 0.0 0.0 0.0 0.0 0.0 0.0 23.6 0.0 0.0 0.0 56.4 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 29.3 - 10.45 51.08 1964 0.0 0.0 0.0 0.0 0.0 0.0 23.6 0.0 0.0 0.0 56.4 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 29.0 - 10.45 51.08 1965 0.0 0.0 0.0 0.0 0.0 0.0 23.6 0.0 0.0 0.0 56.4 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 29.1 - 10.45 51.08 1966 0.0 0.0 0.0 0.0 0.0 0.0 23.6 0.0 0.0 0.0 56.4 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 28.9 - 10.45 51.08 1967 0.0 0.0 0.0 0.0 0.0 0.0 23.6 0.0 0.0 0.0 56.4 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 28.9 - 10.45 51.08 1968 0.0 0.0 0.0 0.0 0.0 0.0 23.6 0.0 0.0 0.0 56.4 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 28.8 - 10.45 51.08 1969 0.0 0.0 0.0 0.0 0.0 0.0 23.6 0.0 0.0 0.0 56.4 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 28.6 - 10.45 51.08 1970 0.0 0.0 0.0 0.0 0.0 0.0 23.6 0.0 0.0 0.0 56.4 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 28.4 - 10.45 51.08 1971 0.0 0.0 0.0 0.0 0.0 0.0 23.6 0.0 0.0 0.0 56.4 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 28.4 - 10.45 51.08 1972 0.0 0.0 0.0 0.0 0.0 0.0 23.6 0.0 0.0 0.0 56.4 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 28.3 - 10.45 51.08 1973 0.0 0.0 0.0 0.0 0.0 0.0 23.6 0.0 0.0 0.0 56.4 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 28.3 - 10.45 51.08 1974 0.0 0.0 0.0 0.0 0.0 0.0 23.6 0.0 0.0 0.0 56.4 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 28.3 - 10.45 51.08 1975 0.0 0.0 0.0 0.0 0.0 0.0 23.6 0.0 0.0 0.0 56.4 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 27.9 - 10.45 51.08 1976 0.0 0.0 0.0 0.0 0.0 0.0 23.6 0.0 0.0 0.0 56.4 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 27.9 - 10.45 51.08 1977 0.0 0.0 0.0 0.0 0.0 0.0 23.6 0.0 0.0 0.0 56.4 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 27.9 - 10.45 51.08 1978 0.0 0.0 0.0 0.0 0.0 0.0 23.6 0.0 0.0 0.0 56.4 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 27.9 - 10.45 51.08 1979 0.0 0.0 0.0 0.0 0.0 0.0 23.6 0.0 0.0 0.0 56.4 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 28.1 - 10.45 51.08 1980 0.0 0.0 0.0 0.0 0.0 0.0 23.6 0.0 0.0 0.0 56.4 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 28.2 - 10.45 51.08 1981 0.0 0.0 0.0 0.0 0.0 0.0 23.6 0.0 0.0 0.0 56.4 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 28.1 - 10.45 51.08 1982 0.0 0.0 0.0 0.0 0.0 0.0 23.6 0.0 0.0 0.0 56.4 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 28.3 - 10.45 51.08 1983 0.0 0.0 0.0 0.0 0.0 0.0 23.6 0.0 0.0 0.0 56.4 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 28.2 - 10.45 51.08 1984 0.0 0.0 0.0 0.0 0.0 0.0 23.6 0.0 0.0 0.0 56.4 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 28.8 - 10.45 51.08 1985 0.0 0.0 0.0 0.0 0.0 0.0 23.6 0.0 0.0 0.0 56.4 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 28.7 - 10.45 51.08 1986 0.0 0.0 0.0 0.0 0.0 0.0 23.6 0.0 0.0 0.0 56.4 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 28.8 - 10.45 51.08 1987 0.0 0.0 0.0 0.0 0.0 0.0 23.6 0.0 0.0 0.0 56.4 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 28.8 - 10.45 51.08 1988 0.0 0.0 0.0 0.0 0.0 0.0 23.6 0.0 0.0 0.0 56.4 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 28.9 - 10.45 51.08 1989 0.0 0.0 0.0 0.0 0.0 0.0 23.6 0.0 0.0 0.0 56.4 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 28.9 - 10.45 51.08 1990 0.0 0.0 0.0 0.0 0.0 0.0 23.6 0.0 0.0 0.0 56.4 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 29.0 - 10.45 51.08 1991 0.0 0.0 0.0 0.0 0.0 0.0 23.6 0.0 0.0 0.0 56.4 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 29.0 - 10.45 51.08 1992 0.0 0.0 0.0 0.0 0.0 0.0 23.6 0.0 0.0 0.0 56.4 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 29.2 - 10.45 51.08 1993 0.0 0.0 0.0 0.0 0.0 0.0 23.6 0.0 0.0 0.0 56.4 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 29.0 - 10.45 51.08 1994 0.0 0.0 0.0 0.0 0.0 0.0 23.6 0.0 0.0 0.0 56.4 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 29.0 - 10.45 51.08 1995 0.0 0.0 0.0 0.0 0.0 0.0 23.6 0.0 0.0 0.0 56.4 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 28.9 - 10.45 51.08 1996 0.0 0.0 0.0 0.0 0.0 0.0 23.6 0.0 0.0 0.0 56.4 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 28.8 - 10.45 51.08 1997 0.0 0.0 0.0 0.0 0.0 0.0 23.6 0.0 0.0 0.0 56.4 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 29.0 - 10.45 51.08 1998 0.0 0.0 0.0 0.0 0.0 0.0 23.6 0.0 0.0 0.0 56.4 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 28.9 - 10.45 51.08 1999 0.0 0.0 0.0 0.0 0.0 0.0 23.6 0.0 0.0 0.0 56.4 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 28.9 - 10.45 51.08 2000 0.0 0.0 0.0 0.0 0.0 0.0 23.6 0.0 0.0 0.0 56.4 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 29.0 - 10.45 51.08 2001 0.0 0.0 0.0 0.0 0.0 0.0 23.6 0.0 0.0 0.0 56.4 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 28.9 - 10.45 51.08 2002 0.0 0.0 0.0 0.0 0.0 0.0 23.6 0.0 0.0 0.0 56.4 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 28.8 - 10.45 51.08 2003 0.0 0.0 0.0 0.0 0.0 0.0 23.6 0.0 0.0 0.0 56.4 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 28.8 - 10.45 51.08 2004 0.0 0.0 0.0 0.0 0.0 0.0 23.6 0.0 0.0 0.0 56.4 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 28.7 - 10.45 51.08 2005 0.0 0.0 0.0 0.0 0.0 0.0 23.6 0.0 0.0 0.0 56.4 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 28.6 - 10.45 51.08 2006 0.0 0.0 0.0 0.0 0.0 0.0 23.6 0.0 0.0 0.0 56.4 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 28.5 - 10.45 51.08 2007 0.0 0.0 0.0 0.0 0.0 0.0 23.6 0.0 0.0 0.0 56.4 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 28.7 - 10.45 51.08 2008 0.0 0.0 0.0 0.0 0.0 0.0 23.6 0.0 0.0 0.0 56.4 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 28.6 - 10.45 51.08 2009 0.0 0.0 0.0 0.0 0.0 0.0 23.6 0.0 0.0 0.0 56.4 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 28.6 - 10.45 51.08 2010 0.0 0.0 0.0 0.0 0.0 0.0 23.6 0.0 0.0 0.0 56.4 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 28.4 - 10.45 51.08 2011 0.0 0.0 0.0 0.0 0.0 0.0 23.6 0.0 0.0 0.0 56.4 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 28.4 - 10.45 51.08 2012 0.0 0.0 0.0 0.0 0.0 0.0 23.6 0.0 0.0 0.0 56.4 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 28.4 diff --git a/rLPJGUESS/inst/extdata/outputsForTests/run_ifdisturb/outDirectory/dens.out b/rLPJGUESS/inst/extdata/outputsForTests/run_ifdisturb/outDirectory/dens.out deleted file mode 100644 index 935bb38..0000000 --- a/rLPJGUESS/inst/extdata/outputsForTests/run_ifdisturb/outDirectory/dens.out +++ /dev/null @@ -1,63 +0,0 @@ - Lon Lat Year Abi_alb BES Bet_pen Bet_pub Car_bet Cor_ave Fag_syl Fra_exc Jun_oxy MRS Pic_abi Pic_sit Pin_syl Pin_hal Pop_tre Que_coc Que_ile Que_pub Que_rob Til_cor Ulm_gla C3_gr C4_gr Total - 10.45 51.08 1951 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0140 0.0000 0.0000 0.0000 0.0680 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0820 - 10.45 51.08 1952 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0150 0.0000 0.0000 0.0000 0.0670 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0820 - 10.45 51.08 1953 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0170 0.0000 0.0000 0.0000 0.0670 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0840 - 10.45 51.08 1954 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0170 0.0000 0.0000 0.0000 0.0670 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0840 - 10.45 51.08 1955 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0170 0.0000 0.0000 0.0000 0.0670 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0840 - 10.45 51.08 1956 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0170 0.0000 0.0000 0.0000 0.0650 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0820 - 10.45 51.08 1957 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0170 0.0000 0.0000 0.0000 0.0650 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0820 - 10.45 51.08 1958 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0170 0.0000 0.0000 0.0000 0.0650 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0820 - 10.45 51.08 1959 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0170 0.0000 0.0000 0.0000 0.0650 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0820 - 10.45 51.08 1960 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0170 0.0000 0.0000 0.0000 0.0650 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0820 - 10.45 51.08 1961 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0170 0.0000 0.0000 0.0000 0.0640 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0810 - 10.45 51.08 1962 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0170 0.0000 0.0000 0.0000 0.0640 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0810 - 10.45 51.08 1963 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0160 0.0000 0.0000 0.0000 0.0630 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0790 - 10.45 51.08 1964 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0160 0.0000 0.0000 0.0000 0.0630 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0790 - 10.45 51.08 1965 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0160 0.0000 0.0000 0.0000 0.0630 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0790 - 10.45 51.08 1966 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0160 0.0000 0.0000 0.0000 0.0630 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0790 - 10.45 51.08 1967 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0160 0.0000 0.0000 0.0000 0.0620 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0780 - 10.45 51.08 1968 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0160 0.0000 0.0000 0.0000 0.0620 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0780 - 10.45 51.08 1969 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0160 0.0000 0.0000 0.0000 0.0620 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0780 - 10.45 51.08 1970 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0160 0.0000 0.0000 0.0000 0.0610 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0770 - 10.45 51.08 1971 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0160 0.0000 0.0000 0.0000 0.0610 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0770 - 10.45 51.08 1972 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0160 0.0000 0.0000 0.0000 0.0630 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0790 - 10.45 51.08 1973 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0160 0.0000 0.0000 0.0000 0.0630 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0790 - 10.45 51.08 1974 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0160 0.0000 0.0000 0.0000 0.0630 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0790 - 10.45 51.08 1975 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0160 0.0000 0.0000 0.0000 0.0610 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0770 - 10.45 51.08 1976 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0160 0.0000 0.0000 0.0000 0.0610 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0770 - 10.45 51.08 1977 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0160 0.0000 0.0000 0.0000 0.0610 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0770 - 10.45 51.08 1978 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0160 0.0000 0.0000 0.0000 0.0610 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0770 - 10.45 51.08 1979 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0160 0.0000 0.0000 0.0000 0.0630 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0790 - 10.45 51.08 1980 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0160 0.0000 0.0000 0.0000 0.0610 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0770 - 10.45 51.08 1981 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0150 0.0000 0.0000 0.0000 0.0610 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0760 - 10.45 51.08 1982 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0150 0.0000 0.0000 0.0000 0.0610 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0760 - 10.45 51.08 1983 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0150 0.0000 0.0000 0.0000 0.0610 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0760 - 10.45 51.08 1984 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0140 0.0000 0.0000 0.0000 0.0630 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0770 - 10.45 51.08 1985 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0140 0.0000 0.0000 0.0000 0.0620 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0760 - 10.45 51.08 1986 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0140 0.0000 0.0000 0.0000 0.0620 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0760 - 10.45 51.08 1987 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0140 0.0000 0.0000 0.0000 0.0630 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0770 - 10.45 51.08 1988 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0140 0.0000 0.0000 0.0000 0.0620 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0760 - 10.45 51.08 1989 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0140 0.0000 0.0000 0.0000 0.0630 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0770 - 10.45 51.08 1990 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0140 0.0000 0.0000 0.0000 0.0650 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0790 - 10.45 51.08 1991 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0140 0.0000 0.0000 0.0000 0.0650 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0790 - 10.45 51.08 1992 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0140 0.0000 0.0000 0.0000 0.0650 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0790 - 10.45 51.08 1993 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0140 0.0000 0.0000 0.0000 0.0640 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0780 - 10.45 51.08 1994 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0140 0.0000 0.0000 0.0000 0.0650 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0790 - 10.45 51.08 1995 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0140 0.0000 0.0000 0.0000 0.0650 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0790 - 10.45 51.08 1996 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0140 0.0000 0.0000 0.0000 0.0660 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0800 - 10.45 51.08 1997 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0140 0.0000 0.0000 0.0000 0.0660 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0800 - 10.45 51.08 1998 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0140 0.0000 0.0000 0.0000 0.0670 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0810 - 10.45 51.08 1999 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0150 0.0000 0.0000 0.0000 0.0670 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0820 - 10.45 51.08 2000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0150 0.0000 0.0000 0.0000 0.0680 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0830 - 10.45 51.08 2001 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0150 0.0000 0.0000 0.0000 0.0680 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0830 - 10.45 51.08 2002 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0150 0.0000 0.0000 0.0000 0.0670 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0820 - 10.45 51.08 2003 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0150 0.0000 0.0000 0.0000 0.0660 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0810 - 10.45 51.08 2004 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0150 0.0000 0.0000 0.0000 0.0700 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0850 - 10.45 51.08 2005 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0150 0.0000 0.0000 0.0000 0.0700 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0850 - 10.45 51.08 2006 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0150 0.0000 0.0000 0.0000 0.0700 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0850 - 10.45 51.08 2007 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0150 0.0000 0.0000 0.0000 0.0700 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0850 - 10.45 51.08 2008 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0150 0.0000 0.0000 0.0000 0.0680 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0830 - 10.45 51.08 2009 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0150 0.0000 0.0000 0.0000 0.0680 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0830 - 10.45 51.08 2010 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0150 0.0000 0.0000 0.0000 0.0670 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0820 - 10.45 51.08 2011 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0150 0.0000 0.0000 0.0000 0.0670 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0820 - 10.45 51.08 2012 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0150 0.0000 0.0000 0.0000 0.0660 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0810 diff --git a/rLPJGUESS/inst/extdata/outputsForTests/run_ifdisturb/outDirectory/firert.out b/rLPJGUESS/inst/extdata/outputsForTests/run_ifdisturb/outDirectory/firert.out deleted file mode 100644 index 47fcd60..0000000 --- a/rLPJGUESS/inst/extdata/outputsForTests/run_ifdisturb/outDirectory/firert.out +++ /dev/null @@ -1,63 +0,0 @@ - Lon Lat Year FireRT - 10.45 51.08 1951 1000.0 - 10.45 51.08 1952 161.9 - 10.45 51.08 1953 602.2 - 10.45 51.08 1954 1000.0 - 10.45 51.08 1955 1000.0 - 10.45 51.08 1956 1000.0 - 10.45 51.08 1957 1000.0 - 10.45 51.08 1958 1000.0 - 10.45 51.08 1959 121.9 - 10.45 51.08 1960 925.7 - 10.45 51.08 1961 390.5 - 10.45 51.08 1962 317.4 - 10.45 51.08 1963 1000.0 - 10.45 51.08 1964 535.0 - 10.45 51.08 1965 1000.0 - 10.45 51.08 1966 1000.0 - 10.45 51.08 1967 1000.0 - 10.45 51.08 1968 1000.0 - 10.45 51.08 1969 246.0 - 10.45 51.08 1970 1000.0 - 10.45 51.08 1971 138.2 - 10.45 51.08 1972 1000.0 - 10.45 51.08 1973 467.2 - 10.45 51.08 1974 1000.0 - 10.45 51.08 1975 315.2 - 10.45 51.08 1976 138.8 - 10.45 51.08 1977 1000.0 - 10.45 51.08 1978 1000.0 - 10.45 51.08 1979 1000.0 - 10.45 51.08 1980 583.7 - 10.45 51.08 1981 1000.0 - 10.45 51.08 1982 130.6 - 10.45 51.08 1983 290.5 - 10.45 51.08 1984 1000.0 - 10.45 51.08 1985 706.4 - 10.45 51.08 1986 1000.0 - 10.45 51.08 1987 1000.0 - 10.45 51.08 1988 401.2 - 10.45 51.08 1989 293.7 - 10.45 51.08 1990 211.2 - 10.45 51.08 1991 297.9 - 10.45 51.08 1992 598.8 - 10.45 51.08 1993 584.2 - 10.45 51.08 1994 1000.0 - 10.45 51.08 1995 1000.0 - 10.45 51.08 1996 1000.0 - 10.45 51.08 1997 498.3 - 10.45 51.08 1998 1000.0 - 10.45 51.08 1999 1000.0 - 10.45 51.08 2000 725.8 - 10.45 51.08 2001 426.3 - 10.45 51.08 2002 1000.0 - 10.45 51.08 2003 160.1 - 10.45 51.08 2004 476.1 - 10.45 51.08 2005 649.8 - 10.45 51.08 2006 1000.0 - 10.45 51.08 2007 1000.0 - 10.45 51.08 2008 377.9 - 10.45 51.08 2009 986.1 - 10.45 51.08 2010 366.7 - 10.45 51.08 2011 196.1 - 10.45 51.08 2012 1000.0 diff --git a/rLPJGUESS/inst/extdata/outputsForTests/run_ifdisturb/outDirectory/fpc.out b/rLPJGUESS/inst/extdata/outputsForTests/run_ifdisturb/outDirectory/fpc.out deleted file mode 100644 index 051b3db..0000000 --- a/rLPJGUESS/inst/extdata/outputsForTests/run_ifdisturb/outDirectory/fpc.out +++ /dev/null @@ -1,63 +0,0 @@ - Lon Lat Year Abi_alb BES Bet_pen Bet_pub Car_bet Cor_ave Fag_syl Fra_exc Jun_oxy MRS Pic_abi Pic_sit Pin_syl Pin_hal Pop_tre Que_coc Que_ile Que_pub Que_rob Til_cor Ulm_gla C3_gr C4_gr Total - 10.45 51.08 1951 0.000 0.000 0.000 0.000 0.000 0.000 0.268 0.000 0.000 0.000 0.155 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.422 - 10.45 51.08 1952 0.000 0.000 0.000 0.000 0.000 0.000 0.271 0.000 0.000 0.000 0.145 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.416 - 10.45 51.08 1953 0.000 0.000 0.000 0.000 0.000 0.000 0.276 0.000 0.000 0.000 0.150 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.426 - 10.45 51.08 1954 0.000 0.000 0.000 0.000 0.000 0.000 0.278 0.000 0.000 0.000 0.154 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.432 - 10.45 51.08 1955 0.000 0.000 0.000 0.000 0.000 0.000 0.281 0.000 0.000 0.000 0.154 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.435 - 10.45 51.08 1956 0.000 0.000 0.000 0.000 0.000 0.000 0.283 0.000 0.000 0.000 0.154 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.437 - 10.45 51.08 1957 0.000 0.000 0.000 0.000 0.000 0.000 0.286 0.000 0.000 0.000 0.155 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.441 - 10.45 51.08 1958 0.000 0.000 0.000 0.000 0.000 0.000 0.288 0.000 0.000 0.000 0.153 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.440 - 10.45 51.08 1959 0.000 0.000 0.000 0.000 0.000 0.000 0.291 0.000 0.000 0.000 0.153 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.444 - 10.45 51.08 1960 0.000 0.000 0.000 0.000 0.000 0.000 0.293 0.000 0.000 0.000 0.153 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.446 - 10.45 51.08 1961 0.000 0.000 0.000 0.000 0.000 0.000 0.295 0.000 0.000 0.000 0.150 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.445 - 10.45 51.08 1962 0.000 0.000 0.000 0.000 0.000 0.000 0.297 0.000 0.000 0.000 0.150 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.447 - 10.45 51.08 1963 0.000 0.000 0.000 0.000 0.000 0.000 0.296 0.000 0.000 0.000 0.146 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.442 - 10.45 51.08 1964 0.000 0.000 0.000 0.000 0.000 0.000 0.298 0.000 0.000 0.000 0.143 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.441 - 10.45 51.08 1965 0.000 0.000 0.000 0.000 0.000 0.000 0.300 0.000 0.000 0.000 0.144 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.444 - 10.45 51.08 1966 0.000 0.000 0.000 0.000 0.000 0.000 0.302 0.000 0.000 0.000 0.143 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.444 - 10.45 51.08 1967 0.000 0.000 0.000 0.000 0.000 0.000 0.302 0.000 0.000 0.000 0.142 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.444 - 10.45 51.08 1968 0.000 0.000 0.000 0.000 0.000 0.000 0.303 0.000 0.000 0.000 0.140 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.444 - 10.45 51.08 1969 0.000 0.000 0.000 0.000 0.000 0.000 0.304 0.000 0.000 0.000 0.136 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.440 - 10.45 51.08 1970 0.000 0.000 0.000 0.000 0.000 0.000 0.303 0.000 0.000 0.000 0.130 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.434 - 10.45 51.08 1971 0.000 0.000 0.000 0.000 0.000 0.000 0.304 0.000 0.000 0.000 0.130 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.434 - 10.45 51.08 1972 0.000 0.000 0.000 0.000 0.000 0.000 0.304 0.000 0.000 0.000 0.126 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.430 - 10.45 51.08 1973 0.000 0.000 0.000 0.000 0.000 0.000 0.304 0.000 0.000 0.000 0.126 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.430 - 10.45 51.08 1974 0.000 0.000 0.000 0.000 0.000 0.000 0.306 0.000 0.000 0.000 0.128 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.433 - 10.45 51.08 1975 0.000 0.000 0.000 0.000 0.000 0.000 0.305 0.000 0.000 0.000 0.112 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.417 - 10.45 51.08 1976 0.000 0.000 0.000 0.000 0.000 0.000 0.305 0.000 0.000 0.000 0.110 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.415 - 10.45 51.08 1977 0.000 0.000 0.000 0.000 0.000 0.000 0.306 0.000 0.000 0.000 0.111 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.417 - 10.45 51.08 1978 0.000 0.000 0.000 0.000 0.000 0.000 0.307 0.000 0.000 0.000 0.113 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.420 - 10.45 51.08 1979 0.000 0.000 0.000 0.000 0.000 0.000 0.307 0.000 0.000 0.000 0.115 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.422 - 10.45 51.08 1980 0.000 0.000 0.000 0.000 0.000 0.000 0.308 0.000 0.000 0.000 0.116 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.424 - 10.45 51.08 1981 0.000 0.000 0.000 0.000 0.000 0.000 0.296 0.000 0.000 0.000 0.115 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.411 - 10.45 51.08 1982 0.000 0.000 0.000 0.000 0.000 0.000 0.297 0.000 0.000 0.000 0.117 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.414 - 10.45 51.08 1983 0.000 0.000 0.000 0.000 0.000 0.000 0.297 0.000 0.000 0.000 0.116 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.414 - 10.45 51.08 1984 0.000 0.000 0.000 0.000 0.000 0.000 0.258 0.000 0.000 0.000 0.115 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.373 - 10.45 51.08 1985 0.000 0.000 0.000 0.000 0.000 0.000 0.261 0.000 0.000 0.000 0.114 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.376 - 10.45 51.08 1986 0.000 0.000 0.000 0.000 0.000 0.000 0.263 0.000 0.000 0.000 0.116 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.379 - 10.45 51.08 1987 0.000 0.000 0.000 0.000 0.000 0.000 0.266 0.000 0.000 0.000 0.119 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.385 - 10.45 51.08 1988 0.000 0.000 0.000 0.000 0.000 0.000 0.270 0.000 0.000 0.000 0.122 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.391 - 10.45 51.08 1989 0.000 0.000 0.000 0.000 0.000 0.000 0.273 0.000 0.000 0.000 0.123 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.396 - 10.45 51.08 1990 0.000 0.000 0.000 0.000 0.000 0.000 0.278 0.000 0.000 0.000 0.128 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.406 - 10.45 51.08 1991 0.000 0.000 0.000 0.000 0.000 0.000 0.280 0.000 0.000 0.000 0.129 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.409 - 10.45 51.08 1992 0.000 0.000 0.000 0.000 0.000 0.000 0.280 0.000 0.000 0.000 0.132 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.412 - 10.45 51.08 1993 0.000 0.000 0.000 0.000 0.000 0.000 0.283 0.000 0.000 0.000 0.129 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.412 - 10.45 51.08 1994 0.000 0.000 0.000 0.000 0.000 0.000 0.284 0.000 0.000 0.000 0.129 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.412 - 10.45 51.08 1995 0.000 0.000 0.000 0.000 0.000 0.000 0.283 0.000 0.000 0.000 0.128 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.411 - 10.45 51.08 1996 0.000 0.000 0.000 0.000 0.000 0.000 0.284 0.000 0.000 0.000 0.126 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.410 - 10.45 51.08 1997 0.000 0.000 0.000 0.000 0.000 0.000 0.286 0.000 0.000 0.000 0.129 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.415 - 10.45 51.08 1998 0.000 0.000 0.000 0.000 0.000 0.000 0.288 0.000 0.000 0.000 0.130 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.418 - 10.45 51.08 1999 0.000 0.000 0.000 0.000 0.000 0.000 0.291 0.000 0.000 0.000 0.132 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.422 - 10.45 51.08 2000 0.000 0.000 0.000 0.000 0.000 0.000 0.292 0.000 0.000 0.000 0.133 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.425 - 10.45 51.08 2001 0.000 0.000 0.000 0.000 0.000 0.000 0.294 0.000 0.000 0.000 0.132 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.426 - 10.45 51.08 2002 0.000 0.000 0.000 0.000 0.000 0.000 0.295 0.000 0.000 0.000 0.129 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.424 - 10.45 51.08 2003 0.000 0.000 0.000 0.000 0.000 0.000 0.295 0.000 0.000 0.000 0.128 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.423 - 10.45 51.08 2004 0.000 0.000 0.000 0.000 0.000 0.000 0.299 0.000 0.000 0.000 0.130 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.429 - 10.45 51.08 2005 0.000 0.000 0.000 0.000 0.000 0.000 0.301 0.000 0.000 0.000 0.128 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.429 - 10.45 51.08 2006 0.000 0.000 0.000 0.000 0.000 0.000 0.300 0.000 0.000 0.000 0.125 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.425 - 10.45 51.08 2007 0.000 0.000 0.000 0.000 0.000 0.000 0.301 0.000 0.000 0.000 0.131 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.432 - 10.45 51.08 2008 0.000 0.000 0.000 0.000 0.000 0.000 0.302 0.000 0.000 0.000 0.130 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.432 - 10.45 51.08 2009 0.000 0.000 0.000 0.000 0.000 0.000 0.303 0.000 0.000 0.000 0.131 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.434 - 10.45 51.08 2010 0.000 0.000 0.000 0.000 0.000 0.000 0.303 0.000 0.000 0.000 0.126 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.429 - 10.45 51.08 2011 0.000 0.000 0.000 0.000 0.000 0.000 0.306 0.000 0.000 0.000 0.126 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.432 - 10.45 51.08 2012 0.000 0.000 0.000 0.000 0.000 0.000 0.307 0.000 0.000 0.000 0.127 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.434 diff --git a/rLPJGUESS/inst/extdata/outputsForTests/run_ifdisturb/outDirectory/lai.out b/rLPJGUESS/inst/extdata/outputsForTests/run_ifdisturb/outDirectory/lai.out deleted file mode 100644 index fda5297..0000000 --- a/rLPJGUESS/inst/extdata/outputsForTests/run_ifdisturb/outDirectory/lai.out +++ /dev/null @@ -1,63 +0,0 @@ - Lon Lat Year Abi_alb BES Bet_pen Bet_pub Car_bet Cor_ave Fag_syl Fra_exc Jun_oxy MRS Pic_abi Pic_sit Pin_syl Pin_hal Pop_tre Que_coc Que_ile Que_pub Que_rob Til_cor Ulm_gla C3_gr C4_gr Total - 10.45 51.08 1951 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 2.0878 0.0000 0.0000 0.0000 0.4925 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 2.5802 - 10.45 51.08 1952 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 2.1462 0.0000 0.0000 0.0000 0.4605 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 2.6067 - 10.45 51.08 1953 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 2.2353 0.0000 0.0000 0.0000 0.4832 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 2.7185 - 10.45 51.08 1954 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 2.2661 0.0000 0.0000 0.0000 0.5005 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 2.7666 - 10.45 51.08 1955 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 2.2888 0.0000 0.0000 0.0000 0.4997 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 2.7886 - 10.45 51.08 1956 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 2.3229 0.0000 0.0000 0.0000 0.5011 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 2.8240 - 10.45 51.08 1957 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 2.3660 0.0000 0.0000 0.0000 0.5017 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 2.8677 - 10.45 51.08 1958 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 2.3882 0.0000 0.0000 0.0000 0.4869 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 2.8751 - 10.45 51.08 1959 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 2.4534 0.0000 0.0000 0.0000 0.4861 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 2.9395 - 10.45 51.08 1960 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 2.4719 0.0000 0.0000 0.0000 0.4850 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 2.9569 - 10.45 51.08 1961 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 2.5046 0.0000 0.0000 0.0000 0.4703 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 2.9749 - 10.45 51.08 1962 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 2.5306 0.0000 0.0000 0.0000 0.4678 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 2.9984 - 10.45 51.08 1963 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 2.5435 0.0000 0.0000 0.0000 0.4501 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 2.9936 - 10.45 51.08 1964 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 2.5811 0.0000 0.0000 0.0000 0.4359 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 3.0169 - 10.45 51.08 1965 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 2.5928 0.0000 0.0000 0.0000 0.4412 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 3.0340 - 10.45 51.08 1966 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 2.6272 0.0000 0.0000 0.0000 0.4335 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 3.0607 - 10.45 51.08 1967 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 2.6214 0.0000 0.0000 0.0000 0.4305 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 3.0518 - 10.45 51.08 1968 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 2.6359 0.0000 0.0000 0.0000 0.4209 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 3.0568 - 10.45 51.08 1969 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 2.6237 0.0000 0.0000 0.0000 0.4016 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 3.0253 - 10.45 51.08 1970 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 2.6072 0.0000 0.0000 0.0000 0.3781 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 2.9853 - 10.45 51.08 1971 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 2.6087 0.0000 0.0000 0.0000 0.3770 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 2.9857 - 10.45 51.08 1972 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 2.6022 0.0000 0.0000 0.0000 0.3653 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 2.9676 - 10.45 51.08 1973 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 2.5833 0.0000 0.0000 0.0000 0.3659 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 2.9492 - 10.45 51.08 1974 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 2.5931 0.0000 0.0000 0.0000 0.3717 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 2.9648 - 10.45 51.08 1975 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 2.5646 0.0000 0.0000 0.0000 0.3294 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 2.8940 - 10.45 51.08 1976 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 2.5536 0.0000 0.0000 0.0000 0.3228 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 2.8764 - 10.45 51.08 1977 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 2.5532 0.0000 0.0000 0.0000 0.3239 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 2.8771 - 10.45 51.08 1978 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 2.5500 0.0000 0.0000 0.0000 0.3310 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 2.8810 - 10.45 51.08 1979 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 2.5305 0.0000 0.0000 0.0000 0.3381 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 2.8686 - 10.45 51.08 1980 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 2.5133 0.0000 0.0000 0.0000 0.3452 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 2.8586 - 10.45 51.08 1981 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 2.4840 0.0000 0.0000 0.0000 0.3392 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 2.8232 - 10.45 51.08 1982 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 2.4693 0.0000 0.0000 0.0000 0.3478 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 2.8171 - 10.45 51.08 1983 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 2.4833 0.0000 0.0000 0.0000 0.3435 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 2.8268 - 10.45 51.08 1984 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 2.1313 0.0000 0.0000 0.0000 0.3400 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 2.4712 - 10.45 51.08 1985 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 2.1786 0.0000 0.0000 0.0000 0.3405 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 2.5191 - 10.45 51.08 1986 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 2.1996 0.0000 0.0000 0.0000 0.3490 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 2.5486 - 10.45 51.08 1987 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 2.2235 0.0000 0.0000 0.0000 0.3598 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 2.5834 - 10.45 51.08 1988 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 2.2622 0.0000 0.0000 0.0000 0.3736 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 2.6357 - 10.45 51.08 1989 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 2.3214 0.0000 0.0000 0.0000 0.3809 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 2.7023 - 10.45 51.08 1990 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 2.3927 0.0000 0.0000 0.0000 0.4047 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 2.7974 - 10.45 51.08 1991 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 2.4143 0.0000 0.0000 0.0000 0.4077 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 2.8220 - 10.45 51.08 1992 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 2.3983 0.0000 0.0000 0.0000 0.4183 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 2.8166 - 10.45 51.08 1993 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 2.4341 0.0000 0.0000 0.0000 0.4085 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 2.8426 - 10.45 51.08 1994 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 2.4293 0.0000 0.0000 0.0000 0.4046 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 2.8340 - 10.45 51.08 1995 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 2.4137 0.0000 0.0000 0.0000 0.3981 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 2.8118 - 10.45 51.08 1996 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 2.4012 0.0000 0.0000 0.0000 0.3887 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 2.7899 - 10.45 51.08 1997 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 2.4158 0.0000 0.0000 0.0000 0.4009 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 2.8167 - 10.45 51.08 1998 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 2.4405 0.0000 0.0000 0.0000 0.4028 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 2.8433 - 10.45 51.08 1999 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 2.4711 0.0000 0.0000 0.0000 0.4078 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 2.8789 - 10.45 51.08 2000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 2.4739 0.0000 0.0000 0.0000 0.4107 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 2.8846 - 10.45 51.08 2001 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 2.4850 0.0000 0.0000 0.0000 0.4058 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 2.8908 - 10.45 51.08 2002 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 2.4721 0.0000 0.0000 0.0000 0.3953 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 2.8674 - 10.45 51.08 2003 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 2.4532 0.0000 0.0000 0.0000 0.3892 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 2.8423 - 10.45 51.08 2004 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 2.5162 0.0000 0.0000 0.0000 0.3957 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 2.9119 - 10.45 51.08 2005 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 2.5487 0.0000 0.0000 0.0000 0.3889 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 2.9376 - 10.45 51.08 2006 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 2.5454 0.0000 0.0000 0.0000 0.3757 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 2.9211 - 10.45 51.08 2007 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 2.5648 0.0000 0.0000 0.0000 0.4009 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 2.9658 - 10.45 51.08 2008 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 2.5710 0.0000 0.0000 0.0000 0.3955 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 2.9665 - 10.45 51.08 2009 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 2.5826 0.0000 0.0000 0.0000 0.3970 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 2.9796 - 10.45 51.08 2010 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 2.5704 0.0000 0.0000 0.0000 0.3777 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 2.9480 - 10.45 51.08 2011 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 2.6167 0.0000 0.0000 0.0000 0.3797 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 2.9964 - 10.45 51.08 2012 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 2.6242 0.0000 0.0000 0.0000 0.3830 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 3.0073 diff --git a/rLPJGUESS/inst/extdata/outputsForTests/run_ifdisturb/outDirectory/maet.out b/rLPJGUESS/inst/extdata/outputsForTests/run_ifdisturb/outDirectory/maet.out deleted file mode 100644 index 35ea291..0000000 --- a/rLPJGUESS/inst/extdata/outputsForTests/run_ifdisturb/outDirectory/maet.out +++ /dev/null @@ -1,63 +0,0 @@ - Lon Lat Year Jan Feb Mar Apr May Jun Jul Aug Sep Oct Nov Dec - 10.45 51.08 1951 0.206 0.658 3.119 17.258 30.497 37.949 43.740 34.348 23.251 10.189 1.878 0.196 - 10.45 51.08 1952 0.132 0.285 1.981 20.461 34.366 42.718 48.296 33.311 13.861 6.773 0.728 0.086 - 10.45 51.08 1953 0.083 0.580 7.532 27.446 39.560 33.124 41.675 36.761 23.654 10.289 1.019 0.220 - 10.45 51.08 1954 0.107 0.207 3.468 13.472 38.505 41.901 29.274 32.219 20.560 9.910 2.332 0.198 - 10.45 51.08 1955 0.114 0.218 2.009 15.430 34.443 38.057 33.425 29.130 21.010 9.464 1.700 0.180 - 10.45 51.08 1956 0.198 0.042 2.541 11.074 39.199 30.093 36.955 31.463 22.377 9.135 1.048 0.211 - 10.45 51.08 1957 0.197 0.767 9.019 22.189 32.649 49.080 39.016 33.330 17.877 9.276 0.627 0.115 - 10.45 51.08 1958 0.131 1.124 1.962 11.348 34.503 37.746 44.380 39.433 24.840 10.166 1.278 0.179 - 10.45 51.08 1959 0.199 0.523 7.510 23.941 37.837 45.468 44.674 34.113 30.610 13.124 0.536 0.150 - 10.45 51.08 1960 0.198 0.337 3.578 15.061 33.155 48.890 41.465 32.718 19.482 8.098 2.114 0.128 - 10.45 51.08 1961 0.089 1.195 7.230 17.545 26.423 43.207 37.615 34.036 27.403 11.551 0.348 0.132 - 10.45 51.08 1962 0.233 0.269 1.168 13.496 26.684 45.388 37.005 37.313 24.199 10.463 1.562 0.055 - 10.45 51.08 1963 0.027 0.060 2.165 13.933 36.491 39.799 48.107 33.437 23.060 8.623 2.385 0.064 - 10.45 51.08 1964 0.056 0.358 0.727 12.991 40.514 54.461 49.553 35.933 24.841 7.895 0.582 0.137 - 10.45 51.08 1965 0.142 0.094 1.670 12.740 31.064 39.667 37.011 37.448 21.135 10.280 0.871 0.109 - 10.45 51.08 1966 0.112 1.911 5.224 16.812 41.315 44.877 34.749 34.372 20.992 10.586 0.503 0.096 - 10.45 51.08 1967 0.190 1.297 7.594 14.164 38.360 37.375 52.383 33.847 18.833 11.437 1.831 0.087 - 10.45 51.08 1968 0.086 0.263 4.225 20.684 30.859 41.923 44.761 33.037 18.502 8.418 1.392 0.036 - 10.45 51.08 1969 0.143 0.172 0.278 9.370 33.379 40.930 49.592 31.058 23.122 10.509 2.659 0.021 - 10.45 51.08 1970 0.053 0.176 1.050 7.141 27.861 49.090 42.969 31.226 24.630 6.829 2.096 0.163 - 10.45 51.08 1971 0.148 0.249 1.595 13.884 34.158 32.541 52.430 38.943 23.046 11.420 1.853 0.139 - 10.45 51.08 1972 0.039 0.313 4.788 13.769 29.353 41.178 37.881 30.771 18.120 8.595 1.940 0.130 - 10.45 51.08 1973 0.067 0.212 2.453 7.817 33.121 40.347 40.698 41.400 22.480 8.199 1.470 0.065 - 10.45 51.08 1974 0.188 0.804 6.728 20.837 29.147 35.463 35.506 34.520 23.458 4.708 0.295 0.153 - 10.45 51.08 1975 0.275 0.252 1.898 11.659 32.351 34.282 45.509 44.355 23.016 6.944 1.350 0.075 - 10.45 51.08 1976 0.096 0.235 1.098 13.051 35.888 44.846 46.168 36.973 16.820 8.709 1.598 0.055 - 10.45 51.08 1977 0.098 0.412 5.728 12.850 34.680 29.132 37.174 24.542 17.902 9.148 1.647 0.069 - 10.45 51.08 1978 0.072 0.201 4.289 13.918 27.233 36.446 36.698 31.305 16.025 9.099 1.090 0.064 - 10.45 51.08 1979 0.026 0.051 1.139 8.453 30.145 39.836 32.321 32.837 21.350 9.639 0.979 0.124 - 10.45 51.08 1980 0.039 0.311 1.098 8.727 30.877 37.373 30.360 37.031 21.360 8.667 0.301 0.065 - 10.45 51.08 1981 0.051 0.119 7.270 18.208 32.326 36.041 34.346 31.095 21.216 8.248 0.440 0.026 - 10.45 51.08 1982 0.063 0.190 1.810 12.714 32.270 40.831 42.899 37.897 26.713 8.080 3.027 0.064 - 10.45 51.08 1983 0.181 0.108 3.530 15.662 26.331 41.120 50.131 36.514 21.712 9.840 1.810 0.068 - 10.45 51.08 1984 0.091 0.116 0.834 9.936 20.425 33.018 35.558 32.264 15.930 8.641 1.967 0.073 - 10.45 51.08 1985 0.053 0.169 0.973 13.432 30.554 29.494 41.070 30.719 19.891 8.919 0.810 0.165 - 10.45 51.08 1986 0.089 0.032 1.717 6.626 31.257 35.870 37.114 31.762 16.333 9.908 2.522 0.145 - 10.45 51.08 1987 0.031 0.114 0.743 14.155 24.903 26.241 36.793 26.867 18.522 8.630 1.172 0.090 - 10.45 51.08 1988 0.191 0.249 0.954 12.525 35.647 31.322 39.090 36.473 18.669 8.407 1.241 0.115 - 10.45 51.08 1989 0.205 0.396 6.311 12.687 42.206 39.027 38.715 35.441 19.730 9.839 1.227 0.123 - 10.45 51.08 1990 0.217 1.599 10.400 16.158 42.421 32.256 41.485 36.961 15.081 10.343 0.361 0.074 - 10.45 51.08 1991 0.123 0.368 5.656 17.434 24.249 34.513 47.807 34.548 25.507 10.176 0.913 0.063 - 10.45 51.08 1992 0.108 0.432 3.880 14.377 42.287 35.710 41.959 36.727 20.717 5.322 0.589 0.101 - 10.45 51.08 1993 0.223 0.157 5.231 22.940 38.810 37.075 36.539 34.527 16.140 7.161 0.286 0.119 - 10.45 51.08 1994 0.170 0.234 5.907 16.047 33.770 41.015 49.522 34.522 19.279 7.619 1.980 0.174 - 10.45 51.08 1995 0.137 0.619 3.192 14.185 31.996 30.544 46.613 41.626 15.671 10.785 0.944 0.030 - 10.45 51.08 1996 0.043 0.282 0.689 13.523 22.757 39.466 35.078 31.044 13.134 7.608 1.637 0.069 - 10.45 51.08 1997 0.051 0.837 6.489 14.790 32.889 40.088 34.047 38.541 24.832 7.271 0.904 0.084 - 10.45 51.08 1998 0.250 1.666 5.891 18.269 38.227 38.773 33.349 35.771 15.763 5.185 0.215 0.131 - 10.45 51.08 1999 0.243 0.321 4.781 17.060 37.404 37.436 41.126 34.267 27.343 7.473 1.199 0.118 - 10.45 51.08 2000 0.119 0.676 4.960 20.621 41.726 42.171 27.291 37.782 18.231 9.400 1.422 0.193 - 10.45 51.08 2001 0.147 0.406 2.637 12.868 41.873 32.565 45.544 37.344 14.091 11.377 1.269 0.066 - 10.45 51.08 2002 0.233 1.646 7.116 16.963 31.081 39.590 34.359 32.408 20.498 5.933 0.344 0.066 - 10.45 51.08 2003 0.134 0.164 4.287 17.823 34.783 50.803 42.271 39.082 22.570 6.055 0.946 0.099 - 10.45 51.08 2004 0.088 0.537 6.614 22.314 29.306 37.372 38.245 39.988 24.749 11.072 0.273 0.072 - 10.45 51.08 2005 0.174 0.108 4.196 20.555 36.208 43.871 42.197 30.458 25.781 12.178 2.234 0.076 - 10.45 51.08 2006 0.043 0.170 1.425 15.187 37.734 45.182 56.767 25.813 29.528 10.479 2.154 0.203 - 10.45 51.08 2007 0.232 0.587 2.768 26.023 38.728 42.486 39.209 35.228 18.409 8.428 0.926 0.090 - 10.45 51.08 2008 0.267 1.558 5.817 14.637 40.740 44.856 43.008 34.798 18.181 8.620 0.804 0.065 - 10.45 51.08 2009 0.072 0.162 1.663 23.810 34.923 32.036 40.731 41.026 21.756 6.117 0.999 0.086 - 10.45 51.08 2010 0.028 0.252 4.383 22.403 22.967 46.622 48.747 27.108 18.217 9.085 1.299 0.019 - 10.45 51.08 2011 0.134 0.420 7.117 27.855 42.234 38.519 35.510 30.782 24.631 10.825 0.949 0.129 - 10.45 51.08 2012 0.120 0.256 8.364 16.077 40.496 32.468 38.254 39.829 22.816 9.922 1.010 0.092 diff --git a/rLPJGUESS/inst/extdata/outputsForTests/run_ifdisturb/outDirectory/mevap.out b/rLPJGUESS/inst/extdata/outputsForTests/run_ifdisturb/outDirectory/mevap.out deleted file mode 100644 index ff31445..0000000 --- a/rLPJGUESS/inst/extdata/outputsForTests/run_ifdisturb/outDirectory/mevap.out +++ /dev/null @@ -1,63 +0,0 @@ - Lon Lat Year Jan Feb Mar Apr May Jun Jul Aug Sep Oct Nov Dec - 10.45 51.08 1951 5.379 11.060 19.623 18.056 8.340 47.209 23.952 29.763 13.295 4.811 6.009 5.361 - 10.45 51.08 1952 3.730 2.829 23.356 30.381 31.149 16.603 4.888 2.466 18.856 14.671 6.970 3.503 - 10.45 51.08 1953 0.127 4.569 20.731 10.197 8.547 21.527 29.007 13.744 3.673 2.790 3.766 2.455 - 10.45 51.08 1954 3.793 8.666 18.307 22.776 13.274 9.282 26.993 26.010 13.009 11.064 4.485 4.210 - 10.45 51.08 1955 0.621 5.146 8.913 26.687 13.667 14.426 27.712 33.398 14.104 6.075 4.614 4.711 - 10.45 51.08 1956 6.285 0.000 19.229 25.814 22.207 31.994 44.155 24.091 10.333 6.727 4.376 3.395 - 10.45 51.08 1957 5.910 10.856 18.677 14.203 12.836 18.319 24.134 21.745 10.468 12.483 7.849 4.251 - 10.45 51.08 1958 6.478 9.771 10.376 23.923 26.032 29.936 30.864 20.709 9.314 9.462 5.875 5.044 - 10.45 51.08 1959 6.681 8.658 13.463 14.873 13.308 18.889 2.253 14.641 3.597 0.467 5.931 3.810 - 10.45 51.08 1960 4.122 9.823 15.643 14.846 25.339 16.639 5.985 14.347 15.919 12.961 6.693 1.833 - 10.45 51.08 1961 1.201 13.298 14.325 25.057 31.993 37.160 6.053 9.813 5.005 1.045 2.109 3.592 - 10.45 51.08 1962 6.508 10.369 8.167 24.627 16.280 6.887 12.776 6.154 6.780 1.962 0.584 1.575 - 10.45 51.08 1963 0.000 0.000 17.248 25.322 14.419 16.591 23.018 26.655 9.759 8.088 5.267 3.914 - 10.45 51.08 1964 3.038 10.768 13.446 25.395 32.855 17.373 9.913 10.330 5.028 3.216 3.252 2.789 - 10.45 51.08 1965 5.213 0.000 12.469 21.567 24.244 30.727 17.188 16.427 9.944 3.685 1.335 4.678 - 10.45 51.08 1966 3.812 8.754 16.239 21.915 15.567 18.385 40.380 23.066 14.716 5.370 6.876 4.935 - 10.45 51.08 1967 5.703 10.043 19.018 18.106 14.122 31.695 18.833 13.151 17.332 9.701 3.997 3.620 - 10.45 51.08 1968 3.968 10.279 23.209 17.188 19.834 14.606 8.372 8.748 12.052 12.059 5.709 2.749 - 10.45 51.08 1969 4.676 2.784 0.000 29.218 35.453 38.020 13.075 6.171 20.464 5.303 3.073 1.240 - 10.45 51.08 1970 0.000 2.209 13.232 31.852 28.294 13.210 10.674 31.500 12.831 7.158 5.689 4.065 - 10.45 51.08 1971 2.890 7.948 12.832 16.441 16.132 18.553 6.996 1.314 2.278 4.263 3.649 4.946 - 10.45 51.08 1972 3.414 7.237 24.092 17.610 22.786 30.743 25.063 38.655 11.094 4.264 4.029 4.634 - 10.45 51.08 1973 4.748 9.293 20.618 17.664 19.102 9.408 7.774 8.034 9.253 10.532 7.064 4.886 - 10.45 51.08 1974 6.322 9.400 19.389 13.065 16.213 22.105 29.114 14.294 9.081 5.986 7.958 5.972 - 10.45 51.08 1975 7.144 10.072 19.993 28.699 23.910 18.263 18.622 4.733 6.970 3.994 3.170 2.508 - 10.45 51.08 1976 6.056 9.195 13.984 15.134 10.603 26.076 2.246 3.130 1.217 4.448 3.017 3.074 - 10.45 51.08 1977 3.834 9.143 20.345 20.123 13.930 22.132 30.977 31.517 18.243 9.263 8.459 5.149 - 10.45 51.08 1978 5.557 5.046 17.451 14.720 19.426 8.217 14.729 15.729 11.368 12.787 4.343 3.306 - 10.45 51.08 1979 0.000 0.000 16.219 29.656 24.298 14.942 21.789 12.102 6.995 4.219 5.521 5.639 - 10.45 51.08 1980 4.740 10.254 11.351 20.147 21.524 13.258 15.936 5.103 4.968 6.360 4.002 3.579 - 10.45 51.08 1981 2.402 7.784 23.237 16.485 33.809 27.543 8.979 24.381 9.807 14.034 8.664 1.727 - 10.45 51.08 1982 5.319 10.232 16.061 13.600 18.304 5.309 7.489 5.949 0.403 3.790 2.239 1.884 - 10.45 51.08 1983 3.409 5.238 13.351 37.017 26.911 21.037 5.840 12.928 8.295 3.822 1.257 1.499 - 10.45 51.08 1984 3.336 8.373 16.659 32.427 30.873 30.812 19.530 25.116 16.278 12.902 6.129 5.212 - 10.45 51.08 1985 2.195 9.268 14.142 20.054 10.665 16.183 16.455 13.287 8.443 1.853 0.575 3.193 - 10.45 51.08 1986 6.090 3.370 19.912 29.677 32.948 30.094 8.815 12.324 15.403 10.580 6.308 3.384 - 10.45 51.08 1987 1.599 3.848 6.601 25.181 21.236 44.512 25.568 29.444 18.291 11.833 4.397 4.880 - 10.45 51.08 1988 7.055 7.524 10.049 29.089 10.482 10.120 29.575 9.718 3.673 1.771 1.517 4.367 - 10.45 51.08 1989 7.335 8.626 22.186 14.213 17.256 15.401 7.035 6.311 4.199 5.933 8.790 5.724 - 10.45 51.08 1990 6.700 13.138 20.411 16.580 11.663 25.678 17.127 2.933 8.474 5.814 4.260 3.810 - 10.45 51.08 1991 5.279 6.819 15.326 10.706 10.252 10.235 7.356 25.758 3.365 1.877 1.539 1.988 - 10.45 51.08 1992 4.531 8.055 19.086 25.601 13.132 14.707 29.901 9.622 12.795 4.545 6.419 5.287 - 10.45 51.08 1993 6.322 3.675 19.115 15.308 13.187 35.845 31.788 17.994 11.105 7.471 4.877 5.099 - 10.45 51.08 1994 6.885 8.772 23.825 26.908 24.565 23.975 30.248 17.188 18.223 8.117 6.045 5.796 - 10.45 51.08 1995 6.581 12.862 16.568 20.521 21.756 32.788 31.947 19.012 16.875 12.624 3.889 2.569 - 10.45 51.08 1996 3.736 8.993 13.765 19.843 27.451 23.876 28.982 26.808 14.444 8.694 5.716 4.266 - 10.45 51.08 1997 5.335 13.267 22.856 23.431 16.714 6.121 26.832 18.706 8.188 5.748 4.499 3.839 - 10.45 51.08 1998 6.640 9.847 16.457 14.869 19.711 16.425 17.995 7.648 17.568 13.523 8.363 4.847 - 10.45 51.08 1999 6.304 8.998 18.302 19.958 14.340 26.666 35.250 12.931 6.672 2.662 5.182 5.249 - 10.45 51.08 2000 6.401 13.762 23.598 24.084 13.345 7.676 10.337 14.809 16.322 10.229 4.845 3.215 - 10.45 51.08 2001 3.641 8.025 15.575 27.418 23.632 18.420 35.092 5.229 6.933 7.728 5.582 4.593 - 10.45 51.08 2002 6.757 12.019 20.923 19.948 28.466 30.429 26.072 26.975 11.370 11.776 9.424 3.724 - 10.45 51.08 2003 6.561 9.875 21.972 14.386 13.422 34.416 6.887 1.144 7.743 6.031 5.325 5.200 - 10.45 51.08 2004 5.953 10.314 15.579 17.283 32.190 13.145 21.836 5.935 3.562 3.380 4.376 4.822 - 10.45 51.08 2005 6.782 9.282 17.195 21.646 17.307 6.177 12.689 22.598 16.777 10.663 4.624 3.592 - 10.45 51.08 2006 4.145 6.344 11.705 25.161 20.170 28.167 28.534 19.047 18.104 8.520 5.001 3.639 - 10.45 51.08 2007 5.958 10.159 21.612 19.425 15.232 37.323 33.281 36.032 13.172 11.447 5.453 4.747 - 10.45 51.08 2008 6.797 9.700 17.965 27.252 15.925 10.697 14.847 3.071 4.281 7.218 6.313 4.617 - 10.45 51.08 2009 5.073 8.336 19.010 23.891 29.271 17.895 21.645 9.198 8.531 7.765 8.867 4.834 - 10.45 51.08 2010 0.000 2.556 21.479 15.827 26.424 15.349 21.973 35.841 14.443 13.402 7.477 0.000 - 10.45 51.08 2011 4.306 9.809 19.709 14.065 3.681 5.218 24.637 16.525 15.009 6.967 3.863 3.124 - 10.45 51.08 2012 6.591 8.464 16.062 8.763 11.693 26.099 31.959 14.916 6.179 4.558 3.624 5.268 diff --git a/rLPJGUESS/inst/extdata/outputsForTests/run_ifdisturb/outDirectory/mgpp.out b/rLPJGUESS/inst/extdata/outputsForTests/run_ifdisturb/outDirectory/mgpp.out deleted file mode 100644 index 2fa0514..0000000 --- a/rLPJGUESS/inst/extdata/outputsForTests/run_ifdisturb/outDirectory/mgpp.out +++ /dev/null @@ -1,63 +0,0 @@ - Lon Lat Year Jan Feb Mar Apr May Jun Jul Aug Sep Oct Nov Dec - 10.45 51.08 1951 0.003 0.007 0.013 0.064 0.154 0.185 0.187 0.154 0.114 0.056 0.016 0.003 - 10.45 51.08 1952 0.002 0.003 0.013 0.085 0.184 0.187 0.172 0.134 0.089 0.046 0.007 0.001 - 10.45 51.08 1953 0.001 0.005 0.034 0.124 0.170 0.162 0.177 0.167 0.122 0.064 0.010 0.004 - 10.45 51.08 1954 0.002 0.002 0.022 0.051 0.172 0.184 0.161 0.155 0.106 0.065 0.016 0.004 - 10.45 51.08 1955 0.001 0.002 0.009 0.052 0.171 0.186 0.158 0.140 0.113 0.058 0.012 0.004 - 10.45 51.08 1956 0.003 0.000 0.017 0.042 0.177 0.166 0.174 0.166 0.121 0.057 0.007 0.004 - 10.45 51.08 1957 0.003 0.009 0.039 0.098 0.165 0.195 0.154 0.163 0.103 0.058 0.008 0.002 - 10.45 51.08 1958 0.002 0.007 0.006 0.042 0.163 0.175 0.188 0.180 0.127 0.063 0.010 0.004 - 10.45 51.08 1959 0.003 0.005 0.031 0.103 0.196 0.185 0.152 0.155 0.159 0.078 0.007 0.003 - 10.45 51.08 1960 0.003 0.003 0.016 0.057 0.162 0.193 0.199 0.162 0.110 0.055 0.017 0.002 - 10.45 51.08 1961 0.001 0.012 0.031 0.096 0.152 0.196 0.173 0.165 0.127 0.070 0.005 0.002 - 10.45 51.08 1962 0.004 0.003 0.005 0.051 0.142 0.200 0.188 0.177 0.129 0.060 0.009 0.001 - 10.45 51.08 1963 0.000 0.000 0.014 0.058 0.166 0.190 0.195 0.165 0.124 0.054 0.021 0.001 - 10.45 51.08 1964 0.001 0.004 0.006 0.057 0.197 0.227 0.203 0.169 0.131 0.047 0.006 0.002 - 10.45 51.08 1965 0.002 0.001 0.012 0.049 0.152 0.193 0.183 0.190 0.124 0.059 0.006 0.002 - 10.45 51.08 1966 0.002 0.009 0.016 0.076 0.209 0.197 0.184 0.172 0.117 0.065 0.004 0.002 - 10.45 51.08 1967 0.003 0.007 0.027 0.049 0.178 0.190 0.209 0.166 0.110 0.073 0.011 0.002 - 10.45 51.08 1968 0.001 0.003 0.020 0.075 0.168 0.208 0.202 0.163 0.109 0.057 0.010 0.000 - 10.45 51.08 1969 0.002 0.001 0.002 0.039 0.166 0.198 0.197 0.143 0.128 0.069 0.020 0.000 - 10.45 51.08 1970 0.001 0.002 0.007 0.030 0.143 0.205 0.197 0.164 0.133 0.047 0.016 0.003 - 10.45 51.08 1971 0.002 0.003 0.009 0.053 0.157 0.181 0.220 0.163 0.132 0.069 0.013 0.003 - 10.45 51.08 1972 0.000 0.004 0.024 0.053 0.154 0.214 0.172 0.166 0.105 0.047 0.014 0.002 - 10.45 51.08 1973 0.001 0.003 0.015 0.026 0.157 0.197 0.183 0.191 0.120 0.051 0.010 0.001 - 10.45 51.08 1974 0.003 0.005 0.024 0.082 0.166 0.199 0.192 0.164 0.128 0.028 0.005 0.004 - 10.45 51.08 1975 0.005 0.003 0.012 0.041 0.164 0.182 0.195 0.187 0.122 0.042 0.009 0.002 - 10.45 51.08 1976 0.002 0.003 0.008 0.045 0.177 0.193 0.169 0.190 0.103 0.056 0.011 0.001 - 10.45 51.08 1977 0.002 0.006 0.024 0.048 0.194 0.162 0.187 0.142 0.102 0.062 0.017 0.002 - 10.45 51.08 1978 0.001 0.002 0.016 0.049 0.145 0.187 0.193 0.165 0.103 0.059 0.007 0.002 - 10.45 51.08 1979 0.000 0.000 0.010 0.033 0.130 0.195 0.179 0.172 0.120 0.057 0.008 0.003 - 10.45 51.08 1980 0.001 0.004 0.008 0.031 0.134 0.200 0.167 0.178 0.124 0.055 0.003 0.002 - 10.45 51.08 1981 0.001 0.002 0.030 0.081 0.170 0.185 0.174 0.161 0.123 0.053 0.006 0.000 - 10.45 51.08 1982 0.001 0.002 0.015 0.048 0.148 0.188 0.188 0.175 0.133 0.059 0.023 0.002 - 10.45 51.08 1983 0.004 0.001 0.015 0.067 0.160 0.194 0.198 0.172 0.128 0.061 0.013 0.002 - 10.45 51.08 1984 0.002 0.002 0.007 0.039 0.114 0.185 0.178 0.164 0.098 0.065 0.012 0.001 - 10.45 51.08 1985 0.001 0.002 0.008 0.051 0.156 0.167 0.196 0.166 0.117 0.053 0.006 0.004 - 10.45 51.08 1986 0.002 0.000 0.013 0.028 0.161 0.166 0.180 0.159 0.107 0.068 0.020 0.003 - 10.45 51.08 1987 0.000 0.001 0.006 0.058 0.144 0.163 0.184 0.153 0.110 0.056 0.010 0.002 - 10.45 51.08 1988 0.004 0.003 0.008 0.049 0.188 0.172 0.200 0.179 0.113 0.060 0.009 0.003 - 10.45 51.08 1989 0.004 0.005 0.028 0.058 0.213 0.202 0.187 0.172 0.114 0.069 0.012 0.003 - 10.45 51.08 1990 0.004 0.013 0.044 0.079 0.241 0.178 0.216 0.159 0.102 0.068 0.006 0.001 - 10.45 51.08 1991 0.003 0.004 0.027 0.076 0.137 0.202 0.189 0.167 0.138 0.065 0.008 0.001 - 10.45 51.08 1992 0.002 0.006 0.018 0.058 0.205 0.177 0.188 0.165 0.127 0.034 0.007 0.002 - 10.45 51.08 1993 0.004 0.001 0.020 0.099 0.209 0.192 0.180 0.179 0.105 0.047 0.002 0.003 - 10.45 51.08 1994 0.004 0.003 0.025 0.069 0.198 0.197 0.181 0.165 0.121 0.047 0.017 0.004 - 10.45 51.08 1995 0.002 0.008 0.015 0.060 0.173 0.164 0.181 0.188 0.102 0.071 0.007 0.000 - 10.45 51.08 1996 0.000 0.003 0.005 0.057 0.132 0.187 0.189 0.164 0.087 0.055 0.014 0.001 - 10.45 51.08 1997 0.001 0.008 0.026 0.056 0.175 0.195 0.183 0.177 0.142 0.048 0.008 0.002 - 10.45 51.08 1998 0.005 0.010 0.023 0.096 0.210 0.199 0.176 0.171 0.104 0.042 0.004 0.003 - 10.45 51.08 1999 0.004 0.003 0.020 0.079 0.203 0.212 0.188 0.175 0.140 0.051 0.011 0.003 - 10.45 51.08 2000 0.002 0.007 0.021 0.086 0.211 0.186 0.162 0.186 0.113 0.068 0.014 0.004 - 10.45 51.08 2001 0.003 0.005 0.012 0.055 0.218 0.187 0.205 0.172 0.097 0.078 0.011 0.001 - 10.45 51.08 2002 0.004 0.010 0.031 0.082 0.182 0.198 0.164 0.161 0.120 0.045 0.007 0.002 - 10.45 51.08 2003 0.003 0.001 0.024 0.071 0.195 0.220 0.188 0.144 0.133 0.037 0.011 0.002 - 10.45 51.08 2004 0.002 0.004 0.024 0.108 0.179 0.202 0.205 0.185 0.141 0.072 0.005 0.001 - 10.45 51.08 2005 0.004 0.001 0.020 0.094 0.177 0.199 0.200 0.170 0.143 0.084 0.020 0.002 - 10.45 51.08 2006 0.001 0.002 0.008 0.065 0.207 0.203 0.190 0.156 0.155 0.078 0.020 0.005 - 10.45 51.08 2007 0.005 0.008 0.025 0.106 0.216 0.208 0.195 0.190 0.121 0.056 0.009 0.002 - 10.45 51.08 2008 0.005 0.009 0.022 0.066 0.221 0.218 0.199 0.174 0.110 0.062 0.008 0.002 - 10.45 51.08 2009 0.001 0.002 0.014 0.119 0.204 0.190 0.195 0.194 0.129 0.043 0.012 0.002 - 10.45 51.08 2010 0.000 0.003 0.023 0.097 0.144 0.218 0.195 0.156 0.117 0.058 0.012 0.000 - 10.45 51.08 2011 0.003 0.004 0.027 0.148 0.225 0.201 0.196 0.163 0.142 0.068 0.010 0.003 - 10.45 51.08 2012 0.003 0.003 0.038 0.072 0.208 0.192 0.198 0.195 0.135 0.066 0.010 0.002 diff --git a/rLPJGUESS/inst/extdata/outputsForTests/run_ifdisturb/outDirectory/mintercep.out b/rLPJGUESS/inst/extdata/outputsForTests/run_ifdisturb/outDirectory/mintercep.out deleted file mode 100644 index 9353cea..0000000 --- a/rLPJGUESS/inst/extdata/outputsForTests/run_ifdisturb/outDirectory/mintercep.out +++ /dev/null @@ -1,63 +0,0 @@ - Lon Lat Year Jan Feb Mar Apr May Jun Jul Aug Sep Oct Nov Dec - 10.45 51.08 1951 0.266 0.329 0.662 0.606 1.909 7.994 2.327 4.070 2.103 0.551 1.056 0.181 - 10.45 51.08 1952 0.428 0.267 1.338 1.603 4.030 2.244 1.101 2.124 5.208 3.224 1.869 0.304 - 10.45 51.08 1953 0.353 0.308 0.091 0.813 2.592 5.537 3.034 2.349 1.142 1.242 0.081 0.254 - 10.45 51.08 1954 0.408 0.322 0.234 1.505 1.504 2.601 6.380 4.122 2.552 2.142 0.692 0.376 - 10.45 51.08 1955 0.304 0.533 0.480 1.114 2.278 3.479 5.474 3.220 2.622 1.188 0.312 0.430 - 10.45 51.08 1956 0.342 0.313 0.462 1.945 2.067 7.106 8.557 4.691 1.337 2.580 1.003 0.275 - 10.45 51.08 1957 0.300 0.675 1.015 1.010 3.001 3.875 5.333 2.726 3.642 0.924 0.290 0.256 - 10.45 51.08 1958 0.399 0.895 1.251 1.134 4.461 3.560 4.115 4.652 2.968 1.954 1.014 0.331 - 10.45 51.08 1959 0.328 0.086 0.520 2.014 2.909 2.804 0.929 3.159 0.032 1.164 0.394 0.210 - 10.45 51.08 1960 0.514 0.247 0.430 1.366 3.489 1.780 2.907 4.306 2.602 3.145 1.234 0.332 - 10.45 51.08 1961 0.294 0.466 0.780 4.763 6.257 4.684 2.832 2.616 1.403 0.856 0.278 0.379 - 10.45 51.08 1962 0.330 0.418 0.482 0.841 3.025 0.940 4.016 1.914 1.611 0.458 0.337 0.278 - 10.45 51.08 1963 0.302 0.218 0.650 0.941 1.765 5.606 2.088 6.573 2.284 1.521 1.710 0.098 - 10.45 51.08 1964 0.153 0.338 0.418 1.749 3.603 2.572 2.514 2.825 1.540 1.308 0.352 0.122 - 10.45 51.08 1965 0.388 0.307 0.354 1.642 1.628 5.143 3.670 2.497 2.453 0.509 0.968 0.428 - 10.45 51.08 1966 0.260 0.335 0.739 2.273 3.094 5.420 5.109 4.017 1.163 2.180 0.560 0.446 - 10.45 51.08 1967 0.287 0.259 1.046 0.862 2.756 5.330 2.735 3.720 3.449 1.662 0.484 0.296 - 10.45 51.08 1968 0.265 0.547 0.409 2.384 2.241 3.823 2.405 3.293 3.098 1.959 0.552 0.186 - 10.45 51.08 1969 0.226 0.477 0.528 1.399 4.683 5.340 0.613 4.650 1.779 0.708 0.975 0.187 - 10.45 51.08 1970 0.201 0.522 0.320 1.116 3.910 2.717 2.472 6.065 1.111 2.669 1.393 0.346 - 10.45 51.08 1971 0.096 0.247 0.217 1.322 2.046 4.016 0.736 2.228 1.462 1.297 0.708 0.157 - 10.45 51.08 1972 0.087 0.022 0.382 1.013 3.482 4.183 4.774 4.940 1.399 0.983 0.735 0.023 - 10.45 51.08 1973 0.184 0.347 0.165 0.576 2.092 2.430 3.336 1.419 2.507 1.933 0.555 0.214 - 10.45 51.08 1974 0.153 0.373 0.530 0.654 3.196 4.953 3.805 2.868 1.538 2.690 0.161 0.421 - 10.45 51.08 1975 0.102 0.207 0.345 0.849 2.624 4.138 1.673 2.267 1.638 1.560 0.335 0.089 - 10.45 51.08 1976 0.446 0.080 0.149 0.552 2.045 2.605 1.444 1.861 1.829 1.158 0.774 0.117 - 10.45 51.08 1977 0.203 0.287 0.837 0.744 1.562 4.408 3.256 5.828 1.699 1.463 1.292 0.193 - 10.45 51.08 1978 0.122 0.174 0.293 0.436 2.959 1.333 2.844 3.237 3.193 1.077 0.036 0.243 - 10.45 51.08 1979 0.191 0.283 0.744 0.815 1.806 3.576 3.165 1.276 2.349 0.408 1.236 0.249 - 10.45 51.08 1980 0.205 0.249 0.195 1.149 1.315 3.281 2.925 0.988 2.558 1.118 0.331 0.212 - 10.45 51.08 1981 0.319 0.164 0.866 1.066 3.693 2.867 1.713 4.000 1.654 1.608 0.324 0.291 - 10.45 51.08 1982 0.174 0.033 0.171 0.518 1.424 2.189 2.521 0.865 0.547 1.799 0.581 0.170 - 10.45 51.08 1983 0.294 0.172 0.471 2.386 4.807 1.356 1.532 2.261 2.541 0.230 0.253 0.139 - 10.45 51.08 1984 0.298 0.347 0.028 0.582 5.505 2.468 2.874 3.063 2.511 2.546 0.221 0.118 - 10.45 51.08 1985 0.129 0.107 0.254 0.500 1.561 2.937 2.270 2.307 0.866 0.166 0.530 0.226 - 10.45 51.08 1986 0.268 0.167 0.411 1.073 3.476 2.336 2.204 2.622 1.870 0.924 0.292 0.222 - 10.45 51.08 1987 0.301 0.338 0.379 0.289 2.664 5.524 3.290 3.126 2.966 0.824 1.160 0.139 - 10.45 51.08 1988 0.223 0.350 0.674 0.594 1.115 2.484 3.301 0.970 1.095 0.668 0.774 0.367 - 10.45 51.08 1989 0.161 0.167 0.706 1.720 1.599 2.796 2.258 1.209 1.917 1.200 0.973 0.260 - 10.45 51.08 1990 0.132 0.462 0.745 2.145 0.709 3.947 1.174 2.102 2.440 0.610 0.487 0.241 - 10.45 51.08 1991 0.234 0.201 0.490 0.595 1.621 3.317 1.124 3.049 0.997 0.837 0.473 0.221 - 10.45 51.08 1992 0.114 0.183 1.297 0.550 1.335 3.777 3.418 1.807 1.321 2.023 0.579 0.231 - 10.45 51.08 1993 0.305 0.159 0.225 0.576 3.658 3.356 4.219 2.226 2.560 1.656 0.446 0.396 - 10.45 51.08 1994 0.366 0.336 0.991 1.572 4.304 2.540 3.994 4.327 2.325 1.090 0.701 0.255 - 10.45 51.08 1995 0.436 0.460 0.313 1.602 3.293 3.975 4.710 2.093 3.328 0.580 0.677 0.185 - 10.45 51.08 1996 0.015 0.292 0.247 0.887 4.205 3.350 3.706 4.130 1.615 1.878 1.238 0.188 - 10.45 51.08 1997 0.118 0.550 1.263 1.080 2.428 1.614 5.825 2.339 0.661 1.905 0.297 0.305 - 10.45 51.08 1998 0.225 0.192 0.881 2.181 2.050 3.248 3.844 1.460 3.413 3.234 0.556 0.091 - 10.45 51.08 1999 0.236 0.335 0.748 1.049 3.364 4.076 3.815 2.610 1.319 0.811 0.734 0.298 - 10.45 51.08 2000 0.273 0.618 1.435 1.237 1.509 2.297 3.318 3.031 3.243 1.494 0.424 0.160 - 10.45 51.08 2001 0.169 0.254 1.763 1.403 1.685 4.557 4.065 1.089 2.984 1.423 1.192 0.251 - 10.45 51.08 2002 0.149 0.976 1.511 1.644 3.961 3.367 3.518 4.109 1.841 2.397 0.557 0.340 - 10.45 51.08 2003 0.266 0.175 0.300 0.506 3.284 4.081 2.338 1.180 2.344 1.429 0.237 0.195 - 10.45 51.08 2004 0.226 0.146 0.399 1.575 4.613 2.587 3.730 1.775 1.696 0.523 0.295 0.102 - 10.45 51.08 2005 0.170 0.442 0.417 1.503 2.419 2.381 4.251 2.893 3.354 0.904 0.627 0.249 - 10.45 51.08 2006 0.135 0.244 0.580 1.845 2.744 3.555 2.477 5.374 0.527 2.244 1.031 0.129 - 10.45 51.08 2007 0.366 0.335 0.541 0.261 4.900 4.089 5.246 3.738 2.936 0.416 1.451 0.245 - 10.45 51.08 2008 0.259 0.230 1.364 2.403 1.003 3.213 3.091 1.791 2.006 2.490 0.198 0.186 - 10.45 51.08 2009 0.071 0.410 0.588 2.017 3.837 3.112 3.855 0.858 2.555 2.232 1.189 0.397 - 10.45 51.08 2010 0.240 0.248 0.505 0.537 4.653 0.749 5.590 6.594 1.967 0.609 0.723 0.339 - 10.45 51.08 2011 0.212 0.111 0.261 1.283 0.401 4.405 3.683 4.400 1.527 1.633 0.004 0.311 - 10.45 51.08 2012 0.399 0.084 0.098 0.567 1.829 5.756 5.542 2.543 1.443 0.957 0.508 0.292 diff --git a/rLPJGUESS/inst/extdata/outputsForTests/run_ifdisturb/outDirectory/miso.out b/rLPJGUESS/inst/extdata/outputsForTests/run_ifdisturb/outDirectory/miso.out deleted file mode 100644 index 8edc368..0000000 --- a/rLPJGUESS/inst/extdata/outputsForTests/run_ifdisturb/outDirectory/miso.out +++ /dev/null @@ -1,63 +0,0 @@ - Lon Lat Year Jan Feb Mar Apr May Jun Jul Aug Sep Oct Nov Dec - 10.45 51.08 1951 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1952 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1953 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1954 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1955 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1956 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1957 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1958 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1959 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1960 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1961 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1962 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1963 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1964 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1965 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1966 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1967 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1968 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1969 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1970 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1971 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1972 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1973 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1974 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1975 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1976 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1977 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1978 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1979 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1980 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1981 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1982 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1983 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1984 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1985 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1986 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1987 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1988 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1989 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1990 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1991 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1992 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1993 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1994 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1995 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1996 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1997 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1998 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1999 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 2000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 2001 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 2002 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 2003 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 2004 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 2005 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 2006 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 2007 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 2008 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 2009 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 2010 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 2011 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 2012 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 diff --git a/rLPJGUESS/inst/extdata/outputsForTests/run_ifdisturb/outDirectory/mlai.out b/rLPJGUESS/inst/extdata/outputsForTests/run_ifdisturb/outDirectory/mlai.out deleted file mode 100644 index 44a7b27..0000000 --- a/rLPJGUESS/inst/extdata/outputsForTests/run_ifdisturb/outDirectory/mlai.out +++ /dev/null @@ -1,63 +0,0 @@ - Lon Lat Year Jan Feb Mar Apr May Jun Jul Aug Sep Oct Nov Dec - 10.45 51.08 1951 0.468 0.468 0.555 1.046 2.265 2.482 2.482 2.482 2.482 2.482 1.810 0.468 - 10.45 51.08 1952 0.466 0.466 0.498 1.471 2.553 2.553 2.553 2.553 2.553 2.553 1.301 0.466 - 10.45 51.08 1953 0.461 0.464 0.644 1.880 2.607 2.607 2.607 2.607 2.607 2.607 0.747 0.461 - 10.45 51.08 1954 0.483 0.483 0.531 1.022 2.300 2.718 2.718 2.718 2.718 2.718 2.271 0.483 - 10.45 51.08 1955 0.501 0.501 0.556 1.097 2.597 2.767 2.767 2.767 2.767 2.767 1.936 0.501 - 10.45 51.08 1956 0.493 0.493 0.515 0.963 2.352 2.781 2.781 2.781 2.781 2.781 1.942 0.493 - 10.45 51.08 1957 0.501 0.503 0.951 1.999 2.811 2.824 2.824 2.824 2.824 2.824 0.579 0.501 - 10.45 51.08 1958 0.502 0.608 0.859 1.108 2.542 2.868 2.868 2.868 2.868 2.868 1.842 0.502 - 10.45 51.08 1959 0.487 0.487 0.868 2.059 2.875 2.875 2.875 2.875 2.875 2.875 0.646 0.487 - 10.45 51.08 1960 0.486 0.486 0.643 1.288 2.557 2.939 2.939 2.939 2.939 2.939 2.122 0.486 - 10.45 51.08 1961 0.476 0.478 0.914 2.171 2.947 2.947 2.947 2.947 2.947 2.947 0.476 0.476 - 10.45 51.08 1962 0.470 0.470 0.493 0.987 2.586 2.975 2.975 2.975 2.975 2.975 1.723 0.470 - 10.45 51.08 1963 0.460 0.460 0.499 1.096 2.664 2.990 2.990 2.990 2.990 2.990 2.316 0.460 - 10.45 51.08 1964 0.450 0.450 0.452 0.991 2.755 2.994 2.994 2.994 2.994 2.994 1.044 0.450 - 10.45 51.08 1965 0.436 0.436 0.457 1.035 2.330 3.017 3.017 3.017 3.017 3.017 1.640 0.436 - 10.45 51.08 1966 0.441 0.539 0.925 1.607 2.987 3.034 3.034 3.034 3.034 3.034 1.046 0.441 - 10.45 51.08 1967 0.429 0.477 0.802 1.229 2.598 3.057 3.057 3.057 3.057 3.057 2.006 0.429 - 10.45 51.08 1968 0.430 0.430 0.524 1.694 3.038 3.052 3.052 3.052 3.052 3.052 1.392 0.430 - 10.45 51.08 1969 0.421 0.421 0.421 0.828 2.564 3.057 3.057 3.057 3.057 3.057 2.881 0.421 - 10.45 51.08 1970 0.393 0.393 0.405 0.681 2.283 3.017 3.017 3.017 3.017 3.017 3.017 0.563 - 10.45 51.08 1971 0.378 0.378 0.421 1.046 2.555 2.985 2.985 2.985 2.985 2.985 2.203 0.378 - 10.45 51.08 1972 0.377 0.377 0.514 1.295 2.642 2.986 2.986 2.986 2.986 2.986 1.942 0.377 - 10.45 51.08 1973 0.365 0.365 0.410 0.714 2.204 2.968 2.968 2.968 2.968 2.968 1.753 0.365 - 10.45 51.08 1974 0.366 0.453 0.748 1.873 2.799 2.949 2.949 2.949 2.949 2.949 0.366 0.366 - 10.45 51.08 1975 0.329 0.329 0.368 0.786 2.469 2.922 2.922 2.922 2.922 2.922 1.453 0.329 - 10.45 51.08 1976 0.329 0.329 0.345 1.084 2.508 2.894 2.894 2.894 2.894 2.894 2.039 0.329 - 10.45 51.08 1977 0.323 0.323 0.789 1.380 2.650 2.876 2.876 2.876 2.876 2.876 1.259 0.323 - 10.45 51.08 1978 0.324 0.324 0.503 1.127 2.409 2.877 2.877 2.877 2.877 2.877 1.515 0.324 - 10.45 51.08 1979 0.331 0.331 0.343 0.726 1.939 2.881 2.881 2.881 2.881 2.881 1.436 0.331 - 10.45 51.08 1980 0.331 0.331 0.352 0.797 1.849 2.862 2.862 2.862 2.862 2.862 0.922 0.331 - 10.45 51.08 1981 0.361 0.345 0.740 2.081 2.736 2.808 2.808 2.808 2.808 2.808 0.427 0.345 - 10.45 51.08 1982 0.339 0.339 0.355 0.908 2.093 2.823 2.823 2.823 2.823 2.823 2.740 0.339 - 10.45 51.08 1983 0.348 0.348 0.522 1.211 2.700 2.817 2.817 2.817 2.817 2.817 1.582 0.348 - 10.45 51.08 1984 0.343 0.343 0.348 0.620 1.878 2.505 2.505 2.505 2.505 2.505 1.784 0.343 - 10.45 51.08 1985 0.340 0.340 0.348 1.089 2.119 2.471 2.471 2.471 2.471 2.471 1.121 0.340 - 10.45 51.08 1986 0.341 0.341 0.359 0.602 2.224 2.519 2.519 2.519 2.519 2.519 2.301 0.341 - 10.45 51.08 1987 0.349 0.349 0.355 0.877 2.328 2.549 2.549 2.549 2.549 2.549 1.962 0.349 - 10.45 51.08 1988 0.355 0.355 0.366 0.843 2.328 2.579 2.579 2.579 2.579 2.579 1.912 0.355 - 10.45 51.08 1989 0.363 0.363 0.581 1.481 2.502 2.625 2.625 2.625 2.625 2.625 1.117 0.363 - 10.45 51.08 1990 0.381 0.433 1.177 2.048 2.695 2.702 2.702 2.702 2.702 2.253 0.381 0.381 - 10.45 51.08 1991 0.405 0.405 0.793 1.804 2.587 2.799 2.799 2.799 2.799 2.799 0.964 0.405 - 10.45 51.08 1992 0.408 0.408 0.610 1.063 2.527 2.822 2.822 2.822 2.822 2.822 0.649 0.408 - 10.45 51.08 1993 0.411 0.418 0.746 1.617 2.809 2.809 2.809 2.809 2.809 2.809 0.971 0.411 - 10.45 51.08 1994 0.409 0.409 0.727 1.444 2.802 2.843 2.843 2.843 2.843 2.843 1.220 0.409 - 10.45 51.08 1995 0.405 0.405 0.549 1.275 2.707 2.834 2.834 2.834 2.834 2.834 1.700 0.405 - 10.45 51.08 1996 0.398 0.398 0.406 0.899 2.563 2.812 2.812 2.812 2.812 2.812 2.249 0.398 - 10.45 51.08 1997 0.389 0.410 0.863 1.332 2.544 2.790 2.790 2.790 2.790 2.790 1.109 0.389 - 10.45 51.08 1998 0.401 0.503 1.056 2.088 2.816 2.816 2.816 2.816 2.816 2.505 0.401 0.401 - 10.45 51.08 1999 0.403 0.407 0.649 1.588 2.777 2.844 2.844 2.844 2.844 2.844 1.217 0.403 - 10.45 51.08 2000 0.408 0.417 0.733 1.535 2.879 2.879 2.879 2.879 2.879 2.879 1.149 0.408 - 10.45 51.08 2001 0.411 0.411 0.643 1.390 2.723 2.885 2.885 2.885 2.885 2.885 1.566 0.411 - 10.45 51.08 2002 0.400 0.686 1.320 2.018 2.864 2.885 2.885 2.885 2.885 2.324 0.400 0.400 - 10.45 51.08 2003 0.395 0.395 0.508 1.269 2.820 2.867 2.867 2.867 2.867 2.867 0.725 0.395 - 10.45 51.08 2004 0.389 0.475 0.948 1.869 2.842 2.842 2.842 2.842 2.842 2.842 0.389 0.389 - 10.45 51.08 2005 0.396 0.396 0.561 1.659 2.893 2.912 2.912 2.912 2.912 2.912 1.234 0.396 - 10.45 51.08 2006 0.389 0.389 0.426 1.226 2.781 2.938 2.938 2.938 2.938 2.938 1.918 0.389 - 10.45 51.08 2007 0.376 0.376 0.393 1.451 2.914 2.921 2.921 2.921 2.921 2.921 1.564 0.376 - 10.45 51.08 2008 0.398 0.486 0.952 1.497 2.825 2.963 2.963 2.963 2.963 2.963 1.082 0.398 - 10.45 51.08 2009 0.396 0.396 0.424 1.741 2.967 2.967 2.967 2.967 2.967 2.967 1.253 0.396 - 10.45 51.08 2010 0.389 0.389 0.567 1.657 2.923 2.972 2.972 2.972 2.972 2.972 1.250 0.389 - 10.45 51.08 2011 0.378 0.386 0.681 2.157 2.948 2.948 2.948 2.948 2.948 2.948 0.549 0.378 - 10.45 51.08 2012 0.380 0.380 0.703 1.668 2.986 2.996 2.996 2.996 2.996 2.996 1.077 0.380 diff --git a/rLPJGUESS/inst/extdata/outputsForTests/run_ifdisturb/outDirectory/mmon.out b/rLPJGUESS/inst/extdata/outputsForTests/run_ifdisturb/outDirectory/mmon.out deleted file mode 100644 index 8edc368..0000000 --- a/rLPJGUESS/inst/extdata/outputsForTests/run_ifdisturb/outDirectory/mmon.out +++ /dev/null @@ -1,63 +0,0 @@ - Lon Lat Year Jan Feb Mar Apr May Jun Jul Aug Sep Oct Nov Dec - 10.45 51.08 1951 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1952 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1953 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1954 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1955 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1956 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1957 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1958 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1959 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1960 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1961 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1962 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1963 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1964 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1965 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1966 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1967 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1968 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1969 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1970 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1971 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1972 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1973 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 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10.45 51.08 1985 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1986 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1987 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1988 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1989 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1990 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1991 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1992 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1993 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1994 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1995 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1996 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1997 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1998 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1999 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 2000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 2001 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 2002 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 2003 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 2004 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 2005 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 2006 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 2007 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 2008 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 2009 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 2010 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 2011 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 2012 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 diff --git a/rLPJGUESS/inst/extdata/outputsForTests/run_ifdisturb/outDirectory/mnee.out b/rLPJGUESS/inst/extdata/outputsForTests/run_ifdisturb/outDirectory/mnee.out deleted file mode 100644 index c7c42e6..0000000 --- a/rLPJGUESS/inst/extdata/outputsForTests/run_ifdisturb/outDirectory/mnee.out +++ /dev/null @@ -1,63 +0,0 @@ - Lon Lat Year Jan Feb Mar Apr May Jun Jul Aug Sep Oct Nov Dec - 10.45 51.08 1951 -0.019 -0.012 -0.010 0.003 0.034 0.049 0.020 0.006 -0.013 -0.005 -0.020 -0.017 - 10.45 51.08 1952 -0.015 -0.006 -0.011 0.003 0.059 0.035 -0.030 -0.043 0.008 -0.001 -0.014 -0.008 - 10.45 51.08 1953 -0.008 -0.008 -0.007 0.025 0.022 0.013 0.012 0.005 -0.007 -0.021 -0.024 -0.022 - 10.45 51.08 1954 -0.007 -0.003 -0.011 0.002 0.043 0.010 0.028 0.016 -0.010 -0.005 -0.019 -0.020 - 10.45 51.08 1955 -0.007 -0.009 -0.005 0.002 0.047 0.040 0.004 0.009 -0.001 -0.008 -0.015 -0.015 - 10.45 51.08 1956 -0.017 -0.001 -0.004 -0.002 0.049 0.037 0.030 0.033 0.008 -0.014 -0.016 -0.018 - 10.45 51.08 1957 -0.010 -0.020 -0.011 0.024 0.053 0.024 -0.021 0.025 0.007 -0.001 -0.023 -0.012 - 10.45 51.08 1958 -0.015 -0.018 -0.006 0.003 0.035 0.036 0.023 0.015 -0.006 -0.010 -0.018 -0.017 - 10.45 51.08 1959 -0.016 -0.006 -0.016 0.016 0.059 0.033 -0.043 -0.003 0.028 0.005 -0.017 -0.013 - 10.45 51.08 1960 -0.014 -0.008 -0.014 -0.002 0.048 0.029 0.035 0.019 0.009 -0.003 -0.018 -0.014 - 10.45 51.08 1961 -0.009 -0.014 -0.019 0.016 0.054 0.055 0.006 0.022 -0.020 -0.026 -0.024 -0.013 - 10.45 51.08 1962 -0.016 -0.012 -0.005 -0.007 0.042 0.043 0.042 0.014 0.019 -0.015 -0.015 -0.007 - 10.45 51.08 1963 -0.003 -0.003 -0.008 -0.001 0.043 0.034 0.020 0.022 0.012 -0.004 -0.018 -0.008 - 10.45 51.08 1964 -0.005 -0.008 -0.007 -0.004 0.062 0.033 0.016 0.012 0.006 -0.009 -0.022 -0.015 - 10.45 51.08 1965 -0.015 -0.007 -0.007 -0.006 0.047 0.052 0.031 0.044 0.021 -0.008 -0.014 -0.016 - 10.45 51.08 1966 -0.008 -0.014 -0.015 0.012 0.063 0.032 0.052 0.033 0.015 -0.019 -0.015 -0.015 - 10.45 51.08 1967 -0.014 -0.017 -0.014 0.001 0.045 0.058 0.021 0.008 0.009 -0.013 -0.018 -0.012 - 10.45 51.08 1968 -0.009 -0.014 -0.009 0.000 0.056 0.053 0.025 0.012 0.004 -0.009 -0.018 -0.008 - 10.45 51.08 1969 -0.011 -0.008 -0.007 -0.006 0.046 0.061 0.012 -0.025 0.026 -0.003 -0.020 -0.005 - 10.45 51.08 1970 -0.006 -0.006 -0.008 -0.010 0.041 0.034 0.027 0.027 0.019 -0.013 -0.019 -0.015 - 10.45 51.08 1971 -0.008 -0.017 -0.010 -0.007 0.027 0.047 0.039 -0.019 0.022 -0.003 -0.015 -0.019 - 10.45 51.08 1972 -0.009 -0.011 -0.013 -0.002 0.051 0.075 0.016 0.037 0.019 -0.001 -0.017 -0.013 - 10.45 51.08 1973 -0.010 -0.014 -0.013 -0.012 0.042 0.037 0.004 0.022 0.000 -0.001 -0.015 -0.010 - 10.45 51.08 1974 -0.022 -0.020 -0.010 0.011 0.063 0.071 0.056 0.014 0.011 -0.012 -0.021 -0.023 - 10.45 51.08 1975 -0.027 -0.015 -0.017 -0.002 0.050 0.051 0.022 0.002 -0.002 -0.018 -0.015 -0.014 - 10.45 51.08 1976 -0.019 -0.007 -0.010 -0.010 0.046 0.039 -0.042 0.030 -0.009 -0.020 -0.019 -0.014 - 10.45 51.08 1977 -0.011 -0.018 -0.021 0.005 0.071 0.026 0.035 0.018 0.005 -0.008 -0.021 -0.014 - 10.45 51.08 1978 -0.017 -0.007 -0.020 -0.004 0.040 0.023 0.045 0.013 0.008 -0.004 -0.021 -0.014 - 10.45 51.08 1979 -0.005 -0.005 -0.013 -0.011 0.024 0.012 0.037 0.018 0.001 -0.013 -0.015 -0.023 - 10.45 51.08 1980 -0.007 -0.017 -0.017 -0.012 0.038 0.043 0.033 -0.001 -0.001 -0.007 -0.021 -0.014 - 10.45 51.08 1981 -0.010 -0.009 -0.011 0.009 0.054 0.035 0.010 0.019 0.011 -0.007 -0.023 -0.009 - 10.45 51.08 1982 -0.008 -0.010 -0.015 -0.007 0.031 0.003 -0.005 -0.010 -0.014 -0.019 -0.021 -0.019 - 10.45 51.08 1983 -0.026 -0.010 -0.019 0.010 0.052 0.043 -0.006 0.004 0.006 -0.015 -0.017 -0.013 - 10.45 51.08 1984 -0.022 -0.011 -0.011 -0.006 0.029 0.059 0.036 0.017 0.004 -0.004 -0.018 -0.015 - 10.45 51.08 1985 -0.004 -0.006 -0.012 -0.011 0.027 0.032 0.029 0.014 0.003 -0.032 -0.013 -0.021 - 10.45 51.08 1986 -0.011 -0.003 -0.008 -0.008 0.028 0.031 0.001 -0.005 0.023 -0.003 -0.015 -0.017 - 10.45 51.08 1987 -0.006 -0.006 -0.004 -0.002 0.047 0.054 0.021 0.028 -0.005 -0.006 -0.019 -0.013 - 10.45 51.08 1988 -0.024 -0.016 -0.013 -0.005 0.044 0.023 0.039 0.004 -0.006 -0.020 -0.019 -0.016 - 10.45 51.08 1989 -0.021 -0.015 -0.015 -0.002 0.074 0.053 0.011 0.003 -0.008 -0.007 -0.018 -0.016 - 10.45 51.08 1990 -0.016 -0.023 -0.008 0.020 0.086 0.049 0.052 -0.021 0.005 -0.010 -0.026 -0.013 - 10.45 51.08 1991 -0.021 -0.004 -0.021 0.012 0.047 0.062 -0.009 0.008 -0.002 -0.015 -0.019 -0.013 - 10.45 51.08 1992 -0.018 -0.014 -0.017 0.003 0.057 0.016 0.022 -0.019 0.021 -0.017 -0.020 -0.016 - 10.45 51.08 1993 -0.018 -0.006 -0.010 0.017 0.043 0.049 0.040 0.027 0.013 -0.012 -0.013 -0.015 - 10.45 51.08 1994 -0.021 -0.011 -0.015 0.010 0.061 0.049 -0.016 -0.010 0.022 -0.005 -0.021 -0.021 - 10.45 51.08 1995 -0.012 -0.021 -0.015 0.002 0.056 0.045 0.002 0.006 0.011 -0.006 -0.019 -0.007 - 10.45 51.08 1996 -0.005 -0.004 -0.010 -0.004 0.036 0.034 0.053 0.019 0.011 -0.005 -0.018 -0.009 - 10.45 51.08 1997 -0.006 -0.017 -0.016 0.008 0.046 0.036 0.030 0.003 0.017 -0.014 -0.016 -0.015 - 10.45 51.08 1998 -0.024 -0.016 -0.015 0.021 0.068 0.043 0.030 0.005 0.013 -0.008 -0.015 -0.011 - 10.45 51.08 1999 -0.023 -0.010 -0.015 0.011 0.066 0.067 0.026 0.018 -0.004 -0.016 -0.016 -0.016 - 10.45 51.08 2000 -0.015 -0.017 -0.014 0.012 0.044 0.022 0.031 0.023 0.011 -0.002 -0.023 -0.022 - 10.45 51.08 2001 -0.015 -0.019 -0.015 0.006 0.078 0.056 0.042 -0.010 0.003 -0.007 -0.019 -0.012 - 10.45 51.08 2002 -0.011 -0.027 -0.005 0.025 0.058 0.047 0.016 0.009 0.010 -0.006 -0.022 -0.012 - 10.45 51.08 2003 -0.012 -0.007 -0.012 0.007 0.048 0.043 0.008 -0.050 0.021 -0.010 -0.020 -0.016 - 10.45 51.08 2004 -0.015 -0.020 -0.007 0.034 0.073 0.059 0.056 0.003 0.019 -0.001 -0.025 -0.012 - 10.45 51.08 2005 -0.021 -0.007 -0.007 0.020 0.054 0.038 0.025 0.039 0.020 0.010 -0.017 -0.013 - 10.45 51.08 2006 -0.008 -0.008 -0.008 0.004 0.067 0.055 -0.014 0.021 0.023 -0.006 -0.024 -0.024 - 10.45 51.08 2007 -0.030 -0.018 -0.019 0.018 0.068 0.052 0.043 0.051 0.026 -0.001 -0.016 -0.015 - 10.45 51.08 2008 -0.023 -0.017 -0.013 0.014 0.075 0.046 0.030 0.003 0.006 0.000 -0.021 -0.014 - 10.45 51.08 2009 -0.007 -0.011 -0.018 0.023 0.073 0.059 0.029 0.016 0.010 -0.012 -0.026 -0.015 - 10.45 51.08 2010 -0.005 -0.006 -0.012 0.022 0.047 0.057 0.000 0.027 0.023 0.003 -0.021 -0.005 - 10.45 51.08 2011 -0.016 -0.012 -0.008 0.040 0.070 0.033 0.050 0.015 0.022 -0.004 -0.017 -0.020 - 10.45 51.08 2012 -0.022 -0.006 -0.015 0.005 0.056 0.056 0.044 0.025 0.015 -0.001 -0.020 -0.015 diff --git a/rLPJGUESS/inst/extdata/outputsForTests/run_ifdisturb/outDirectory/mnpp.out b/rLPJGUESS/inst/extdata/outputsForTests/run_ifdisturb/outDirectory/mnpp.out deleted file mode 100644 index 3bbb3a1..0000000 --- a/rLPJGUESS/inst/extdata/outputsForTests/run_ifdisturb/outDirectory/mnpp.out +++ /dev/null @@ -1,63 +0,0 @@ - Lon Lat Year Jan Feb Mar Apr May Jun Jul Aug Sep Oct Nov Dec - 10.45 51.08 1951 -0.007 -0.004 -0.001 0.032 0.091 0.104 0.099 0.073 0.050 0.025 -0.004 -0.008 - 10.45 51.08 1952 -0.007 -0.005 -0.001 0.040 0.109 0.104 0.079 0.052 0.041 0.016 -0.005 -0.006 - 10.45 51.08 1953 -0.006 -0.004 0.011 0.072 0.093 0.082 0.086 0.082 0.058 0.022 -0.007 -0.010 - 10.45 51.08 1954 -0.005 -0.003 0.002 0.024 0.099 0.096 0.084 0.073 0.043 0.022 -0.004 -0.011 - 10.45 51.08 1955 -0.005 -0.004 -0.002 0.022 0.100 0.102 0.072 0.062 0.050 0.021 -0.005 -0.009 - 10.45 51.08 1956 -0.008 -0.001 0.001 0.017 0.101 0.090 0.085 0.087 0.057 0.018 -0.007 -0.010 - 10.45 51.08 1957 -0.007 -0.007 0.011 0.054 0.098 0.100 0.061 0.081 0.047 0.020 -0.010 -0.008 - 10.45 51.08 1958 -0.008 -0.007 -0.004 0.017 0.087 0.092 0.092 0.085 0.055 0.020 -0.008 -0.010 - 10.45 51.08 1959 -0.008 -0.004 0.005 0.054 0.115 0.096 0.054 0.066 0.083 0.035 -0.008 -0.009 - 10.45 51.08 1960 -0.008 -0.005 -0.003 0.025 0.089 0.099 0.106 0.076 0.048 0.016 -0.006 -0.009 - 10.45 51.08 1961 -0.007 -0.005 0.005 0.046 0.087 0.104 0.085 0.080 0.047 0.021 -0.010 -0.009 - 10.45 51.08 1962 -0.010 -0.006 -0.004 0.016 0.081 0.109 0.100 0.086 0.063 0.018 -0.005 -0.006 - 10.45 51.08 1963 -0.003 -0.003 -0.002 0.022 0.092 0.099 0.092 0.076 0.055 0.017 -0.005 -0.005 - 10.45 51.08 1964 -0.005 -0.005 -0.005 0.020 0.111 0.118 0.096 0.077 0.059 0.013 -0.013 -0.009 - 10.45 51.08 1965 -0.009 -0.006 -0.003 0.018 0.085 0.102 0.092 0.099 0.059 0.019 -0.007 -0.012 - 10.45 51.08 1966 -0.006 -0.007 -0.002 0.035 0.120 0.098 0.094 0.083 0.051 0.016 -0.009 -0.010 - 10.45 51.08 1967 -0.009 -0.007 0.003 0.020 0.098 0.102 0.097 0.073 0.043 0.018 -0.007 -0.009 - 10.45 51.08 1968 -0.007 -0.007 -0.002 0.032 0.096 0.111 0.101 0.072 0.043 0.013 -0.009 -0.006 - 10.45 51.08 1969 -0.008 -0.005 -0.006 0.009 0.088 0.107 0.089 0.052 0.058 0.023 -0.006 -0.004 - 10.45 51.08 1970 -0.006 -0.006 -0.005 0.004 0.078 0.104 0.099 0.073 0.060 0.008 -0.008 -0.010 - 10.45 51.08 1971 -0.007 -0.008 -0.005 0.019 0.080 0.098 0.110 0.062 0.065 0.024 -0.006 -0.013 - 10.45 51.08 1972 -0.006 -0.007 0.000 0.021 0.084 0.120 0.075 0.078 0.048 0.015 -0.006 -0.009 - 10.45 51.08 1973 -0.008 -0.008 -0.004 0.004 0.085 0.103 0.084 0.089 0.047 0.015 -0.008 -0.009 - 10.45 51.08 1974 -0.012 -0.009 0.001 0.041 0.096 0.112 0.100 0.071 0.056 0.002 -0.014 -0.015 - 10.45 51.08 1975 -0.013 -0.008 -0.006 0.012 0.091 0.097 0.090 0.079 0.046 0.007 -0.007 -0.010 - 10.45 51.08 1976 -0.010 -0.006 -0.005 0.015 0.098 0.098 0.063 0.096 0.042 0.014 -0.008 -0.009 - 10.45 51.08 1977 -0.009 -0.008 -0.001 0.021 0.117 0.080 0.093 0.062 0.042 0.018 -0.007 -0.010 - 10.45 51.08 1978 -0.009 -0.005 -0.005 0.020 0.079 0.099 0.102 0.078 0.045 0.018 -0.011 -0.010 - 10.45 51.08 1979 -0.005 -0.005 -0.006 0.007 0.065 0.097 0.092 0.084 0.052 0.017 -0.008 -0.014 - 10.45 51.08 1980 -0.006 -0.009 -0.007 0.007 0.074 0.110 0.084 0.082 0.054 0.018 -0.013 -0.010 - 10.45 51.08 1981 -0.007 -0.007 0.003 0.040 0.092 0.095 0.084 0.073 0.054 0.014 -0.013 -0.006 - 10.45 51.08 1982 -0.007 -0.006 -0.004 0.019 0.078 0.092 0.083 0.074 0.051 0.015 -0.004 -0.011 - 10.45 51.08 1983 -0.013 -0.005 -0.005 0.029 0.090 0.101 0.086 0.074 0.057 0.017 -0.006 -0.009 - 10.45 51.08 1984 -0.010 -0.007 -0.006 0.010 0.059 0.102 0.089 0.072 0.039 0.019 -0.008 -0.010 - 10.45 51.08 1985 -0.004 -0.004 -0.005 0.020 0.084 0.093 0.103 0.083 0.054 0.014 -0.005 -0.012 - 10.45 51.08 1986 -0.007 -0.002 -0.002 0.005 0.084 0.086 0.088 0.073 0.054 0.025 -0.003 -0.009 - 10.45 51.08 1987 -0.004 -0.005 -0.003 0.023 0.084 0.090 0.092 0.075 0.044 0.019 -0.008 -0.010 - 10.45 51.08 1988 -0.011 -0.007 -0.005 0.018 0.106 0.091 0.102 0.084 0.049 0.018 -0.007 -0.011 - 10.45 51.08 1989 -0.009 -0.007 0.002 0.025 0.124 0.113 0.090 0.079 0.046 0.023 -0.006 -0.012 - 10.45 51.08 1990 -0.009 -0.008 0.014 0.041 0.145 0.094 0.115 0.061 0.045 0.021 -0.013 -0.009 - 10.45 51.08 1991 -0.011 -0.004 0.001 0.038 0.078 0.115 0.080 0.069 0.058 0.021 -0.009 -0.009 - 10.45 51.08 1992 -0.010 -0.008 -0.003 0.023 0.114 0.084 0.083 0.061 0.059 0.004 -0.012 -0.010 - 10.45 51.08 1993 -0.011 -0.006 -0.000 0.047 0.114 0.100 0.087 0.085 0.045 0.010 -0.008 -0.011 - 10.45 51.08 1994 -0.012 -0.006 -0.001 0.030 0.111 0.101 0.063 0.064 0.054 0.013 -0.008 -0.014 - 10.45 51.08 1995 -0.009 -0.009 -0.003 0.023 0.096 0.084 0.072 0.080 0.041 0.019 -0.009 -0.007 - 10.45 51.08 1996 -0.005 -0.004 -0.006 0.018 0.070 0.095 0.098 0.072 0.037 0.016 -0.008 -0.006 - 10.45 51.08 1997 -0.005 -0.009 0.001 0.025 0.096 0.103 0.087 0.071 0.066 0.010 -0.009 -0.011 - 10.45 51.08 1998 -0.012 -0.008 0.001 0.048 0.119 0.101 0.083 0.074 0.041 0.006 -0.009 -0.009 - 10.45 51.08 1999 -0.012 -0.007 -0.003 0.037 0.114 0.116 0.081 0.078 0.053 0.011 -0.007 -0.012 - 10.45 51.08 2000 -0.009 -0.009 -0.002 0.038 0.113 0.087 0.077 0.081 0.043 0.019 -0.010 -0.013 - 10.45 51.08 2001 -0.009 -0.009 -0.006 0.022 0.123 0.101 0.096 0.066 0.038 0.022 -0.009 -0.010 - 10.45 51.08 2002 -0.009 -0.010 0.007 0.042 0.097 0.098 0.068 0.060 0.050 0.008 -0.014 -0.009 - 10.45 51.08 2003 -0.009 -0.005 -0.001 0.031 0.105 0.107 0.080 0.032 0.059 0.006 -0.012 -0.011 - 10.45 51.08 2004 -0.009 -0.011 0.003 0.058 0.103 0.109 0.105 0.078 0.064 0.024 -0.014 -0.009 - 10.45 51.08 2005 -0.011 -0.007 -0.001 0.047 0.093 0.100 0.090 0.079 0.059 0.030 -0.004 -0.010 - 10.45 51.08 2006 -0.006 -0.006 -0.006 0.026 0.116 0.103 0.063 0.067 0.063 0.021 -0.010 -0.015 - 10.45 51.08 2007 -0.016 -0.009 -0.002 0.050 0.118 0.101 0.088 0.089 0.053 0.015 -0.010 -0.011 - 10.45 51.08 2008 -0.014 -0.008 0.000 0.028 0.124 0.110 0.088 0.070 0.044 0.018 -0.013 -0.011 - 10.45 51.08 2009 -0.007 -0.008 -0.007 0.056 0.112 0.100 0.086 0.081 0.051 0.005 -0.017 -0.011 - 10.45 51.08 2010 -0.005 -0.006 -0.002 0.049 0.076 0.113 0.071 0.062 0.050 0.016 -0.012 -0.005 - 10.45 51.08 2011 -0.011 -0.008 0.003 0.079 0.125 0.097 0.095 0.062 0.058 0.019 -0.009 -0.015 - 10.45 51.08 2012 -0.012 -0.005 0.005 0.029 0.109 0.097 0.089 0.081 0.056 0.020 -0.012 -0.012 diff --git a/rLPJGUESS/inst/extdata/outputsForTests/run_ifdisturb/outDirectory/mpet.out b/rLPJGUESS/inst/extdata/outputsForTests/run_ifdisturb/outDirectory/mpet.out deleted file mode 100644 index edd2c3c..0000000 --- a/rLPJGUESS/inst/extdata/outputsForTests/run_ifdisturb/outDirectory/mpet.out +++ /dev/null @@ -1,63 +0,0 @@ - Lon Lat Year Jan Feb Mar Apr May Jun Jul Aug Sep Oct Nov Dec - 10.45 51.08 1951 5.850 11.779 25.156 66.786 85.997 114.574 119.518 98.686 66.333 31.166 10.329 5.148 - 10.45 51.08 1952 5.459 8.925 24.758 69.889 95.929 114.068 130.155 100.417 47.160 26.213 9.005 4.024 - 10.45 51.08 1953 4.712 10.294 41.644 75.922 109.184 98.224 115.288 100.751 64.975 31.379 8.964 5.268 - 10.45 51.08 1954 4.790 8.215 29.019 53.408 103.174 112.877 87.764 90.621 58.906 31.399 10.896 5.094 - 10.45 51.08 1955 5.298 8.763 22.185 55.629 92.981 102.757 95.814 80.972 58.987 28.978 8.468 4.960 - 10.45 51.08 1956 5.897 5.223 26.934 46.839 104.722 89.154 108.184 87.577 59.604 30.132 8.148 4.854 - 10.45 51.08 1957 5.775 12.405 35.287 62.402 89.004 132.084 110.948 88.472 52.658 27.402 8.543 4.301 - 10.45 51.08 1958 5.603 12.525 18.962 43.399 95.960 100.595 116.848 105.267 67.239 30.787 8.316 4.818 - 10.45 51.08 1959 6.068 10.311 31.928 67.763 98.453 118.586 131.622 90.967 75.292 36.500 8.095 4.313 - 10.45 51.08 1960 5.483 9.253 22.677 54.271 92.062 124.839 106.730 88.555 54.000 27.649 10.998 4.351 - 10.45 51.08 1961 4.571 15.201 32.313 54.905 77.149 115.242 100.026 88.375 70.376 31.987 7.256 4.286 - 10.45 51.08 1962 6.111 9.223 20.584 53.901 74.262 113.069 98.190 94.786 62.937 29.462 8.207 3.691 - 10.45 51.08 1963 3.243 6.084 23.777 51.767 93.499 107.234 121.256 93.840 61.217 26.862 11.804 3.443 - 10.45 51.08 1964 4.398 10.296 17.709 54.375 106.179 138.654 127.449 93.829 64.763 25.243 7.187 4.125 - 10.45 51.08 1965 5.511 7.324 22.204 50.706 85.147 107.830 98.923 96.410 57.683 29.723 7.125 4.489 - 10.45 51.08 1966 4.423 12.076 25.365 52.458 105.888 120.732 95.010 91.561 55.067 31.819 7.124 4.361 - 10.45 51.08 1967 5.665 12.072 32.078 48.917 102.874 101.276 133.019 90.186 53.767 33.062 9.156 4.027 - 10.45 51.08 1968 4.610 9.471 30.745 68.741 81.486 109.173 114.713 87.632 52.404 26.874 8.793 3.150 - 10.45 51.08 1969 5.254 8.148 14.611 49.687 92.795 110.065 124.198 96.168 60.964 29.243 10.958 2.740 - 10.45 51.08 1970 4.117 8.295 20.809 39.452 81.461 126.914 111.317 88.548 63.798 24.490 10.346 4.221 - 10.45 51.08 1971 5.383 9.200 20.123 55.301 93.049 89.869 135.951 110.591 61.329 34.208 9.118 4.643 - 10.45 51.08 1972 4.113 9.191 33.668 46.497 82.845 110.054 104.883 86.697 50.096 27.586 9.802 4.544 - 10.45 51.08 1973 4.847 9.766 26.846 40.266 92.152 107.541 110.041 106.815 62.675 27.836 9.385 4.095 - 10.45 51.08 1974 6.027 9.921 28.248 60.890 81.469 98.703 97.286 93.204 63.209 20.576 7.637 5.271 - 10.45 51.08 1975 6.829 10.046 25.015 50.435 88.982 94.569 118.218 115.552 62.172 24.077 8.180 3.852 - 10.45 51.08 1976 5.371 9.102 22.029 53.926 103.099 122.759 135.735 99.582 49.346 27.821 9.416 4.043 - 10.45 51.08 1977 5.339 11.594 28.333 46.553 94.299 86.429 104.564 76.654 52.420 29.388 10.958 4.321 - 10.45 51.08 1978 5.131 8.428 27.601 50.953 79.948 98.687 101.716 88.467 49.591 28.573 8.831 3.954 - 10.45 51.08 1979 4.042 7.372 23.464 43.159 94.687 110.629 91.137 88.396 61.082 29.825 9.149 4.988 - 10.45 51.08 1980 4.240 11.160 18.767 45.566 94.463 102.853 85.545 97.928 60.943 27.623 7.017 4.045 - 10.45 51.08 1981 4.954 7.852 30.906 56.595 91.760 99.083 93.207 88.167 58.921 27.390 8.540 3.374 - 10.45 51.08 1982 4.556 9.652 28.707 57.622 95.887 114.615 119.947 102.601 72.979 27.299 12.004 4.121 - 10.45 51.08 1983 6.597 8.260 25.546 55.504 79.954 111.888 135.665 100.831 62.941 29.756 9.418 3.914 - 10.45 51.08 1984 5.513 8.438 21.821 56.615 69.682 92.833 100.543 91.555 48.753 29.911 10.163 4.434 - 10.45 51.08 1985 4.359 8.976 21.176 55.970 95.093 93.752 124.050 94.821 61.335 30.536 7.843 5.479 - 10.45 51.08 1986 5.549 5.985 26.155 41.033 101.280 111.819 113.057 98.036 52.881 33.070 11.528 5.366 - 10.45 51.08 1987 3.905 8.563 20.456 62.136 79.816 87.870 113.952 84.450 60.695 29.837 9.016 4.416 - 10.45 51.08 1988 6.830 10.233 20.800 59.897 104.177 95.362 117.112 105.403 56.854 27.986 9.247 5.015 - 10.45 51.08 1989 7.302 11.524 36.759 47.069 119.743 113.920 113.567 101.570 60.306 32.165 11.010 5.121 - 10.45 51.08 1990 6.651 17.374 37.712 56.037 116.594 97.376 116.208 110.322 48.399 34.912 9.140 4.517 - 10.45 51.08 1991 5.760 10.368 31.449 57.153 72.314 99.518 134.149 99.484 71.284 32.941 8.860 4.181 - 10.45 51.08 1992 5.019 10.556 27.957 56.159 115.089 104.507 119.927 102.659 59.095 22.519 9.462 4.535 - 10.45 51.08 1993 6.356 7.997 28.896 68.691 109.220 105.453 106.832 96.159 49.651 26.066 6.239 4.786 - 10.45 51.08 1994 6.176 9.456 30.020 54.583 97.627 115.024 141.564 100.384 56.949 27.002 11.255 5.355 - 10.45 51.08 1995 5.920 12.939 26.955 52.662 92.634 91.001 135.386 113.927 49.783 32.258 8.232 3.328 - 10.45 51.08 1996 3.919 9.413 18.838 62.427 72.023 114.485 101.090 91.153 40.981 26.688 9.617 3.755 - 10.45 51.08 1997 4.466 12.874 30.644 54.709 94.746 111.780 102.769 107.619 68.373 27.435 8.321 4.311 - 10.45 51.08 1998 6.639 13.603 28.825 57.577 104.435 109.439 97.229 97.834 49.984 23.644 7.332 4.586 - 10.45 51.08 1999 6.749 9.958 27.473 56.075 104.331 105.516 116.574 95.154 74.749 25.224 8.499 4.709 - 10.45 51.08 2000 5.680 12.802 27.071 65.139 110.678 118.593 79.549 103.687 55.097 29.557 10.274 5.347 - 10.45 51.08 2001 5.754 10.932 20.997 47.458 111.039 93.609 125.155 99.577 44.319 34.082 9.771 3.868 - 10.45 51.08 2002 6.368 13.905 29.979 54.139 88.236 110.022 97.566 92.470 57.825 25.456 8.570 3.954 - 10.45 51.08 2003 5.584 8.739 32.703 66.139 96.746 138.631 115.784 126.117 63.651 23.535 9.990 4.813 - 10.45 51.08 2004 5.299 9.842 29.720 66.223 85.850 102.842 106.631 107.300 67.977 32.659 7.853 4.215 - 10.45 51.08 2005 6.117 8.357 28.623 64.620 99.765 119.499 116.753 84.468 72.705 35.064 11.368 4.293 - 10.45 51.08 2006 4.701 8.365 21.007 55.584 102.426 124.316 155.553 77.637 77.004 33.100 11.784 5.602 - 10.45 51.08 2007 6.928 12.461 34.706 83.692 108.817 118.333 113.435 97.784 54.516 26.188 8.820 4.351 - 10.45 51.08 2008 7.097 13.319 28.306 49.813 105.089 120.350 116.739 92.999 52.056 29.152 7.762 3.875 - 10.45 51.08 2009 4.761 8.675 22.452 77.920 96.121 88.756 111.992 106.182 61.276 23.544 10.413 4.284 - 10.45 51.08 2010 3.752 8.575 28.675 65.517 69.743 120.236 136.833 82.022 51.649 28.013 9.178 3.078 - 10.45 51.08 2011 5.662 10.173 36.062 76.872 111.066 112.218 98.946 88.715 67.063 34.168 9.967 4.933 - 10.45 51.08 2012 5.877 8.464 38.785 50.452 106.665 94.253 108.702 106.266 62.066 30.118 8.801 4.424 diff --git a/rLPJGUESS/inst/extdata/outputsForTests/run_ifdisturb/outDirectory/mra.out b/rLPJGUESS/inst/extdata/outputsForTests/run_ifdisturb/outDirectory/mra.out deleted file mode 100644 index 8b594c3..0000000 --- a/rLPJGUESS/inst/extdata/outputsForTests/run_ifdisturb/outDirectory/mra.out +++ /dev/null @@ -1,63 +0,0 @@ - Lon Lat Year Jan Feb Mar Apr May Jun Jul Aug Sep Oct Nov Dec - 10.45 51.08 1951 0.011 0.011 0.013 0.032 0.064 0.081 0.088 0.081 0.064 0.032 0.020 0.012 - 10.45 51.08 1952 0.009 0.008 0.014 0.046 0.075 0.083 0.093 0.083 0.047 0.030 0.012 0.008 - 10.45 51.08 1953 0.007 0.009 0.023 0.052 0.077 0.079 0.091 0.085 0.064 0.042 0.018 0.014 - 10.45 51.08 1954 0.007 0.005 0.020 0.028 0.073 0.088 0.078 0.082 0.063 0.043 0.020 0.015 - 10.45 51.08 1955 0.007 0.007 0.012 0.030 0.070 0.083 0.085 0.079 0.064 0.037 0.017 0.013 - 10.45 51.08 1956 0.011 0.001 0.016 0.026 0.076 0.076 0.089 0.079 0.064 0.039 0.014 0.014 - 10.45 51.08 1957 0.010 0.016 0.028 0.043 0.067 0.095 0.093 0.082 0.057 0.039 0.018 0.010 - 10.45 51.08 1958 0.010 0.015 0.009 0.025 0.076 0.083 0.096 0.095 0.072 0.043 0.018 0.014 - 10.45 51.08 1959 0.010 0.009 0.025 0.049 0.081 0.089 0.098 0.089 0.075 0.042 0.015 0.012 - 10.45 51.08 1960 0.011 0.009 0.018 0.032 0.073 0.094 0.093 0.086 0.062 0.039 0.024 0.011 - 10.45 51.08 1961 0.008 0.017 0.026 0.050 0.065 0.092 0.088 0.086 0.079 0.049 0.015 0.011 - 10.45 51.08 1962 0.014 0.009 0.010 0.035 0.061 0.090 0.088 0.091 0.066 0.042 0.014 0.007 - 10.45 51.08 1963 0.003 0.003 0.017 0.035 0.074 0.090 0.103 0.089 0.069 0.037 0.026 0.006 - 10.45 51.08 1964 0.006 0.009 0.011 0.037 0.086 0.109 0.107 0.092 0.072 0.034 0.019 0.011 - 10.45 51.08 1965 0.012 0.006 0.015 0.030 0.068 0.091 0.091 0.092 0.066 0.040 0.013 0.014 - 10.45 51.08 1966 0.008 0.016 0.018 0.041 0.089 0.098 0.090 0.090 0.065 0.050 0.013 0.012 - 10.45 51.08 1967 0.012 0.015 0.024 0.029 0.080 0.088 0.111 0.093 0.067 0.055 0.019 0.011 - 10.45 51.08 1968 0.009 0.010 0.021 0.043 0.072 0.096 0.101 0.091 0.066 0.044 0.019 0.007 - 10.45 51.08 1969 0.011 0.007 0.009 0.029 0.077 0.091 0.108 0.090 0.070 0.046 0.026 0.005 - 10.45 51.08 1970 0.006 0.008 0.012 0.025 0.066 0.101 0.098 0.091 0.072 0.038 0.025 0.012 - 10.45 51.08 1971 0.009 0.011 0.014 0.034 0.077 0.084 0.110 0.101 0.067 0.045 0.019 0.016 - 10.45 51.08 1972 0.006 0.011 0.023 0.031 0.070 0.094 0.097 0.088 0.056 0.032 0.020 0.012 - 10.45 51.08 1973 0.009 0.010 0.019 0.022 0.072 0.094 0.099 0.103 0.073 0.036 0.018 0.010 - 10.45 51.08 1974 0.016 0.014 0.022 0.041 0.070 0.087 0.092 0.093 0.072 0.026 0.019 0.019 - 10.45 51.08 1975 0.018 0.011 0.018 0.029 0.074 0.085 0.105 0.108 0.076 0.036 0.017 0.012 - 10.45 51.08 1976 0.013 0.008 0.013 0.030 0.078 0.095 0.106 0.094 0.062 0.043 0.019 0.010 - 10.45 51.08 1977 0.011 0.014 0.025 0.028 0.078 0.081 0.094 0.080 0.059 0.044 0.023 0.012 - 10.45 51.08 1978 0.010 0.008 0.021 0.029 0.065 0.087 0.092 0.087 0.059 0.041 0.018 0.012 - 10.45 51.08 1979 0.005 0.005 0.016 0.026 0.065 0.098 0.087 0.088 0.068 0.040 0.016 0.017 - 10.45 51.08 1980 0.006 0.013 0.015 0.025 0.059 0.090 0.082 0.095 0.070 0.038 0.016 0.011 - 10.45 51.08 1981 0.007 0.008 0.027 0.041 0.077 0.091 0.090 0.088 0.069 0.039 0.019 0.007 - 10.45 51.08 1982 0.008 0.008 0.019 0.030 0.070 0.095 0.105 0.100 0.083 0.044 0.027 0.013 - 10.45 51.08 1983 0.016 0.006 0.020 0.039 0.070 0.093 0.112 0.098 0.071 0.043 0.018 0.011 - 10.45 51.08 1984 0.012 0.008 0.013 0.029 0.056 0.083 0.088 0.092 0.059 0.046 0.020 0.011 - 10.45 51.08 1985 0.004 0.006 0.013 0.031 0.071 0.074 0.094 0.084 0.063 0.039 0.011 0.016 - 10.45 51.08 1986 0.009 0.002 0.015 0.023 0.077 0.080 0.091 0.086 0.053 0.043 0.022 0.012 - 10.45 51.08 1987 0.005 0.007 0.009 0.035 0.060 0.073 0.092 0.078 0.066 0.038 0.018 0.012 - 10.45 51.08 1988 0.015 0.011 0.014 0.031 0.083 0.081 0.098 0.095 0.064 0.041 0.016 0.014 - 10.45 51.08 1989 0.013 0.012 0.026 0.033 0.089 0.090 0.097 0.093 0.068 0.046 0.018 0.014 - 10.45 51.08 1990 0.013 0.021 0.030 0.038 0.096 0.084 0.100 0.098 0.057 0.047 0.019 0.010 - 10.45 51.08 1991 0.013 0.007 0.027 0.038 0.059 0.088 0.109 0.098 0.080 0.044 0.017 0.011 - 10.45 51.08 1992 0.012 0.013 0.021 0.035 0.091 0.093 0.105 0.104 0.069 0.030 0.019 0.012 - 10.45 51.08 1993 0.016 0.007 0.020 0.052 0.096 0.093 0.094 0.094 0.060 0.037 0.011 0.014 - 10.45 51.08 1994 0.015 0.009 0.026 0.039 0.087 0.096 0.118 0.101 0.068 0.034 0.026 0.018 - 10.45 51.08 1995 0.011 0.017 0.018 0.036 0.077 0.080 0.110 0.107 0.061 0.052 0.017 0.007 - 10.45 51.08 1996 0.005 0.007 0.011 0.039 0.062 0.092 0.091 0.093 0.050 0.040 0.022 0.008 - 10.45 51.08 1997 0.006 0.016 0.025 0.031 0.079 0.092 0.096 0.106 0.076 0.038 0.017 0.013 - 10.45 51.08 1998 0.016 0.018 0.022 0.048 0.091 0.098 0.092 0.097 0.063 0.036 0.013 0.012 - 10.45 51.08 1999 0.016 0.010 0.022 0.042 0.089 0.096 0.106 0.097 0.087 0.040 0.018 0.014 - 10.45 51.08 2000 0.011 0.016 0.023 0.049 0.098 0.098 0.084 0.105 0.070 0.049 0.024 0.017 - 10.45 51.08 2001 0.012 0.014 0.018 0.033 0.094 0.086 0.110 0.106 0.058 0.056 0.020 0.011 - 10.45 51.08 2002 0.013 0.020 0.024 0.040 0.084 0.100 0.096 0.101 0.069 0.037 0.021 0.011 - 10.45 51.08 2003 0.011 0.006 0.025 0.040 0.090 0.113 0.108 0.112 0.074 0.031 0.023 0.013 - 10.45 51.08 2004 0.010 0.015 0.022 0.050 0.076 0.093 0.101 0.108 0.077 0.048 0.019 0.011 - 10.45 51.08 2005 0.015 0.008 0.021 0.048 0.083 0.099 0.109 0.091 0.084 0.054 0.024 0.012 - 10.45 51.08 2006 0.007 0.008 0.014 0.039 0.091 0.101 0.126 0.088 0.091 0.057 0.030 0.019 - 10.45 51.08 2007 0.021 0.017 0.027 0.056 0.098 0.107 0.107 0.101 0.067 0.041 0.018 0.013 - 10.45 51.08 2008 0.019 0.017 0.022 0.037 0.097 0.108 0.111 0.104 0.066 0.045 0.022 0.012 - 10.45 51.08 2009 0.008 0.010 0.021 0.063 0.092 0.089 0.110 0.113 0.078 0.039 0.029 0.013 - 10.45 51.08 2010 0.006 0.009 0.025 0.048 0.067 0.105 0.124 0.094 0.067 0.041 0.024 0.005 - 10.45 51.08 2011 0.014 0.012 0.025 0.069 0.099 0.103 0.101 0.101 0.084 0.049 0.019 0.018 - 10.45 51.08 2012 0.015 0.008 0.033 0.042 0.099 0.095 0.109 0.114 0.079 0.046 0.022 0.015 diff --git a/rLPJGUESS/inst/extdata/outputsForTests/run_ifdisturb/outDirectory/mrh.out b/rLPJGUESS/inst/extdata/outputsForTests/run_ifdisturb/outDirectory/mrh.out deleted file mode 100644 index 8475d4f..0000000 --- a/rLPJGUESS/inst/extdata/outputsForTests/run_ifdisturb/outDirectory/mrh.out +++ /dev/null @@ -1,63 +0,0 @@ - Lon Lat Year Jan Feb Mar Apr May Jun Jul Aug Sep Oct Nov Dec - 10.45 51.08 1951 0.012 0.008 0.009 0.028 0.057 0.054 0.078 0.067 0.064 0.029 0.015 0.009 - 10.45 51.08 1952 0.008 0.001 0.010 0.037 0.050 0.069 0.110 0.095 0.034 0.017 0.009 0.002 - 10.45 51.08 1953 0.002 0.004 0.018 0.047 0.071 0.069 0.075 0.077 0.065 0.043 0.017 0.012 - 10.45 51.08 1954 0.002 0.000 0.013 0.022 0.056 0.086 0.056 0.057 0.053 0.027 0.015 0.009 - 10.45 51.08 1955 0.002 0.004 0.003 0.021 0.053 0.062 0.068 0.052 0.051 0.029 0.010 0.006 - 10.45 51.08 1956 0.009 0.000 0.005 0.019 0.052 0.053 0.055 0.054 0.049 0.032 0.009 0.008 - 10.45 51.08 1957 0.003 0.013 0.022 0.030 0.045 0.076 0.082 0.055 0.040 0.021 0.013 0.004 - 10.45 51.08 1958 0.007 0.010 0.003 0.014 0.052 0.056 0.069 0.070 0.060 0.030 0.010 0.006 - 10.45 51.08 1959 0.008 0.002 0.021 0.037 0.055 0.063 0.097 0.070 0.055 0.031 0.009 0.004 - 10.45 51.08 1960 0.007 0.003 0.012 0.027 0.041 0.070 0.071 0.057 0.039 0.019 0.012 0.006 - 10.45 51.08 1961 0.002 0.009 0.024 0.029 0.033 0.049 0.079 0.058 0.067 0.047 0.014 0.004 - 10.45 51.08 1962 0.007 0.006 0.001 0.023 0.039 0.066 0.058 0.073 0.044 0.033 0.010 0.001 - 10.45 51.08 1963 0.000 0.000 0.006 0.023 0.049 0.065 0.072 0.053 0.043 0.021 0.013 0.002 - 10.45 51.08 1964 0.000 0.002 0.002 0.023 0.049 0.085 0.081 0.065 0.053 0.023 0.009 0.006 - 10.45 51.08 1965 0.005 0.001 0.004 0.024 0.038 0.050 0.061 0.055 0.038 0.028 0.007 0.005 - 10.45 51.08 1966 0.003 0.007 0.014 0.023 0.057 0.066 0.042 0.049 0.036 0.034 0.005 0.004 - 10.45 51.08 1967 0.005 0.010 0.017 0.020 0.053 0.043 0.076 0.065 0.034 0.032 0.011 0.003 - 10.45 51.08 1968 0.002 0.007 0.007 0.031 0.040 0.059 0.076 0.060 0.038 0.021 0.009 0.001 - 10.45 51.08 1969 0.003 0.003 0.001 0.015 0.042 0.046 0.077 0.078 0.032 0.026 0.015 0.001 - 10.45 51.08 1970 0.000 0.000 0.003 0.014 0.037 0.070 0.072 0.046 0.041 0.021 0.010 0.005 - 10.45 51.08 1971 0.002 0.009 0.005 0.026 0.053 0.050 0.071 0.081 0.043 0.027 0.009 0.005 - 10.45 51.08 1972 0.003 0.004 0.013 0.023 0.033 0.044 0.060 0.040 0.030 0.016 0.011 0.004 - 10.45 51.08 1973 0.002 0.006 0.009 0.016 0.043 0.066 0.080 0.066 0.047 0.016 0.007 0.001 - 10.45 51.08 1974 0.010 0.010 0.011 0.030 0.033 0.041 0.045 0.058 0.045 0.014 0.007 0.007 - 10.45 51.08 1975 0.014 0.007 0.011 0.014 0.040 0.046 0.068 0.077 0.047 0.025 0.008 0.004 - 10.45 51.08 1976 0.009 0.001 0.005 0.025 0.052 0.059 0.105 0.067 0.051 0.034 0.011 0.005 - 10.45 51.08 1977 0.002 0.010 0.020 0.015 0.046 0.055 0.058 0.044 0.038 0.026 0.015 0.004 - 10.45 51.08 1978 0.008 0.002 0.015 0.024 0.039 0.077 0.056 0.064 0.037 0.022 0.011 0.004 - 10.45 51.08 1979 0.000 0.000 0.007 0.018 0.042 0.085 0.055 0.066 0.051 0.030 0.007 0.008 - 10.45 51.08 1980 0.002 0.008 0.010 0.019 0.037 0.067 0.051 0.084 0.055 0.025 0.008 0.004 - 10.45 51.08 1981 0.003 0.003 0.014 0.031 0.039 0.059 0.074 0.054 0.044 0.021 0.009 0.003 - 10.45 51.08 1982 0.001 0.004 0.011 0.025 0.048 0.089 0.087 0.085 0.065 0.034 0.017 0.007 - 10.45 51.08 1983 0.014 0.004 0.013 0.019 0.038 0.058 0.092 0.070 0.050 0.032 0.011 0.003 - 10.45 51.08 1984 0.012 0.004 0.005 0.017 0.030 0.043 0.053 0.055 0.036 0.023 0.010 0.005 - 10.45 51.08 1985 0.000 0.002 0.007 0.031 0.057 0.061 0.074 0.069 0.051 0.046 0.008 0.008 - 10.45 51.08 1986 0.004 0.001 0.006 0.013 0.056 0.055 0.087 0.078 0.030 0.028 0.012 0.007 - 10.45 51.08 1987 0.002 0.001 0.001 0.025 0.037 0.036 0.071 0.048 0.049 0.024 0.011 0.003 - 10.45 51.08 1988 0.013 0.009 0.007 0.023 0.062 0.068 0.063 0.080 0.055 0.039 0.012 0.005 - 10.45 51.08 1989 0.011 0.008 0.018 0.026 0.050 0.060 0.079 0.076 0.054 0.030 0.012 0.004 - 10.45 51.08 1990 0.007 0.015 0.022 0.022 0.059 0.045 0.063 0.082 0.039 0.031 0.013 0.004 - 10.45 51.08 1991 0.010 0.001 0.021 0.026 0.031 0.053 0.089 0.061 0.060 0.037 0.011 0.003 - 10.45 51.08 1992 0.008 0.006 0.014 0.020 0.057 0.068 0.062 0.080 0.038 0.021 0.008 0.005 - 10.45 51.08 1993 0.007 0.001 0.010 0.030 0.071 0.050 0.047 0.057 0.032 0.022 0.004 0.003 - 10.45 51.08 1994 0.009 0.004 0.014 0.020 0.050 0.052 0.080 0.075 0.032 0.017 0.013 0.007 - 10.45 51.08 1995 0.004 0.012 0.012 0.021 0.040 0.039 0.069 0.074 0.031 0.025 0.009 0.001 - 10.45 51.08 1996 0.000 0.000 0.004 0.022 0.034 0.061 0.045 0.053 0.026 0.020 0.011 0.002 - 10.45 51.08 1997 0.000 0.008 0.018 0.017 0.049 0.067 0.057 0.068 0.049 0.024 0.007 0.004 - 10.45 51.08 1998 0.012 0.007 0.015 0.027 0.050 0.058 0.053 0.069 0.028 0.015 0.006 0.002 - 10.45 51.08 1999 0.011 0.003 0.012 0.025 0.048 0.049 0.056 0.060 0.057 0.027 0.009 0.005 - 10.45 51.08 2000 0.006 0.008 0.012 0.026 0.069 0.066 0.046 0.058 0.033 0.022 0.013 0.009 - 10.45 51.08 2001 0.005 0.009 0.009 0.016 0.045 0.046 0.053 0.076 0.035 0.029 0.010 0.003 - 10.45 51.08 2002 0.002 0.016 0.012 0.018 0.040 0.052 0.052 0.051 0.040 0.014 0.008 0.003 - 10.45 51.08 2003 0.004 0.002 0.011 0.024 0.057 0.064 0.072 0.082 0.039 0.016 0.008 0.005 - 10.45 51.08 2004 0.006 0.008 0.010 0.024 0.030 0.051 0.048 0.074 0.045 0.025 0.012 0.003 - 10.45 51.08 2005 0.009 0.001 0.006 0.027 0.039 0.062 0.066 0.039 0.039 0.021 0.013 0.003 - 10.45 51.08 2006 0.002 0.002 0.002 0.022 0.049 0.048 0.077 0.047 0.040 0.026 0.014 0.009 - 10.45 51.08 2007 0.014 0.009 0.016 0.032 0.050 0.049 0.045 0.038 0.028 0.016 0.007 0.004 - 10.45 51.08 2008 0.009 0.010 0.013 0.015 0.049 0.064 0.058 0.067 0.038 0.017 0.008 0.003 - 10.45 51.08 2009 0.001 0.004 0.011 0.034 0.039 0.042 0.056 0.065 0.041 0.017 0.009 0.004 - 10.45 51.08 2010 0.000 0.000 0.010 0.028 0.029 0.056 0.071 0.035 0.027 0.014 0.009 0.000 - 10.45 51.08 2011 0.005 0.004 0.011 0.039 0.055 0.064 0.045 0.047 0.036 0.023 0.008 0.006 - 10.45 51.08 2012 0.010 0.001 0.020 0.025 0.053 0.041 0.046 0.056 0.041 0.021 0.008 0.003 diff --git a/rLPJGUESS/inst/extdata/outputsForTests/run_ifdisturb/outDirectory/mrunoff.out b/rLPJGUESS/inst/extdata/outputsForTests/run_ifdisturb/outDirectory/mrunoff.out deleted file mode 100644 index 45d4a7c..0000000 --- a/rLPJGUESS/inst/extdata/outputsForTests/run_ifdisturb/outDirectory/mrunoff.out +++ /dev/null @@ -1,63 +0,0 @@ - Lon Lat Year Jan Feb Mar Apr May Jun Jul Aug Sep Oct Nov Dec - 10.45 51.08 1951 6.861 21.103 22.211 3.978 0.423 73.079 0.000 8.086 2.240 0.388 43.074 9.183 - 10.45 51.08 1952 20.241 31.252 54.275 24.878 11.182 0.728 0.000 0.000 67.200 45.238 65.669 28.519 - 10.45 51.08 1953 31.130 48.814 0.459 0.000 0.000 5.762 0.000 0.000 0.000 0.000 0.000 4.494 - 10.45 51.08 1954 30.743 12.988 8.998 22.804 1.127 0.000 7.091 10.510 11.018 14.209 10.045 33.104 - 10.45 51.08 1955 30.804 29.012 37.955 16.523 0.733 0.052 10.985 19.640 4.184 5.762 10.565 36.074 - 10.45 51.08 1956 19.596 0.000 50.213 31.952 1.185 31.101 93.313 15.320 2.729 13.696 19.806 11.844 - 10.45 51.08 1957 23.704 28.134 16.643 5.516 0.000 0.000 0.000 0.000 15.772 9.186 21.369 21.710 - 10.45 51.08 1958 38.084 20.810 72.152 18.593 12.308 27.068 24.053 0.000 2.149 17.293 19.280 30.368 - 10.45 51.08 1959 18.503 4.550 4.672 3.767 0.930 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1960 22.129 8.603 16.247 7.308 19.485 0.000 0.000 0.000 0.000 68.560 24.170 32.593 - 10.45 51.08 1961 45.776 33.412 11.583 45.273 43.757 43.958 0.000 0.000 0.000 0.000 0.000 14.628 - 10.45 51.08 1962 21.012 22.478 22.329 12.651 10.547 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1963 0.000 0.000 35.676 8.898 2.726 0.383 5.108 6.750 1.424 12.224 25.069 3.216 - 10.45 51.08 1964 6.756 22.671 11.090 22.150 37.940 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1965 0.000 7.248 38.668 16.095 6.730 14.469 0.000 0.000 0.000 0.000 13.984 61.835 - 10.45 51.08 1966 16.923 33.503 14.606 24.376 0.000 0.000 28.271 23.410 2.835 40.350 30.860 44.463 - 10.45 51.08 1967 19.236 15.288 25.538 9.260 1.119 11.025 0.000 0.000 5.296 8.350 11.503 19.526 - 10.45 51.08 1968 28.483 23.058 23.673 4.847 8.195 0.000 0.000 0.000 0.000 23.767 14.942 5.952 - 10.45 51.08 1969 19.895 11.100 18.125 65.064 38.941 18.435 0.000 0.000 1.830 0.000 0.000 0.000 - 10.45 51.08 1970 7.168 65.801 25.263 31.248 22.159 1.388 0.000 13.785 0.000 15.956 21.603 14.304 - 10.45 51.08 1971 17.802 16.565 8.591 6.370 0.000 5.783 0.259 0.000 0.000 0.000 12.625 0.000 - 10.45 51.08 1972 0.000 0.000 7.813 16.815 7.944 10.357 25.848 42.989 0.376 3.584 16.548 1.851 - 10.45 51.08 1973 11.669 15.302 18.539 12.975 6.735 0.000 0.000 0.000 0.000 8.434 2.866 27.860 - 10.45 51.08 1974 13.783 18.371 13.769 0.000 3.632 7.536 13.887 0.000 0.000 44.241 14.247 52.552 - 10.45 51.08 1975 7.825 12.259 15.673 21.016 2.318 0.353 0.081 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1976 47.193 10.421 8.257 2.299 0.000 6.343 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1977 0.000 16.196 25.313 12.533 0.736 6.199 0.984 60.153 6.623 6.650 59.026 31.018 - 10.45 51.08 1978 11.693 8.374 18.093 4.600 8.317 0.000 0.000 0.000 0.000 11.326 1.241 20.799 - 10.45 51.08 1979 2.058 3.461 108.993 19.655 3.709 0.000 0.000 0.000 0.000 0.000 10.809 33.160 - 10.45 51.08 1980 16.624 19.574 13.400 19.578 1.391 0.000 4.121 0.000 0.000 0.000 3.891 22.157 - 10.45 51.08 1981 15.164 19.703 31.304 4.235 13.810 2.199 0.419 33.716 3.184 24.518 35.094 33.353 - 10.45 51.08 1982 39.965 1.548 13.000 4.999 2.759 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1983 0.000 0.000 10.801 77.369 24.730 0.079 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1984 1.663 22.808 9.165 29.551 49.670 10.232 0.000 5.671 12.352 22.911 27.103 7.107 - 10.45 51.08 1985 17.795 7.942 13.268 6.349 2.888 1.034 0.229 0.000 0.000 0.000 0.000 8.571 - 10.45 51.08 1986 25.828 1.774 38.823 40.482 9.260 13.326 0.000 0.000 0.000 17.447 4.131 24.065 - 10.45 51.08 1987 32.986 26.201 69.064 7.459 4.808 50.412 3.210 16.769 30.854 7.902 28.922 20.124 - 10.45 51.08 1988 17.920 21.338 55.742 16.785 0.000 0.000 0.000 0.000 0.000 0.000 0.000 38.452 - 10.45 51.08 1989 13.687 11.354 21.799 11.455 0.000 0.000 0.000 0.000 0.000 0.000 6.996 30.546 - 10.45 51.08 1990 9.338 15.886 16.700 14.926 0.000 3.665 0.000 0.000 0.000 0.000 5.919 21.116 - 10.45 51.08 1991 16.176 7.502 8.501 1.524 2.872 0.000 0.000 12.811 0.000 0.000 0.000 0.000 - 10.45 51.08 1992 1.833 10.964 52.068 9.019 3.005 0.000 29.373 0.000 0.000 0.000 34.578 34.914 - 10.45 51.08 1993 19.391 17.031 11.398 3.774 0.000 1.198 28.029 2.695 5.402 12.931 13.275 65.703 - 10.45 51.08 1994 27.886 15.991 28.810 70.640 5.895 3.022 0.000 0.000 4.697 4.703 21.630 20.101 - 10.45 51.08 1995 33.297 31.928 11.336 13.921 3.137 36.089 10.244 0.000 19.637 3.935 13.307 9.969 - 10.45 51.08 1996 1.671 16.116 12.783 4.601 20.255 0.507 12.904 15.421 12.859 17.339 30.007 38.343 - 10.45 51.08 1997 8.928 33.103 29.183 12.448 2.153 0.000 33.525 0.000 0.000 0.797 9.370 26.200 - 10.45 51.08 1998 13.014 7.915 21.589 12.061 1.309 0.000 0.000 0.000 8.185 70.927 49.326 6.194 - 10.45 51.08 1999 17.025 16.392 18.501 11.001 0.000 3.206 15.898 0.000 0.000 0.000 10.276 31.441 - 10.45 51.08 2000 24.395 40.401 42.474 5.383 0.000 0.000 0.000 0.000 0.000 1.867 11.728 7.951 - 10.45 51.08 2001 11.478 9.773 61.925 18.920 2.877 0.000 10.124 0.000 0.000 6.151 39.981 21.262 - 10.45 51.08 2002 10.091 29.197 30.111 10.877 14.161 28.377 15.449 8.498 2.586 29.935 77.675 86.326 - 10.45 51.08 2003 25.596 9.710 11.117 2.064 1.255 2.836 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 2004 17.920 13.686 10.228 6.214 77.116 0.000 2.470 0.000 0.000 0.000 0.038 9.500 - 10.45 51.08 2005 8.931 26.893 24.072 7.952 3.355 0.000 0.000 0.000 0.000 0.000 8.430 15.048 - 10.45 51.08 2006 10.623 10.439 25.635 18.925 0.522 6.427 12.551 0.000 0.000 0.000 10.814 9.688 - 10.45 51.08 2007 24.665 18.540 25.558 1.516 0.000 5.615 24.971 74.892 63.757 2.775 33.754 23.199 - 10.45 51.08 2008 16.686 9.451 28.177 30.857 1.702 0.000 0.000 0.000 0.000 0.000 0.000 25.625 - 10.45 51.08 2009 5.217 20.407 27.523 2.617 14.242 3.592 1.784 0.000 0.000 7.700 42.739 69.149 - 10.45 51.08 2010 12.326 46.059 12.541 2.611 32.041 4.586 16.756 42.456 21.589 5.247 62.467 9.521 - 10.45 51.08 2011 97.217 7.832 4.030 0.915 0.000 0.000 0.000 0.000 0.000 0.000 0.000 10.019 - 10.45 51.08 2012 38.513 7.398 3.769 1.048 0.000 1.721 23.480 0.000 0.000 0.000 8.313 35.365 diff --git a/rLPJGUESS/inst/extdata/outputsForTests/run_ifdisturb/outDirectory/mwcont_lower.out b/rLPJGUESS/inst/extdata/outputsForTests/run_ifdisturb/outDirectory/mwcont_lower.out deleted file mode 100644 index a9f7025..0000000 --- a/rLPJGUESS/inst/extdata/outputsForTests/run_ifdisturb/outDirectory/mwcont_lower.out +++ /dev/null @@ -1,63 +0,0 @@ - Lon Lat Year Jan Feb Mar Apr May Jun Jul Aug Sep Oct Nov Dec - 10.45 51.08 1951 0.971 1.000 1.000 0.996 0.987 0.986 0.981 0.989 0.985 0.986 0.999 1.000 - 10.45 51.08 1952 1.000 1.000 0.997 0.980 0.991 0.971 0.890 0.784 0.866 0.996 0.999 0.999 - 10.45 51.08 1953 1.000 0.999 0.996 0.983 0.932 0.911 0.951 0.959 0.914 0.900 0.936 0.965 - 10.45 51.08 1954 0.999 0.999 1.000 0.997 0.973 0.910 0.939 0.993 0.994 0.996 1.000 1.000 - 10.45 51.08 1955 1.000 0.998 0.997 0.997 0.991 0.977 0.985 0.983 0.985 0.995 1.000 1.000 - 10.45 51.08 1956 1.000 1.000 0.999 0.997 0.987 0.985 0.991 0.994 0.993 0.997 1.000 1.000 - 10.45 51.08 1957 1.000 1.000 0.999 0.992 0.977 0.939 0.917 0.962 0.997 0.996 0.999 1.000 - 10.45 51.08 1958 1.000 1.000 0.996 0.997 0.994 0.968 0.964 0.947 0.966 0.995 1.000 1.000 - 10.45 51.08 1959 1.000 1.000 0.998 0.994 0.973 0.948 0.863 0.780 0.718 0.660 0.748 0.829 - 10.45 51.08 1960 0.964 1.000 0.999 0.997 0.988 0.956 0.884 0.866 0.912 0.977 1.000 1.000 - 10.45 51.08 1961 1.000 1.000 0.998 0.997 0.995 0.983 0.906 0.885 0.860 0.828 0.848 0.962 - 10.45 51.08 1962 1.000 1.000 0.996 0.997 0.996 0.949 0.887 0.831 0.798 0.787 0.791 0.848 - 10.45 51.08 1963 0.889 0.896 0.970 0.997 0.988 0.964 0.964 0.957 0.974 0.998 1.000 1.000 - 10.45 51.08 1964 1.000 1.000 1.000 0.997 0.986 0.927 0.823 0.756 0.712 0.709 0.761 0.822 - 10.45 51.08 1965 0.923 0.994 0.999 0.998 0.993 0.980 0.963 0.972 0.972 0.984 0.996 1.000 - 10.45 51.08 1966 1.000 0.997 0.999 0.998 0.972 0.923 0.984 0.979 0.993 0.986 0.999 1.000 - 10.45 51.08 1967 1.000 1.000 0.999 0.997 0.974 0.985 0.951 0.899 0.958 0.997 0.999 1.000 - 10.45 51.08 1968 1.000 0.999 0.999 0.991 0.992 0.972 0.914 0.868 0.913 0.995 0.999 1.000 - 10.45 51.08 1969 1.000 1.000 1.000 0.997 0.990 0.974 0.927 0.829 0.861 0.872 0.928 0.973 - 10.45 51.08 1970 0.985 1.000 1.000 0.998 0.997 0.961 0.904 0.935 0.974 0.994 1.000 1.000 - 10.45 51.08 1971 1.000 1.000 1.000 0.995 0.973 0.982 0.933 0.802 0.730 0.714 0.757 0.866 - 10.45 51.08 1972 0.904 0.942 0.985 0.998 0.991 0.987 0.983 0.990 0.985 0.992 0.999 1.000 - 10.45 51.08 1973 1.000 1.000 0.999 0.998 0.988 0.940 0.862 0.823 0.768 0.852 0.982 1.000 - 10.45 51.08 1974 1.000 1.000 0.998 0.976 0.988 0.993 0.995 0.958 0.961 0.985 1.000 1.000 - 10.45 51.08 1975 1.000 1.000 1.000 0.997 0.984 0.956 0.957 0.860 0.815 0.841 0.897 0.985 - 10.45 51.08 1976 1.000 1.000 1.000 0.996 0.972 0.945 0.814 0.725 0.659 0.664 0.720 0.809 - 10.45 51.08 1977 0.896 0.996 0.998 0.998 0.987 0.951 0.970 0.994 0.995 0.996 0.999 1.000 - 10.45 51.08 1978 1.000 1.000 1.000 0.994 0.990 0.934 0.906 0.889 0.925 0.995 0.997 1.000 - 10.45 51.08 1979 1.000 1.000 0.999 0.997 0.992 0.964 0.945 0.962 0.930 0.934 0.988 1.000 - 10.45 51.08 1980 1.000 1.000 1.000 0.998 0.977 0.937 0.985 0.928 0.882 0.895 0.964 1.000 - 10.45 51.08 1981 1.000 0.999 0.999 0.989 0.988 0.990 0.972 0.965 0.974 0.998 1.000 0.999 - 10.45 51.08 1982 1.000 0.999 1.000 0.995 0.984 0.902 0.834 0.757 0.681 0.659 0.695 0.762 - 10.45 51.08 1983 0.848 0.945 0.989 0.996 0.995 0.976 0.891 0.810 0.774 0.781 0.783 0.831 - 10.45 51.08 1984 0.930 1.000 1.000 0.994 0.994 0.985 0.981 0.984 0.987 0.998 0.996 1.000 - 10.45 51.08 1985 1.000 1.000 1.000 0.995 0.980 0.962 0.969 0.935 0.926 0.906 0.912 0.965 - 10.45 51.08 1986 1.000 1.000 1.000 0.996 0.993 0.989 0.923 0.879 0.928 0.964 0.999 1.000 - 10.45 51.08 1987 0.999 1.000 0.999 0.996 0.993 0.994 0.973 0.996 0.994 0.997 1.000 1.000 - 10.45 51.08 1988 1.000 1.000 0.999 0.996 0.966 0.904 0.926 0.913 0.864 0.854 0.876 0.983 - 10.45 51.08 1989 1.000 1.000 0.999 0.997 0.969 0.923 0.868 0.820 0.768 0.794 0.895 0.983 - 10.45 51.08 1990 1.000 1.000 0.997 0.998 0.955 0.916 0.934 0.838 0.833 0.861 0.943 1.000 - 10.45 51.08 1991 1.000 1.000 0.999 0.993 0.993 0.959 0.916 0.880 0.831 0.802 0.827 0.876 - 10.45 51.08 1992 0.984 1.000 0.999 0.997 0.974 0.904 0.901 0.850 0.858 0.898 0.993 1.000 - 10.45 51.08 1993 1.000 0.999 0.998 0.993 0.934 0.969 0.977 0.980 0.988 0.999 1.000 1.000 - 10.45 51.08 1994 1.000 1.000 0.999 0.994 0.976 0.982 0.940 0.891 0.978 0.993 0.999 1.000 - 10.45 51.08 1995 1.000 1.000 0.999 0.998 0.987 0.994 0.965 0.926 0.966 0.991 1.000 1.000 - 10.45 51.08 1996 1.000 1.000 1.000 0.996 0.996 0.972 0.979 0.980 0.997 0.999 1.000 1.000 - 10.45 51.08 1997 0.999 1.000 0.999 0.998 0.991 0.934 0.914 0.952 0.928 0.951 1.000 1.000 - 10.45 51.08 1998 1.000 1.000 0.999 0.996 0.964 0.940 0.954 0.935 0.964 0.999 1.000 1.000 - 10.45 51.08 1999 1.000 1.000 0.999 0.997 0.969 0.980 0.983 0.948 0.920 0.918 0.976 1.000 - 10.45 51.08 2000 1.000 1.000 0.998 0.993 0.949 0.876 0.849 0.830 0.871 0.969 1.000 1.000 - 10.45 51.08 2001 1.000 1.000 0.998 0.997 0.981 0.966 0.982 0.922 0.926 0.994 1.000 1.000 - 10.45 51.08 2002 1.000 1.000 0.998 0.991 0.995 0.984 0.968 0.988 0.981 0.999 1.000 1.000 - 10.45 51.08 2003 1.000 1.000 0.999 0.993 0.981 0.982 0.925 0.801 0.727 0.770 0.821 0.931 - 10.45 51.08 2004 0.998 0.999 0.998 0.994 0.990 0.962 0.977 0.931 0.879 0.874 0.921 0.999 - 10.45 51.08 2005 0.999 1.000 0.999 0.996 0.990 0.936 0.860 0.901 0.919 0.961 0.998 1.000 - 10.45 51.08 2006 1.000 1.000 1.000 0.997 0.969 0.967 0.871 0.845 0.926 0.938 0.993 1.000 - 10.45 51.08 2007 1.000 1.000 1.000 0.982 0.929 0.938 0.987 0.987 0.993 0.995 1.000 1.000 - 10.45 51.08 2008 1.000 1.000 0.999 0.997 0.966 0.893 0.861 0.803 0.760 0.813 0.926 1.000 - 10.45 51.08 2009 1.000 1.000 1.000 0.993 0.993 0.985 0.977 0.934 0.886 0.965 0.998 1.000 - 10.45 51.08 2010 1.000 1.000 0.998 0.991 0.989 0.961 0.858 0.950 0.996 0.994 0.998 1.000 - 10.45 51.08 2011 1.000 1.000 0.998 0.981 0.919 0.820 0.840 0.857 0.890 0.905 0.924 0.984 - 10.45 51.08 2012 1.000 1.000 0.997 0.993 0.967 0.955 0.993 0.952 0.921 0.922 0.977 1.000 diff --git a/rLPJGUESS/inst/extdata/outputsForTests/run_ifdisturb/outDirectory/mwcont_upper.out b/rLPJGUESS/inst/extdata/outputsForTests/run_ifdisturb/outDirectory/mwcont_upper.out deleted file mode 100644 index d7ca6c7..0000000 --- a/rLPJGUESS/inst/extdata/outputsForTests/run_ifdisturb/outDirectory/mwcont_upper.out +++ /dev/null @@ -1,63 +0,0 @@ - Lon Lat Year Jan Feb Mar Apr May Jun Jul Aug Sep Oct Nov Dec - 10.45 51.08 1951 0.849 0.866 0.831 0.547 0.371 0.753 0.537 0.660 0.531 0.500 0.841 0.909 - 10.45 51.08 1952 0.914 0.929 0.913 0.748 0.692 0.462 0.200 0.155 0.765 0.923 0.924 0.939 - 10.45 51.08 1953 0.922 0.945 0.725 0.424 0.326 0.514 0.606 0.447 0.287 0.373 0.617 0.611 - 10.45 51.08 1954 0.802 0.883 0.759 0.670 0.426 0.341 0.642 0.665 0.582 0.732 0.726 0.808 - 10.45 51.08 1955 0.942 0.931 0.921 0.734 0.463 0.449 0.645 0.797 0.613 0.569 0.795 0.861 - 10.45 51.08 1956 0.911 0.862 0.836 0.729 0.566 0.736 0.801 0.644 0.518 0.598 0.784 0.801 - 10.45 51.08 1957 0.898 0.847 0.743 0.551 0.446 0.452 0.593 0.612 0.561 0.837 0.886 0.905 - 10.45 51.08 1958 0.928 0.851 0.899 0.753 0.627 0.677 0.629 0.541 0.472 0.724 0.915 0.900 - 10.45 51.08 1959 0.915 0.821 0.638 0.543 0.462 0.499 0.123 0.411 0.249 0.108 0.772 0.818 - 10.45 51.08 1960 0.886 0.895 0.780 0.538 0.627 0.453 0.281 0.497 0.687 0.885 0.873 0.900 - 10.45 51.08 1961 0.940 0.881 0.653 0.772 0.817 0.736 0.309 0.422 0.334 0.226 0.474 0.817 - 10.45 51.08 1962 0.904 0.902 0.916 0.696 0.556 0.301 0.395 0.317 0.406 0.312 0.322 0.576 - 10.45 51.08 1963 0.675 0.679 0.849 0.722 0.483 0.467 0.527 0.666 0.500 0.671 0.774 0.890 - 10.45 51.08 1964 0.880 0.877 0.767 0.711 0.676 0.405 0.318 0.413 0.350 0.466 0.620 0.707 - 10.45 51.08 1965 0.845 0.894 0.901 0.645 0.617 0.621 0.514 0.510 0.515 0.430 0.628 0.909 - 10.45 51.08 1966 0.908 0.932 0.752 0.690 0.475 0.488 0.818 0.635 0.638 0.544 0.917 0.920 - 10.45 51.08 1967 0.921 0.819 0.742 0.622 0.423 0.685 0.472 0.470 0.713 0.685 0.711 0.793 - 10.45 51.08 1968 0.921 0.889 0.851 0.560 0.608 0.449 0.329 0.396 0.604 0.826 0.818 0.787 - 10.45 51.08 1969 0.801 0.819 0.903 0.827 0.741 0.728 0.390 0.276 0.711 0.531 0.636 0.716 - 10.45 51.08 1970 0.746 0.936 0.901 0.824 0.683 0.400 0.376 0.738 0.555 0.672 0.893 0.875 - 10.45 51.08 1971 0.856 0.789 0.704 0.565 0.489 0.555 0.235 0.105 0.241 0.440 0.699 0.889 - 10.45 51.08 1972 0.828 0.826 0.791 0.630 0.627 0.658 0.584 0.835 0.584 0.475 0.722 0.853 - 10.45 51.08 1973 0.819 0.885 0.822 0.625 0.522 0.358 0.321 0.319 0.490 0.771 0.903 0.912 - 10.45 51.08 1974 0.885 0.839 0.809 0.491 0.539 0.577 0.679 0.493 0.453 0.663 0.886 0.924 - 10.45 51.08 1975 0.896 0.835 0.779 0.744 0.613 0.524 0.492 0.224 0.418 0.513 0.625 0.676 - 10.45 51.08 1976 0.894 0.863 0.693 0.527 0.380 0.559 0.142 0.208 0.169 0.490 0.612 0.727 - 10.45 51.08 1977 0.725 0.764 0.801 0.684 0.473 0.537 0.669 0.793 0.706 0.686 0.902 0.920 - 10.45 51.08 1978 0.872 0.822 0.735 0.547 0.568 0.334 0.459 0.512 0.591 0.797 0.689 0.767 - 10.45 51.08 1979 0.845 0.871 0.912 0.806 0.579 0.421 0.590 0.439 0.426 0.448 0.780 0.916 - 10.45 51.08 1980 0.882 0.831 0.680 0.644 0.519 0.429 0.527 0.267 0.351 0.600 0.736 0.883 - 10.45 51.08 1981 0.925 0.909 0.842 0.597 0.746 0.632 0.370 0.634 0.493 0.884 0.883 0.943 - 10.45 51.08 1982 0.922 0.873 0.684 0.487 0.480 0.259 0.291 0.281 0.072 0.420 0.510 0.570 - 10.45 51.08 1983 0.614 0.665 0.656 0.849 0.694 0.519 0.239 0.397 0.427 0.428 0.373 0.517 - 10.45 51.08 1984 0.642 0.854 0.762 0.791 0.742 0.695 0.550 0.627 0.718 0.804 0.811 0.915 - 10.45 51.08 1985 0.923 0.885 0.766 0.609 0.392 0.494 0.418 0.440 0.444 0.279 0.313 0.662 - 10.45 51.08 1986 0.902 0.871 0.852 0.873 0.652 0.639 0.323 0.432 0.640 0.688 0.834 0.762 - 10.45 51.08 1987 0.942 0.926 0.946 0.679 0.597 0.841 0.556 0.696 0.657 0.742 0.757 0.914 - 10.45 51.08 1988 0.898 0.867 0.891 0.714 0.378 0.330 0.596 0.343 0.298 0.309 0.433 0.852 - 10.45 51.08 1989 0.884 0.769 0.757 0.576 0.465 0.434 0.286 0.289 0.307 0.521 0.883 0.924 - 10.45 51.08 1990 0.891 0.809 0.776 0.598 0.367 0.569 0.458 0.169 0.500 0.467 0.615 0.826 - 10.45 51.08 1991 0.828 0.775 0.683 0.473 0.450 0.374 0.264 0.573 0.260 0.290 0.403 0.554 - 10.45 51.08 1992 0.810 0.778 0.770 0.691 0.409 0.405 0.602 0.356 0.553 0.531 0.767 0.934 - 10.45 51.08 1993 0.928 0.928 0.791 0.543 0.342 0.689 0.657 0.504 0.573 0.655 0.819 0.901 - 10.45 51.08 1994 0.920 0.879 0.853 0.753 0.603 0.563 0.556 0.492 0.693 0.649 0.750 0.918 - 10.45 51.08 1995 0.910 0.892 0.723 0.629 0.576 0.756 0.575 0.467 0.719 0.751 0.694 0.733 - 10.45 51.08 1996 0.818 0.830 0.740 0.589 0.714 0.533 0.645 0.654 0.706 0.698 0.879 0.915 - 10.45 51.08 1997 0.922 0.898 0.836 0.666 0.502 0.270 0.537 0.507 0.418 0.537 0.712 0.862 - 10.45 51.08 1998 0.881 0.781 0.745 0.571 0.524 0.467 0.503 0.328 0.712 0.891 0.932 0.891 - 10.45 51.08 1999 0.848 0.817 0.770 0.638 0.431 0.616 0.670 0.453 0.360 0.389 0.784 0.916 - 10.45 51.08 2000 0.905 0.912 0.873 0.663 0.408 0.298 0.433 0.440 0.673 0.723 0.679 0.679 - 10.45 51.08 2001 0.676 0.741 0.801 0.779 0.563 0.498 0.660 0.262 0.471 0.575 0.785 0.929 - 10.45 51.08 2002 0.901 0.850 0.864 0.668 0.699 0.653 0.614 0.662 0.565 0.782 0.921 0.926 - 10.45 51.08 2003 0.929 0.902 0.787 0.493 0.451 0.582 0.295 0.070 0.413 0.601 0.678 0.884 - 10.45 51.08 2004 0.894 0.881 0.714 0.558 0.770 0.434 0.548 0.278 0.286 0.391 0.630 0.900 - 10.45 51.08 2005 0.904 0.915 0.859 0.625 0.516 0.278 0.380 0.644 0.595 0.682 0.674 0.778 - 10.45 51.08 2006 0.778 0.733 0.805 0.691 0.523 0.589 0.498 0.599 0.587 0.623 0.705 0.699 - 10.45 51.08 2007 0.796 0.804 0.728 0.532 0.414 0.687 0.654 0.755 0.615 0.785 0.819 0.895 - 10.45 51.08 2008 0.856 0.766 0.750 0.782 0.467 0.358 0.445 0.220 0.345 0.618 0.851 0.916 - 10.45 51.08 2009 0.864 0.815 0.817 0.609 0.677 0.545 0.524 0.356 0.449 0.704 0.913 0.939 - 10.45 51.08 2010 0.948 0.949 0.814 0.548 0.698 0.439 0.436 0.815 0.664 0.847 0.907 0.942 - 10.45 51.08 2011 0.940 0.847 0.703 0.490 0.212 0.206 0.594 0.518 0.587 0.572 0.564 0.682 - 10.45 51.08 2012 0.891 0.862 0.654 0.452 0.412 0.607 0.658 0.460 0.393 0.481 0.608 0.928 diff --git a/rLPJGUESS/inst/extdata/outputsForTests/run_ifdisturb/outDirectory/nflux.out b/rLPJGUESS/inst/extdata/outputsForTests/run_ifdisturb/outDirectory/nflux.out deleted file mode 100644 index db5fb25..0000000 --- a/rLPJGUESS/inst/extdata/outputsForTests/run_ifdisturb/outDirectory/nflux.out +++ /dev/null @@ -1,63 +0,0 @@ - Lon Lat Year dep fix fert flux leach NEE - 10.45 51.08 1951 -11.23 -3.09 -0.00 1.13 0.52 -12.68 - 10.45 51.08 1952 -11.23 -2.67 -0.00 3.76 0.97 -9.17 - 10.45 51.08 1953 -11.23 -2.53 -0.00 1.53 0.29 -11.94 - 10.45 51.08 1954 -11.23 -2.89 -0.00 1.15 0.68 -12.29 - 10.45 51.08 1955 -11.23 -2.56 -0.00 1.08 0.69 -12.02 - 10.45 51.08 1956 -11.23 -3.01 -0.00 1.05 0.72 -12.46 - 10.45 51.08 1957 -11.23 -3.03 -0.00 1.22 0.64 -12.40 - 10.45 51.08 1958 -11.23 -2.89 -0.00 1.21 0.84 -12.08 - 10.45 51.08 1959 -11.23 -2.82 -0.00 4.32 0.14 -9.59 - 10.45 51.08 1960 -14.10 -3.19 -0.00 1.19 0.59 -15.51 - 10.45 51.08 1961 -14.10 -2.89 -0.00 1.84 0.63 -14.53 - 10.45 51.08 1962 -14.10 -3.12 -0.00 2.03 0.38 -14.81 - 10.45 51.08 1963 -14.10 -2.46 -0.00 1.17 0.43 -14.95 - 10.45 51.08 1964 -14.10 -2.09 -0.00 1.64 0.33 -14.23 - 10.45 51.08 1965 -14.10 -2.95 -0.00 1.06 0.61 -15.38 - 10.45 51.08 1966 -14.10 -2.90 -0.00 1.14 0.78 -15.08 - 10.45 51.08 1967 -14.10 -3.04 -0.00 1.26 0.60 -15.29 - 10.45 51.08 1968 -14.10 -2.74 -0.00 1.21 0.49 -15.14 - 10.45 51.08 1969 -14.10 -2.52 -0.00 2.27 0.56 -13.79 - 10.45 51.08 1970 -16.97 -2.39 -0.00 1.14 0.84 -17.38 - 10.45 51.08 1971 -16.97 -2.50 -0.00 3.38 0.27 -15.82 - 10.45 51.08 1972 -16.97 -3.17 -0.00 0.99 0.32 -18.82 - 10.45 51.08 1973 -16.97 -2.61 -0.00 1.69 0.46 -17.42 - 10.45 51.08 1974 -16.97 -2.99 -0.00 1.07 0.72 -18.17 - 10.45 51.08 1975 -16.97 -2.48 -0.00 1.96 0.29 -17.20 - 10.45 51.08 1976 -16.97 -2.43 -0.00 3.68 0.32 -15.40 - 10.45 51.08 1977 -16.97 -2.73 -0.00 0.99 0.66 -18.05 - 10.45 51.08 1978 -16.97 -2.95 -0.00 1.12 0.39 -18.41 - 10.45 51.08 1979 -16.97 -2.40 -0.00 1.19 0.61 -17.57 - 10.45 51.08 1980 -17.99 -2.66 -0.00 1.41 0.49 -18.76 - 10.45 51.08 1981 -17.99 -2.30 -0.00 1.08 0.69 -18.52 - 10.45 51.08 1982 -17.99 -2.21 -0.00 3.65 0.24 -16.32 - 10.45 51.08 1983 -17.99 -2.12 -0.00 1.99 0.26 -17.87 - 10.45 51.08 1984 -17.99 -2.75 -0.00 0.93 0.66 -19.15 - 10.45 51.08 1985 -17.99 -2.23 -0.00 1.29 0.28 -18.66 - 10.45 51.08 1986 -17.99 -2.41 -0.00 1.12 0.61 -18.67 - 10.45 51.08 1987 -17.99 -2.45 -0.00 0.93 0.86 -18.65 - 10.45 51.08 1988 -17.99 -2.58 -0.00 1.73 0.59 -18.25 - 10.45 51.08 1989 -17.99 -2.61 -0.00 2.00 0.38 -18.22 - 10.45 51.08 1990 -19.66 -2.67 -0.00 2.34 0.39 -19.60 - 10.45 51.08 1991 -19.66 -2.72 -0.00 1.92 0.18 -20.27 - 10.45 51.08 1992 -19.66 -2.37 -0.00 1.36 0.49 -20.17 - 10.45 51.08 1993 -19.66 -2.22 -0.00 1.23 0.66 -19.99 - 10.45 51.08 1994 -19.66 -2.46 -0.00 1.15 0.70 -20.26 - 10.45 51.08 1995 -19.66 -2.54 -0.00 1.04 0.67 -20.48 - 10.45 51.08 1996 -19.66 -2.59 -0.00 0.91 0.65 -20.69 - 10.45 51.08 1997 -19.66 -2.64 -0.00 1.45 0.61 -20.24 - 10.45 51.08 1998 -19.66 -2.91 -0.00 1.11 0.74 -20.72 - 10.45 51.08 1999 -19.66 -2.66 -0.00 1.13 0.49 -20.71 - 10.45 51.08 2000 -21.34 -2.64 -0.00 1.28 0.60 -22.10 - 10.45 51.08 2001 -21.34 -2.60 -0.00 1.44 0.75 -21.75 - 10.45 51.08 2002 -21.34 -2.58 -0.00 0.99 0.96 -21.96 - 10.45 51.08 2003 -21.34 -2.21 -0.00 2.57 0.21 -20.77 - 10.45 51.08 2004 -21.34 -2.71 -0.00 1.33 0.32 -22.40 - 10.45 51.08 2005 -21.34 -2.58 -0.00 1.23 0.42 -22.27 - 10.45 51.08 2006 -21.34 -2.33 -0.00 1.12 0.42 -22.13 - 10.45 51.08 2007 -21.34 -2.65 -0.00 1.01 0.76 -22.23 - 10.45 51.08 2008 -21.34 -2.81 -0.00 1.59 0.47 -22.09 - 10.45 51.08 2009 -21.34 -2.37 -0.00 1.08 0.70 -21.93 - 10.45 51.08 2010 -20.03 -2.62 -0.00 1.37 0.64 -20.63 - 10.45 51.08 2011 -20.03 -2.47 -0.00 2.03 0.28 -20.19 - 10.45 51.08 2012 -20.03 -2.62 -0.00 1.11 0.41 -21.13 diff --git a/rLPJGUESS/inst/extdata/outputsForTests/run_ifdisturb/outDirectory/ngases.out b/rLPJGUESS/inst/extdata/outputsForTests/run_ifdisturb/outDirectory/ngases.out deleted file mode 100644 index 42e8d06..0000000 --- a/rLPJGUESS/inst/extdata/outputsForTests/run_ifdisturb/outDirectory/ngases.out +++ /dev/null @@ -1,63 +0,0 @@ - Lon Lat Year NH3 NO NO2 N2O N2 NSoil Total - 10.45 51.08 1951 0.118 0.152 0.038 0.018 0.175 0.624 1.125 - 10.45 51.08 1952 0.710 0.912 0.229 0.105 1.054 0.751 3.762 - 10.45 51.08 1953 0.185 0.238 0.060 0.027 0.275 0.750 1.534 - 10.45 51.08 1954 0.109 0.140 0.035 0.016 0.162 0.685 1.149 - 10.45 51.08 1955 0.108 0.139 0.035 0.016 0.160 0.619 1.077 - 10.45 51.08 1956 0.107 0.137 0.034 0.016 0.158 0.602 1.053 - 10.45 51.08 1957 0.104 0.133 0.033 0.015 0.154 0.776 1.216 - 10.45 51.08 1958 0.102 0.131 0.033 0.015 0.151 0.777 1.208 - 10.45 51.08 1959 0.806 1.035 0.260 0.120 1.195 0.908 4.323 - 10.45 51.08 1960 0.104 0.134 0.034 0.015 0.154 0.751 1.192 - 10.45 51.08 1961 0.240 0.308 0.077 0.036 0.356 0.820 1.837 - 10.45 51.08 1962 0.291 0.373 0.094 0.043 0.431 0.798 2.030 - 10.45 51.08 1963 0.091 0.117 0.029 0.013 0.135 0.787 1.172 - 10.45 51.08 1964 0.166 0.212 0.053 0.025 0.245 0.936 1.637 - 10.45 51.08 1965 0.088 0.113 0.028 0.013 0.130 0.688 1.061 - 10.45 51.08 1966 0.087 0.111 0.028 0.013 0.129 0.770 1.137 - 10.45 51.08 1967 0.085 0.109 0.027 0.013 0.126 0.897 1.256 - 10.45 51.08 1968 0.083 0.107 0.027 0.012 0.124 0.859 1.212 - 10.45 51.08 1969 0.334 0.429 0.107 0.050 0.495 0.858 2.273 - 10.45 51.08 1970 0.081 0.104 0.026 0.012 0.120 0.800 1.143 - 10.45 51.08 1971 0.568 0.729 0.183 0.084 0.842 0.971 3.377 - 10.45 51.08 1972 0.078 0.100 0.025 0.012 0.116 0.662 0.993 - 10.45 51.08 1973 0.163 0.209 0.053 0.024 0.242 1.001 1.692 - 10.45 51.08 1974 0.075 0.097 0.024 0.011 0.112 0.750 1.069 - 10.45 51.08 1975 0.232 0.298 0.075 0.034 0.344 0.978 1.960 - 10.45 51.08 1976 0.642 0.824 0.207 0.095 0.952 0.957 3.677 - 10.45 51.08 1977 0.088 0.113 0.028 0.013 0.131 0.619 0.993 - 10.45 51.08 1978 0.087 0.111 0.028 0.013 0.129 0.750 1.117 - 10.45 51.08 1979 0.085 0.109 0.027 0.013 0.126 0.826 1.186 - 10.45 51.08 1980 0.143 0.184 0.046 0.021 0.212 0.807 1.413 - 10.45 51.08 1981 0.082 0.105 0.026 0.012 0.122 0.737 1.085 - 10.45 51.08 1982 0.608 0.781 0.196 0.090 0.902 1.074 3.651 - 10.45 51.08 1983 0.265 0.340 0.085 0.039 0.393 0.865 1.988 - 10.45 51.08 1984 0.077 0.099 0.025 0.011 0.114 0.603 0.929 - 10.45 51.08 1985 0.124 0.159 0.040 0.018 0.184 0.764 1.289 - 10.45 51.08 1986 0.086 0.110 0.028 0.013 0.127 0.762 1.124 - 10.45 51.08 1987 0.085 0.109 0.027 0.013 0.126 0.572 0.931 - 10.45 51.08 1988 0.203 0.260 0.065 0.030 0.301 0.876 1.735 - 10.45 51.08 1989 0.267 0.343 0.086 0.040 0.397 0.872 2.005 - 10.45 51.08 1990 0.363 0.466 0.117 0.054 0.538 0.802 2.338 - 10.45 51.08 1991 0.250 0.321 0.080 0.037 0.371 0.859 1.917 - 10.45 51.08 1992 0.121 0.156 0.039 0.018 0.180 0.849 1.363 - 10.45 51.08 1993 0.123 0.158 0.040 0.018 0.182 0.708 1.229 - 10.45 51.08 1994 0.070 0.090 0.023 0.010 0.104 0.858 1.155 - 10.45 51.08 1995 0.069 0.089 0.022 0.010 0.103 0.752 1.045 - 10.45 51.08 1996 0.069 0.089 0.022 0.010 0.103 0.620 0.914 - 10.45 51.08 1997 0.134 0.173 0.043 0.020 0.199 0.876 1.445 - 10.45 51.08 1998 0.066 0.084 0.021 0.010 0.097 0.828 1.106 - 10.45 51.08 1999 0.064 0.082 0.021 0.009 0.095 0.855 1.126 - 10.45 51.08 2000 0.086 0.110 0.028 0.013 0.128 0.918 1.283 - 10.45 51.08 2001 0.144 0.185 0.046 0.021 0.214 0.828 1.439 - 10.45 51.08 2002 0.061 0.078 0.020 0.009 0.090 0.736 0.994 - 10.45 51.08 2003 0.367 0.471 0.118 0.054 0.544 1.018 2.571 - 10.45 51.08 2004 0.121 0.155 0.039 0.018 0.179 0.817 1.328 - 10.45 51.08 2005 0.087 0.112 0.028 0.013 0.129 0.859 1.228 - 10.45 51.08 2006 0.056 0.071 0.018 0.008 0.082 0.888 1.124 - 10.45 51.08 2007 0.055 0.071 0.018 0.008 0.082 0.775 1.008 - 10.45 51.08 2008 0.142 0.182 0.046 0.021 0.210 0.988 1.588 - 10.45 51.08 2009 0.054 0.069 0.017 0.008 0.079 0.852 1.079 - 10.45 51.08 2010 0.144 0.185 0.046 0.021 0.214 0.762 1.373 - 10.45 51.08 2011 0.261 0.336 0.084 0.039 0.388 0.920 2.028 - 10.45 51.08 2012 0.050 0.065 0.016 0.007 0.075 0.892 1.105 diff --git a/rLPJGUESS/inst/extdata/outputsForTests/run_ifdisturb/outDirectory/nlitter.out b/rLPJGUESS/inst/extdata/outputsForTests/run_ifdisturb/outDirectory/nlitter.out deleted file mode 100644 index bef26bc..0000000 --- a/rLPJGUESS/inst/extdata/outputsForTests/run_ifdisturb/outDirectory/nlitter.out +++ /dev/null @@ -1,63 +0,0 @@ - Lon Lat Year Abi_alb BES Bet_pen Bet_pub Car_bet Cor_ave Fag_syl Fra_exc Jun_oxy MRS Pic_abi Pic_sit Pin_syl Pin_hal Pop_tre Que_coc Que_ile Que_pub Que_rob Til_cor Ulm_gla C3_gr C4_gr Total - 10.45 51.08 1951 0.00 0.00 0.00 0.00 0.00 0.00 51.62 0.00 0.00 0.00 8.81 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 60.43 - 10.45 51.08 1952 0.00 0.00 0.00 0.00 0.00 0.00 53.35 0.00 0.00 0.00 14.51 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 67.86 - 10.45 51.08 1953 0.00 0.00 0.00 0.00 0.00 0.00 55.22 0.00 0.00 0.00 8.25 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 63.47 - 10.45 51.08 1954 0.00 0.00 0.00 0.00 0.00 0.00 57.15 0.00 0.00 0.00 8.54 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 65.68 - 10.45 51.08 1955 0.00 0.00 0.00 0.00 0.00 0.00 58.66 0.00 0.00 0.00 8.85 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 67.52 - 10.45 51.08 1956 0.00 0.00 0.00 0.00 0.00 0.00 59.36 0.00 0.00 0.00 9.18 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 68.54 - 10.45 51.08 1957 0.00 0.00 0.00 0.00 0.00 0.00 60.09 0.00 0.00 0.00 8.88 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 68.98 - 10.45 51.08 1958 0.00 0.00 0.00 0.00 0.00 0.00 61.14 0.00 0.00 0.00 8.94 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 70.08 - 10.45 51.08 1959 0.00 0.00 0.00 0.00 0.00 0.00 61.75 0.00 0.00 0.00 8.65 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 70.39 - 10.45 51.08 1960 0.00 0.00 0.00 0.00 0.00 0.00 63.23 0.00 0.00 0.00 8.75 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 71.98 - 10.45 51.08 1961 0.00 0.00 0.00 0.00 0.00 0.00 64.26 0.00 0.00 0.00 9.29 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 73.55 - 10.45 51.08 1962 0.00 0.00 0.00 0.00 0.00 0.00 64.49 0.00 0.00 0.00 8.37 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 72.87 - 10.45 51.08 1963 0.00 0.00 0.00 0.00 0.00 0.00 65.78 0.00 0.00 0.00 8.86 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 74.65 - 10.45 51.08 1964 0.00 0.00 0.00 0.00 0.00 0.00 65.94 0.00 0.00 0.00 8.21 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 74.15 - 10.45 51.08 1965 0.00 0.00 0.00 0.00 0.00 0.00 66.01 0.00 0.00 0.00 7.76 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 73.77 - 10.45 51.08 1966 0.00 0.00 0.00 0.00 0.00 0.00 67.46 0.00 0.00 0.00 7.86 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 75.32 - 10.45 51.08 1967 0.00 0.00 0.00 0.00 0.00 0.00 68.05 0.00 0.00 0.00 7.93 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 75.98 - 10.45 51.08 1968 0.00 0.00 0.00 0.00 0.00 0.00 68.31 0.00 0.00 0.00 7.66 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 75.98 - 10.45 51.08 1969 0.00 0.00 0.00 0.00 0.00 0.00 68.50 0.00 0.00 0.00 7.48 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 75.98 - 10.45 51.08 1970 0.00 0.00 0.00 0.00 0.00 0.00 68.54 0.00 0.00 0.00 7.89 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 76.43 - 10.45 51.08 1971 0.00 0.00 0.00 0.00 0.00 0.00 67.77 0.00 0.00 0.00 6.72 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 74.49 - 10.45 51.08 1972 0.00 0.00 0.00 0.00 0.00 0.00 68.11 0.00 0.00 0.00 9.25 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 77.36 - 10.45 51.08 1973 0.00 0.00 0.00 0.00 0.00 0.00 67.80 0.00 0.00 0.00 6.43 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 74.23 - 10.45 51.08 1974 0.00 0.00 0.00 0.00 0.00 0.00 67.37 0.00 0.00 0.00 6.51 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 73.88 - 10.45 51.08 1975 0.00 0.00 0.00 0.00 0.00 0.00 67.49 0.00 0.00 0.00 97.80 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 165.29 - 10.45 51.08 1976 0.00 0.00 0.00 0.00 0.00 0.00 66.64 0.00 0.00 0.00 5.86 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 72.50 - 10.45 51.08 1977 0.00 0.00 0.00 0.00 0.00 0.00 66.72 0.00 0.00 0.00 5.78 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 72.50 - 10.45 51.08 1978 0.00 0.00 0.00 0.00 0.00 0.00 66.57 0.00 0.00 0.00 5.76 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 72.33 - 10.45 51.08 1979 0.00 0.00 0.00 0.00 0.00 0.00 66.47 0.00 0.00 0.00 5.89 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 72.36 - 10.45 51.08 1980 0.00 0.00 0.00 0.00 0.00 0.00 65.94 0.00 0.00 0.00 6.39 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 72.33 - 10.45 51.08 1981 0.00 0.00 0.00 0.00 0.00 0.00 71.33 0.00 0.00 0.00 6.14 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 77.47 - 10.45 51.08 1982 0.00 0.00 0.00 0.00 0.00 0.00 64.49 0.00 0.00 0.00 6.02 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 70.51 - 10.45 51.08 1983 0.00 0.00 0.00 0.00 0.00 0.00 64.32 0.00 0.00 0.00 6.19 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 70.51 - 10.45 51.08 1984 0.00 0.00 0.00 0.00 0.00 0.00 136.75 0.00 0.00 0.00 6.61 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 143.36 - 10.45 51.08 1985 0.00 0.00 0.00 0.00 0.00 0.00 55.56 0.00 0.00 0.00 7.57 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 63.13 - 10.45 51.08 1986 0.00 0.00 0.00 0.00 0.00 0.00 56.71 0.00 0.00 0.00 5.98 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 62.69 - 10.45 51.08 1987 0.00 0.00 0.00 0.00 0.00 0.00 57.21 0.00 0.00 0.00 6.20 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 63.42 - 10.45 51.08 1988 0.00 0.00 0.00 0.00 0.00 0.00 57.76 0.00 0.00 0.00 6.63 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 64.39 - 10.45 51.08 1989 0.00 0.00 0.00 0.00 0.00 0.00 58.65 0.00 0.00 0.00 7.65 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 66.30 - 10.45 51.08 1990 0.00 0.00 0.00 0.00 0.00 0.00 59.96 0.00 0.00 0.00 6.72 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 66.69 - 10.45 51.08 1991 0.00 0.00 0.00 0.00 0.00 0.00 61.63 0.00 0.00 0.00 7.15 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 68.78 - 10.45 51.08 1992 0.00 0.00 0.00 0.00 0.00 0.00 62.70 0.00 0.00 0.00 7.25 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 69.96 - 10.45 51.08 1993 0.00 0.00 0.00 0.00 0.00 0.00 62.52 0.00 0.00 0.00 7.91 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 70.43 - 10.45 51.08 1994 0.00 0.00 0.00 0.00 0.00 0.00 63.22 0.00 0.00 0.00 7.27 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 70.49 - 10.45 51.08 1995 0.00 0.00 0.00 0.00 0.00 0.00 63.34 0.00 0.00 0.00 7.21 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 70.55 - 10.45 51.08 1996 0.00 0.00 0.00 0.00 0.00 0.00 62.97 0.00 0.00 0.00 7.10 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 70.06 - 10.45 51.08 1997 0.00 0.00 0.00 0.00 0.00 0.00 62.59 0.00 0.00 0.00 6.92 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 69.52 - 10.45 51.08 1998 0.00 0.00 0.00 0.00 0.00 0.00 62.91 0.00 0.00 0.00 7.14 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 70.05 - 10.45 51.08 1999 0.00 0.00 0.00 0.00 0.00 0.00 63.45 0.00 0.00 0.00 7.17 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 70.63 - 10.45 51.08 2000 0.00 0.00 0.00 0.00 0.00 0.00 64.17 0.00 0.00 0.00 7.25 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 71.41 - 10.45 51.08 2001 0.00 0.00 0.00 0.00 0.00 0.00 64.40 0.00 0.00 0.00 7.31 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 71.72 - 10.45 51.08 2002 0.00 0.00 0.00 0.00 0.00 0.00 64.68 0.00 0.00 0.00 7.58 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 72.25 - 10.45 51.08 2003 0.00 0.00 0.00 0.00 0.00 0.00 64.25 0.00 0.00 0.00 7.37 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 71.62 - 10.45 51.08 2004 0.00 0.00 0.00 0.00 0.00 0.00 64.18 0.00 0.00 0.00 7.03 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 71.21 - 10.45 51.08 2005 0.00 0.00 0.00 0.00 0.00 0.00 65.20 0.00 0.00 0.00 7.39 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 72.59 - 10.45 51.08 2006 0.00 0.00 0.00 0.00 0.00 0.00 66.13 0.00 0.00 0.00 6.92 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 73.05 - 10.45 51.08 2007 0.00 0.00 0.00 0.00 0.00 0.00 66.34 0.00 0.00 0.00 6.71 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 73.05 - 10.45 51.08 2008 0.00 0.00 0.00 0.00 0.00 0.00 66.68 0.00 0.00 0.00 7.30 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 73.99 - 10.45 51.08 2009 0.00 0.00 0.00 0.00 0.00 0.00 66.96 0.00 0.00 0.00 7.04 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 74.00 - 10.45 51.08 2010 0.00 0.00 0.00 0.00 0.00 0.00 67.15 0.00 0.00 0.00 7.65 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 74.81 - 10.45 51.08 2011 0.00 0.00 0.00 0.00 0.00 0.00 66.88 0.00 0.00 0.00 7.36 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 74.25 - 10.45 51.08 2012 0.00 0.00 0.00 0.00 0.00 0.00 67.93 0.00 0.00 0.00 6.78 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 74.71 diff --git a/rLPJGUESS/inst/extdata/outputsForTests/run_ifdisturb/outDirectory/nmass.out b/rLPJGUESS/inst/extdata/outputsForTests/run_ifdisturb/outDirectory/nmass.out deleted file mode 100644 index ba2c842..0000000 --- a/rLPJGUESS/inst/extdata/outputsForTests/run_ifdisturb/outDirectory/nmass.out +++ /dev/null @@ -1,63 +0,0 @@ - Lon Lat Year Abi_alb BES Bet_pen Bet_pub Car_bet Cor_ave Fag_syl Fra_exc Jun_oxy MRS Pic_abi Pic_sit Pin_syl Pin_hal Pop_tre Que_coc Que_ile Que_pub Que_rob Til_cor Ulm_gla C3_gr C4_gr Total - 10.45 51.08 1951 0.00 0.00 0.00 0.00 0.00 0.00 452.65 0.00 0.00 0.00 130.85 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 583.50 - 10.45 51.08 1952 0.00 0.00 0.00 0.00 0.00 0.00 466.47 0.00 0.00 0.00 132.08 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 598.55 - 10.45 51.08 1953 0.00 0.00 0.00 0.00 0.00 0.00 479.86 0.00 0.00 0.00 126.02 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 605.88 - 10.45 51.08 1954 0.00 0.00 0.00 0.00 0.00 0.00 495.77 0.00 0.00 0.00 127.36 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 623.13 - 10.45 51.08 1955 0.00 0.00 0.00 0.00 0.00 0.00 507.10 0.00 0.00 0.00 128.60 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 635.70 - 10.45 51.08 1956 0.00 0.00 0.00 0.00 0.00 0.00 517.05 0.00 0.00 0.00 128.98 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 646.03 - 10.45 51.08 1957 0.00 0.00 0.00 0.00 0.00 0.00 528.11 0.00 0.00 0.00 129.33 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 657.44 - 10.45 51.08 1958 0.00 0.00 0.00 0.00 0.00 0.00 540.41 0.00 0.00 0.00 129.79 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 670.20 - 10.45 51.08 1959 0.00 0.00 0.00 0.00 0.00 0.00 550.82 0.00 0.00 0.00 129.40 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 680.21 - 10.45 51.08 1960 0.00 0.00 0.00 0.00 0.00 0.00 566.05 0.00 0.00 0.00 129.87 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 695.92 - 10.45 51.08 1961 0.00 0.00 0.00 0.00 0.00 0.00 576.86 0.00 0.00 0.00 130.04 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 706.90 - 10.45 51.08 1962 0.00 0.00 0.00 0.00 0.00 0.00 587.90 0.00 0.00 0.00 129.31 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 717.21 - 10.45 51.08 1963 0.00 0.00 0.00 0.00 0.00 0.00 600.15 0.00 0.00 0.00 129.54 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 729.69 - 10.45 51.08 1964 0.00 0.00 0.00 0.00 0.00 0.00 611.00 0.00 0.00 0.00 128.73 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 739.73 - 10.45 51.08 1965 0.00 0.00 0.00 0.00 0.00 0.00 622.39 0.00 0.00 0.00 128.31 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 750.70 - 10.45 51.08 1966 0.00 0.00 0.00 0.00 0.00 0.00 634.55 0.00 0.00 0.00 128.91 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 763.46 - 10.45 51.08 1967 0.00 0.00 0.00 0.00 0.00 0.00 647.28 0.00 0.00 0.00 128.86 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 776.14 - 10.45 51.08 1968 0.00 0.00 0.00 0.00 0.00 0.00 656.56 0.00 0.00 0.00 128.94 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 785.50 - 10.45 51.08 1969 0.00 0.00 0.00 0.00 0.00 0.00 667.15 0.00 0.00 0.00 128.80 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 795.94 - 10.45 51.08 1970 0.00 0.00 0.00 0.00 0.00 0.00 675.84 0.00 0.00 0.00 128.25 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 804.08 - 10.45 51.08 1971 0.00 0.00 0.00 0.00 0.00 0.00 683.36 0.00 0.00 0.00 126.88 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 810.25 - 10.45 51.08 1972 0.00 0.00 0.00 0.00 0.00 0.00 693.26 0.00 0.00 0.00 127.20 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 820.46 - 10.45 51.08 1973 0.00 0.00 0.00 0.00 0.00 0.00 701.85 0.00 0.00 0.00 124.83 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 826.68 - 10.45 51.08 1974 0.00 0.00 0.00 0.00 0.00 0.00 709.47 0.00 0.00 0.00 125.19 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 834.66 - 10.45 51.08 1975 0.00 0.00 0.00 0.00 0.00 0.00 719.59 0.00 0.00 0.00 125.74 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 845.33 - 10.45 51.08 1976 0.00 0.00 0.00 0.00 0.00 0.00 726.02 0.00 0.00 0.00 34.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 760.02 - 10.45 51.08 1977 0.00 0.00 0.00 0.00 0.00 0.00 734.85 0.00 0.00 0.00 33.93 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 768.78 - 10.45 51.08 1978 0.00 0.00 0.00 0.00 0.00 0.00 743.71 0.00 0.00 0.00 34.12 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 777.83 - 10.45 51.08 1979 0.00 0.00 0.00 0.00 0.00 0.00 752.56 0.00 0.00 0.00 34.63 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 787.20 - 10.45 51.08 1980 0.00 0.00 0.00 0.00 0.00 0.00 759.64 0.00 0.00 0.00 35.16 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 794.80 - 10.45 51.08 1981 0.00 0.00 0.00 0.00 0.00 0.00 766.98 0.00 0.00 0.00 35.51 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 802.49 - 10.45 51.08 1982 0.00 0.00 0.00 0.00 0.00 0.00 770.69 0.00 0.00 0.00 35.42 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 806.11 - 10.45 51.08 1983 0.00 0.00 0.00 0.00 0.00 0.00 778.45 0.00 0.00 0.00 36.04 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 814.48 - 10.45 51.08 1984 0.00 0.00 0.00 0.00 0.00 0.00 789.21 0.00 0.00 0.00 36.04 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 825.24 - 10.45 51.08 1985 0.00 0.00 0.00 0.00 0.00 0.00 713.64 0.00 0.00 0.00 35.76 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 749.40 - 10.45 51.08 1986 0.00 0.00 0.00 0.00 0.00 0.00 726.29 0.00 0.00 0.00 34.81 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 761.10 - 10.45 51.08 1987 0.00 0.00 0.00 0.00 0.00 0.00 736.69 0.00 0.00 0.00 35.49 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 772.18 - 10.45 51.08 1988 0.00 0.00 0.00 0.00 0.00 0.00 747.17 0.00 0.00 0.00 36.20 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 783.36 - 10.45 51.08 1989 0.00 0.00 0.00 0.00 0.00 0.00 759.22 0.00 0.00 0.00 36.96 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 796.18 - 10.45 51.08 1990 0.00 0.00 0.00 0.00 0.00 0.00 773.96 0.00 0.00 0.00 36.81 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 810.77 - 10.45 51.08 1991 0.00 0.00 0.00 0.00 0.00 0.00 790.39 0.00 0.00 0.00 38.24 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 828.64 - 10.45 51.08 1992 0.00 0.00 0.00 0.00 0.00 0.00 802.31 0.00 0.00 0.00 38.66 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 840.97 - 10.45 51.08 1993 0.00 0.00 0.00 0.00 0.00 0.00 809.99 0.00 0.00 0.00 39.40 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 849.39 - 10.45 51.08 1994 0.00 0.00 0.00 0.00 0.00 0.00 822.74 0.00 0.00 0.00 38.98 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 861.73 - 10.45 51.08 1995 0.00 0.00 0.00 0.00 0.00 0.00 831.82 0.00 0.00 0.00 39.05 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 870.87 - 10.45 51.08 1996 0.00 0.00 0.00 0.00 0.00 0.00 839.63 0.00 0.00 0.00 38.98 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 878.61 - 10.45 51.08 1997 0.00 0.00 0.00 0.00 0.00 0.00 847.49 0.00 0.00 0.00 38.76 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 886.26 - 10.45 51.08 1998 0.00 0.00 0.00 0.00 0.00 0.00 858.07 0.00 0.00 0.00 39.56 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 897.64 - 10.45 51.08 1999 0.00 0.00 0.00 0.00 0.00 0.00 869.73 0.00 0.00 0.00 39.90 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 909.63 - 10.45 51.08 2000 0.00 0.00 0.00 0.00 0.00 0.00 882.29 0.00 0.00 0.00 40.36 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 922.65 - 10.45 51.08 2001 0.00 0.00 0.00 0.00 0.00 0.00 892.25 0.00 0.00 0.00 40.77 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 933.02 - 10.45 51.08 2002 0.00 0.00 0.00 0.00 0.00 0.00 902.99 0.00 0.00 0.00 40.77 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 943.77 - 10.45 51.08 2003 0.00 0.00 0.00 0.00 0.00 0.00 910.99 0.00 0.00 0.00 40.33 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 951.32 - 10.45 51.08 2004 0.00 0.00 0.00 0.00 0.00 0.00 918.97 0.00 0.00 0.00 40.28 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 959.25 - 10.45 51.08 2005 0.00 0.00 0.00 0.00 0.00 0.00 934.50 0.00 0.00 0.00 40.66 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 975.16 - 10.45 51.08 2006 0.00 0.00 0.00 0.00 0.00 0.00 948.25 0.00 0.00 0.00 40.41 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 988.66 - 10.45 51.08 2007 0.00 0.00 0.00 0.00 0.00 0.00 958.71 0.00 0.00 0.00 40.04 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 998.75 - 10.45 51.08 2008 0.00 0.00 0.00 0.00 0.00 0.00 970.60 0.00 0.00 0.00 41.43 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1012.03 - 10.45 51.08 2009 0.00 0.00 0.00 0.00 0.00 0.00 981.50 0.00 0.00 0.00 41.39 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1022.89 - 10.45 51.08 2010 0.00 0.00 0.00 0.00 0.00 0.00 992.59 0.00 0.00 0.00 41.69 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1034.29 - 10.45 51.08 2011 0.00 0.00 0.00 0.00 0.00 0.00 1001.76 0.00 0.00 0.00 40.67 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1042.43 - 10.45 51.08 2012 0.00 0.00 0.00 0.00 0.00 0.00 1016.66 0.00 0.00 0.00 40.61 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1057.27 diff --git a/rLPJGUESS/inst/extdata/outputsForTests/run_ifdisturb/outDirectory/npool.out b/rLPJGUESS/inst/extdata/outputsForTests/run_ifdisturb/outDirectory/npool.out deleted file mode 100644 index eb69a51..0000000 --- a/rLPJGUESS/inst/extdata/outputsForTests/run_ifdisturb/outDirectory/npool.out +++ /dev/null @@ -1,63 +0,0 @@ - Lon Lat Year VegN LitterN SoilN Total - 10.45 51.08 1951 0.0584 0.0533 0.9995 1.1111 - 10.45 51.08 1952 0.0599 0.0514 0.9998 1.1110 - 10.45 51.08 1953 0.0606 0.0497 1.0009 1.1112 - 10.45 51.08 1954 0.0623 0.0487 1.0016 1.1126 - 10.45 51.08 1955 0.0636 0.0481 1.0027 1.1143 - 10.45 51.08 1956 0.0646 0.0475 1.0042 1.1163 - 10.45 51.08 1957 0.0657 0.0461 1.0048 1.1167 - 10.45 51.08 1958 0.0670 0.0450 1.0052 1.1172 - 10.45 51.08 1959 0.0680 0.0430 1.0051 1.1160 - 10.45 51.08 1960 0.0696 0.0424 1.0054 1.1174 - 10.45 51.08 1961 0.0707 0.0409 1.0059 1.1175 - 10.45 51.08 1962 0.0717 0.0403 1.0060 1.1181 - 10.45 51.08 1963 0.0730 0.0398 1.0060 1.1188 - 10.45 51.08 1964 0.0740 0.0385 1.0055 1.1180 - 10.45 51.08 1965 0.0751 0.0384 1.0062 1.1197 - 10.45 51.08 1966 0.0763 0.0378 1.0067 1.1208 - 10.45 51.08 1967 0.0776 0.0368 1.0064 1.1208 - 10.45 51.08 1968 0.0785 0.0361 1.0062 1.1209 - 10.45 51.08 1969 0.0796 0.0354 1.0059 1.1210 - 10.45 51.08 1970 0.0804 0.0351 1.0059 1.1214 - 10.45 51.08 1971 0.0810 0.0336 1.0053 1.1199 - 10.45 51.08 1972 0.0820 0.0338 1.0060 1.1219 - 10.45 51.08 1973 0.0827 0.0328 1.0049 1.1204 - 10.45 51.08 1974 0.0835 0.0324 1.0053 1.1212 - 10.45 51.08 1975 0.0845 0.0312 1.0043 1.1200 - 10.45 51.08 1976 0.0760 0.0386 1.0039 1.1184 - 10.45 51.08 1977 0.0769 0.0386 1.0050 1.1205 - 10.45 51.08 1978 0.0778 0.0379 1.0056 1.1213 - 10.45 51.08 1979 0.0787 0.0371 1.0055 1.1213 - 10.45 51.08 1980 0.0795 0.0363 1.0056 1.1213 - 10.45 51.08 1981 0.0802 0.0357 1.0061 1.1221 - 10.45 51.08 1982 0.0806 0.0341 1.0047 1.1193 - 10.45 51.08 1983 0.0814 0.0330 1.0043 1.1187 - 10.45 51.08 1984 0.0825 0.0333 1.0052 1.1210 - 10.45 51.08 1985 0.0749 0.0388 1.0065 1.1202 - 10.45 51.08 1986 0.0761 0.0378 1.0063 1.1202 - 10.45 51.08 1987 0.0772 0.0375 1.0072 1.1219 - 10.45 51.08 1988 0.0783 0.0355 1.0069 1.1207 - 10.45 51.08 1989 0.0796 0.0340 1.0062 1.1198 - 10.45 51.08 1990 0.0811 0.0329 1.0060 1.1200 - 10.45 51.08 1991 0.0829 0.0318 1.0052 1.1199 - 10.45 51.08 1992 0.0841 0.0310 1.0047 1.1198 - 10.45 51.08 1993 0.0849 0.0307 1.0050 1.1206 - 10.45 51.08 1994 0.0862 0.0299 1.0045 1.1205 - 10.45 51.08 1995 0.0871 0.0295 1.0046 1.1212 - 10.45 51.08 1996 0.0879 0.0298 1.0053 1.1230 - 10.45 51.08 1997 0.0886 0.0286 1.0048 1.1220 - 10.45 51.08 1998 0.0898 0.0279 1.0043 1.1220 - 10.45 51.08 1999 0.0910 0.0271 1.0038 1.1218 - 10.45 51.08 2000 0.0923 0.0262 1.0027 1.1212 - 10.45 51.08 2001 0.0933 0.0257 1.0022 1.1212 - 10.45 51.08 2002 0.0944 0.0256 1.0022 1.1222 - 10.45 51.08 2003 0.0951 0.0243 1.0006 1.1201 - 10.45 51.08 2004 0.0959 0.0239 1.0002 1.1200 - 10.45 51.08 2005 0.0975 0.0234 0.9993 1.1202 - 10.45 51.08 2006 0.0989 0.0229 0.9983 1.1200 - 10.45 51.08 2007 0.0999 0.0227 0.9982 1.1208 - 10.45 51.08 2008 0.1012 0.0218 0.9967 1.1197 - 10.45 51.08 2009 0.1023 0.0215 0.9960 1.1198 - 10.45 51.08 2010 0.1034 0.0217 0.9959 1.1210 - 10.45 51.08 2011 0.1042 0.0208 0.9949 1.1200 - 10.45 51.08 2012 0.1057 0.0204 0.9940 1.1201 diff --git a/rLPJGUESS/inst/extdata/outputsForTests/run_ifdisturb/outDirectory/nsources.out b/rLPJGUESS/inst/extdata/outputsForTests/run_ifdisturb/outDirectory/nsources.out deleted file mode 100644 index 7c77a85..0000000 --- a/rLPJGUESS/inst/extdata/outputsForTests/run_ifdisturb/outDirectory/nsources.out +++ /dev/null @@ -1,63 +0,0 @@ - Lon Lat Year dep fix fert input min imm netmin Total - 10.45 51.08 1951 11.23 3.09 0.00 14.32 127.81 68.89 58.92 73.24 - 10.45 51.08 1952 11.23 2.67 0.00 13.90 133.92 60.91 73.01 86.91 - 10.45 51.08 1953 11.23 2.53 0.00 13.76 149.90 77.03 72.87 86.63 - 10.45 51.08 1954 11.23 2.89 0.00 14.12 122.56 56.12 66.44 80.56 - 10.45 51.08 1955 11.23 2.56 0.00 13.79 111.71 51.42 60.30 74.09 - 10.45 51.08 1956 11.23 3.01 0.00 14.24 109.29 51.29 57.99 72.23 - 10.45 51.08 1957 11.23 3.03 0.00 14.26 134.87 59.03 75.84 90.10 - 10.45 51.08 1958 11.23 2.89 0.00 14.12 130.59 55.05 75.53 89.66 - 10.45 51.08 1959 11.23 2.82 0.00 14.05 155.31 66.36 88.94 103.00 - 10.45 51.08 1960 14.10 3.19 0.00 17.29 125.07 52.18 72.89 90.18 - 10.45 51.08 1961 14.10 2.89 0.00 16.99 145.28 65.20 80.08 97.07 - 10.45 51.08 1962 14.10 3.12 0.00 17.22 128.84 51.11 77.73 94.94 - 10.45 51.08 1963 14.10 2.46 0.00 16.56 123.13 45.63 77.51 94.06 - 10.45 51.08 1964 14.10 2.09 0.00 16.19 142.84 50.44 92.40 108.59 - 10.45 51.08 1965 14.10 2.95 0.00 17.05 112.77 45.49 67.28 84.33 - 10.45 51.08 1966 14.10 2.90 0.00 17.00 124.25 49.07 75.18 92.17 - 10.45 51.08 1967 14.10 3.04 0.00 17.14 140.29 52.62 87.67 104.81 - 10.45 51.08 1968 14.10 2.74 0.00 16.84 133.19 48.47 84.71 101.56 - 10.45 51.08 1969 14.10 2.52 0.00 16.62 127.35 42.75 84.60 101.22 - 10.45 51.08 1970 16.97 2.39 0.00 19.36 120.47 41.58 78.89 98.24 - 10.45 51.08 1971 16.97 2.50 0.00 19.46 149.05 53.83 95.22 114.69 - 10.45 51.08 1972 16.97 3.17 0.00 20.13 108.18 43.38 64.79 84.93 - 10.45 51.08 1973 16.97 2.61 0.00 19.58 146.42 48.51 97.91 117.49 - 10.45 51.08 1974 16.97 2.99 0.00 19.96 123.44 50.14 73.30 93.26 - 10.45 51.08 1975 16.97 2.48 0.00 19.45 149.50 53.57 95.94 115.38 - 10.45 51.08 1976 16.97 2.43 0.00 19.40 153.37 59.57 93.80 113.20 - 10.45 51.08 1977 16.97 2.73 0.00 19.70 111.03 51.04 59.98 79.68 - 10.45 51.08 1978 16.97 2.95 0.00 19.92 125.36 52.28 73.08 93.00 - 10.45 51.08 1979 16.97 2.40 0.00 19.37 129.75 48.37 81.39 100.75 - 10.45 51.08 1980 17.99 2.66 0.00 20.66 131.14 52.20 78.94 99.59 - 10.45 51.08 1981 17.99 2.30 0.00 20.29 123.62 50.79 72.84 93.13 - 10.45 51.08 1982 17.99 2.21 0.00 20.20 171.79 66.18 105.61 125.82 - 10.45 51.08 1983 17.99 2.12 0.00 20.12 145.37 61.23 84.14 104.26 - 10.45 51.08 1984 17.99 2.75 0.00 20.74 104.24 46.09 58.15 78.90 - 10.45 51.08 1985 17.99 2.23 0.00 20.22 140.98 66.12 74.86 95.08 - 10.45 51.08 1986 17.99 2.41 0.00 20.40 128.85 54.07 74.79 95.19 - 10.45 51.08 1987 17.99 2.45 0.00 20.45 103.33 47.05 56.28 76.73 - 10.45 51.08 1988 17.99 2.58 0.00 20.57 153.71 68.05 85.66 106.23 - 10.45 51.08 1989 17.99 2.61 0.00 20.61 153.26 68.16 85.09 105.70 - 10.45 51.08 1990 19.66 2.67 0.00 22.33 143.22 65.02 78.21 100.53 - 10.45 51.08 1991 19.66 2.72 0.00 22.37 146.23 61.88 84.35 106.72 - 10.45 51.08 1992 19.66 2.37 0.00 22.02 140.42 58.44 81.98 104.00 - 10.45 51.08 1993 19.66 2.22 0.00 21.87 118.79 49.71 69.08 90.96 - 10.45 51.08 1994 19.66 2.46 0.00 22.12 138.80 55.25 83.55 105.66 - 10.45 51.08 1995 19.66 2.54 0.00 22.19 125.41 52.71 72.70 94.89 - 10.45 51.08 1996 19.66 2.59 0.00 22.25 102.00 41.00 61.00 83.25 - 10.45 51.08 1997 19.66 2.64 0.00 22.30 142.82 56.79 86.03 108.33 - 10.45 51.08 1998 19.66 2.91 0.00 22.56 134.93 53.53 81.40 103.96 - 10.45 51.08 1999 19.66 2.66 0.00 22.32 142.40 58.74 83.67 105.99 - 10.45 51.08 2000 21.34 2.64 0.00 23.98 146.17 56.48 89.69 113.67 - 10.45 51.08 2001 21.34 2.60 0.00 23.94 133.78 53.07 80.71 104.65 - 10.45 51.08 2002 21.34 2.58 0.00 23.92 121.58 49.51 72.07 95.99 - 10.45 51.08 2003 21.34 2.21 0.00 23.56 156.70 56.69 100.02 123.57 - 10.45 51.08 2004 21.34 2.71 0.00 24.05 136.21 56.23 79.98 104.03 - 10.45 51.08 2005 21.34 2.58 0.00 23.93 133.94 49.31 84.63 108.55 - 10.45 51.08 2006 21.34 2.33 0.00 23.68 136.75 48.97 87.78 111.45 - 10.45 51.08 2007 21.34 2.65 0.00 23.99 127.16 52.44 74.73 98.72 - 10.45 51.08 2008 21.34 2.81 0.00 24.15 149.97 53.18 96.80 120.95 - 10.45 51.08 2009 21.34 2.37 0.00 23.71 132.97 49.44 83.52 107.23 - 10.45 51.08 2010 20.03 2.62 0.00 22.64 115.41 40.10 75.31 97.95 - 10.45 51.08 2011 20.03 2.47 0.00 22.50 144.02 53.54 90.49 112.98 - 10.45 51.08 2012 20.03 2.62 0.00 22.65 139.07 51.60 87.48 110.13 diff --git a/rLPJGUESS/inst/extdata/outputsForTests/run_ifdisturb/outDirectory/nuptake.out b/rLPJGUESS/inst/extdata/outputsForTests/run_ifdisturb/outDirectory/nuptake.out deleted file mode 100644 index 94a795e..0000000 --- a/rLPJGUESS/inst/extdata/outputsForTests/run_ifdisturb/outDirectory/nuptake.out +++ /dev/null @@ -1,63 +0,0 @@ - Lon Lat Year Abi_alb BES Bet_pen Bet_pub Car_bet Cor_ave Fag_syl Fra_exc Jun_oxy MRS Pic_abi Pic_sit Pin_syl Pin_hal Pop_tre Que_coc Que_ile Que_pub Que_rob Til_cor Ulm_gla C3_gr C4_gr Total - 10.45 51.08 1951 0.00 0.00 0.00 0.00 0.00 0.00 63.63 0.00 0.00 0.00 9.35 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 72.98 - 10.45 51.08 1952 0.00 0.00 0.00 0.00 0.00 0.00 65.62 0.00 0.00 0.00 9.51 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 75.13 - 10.45 51.08 1953 0.00 0.00 0.00 0.00 0.00 0.00 66.79 0.00 0.00 0.00 8.46 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 75.25 - 10.45 51.08 1954 0.00 0.00 0.00 0.00 0.00 0.00 71.16 0.00 0.00 0.00 9.59 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 80.75 - 10.45 51.08 1955 0.00 0.00 0.00 0.00 0.00 0.00 68.50 0.00 0.00 0.00 9.78 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 78.29 - 10.45 51.08 1956 0.00 0.00 0.00 0.00 0.00 0.00 68.65 0.00 0.00 0.00 9.10 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 77.75 - 10.45 51.08 1957 0.00 0.00 0.00 0.00 0.00 0.00 70.46 0.00 0.00 0.00 9.54 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 79.99 - 10.45 51.08 1958 0.00 0.00 0.00 0.00 0.00 0.00 72.43 0.00 0.00 0.00 9.35 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 81.78 - 10.45 51.08 1959 0.00 0.00 0.00 0.00 0.00 0.00 71.83 0.00 0.00 0.00 8.57 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 80.40 - 10.45 51.08 1960 0.00 0.00 0.00 0.00 0.00 0.00 77.02 0.00 0.00 0.00 9.12 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 86.15 - 10.45 51.08 1961 0.00 0.00 0.00 0.00 0.00 0.00 74.13 0.00 0.00 0.00 8.75 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 82.88 - 10.45 51.08 1962 0.00 0.00 0.00 0.00 0.00 0.00 75.41 0.00 0.00 0.00 8.58 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 83.99 - 10.45 51.08 1963 0.00 0.00 0.00 0.00 0.00 0.00 76.78 0.00 0.00 0.00 8.46 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 85.24 - 10.45 51.08 1964 0.00 0.00 0.00 0.00 0.00 0.00 76.69 0.00 0.00 0.00 8.06 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 84.76 - 10.45 51.08 1965 0.00 0.00 0.00 0.00 0.00 0.00 77.37 0.00 0.00 0.00 7.79 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 85.16 - 10.45 51.08 1966 0.00 0.00 0.00 0.00 0.00 0.00 78.21 0.00 0.00 0.00 8.35 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 86.56 - 10.45 51.08 1967 0.00 0.00 0.00 0.00 0.00 0.00 80.23 0.00 0.00 0.00 7.74 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 87.96 - 10.45 51.08 1968 0.00 0.00 0.00 0.00 0.00 0.00 77.37 0.00 0.00 0.00 8.01 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 85.38 - 10.45 51.08 1969 0.00 0.00 0.00 0.00 0.00 0.00 79.06 0.00 0.00 0.00 7.53 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 86.59 - 10.45 51.08 1970 0.00 0.00 0.00 0.00 0.00 0.00 77.23 0.00 0.00 0.00 6.79 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 84.02 - 10.45 51.08 1971 0.00 0.00 0.00 0.00 0.00 0.00 76.35 0.00 0.00 0.00 6.54 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 82.89 - 10.45 51.08 1972 0.00 0.00 0.00 0.00 0.00 0.00 77.70 0.00 0.00 0.00 7.04 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 84.75 - 10.45 51.08 1973 0.00 0.00 0.00 0.00 0.00 0.00 76.78 0.00 0.00 0.00 6.88 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 83.66 - 10.45 51.08 1974 0.00 0.00 0.00 0.00 0.00 0.00 75.46 0.00 0.00 0.00 6.79 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 82.25 - 10.45 51.08 1975 0.00 0.00 0.00 0.00 0.00 0.00 77.61 0.00 0.00 0.00 6.22 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 83.83 - 10.45 51.08 1976 0.00 0.00 0.00 0.00 0.00 0.00 74.19 0.00 0.00 0.00 6.07 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 80.26 - 10.45 51.08 1977 0.00 0.00 0.00 0.00 0.00 0.00 75.51 0.00 0.00 0.00 5.79 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 81.30 - 10.45 51.08 1978 0.00 0.00 0.00 0.00 0.00 0.00 75.63 0.00 0.00 0.00 5.97 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 81.60 - 10.45 51.08 1979 0.00 0.00 0.00 0.00 0.00 0.00 75.45 0.00 0.00 0.00 6.28 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 81.74 - 10.45 51.08 1980 0.00 0.00 0.00 0.00 0.00 0.00 73.62 0.00 0.00 0.00 6.29 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 79.91 - 10.45 51.08 1981 0.00 0.00 0.00 0.00 0.00 0.00 71.90 0.00 0.00 0.00 6.74 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 78.64 - 10.45 51.08 1982 0.00 0.00 0.00 0.00 0.00 0.00 75.31 0.00 0.00 0.00 6.06 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 81.38 - 10.45 51.08 1983 0.00 0.00 0.00 0.00 0.00 0.00 72.37 0.00 0.00 0.00 6.65 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 79.02 - 10.45 51.08 1984 0.00 0.00 0.00 0.00 0.00 0.00 65.30 0.00 0.00 0.00 6.19 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 71.50 - 10.45 51.08 1985 0.00 0.00 0.00 0.00 0.00 0.00 61.23 0.00 0.00 0.00 6.34 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 67.57 - 10.45 51.08 1986 0.00 0.00 0.00 0.00 0.00 0.00 68.24 0.00 0.00 0.00 6.63 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 74.86 - 10.45 51.08 1987 0.00 0.00 0.00 0.00 0.00 0.00 67.14 0.00 0.00 0.00 6.67 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 73.81 - 10.45 51.08 1988 0.00 0.00 0.00 0.00 0.00 0.00 67.77 0.00 0.00 0.00 6.83 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 74.60 - 10.45 51.08 1989 0.00 0.00 0.00 0.00 0.00 0.00 69.93 0.00 0.00 0.00 7.18 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 77.11 - 10.45 51.08 1990 0.00 0.00 0.00 0.00 0.00 0.00 73.55 0.00 0.00 0.00 7.52 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 81.06 - 10.45 51.08 1991 0.00 0.00 0.00 0.00 0.00 0.00 76.51 0.00 0.00 0.00 8.16 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 84.68 - 10.45 51.08 1992 0.00 0.00 0.00 0.00 0.00 0.00 73.60 0.00 0.00 0.00 7.57 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 81.17 - 10.45 51.08 1993 0.00 0.00 0.00 0.00 0.00 0.00 70.45 0.00 0.00 0.00 7.86 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 78.30 - 10.45 51.08 1994 0.00 0.00 0.00 0.00 0.00 0.00 75.31 0.00 0.00 0.00 7.49 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 82.81 - 10.45 51.08 1995 0.00 0.00 0.00 0.00 0.00 0.00 72.33 0.00 0.00 0.00 7.34 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 79.67 - 10.45 51.08 1996 0.00 0.00 0.00 0.00 0.00 0.00 71.18 0.00 0.00 0.00 7.14 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 78.32 - 10.45 51.08 1997 0.00 0.00 0.00 0.00 0.00 0.00 70.90 0.00 0.00 0.00 6.89 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 77.79 - 10.45 51.08 1998 0.00 0.00 0.00 0.00 0.00 0.00 73.20 0.00 0.00 0.00 7.72 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 80.93 - 10.45 51.08 1999 0.00 0.00 0.00 0.00 0.00 0.00 74.60 0.00 0.00 0.00 7.48 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 82.08 - 10.45 51.08 2000 0.00 0.00 0.00 0.00 0.00 0.00 76.06 0.00 0.00 0.00 7.64 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 83.70 - 10.45 51.08 2001 0.00 0.00 0.00 0.00 0.00 0.00 74.22 0.00 0.00 0.00 7.66 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 81.88 - 10.45 51.08 2002 0.00 0.00 0.00 0.00 0.00 0.00 75.18 0.00 0.00 0.00 7.21 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 82.39 - 10.45 51.08 2003 0.00 0.00 0.00 0.00 0.00 0.00 72.90 0.00 0.00 0.00 7.14 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 80.04 - 10.45 51.08 2004 0.00 0.00 0.00 0.00 0.00 0.00 72.31 0.00 0.00 0.00 7.32 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 79.63 - 10.45 51.08 2005 0.00 0.00 0.00 0.00 0.00 0.00 79.77 0.00 0.00 0.00 7.41 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 87.18 - 10.45 51.08 2006 0.00 0.00 0.00 0.00 0.00 0.00 78.98 0.00 0.00 0.00 7.15 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 86.13 - 10.45 51.08 2007 0.00 0.00 0.00 0.00 0.00 0.00 76.62 0.00 0.00 0.00 6.55 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 83.17 - 10.45 51.08 2008 0.00 0.00 0.00 0.00 0.00 0.00 78.34 0.00 0.00 0.00 8.04 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 86.37 - 10.45 51.08 2009 0.00 0.00 0.00 0.00 0.00 0.00 77.62 0.00 0.00 0.00 7.27 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 84.89 - 10.45 51.08 2010 0.00 0.00 0.00 0.00 0.00 0.00 78.16 0.00 0.00 0.00 7.20 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 85.36 - 10.45 51.08 2011 0.00 0.00 0.00 0.00 0.00 0.00 76.51 0.00 0.00 0.00 6.64 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 83.15 - 10.45 51.08 2012 0.00 0.00 0.00 0.00 0.00 0.00 81.82 0.00 0.00 0.00 7.30 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 89.13 diff --git a/rLPJGUESS/inst/extdata/outputsForTests/run_ifdisturb/outDirectory/runoff.out b/rLPJGUESS/inst/extdata/outputsForTests/run_ifdisturb/outDirectory/runoff.out deleted file mode 100644 index baa8a4e..0000000 --- a/rLPJGUESS/inst/extdata/outputsForTests/run_ifdisturb/outDirectory/runoff.out +++ /dev/null @@ -1,63 +0,0 @@ - Lon Lat Year Surf Drain Base Total - 10.45 51.08 1951 73.5 110.6 6.6 190.6 - 10.45 51.08 1952 141.2 190.8 17.2 349.2 - 10.45 51.08 1953 31.9 55.8 2.9 90.7 - 10.45 51.08 1954 18.4 143.4 0.8 162.6 - 10.45 51.08 1955 49.1 144.0 9.2 202.3 - 10.45 51.08 1956 110.8 164.8 15.2 290.8 - 10.45 51.08 1957 9.1 132.4 0.5 142.0 - 10.45 51.08 1958 94.7 178.2 9.3 282.2 - 10.45 51.08 1959 0.0 32.4 0.0 32.4 - 10.45 51.08 1960 73.4 122.1 3.6 199.1 - 10.45 51.08 1961 74.0 153.7 10.7 238.4 - 10.45 51.08 1962 4.7 81.4 3.0 89.0 - 10.45 51.08 1963 7.6 90.9 3.0 101.5 - 10.45 51.08 1964 27.2 72.3 1.2 100.6 - 10.45 51.08 1965 29.4 125.1 4.5 159.0 - 10.45 51.08 1966 87.1 163.7 8.8 259.6 - 10.45 51.08 1967 0.4 125.6 0.2 126.1 - 10.45 51.08 1968 26.7 104.5 1.7 132.9 - 10.45 51.08 1969 46.5 115.5 11.3 173.4 - 10.45 51.08 1970 37.8 173.9 7.0 218.7 - 10.45 51.08 1971 12.5 55.4 0.2 68.0 - 10.45 51.08 1972 45.7 78.9 9.6 134.1 - 10.45 51.08 1973 10.8 91.2 2.4 104.4 - 10.45 51.08 1974 26.7 153.4 1.9 182.0 - 10.45 51.08 1975 0.0 59.5 0.0 59.5 - 10.45 51.08 1976 8.0 64.3 2.1 74.5 - 10.45 51.08 1977 76.1 141.5 7.8 225.4 - 10.45 51.08 1978 1.9 82.1 0.5 84.4 - 10.45 51.08 1979 57.7 120.1 4.1 181.8 - 10.45 51.08 1980 3.6 96.7 0.4 100.7 - 10.45 51.08 1981 67.5 142.2 7.0 216.7 - 10.45 51.08 1982 12.0 49.3 1.0 62.3 - 10.45 51.08 1983 47.8 60.1 5.1 113.0 - 10.45 51.08 1984 35.3 148.0 14.9 198.2 - 10.45 51.08 1985 3.3 54.2 0.6 58.1 - 10.45 51.08 1986 41.5 126.8 6.8 175.1 - 10.45 51.08 1987 94.5 190.7 13.6 298.7 - 10.45 51.08 1988 30.3 115.6 4.4 150.2 - 10.45 51.08 1989 17.4 77.0 1.5 95.8 - 10.45 51.08 1990 6.1 79.4 2.1 87.5 - 10.45 51.08 1991 11.4 36.6 1.4 49.4 - 10.45 51.08 1992 74.3 96.1 5.4 175.8 - 10.45 51.08 1993 45.2 131.0 4.6 180.8 - 10.45 51.08 1994 55.2 145.6 2.6 203.4 - 10.45 51.08 1995 38.6 142.1 6.1 186.8 - 10.45 51.08 1996 37.1 142.3 3.4 182.8 - 10.45 51.08 1997 27.1 120.1 8.4 155.7 - 10.45 51.08 1998 37.5 149.5 3.5 190.5 - 10.45 51.08 1999 17.6 102.5 3.7 123.7 - 10.45 51.08 2000 11.8 119.9 2.5 134.2 - 10.45 51.08 2001 23.9 153.2 5.3 182.5 - 10.45 51.08 2002 126.5 209.5 7.2 343.3 - 10.45 51.08 2003 7.2 44.5 0.8 52.6 - 10.45 51.08 2004 57.7 72.4 7.1 137.2 - 10.45 51.08 2005 6.9 85.7 2.0 94.7 - 10.45 51.08 2006 18.0 85.1 2.5 105.6 - 10.45 51.08 2007 138.2 154.5 6.5 299.2 - 10.45 51.08 2008 14.1 97.2 1.1 112.5 - 10.45 51.08 2009 43.6 148.9 2.6 195.0 - 10.45 51.08 2010 113.5 141.4 13.3 268.2 - 10.45 51.08 2011 63.2 55.9 0.9 120.0 - 10.45 51.08 2012 21.2 97.3 1.0 119.6 diff --git a/rLPJGUESS/inst/extdata/outputsForTests/run_ifdisturb/outDirectory/speciesheight.out b/rLPJGUESS/inst/extdata/outputsForTests/run_ifdisturb/outDirectory/speciesheight.out deleted file mode 100644 index 674addc..0000000 --- a/rLPJGUESS/inst/extdata/outputsForTests/run_ifdisturb/outDirectory/speciesheight.out +++ /dev/null @@ -1,63 +0,0 @@ - Lon Lat Year Abi_alb BES Bet_pen Bet_pub Car_bet Cor_ave Fag_syl Fra_exc Jun_oxy MRS Pic_abi Pic_sit Pin_syl Pin_hal Pop_tre Que_coc Que_ile Que_pub Que_rob Til_cor Ulm_gla C3_gr C4_gr - 10.45 51.08 1951 0.00 0.00 0.00 0.00 0.00 0.00 14.93 0.00 0.00 0.00 7.57 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 - 10.45 51.08 1952 0.00 0.00 0.00 0.00 0.00 0.00 14.35 0.00 0.00 0.00 7.46 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 - 10.45 51.08 1953 0.00 0.00 0.00 0.00 0.00 0.00 13.30 0.00 0.00 0.00 7.52 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 - 10.45 51.08 1954 0.00 0.00 0.00 0.00 0.00 0.00 13.42 0.00 0.00 0.00 7.57 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 - 10.45 51.08 1955 0.00 0.00 0.00 0.00 0.00 0.00 13.54 0.00 0.00 0.00 7.60 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 - 10.45 51.08 1956 0.00 0.00 0.00 0.00 0.00 0.00 13.66 0.00 0.00 0.00 7.70 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 - 10.45 51.08 1957 0.00 0.00 0.00 0.00 0.00 0.00 13.79 0.00 0.00 0.00 7.73 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 - 10.45 51.08 1958 0.00 0.00 0.00 0.00 0.00 0.00 13.89 0.00 0.00 0.00 7.74 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 - 10.45 51.08 1959 0.00 0.00 0.00 0.00 0.00 0.00 14.03 0.00 0.00 0.00 7.77 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 - 10.45 51.08 1960 0.00 0.00 0.00 0.00 0.00 0.00 14.13 0.00 0.00 0.00 7.80 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 - 10.45 51.08 1961 0.00 0.00 0.00 0.00 0.00 0.00 14.24 0.00 0.00 0.00 7.80 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 - 10.45 51.08 1962 0.00 0.00 0.00 0.00 0.00 0.00 14.35 0.00 0.00 0.00 7.82 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 - 10.45 51.08 1963 0.00 0.00 0.00 0.00 0.00 0.00 15.04 0.00 0.00 0.00 7.82 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 - 10.45 51.08 1964 0.00 0.00 0.00 0.00 0.00 0.00 15.15 0.00 0.00 0.00 7.79 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 - 10.45 51.08 1965 0.00 0.00 0.00 0.00 0.00 0.00 15.24 0.00 0.00 0.00 7.83 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 - 10.45 51.08 1966 0.00 0.00 0.00 0.00 0.00 0.00 15.35 0.00 0.00 0.00 7.84 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 - 10.45 51.08 1967 0.00 0.00 0.00 0.00 0.00 0.00 15.43 0.00 0.00 0.00 7.89 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 - 10.45 51.08 1968 0.00 0.00 0.00 0.00 0.00 0.00 15.52 0.00 0.00 0.00 7.90 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 - 10.45 51.08 1969 0.00 0.00 0.00 0.00 0.00 0.00 15.59 0.00 0.00 0.00 7.90 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 - 10.45 51.08 1970 0.00 0.00 0.00 0.00 0.00 0.00 15.65 0.00 0.00 0.00 7.88 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 - 10.45 51.08 1971 0.00 0.00 0.00 0.00 0.00 0.00 15.73 0.00 0.00 0.00 7.90 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 - 10.45 51.08 1972 0.00 0.00 0.00 0.00 0.00 0.00 15.80 0.00 0.00 0.00 7.65 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 - 10.45 51.08 1973 0.00 0.00 0.00 0.00 0.00 0.00 15.87 0.00 0.00 0.00 7.67 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 - 10.45 51.08 1974 0.00 0.00 0.00 0.00 0.00 0.00 15.95 0.00 0.00 0.00 7.70 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 - 10.45 51.08 1975 0.00 0.00 0.00 0.00 0.00 0.00 16.01 0.00 0.00 0.00 7.33 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 - 10.45 51.08 1976 0.00 0.00 0.00 0.00 0.00 0.00 16.07 0.00 0.00 0.00 7.35 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 - 10.45 51.08 1977 0.00 0.00 0.00 0.00 0.00 0.00 16.15 0.00 0.00 0.00 7.37 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 - 10.45 51.08 1978 0.00 0.00 0.00 0.00 0.00 0.00 16.22 0.00 0.00 0.00 7.40 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 - 10.45 51.08 1979 0.00 0.00 0.00 0.00 0.00 0.00 16.29 0.00 0.00 0.00 7.32 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 - 10.45 51.08 1980 0.00 0.00 0.00 0.00 0.00 0.00 16.36 0.00 0.00 0.00 7.40 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 - 10.45 51.08 1981 0.00 0.00 0.00 0.00 0.00 0.00 16.66 0.00 0.00 0.00 7.41 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 - 10.45 51.08 1982 0.00 0.00 0.00 0.00 0.00 0.00 16.73 0.00 0.00 0.00 7.45 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 - 10.45 51.08 1983 0.00 0.00 0.00 0.00 0.00 0.00 16.80 0.00 0.00 0.00 7.47 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 - 10.45 51.08 1984 0.00 0.00 0.00 0.00 0.00 0.00 16.22 0.00 0.00 0.00 7.30 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 - 10.45 51.08 1985 0.00 0.00 0.00 0.00 0.00 0.00 16.34 0.00 0.00 0.00 7.27 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 - 10.45 51.08 1986 0.00 0.00 0.00 0.00 0.00 0.00 16.43 0.00 0.00 0.00 7.31 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 - 10.45 51.08 1987 0.00 0.00 0.00 0.00 0.00 0.00 16.54 0.00 0.00 0.00 7.29 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 - 10.45 51.08 1988 0.00 0.00 0.00 0.00 0.00 0.00 16.66 0.00 0.00 0.00 7.34 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 - 10.45 51.08 1989 0.00 0.00 0.00 0.00 0.00 0.00 16.78 0.00 0.00 0.00 7.23 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 - 10.45 51.08 1990 0.00 0.00 0.00 0.00 0.00 0.00 16.93 0.00 0.00 0.00 7.18 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 - 10.45 51.08 1991 0.00 0.00 0.00 0.00 0.00 0.00 17.03 0.00 0.00 0.00 7.22 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 - 10.45 51.08 1992 0.00 0.00 0.00 0.00 0.00 0.00 17.10 0.00 0.00 0.00 7.26 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 - 10.45 51.08 1993 0.00 0.00 0.00 0.00 0.00 0.00 17.21 0.00 0.00 0.00 7.26 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 - 10.45 51.08 1994 0.00 0.00 0.00 0.00 0.00 0.00 17.28 0.00 0.00 0.00 7.23 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 - 10.45 51.08 1995 0.00 0.00 0.00 0.00 0.00 0.00 17.34 0.00 0.00 0.00 7.25 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 - 10.45 51.08 1996 0.00 0.00 0.00 0.00 0.00 0.00 17.41 0.00 0.00 0.00 7.21 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 - 10.45 51.08 1997 0.00 0.00 0.00 0.00 0.00 0.00 17.50 0.00 0.00 0.00 7.26 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 - 10.45 51.08 1998 0.00 0.00 0.00 0.00 0.00 0.00 17.61 0.00 0.00 0.00 7.23 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 - 10.45 51.08 1999 0.00 0.00 0.00 0.00 0.00 0.00 16.79 0.00 0.00 0.00 7.27 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 - 10.45 51.08 2000 0.00 0.00 0.00 0.00 0.00 0.00 16.87 0.00 0.00 0.00 7.25 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 - 10.45 51.08 2001 0.00 0.00 0.00 0.00 0.00 0.00 16.96 0.00 0.00 0.00 7.27 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 - 10.45 51.08 2002 0.00 0.00 0.00 0.00 0.00 0.00 17.03 0.00 0.00 0.00 7.28 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 - 10.45 51.08 2003 0.00 0.00 0.00 0.00 0.00 0.00 17.10 0.00 0.00 0.00 7.30 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 - 10.45 51.08 2004 0.00 0.00 0.00 0.00 0.00 0.00 17.22 0.00 0.00 0.00 7.13 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 - 10.45 51.08 2005 0.00 0.00 0.00 0.00 0.00 0.00 17.32 0.00 0.00 0.00 7.10 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 - 10.45 51.08 2006 0.00 0.00 0.00 0.00 0.00 0.00 17.38 0.00 0.00 0.00 7.11 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 - 10.45 51.08 2007 0.00 0.00 0.00 0.00 0.00 0.00 17.47 0.00 0.00 0.00 7.17 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 - 10.45 51.08 2008 0.00 0.00 0.00 0.00 0.00 0.00 17.55 0.00 0.00 0.00 7.25 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 - 10.45 51.08 2009 0.00 0.00 0.00 0.00 0.00 0.00 17.64 0.00 0.00 0.00 7.28 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 - 10.45 51.08 2010 0.00 0.00 0.00 0.00 0.00 0.00 17.69 0.00 0.00 0.00 7.26 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 - 10.45 51.08 2011 0.00 0.00 0.00 0.00 0.00 0.00 17.81 0.00 0.00 0.00 7.22 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 - 10.45 51.08 2012 0.00 0.00 0.00 0.00 0.00 0.00 17.90 0.00 0.00 0.00 7.30 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 diff --git a/rLPJGUESS/inst/extdata/outputsForTests/run_ifdisturb/outDirectory/vmaxnlim.out b/rLPJGUESS/inst/extdata/outputsForTests/run_ifdisturb/outDirectory/vmaxnlim.out deleted file mode 100644 index 5475313..0000000 --- a/rLPJGUESS/inst/extdata/outputsForTests/run_ifdisturb/outDirectory/vmaxnlim.out +++ /dev/null @@ -1,63 +0,0 @@ - Lon Lat YearAbi_alb BESBet_penBet_pubCar_betCor_aveFag_sylFra_excJun_oxy MRSPic_abiPic_sitPin_sylPin_halPop_treQue_cocQue_ileQue_pubQue_robTil_corUlm_gla C3_gr C4_gr Total - 10.45 51.08 1951 0.00 0.00 0.00 0.00 0.00 0.00 1.00 0.00 0.00 0.00 1.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.00 - 10.45 51.08 1952 0.00 0.00 0.00 0.00 0.00 0.00 1.00 0.00 0.00 0.00 1.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.00 - 10.45 51.08 1953 0.00 0.00 0.00 0.00 0.00 0.00 1.00 0.00 0.00 0.00 1.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.00 - 10.45 51.08 1954 0.00 0.00 0.00 0.00 0.00 0.00 1.00 0.00 0.00 0.00 1.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.00 - 10.45 51.08 1955 0.00 0.00 0.00 0.00 0.00 0.00 1.00 0.00 0.00 0.00 1.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.00 - 10.45 51.08 1956 0.00 0.00 0.00 0.00 0.00 0.00 1.00 0.00 0.00 0.00 1.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.00 - 10.45 51.08 1957 0.00 0.00 0.00 0.00 0.00 0.00 1.00 0.00 0.00 0.00 1.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.00 - 10.45 51.08 1958 0.00 0.00 0.00 0.00 0.00 0.00 1.00 0.00 0.00 0.00 1.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.00 - 10.45 51.08 1959 0.00 0.00 0.00 0.00 0.00 0.00 1.00 0.00 0.00 0.00 1.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.00 - 10.45 51.08 1960 0.00 0.00 0.00 0.00 0.00 0.00 1.00 0.00 0.00 0.00 1.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.00 - 10.45 51.08 1961 0.00 0.00 0.00 0.00 0.00 0.00 1.00 0.00 0.00 0.00 1.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.00 - 10.45 51.08 1962 0.00 0.00 0.00 0.00 0.00 0.00 1.00 0.00 0.00 0.00 1.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.00 - 10.45 51.08 1963 0.00 0.00 0.00 0.00 0.00 0.00 1.00 0.00 0.00 0.00 1.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.00 - 10.45 51.08 1964 0.00 0.00 0.00 0.00 0.00 0.00 1.00 0.00 0.00 0.00 1.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.00 - 10.45 51.08 1965 0.00 0.00 0.00 0.00 0.00 0.00 1.00 0.00 0.00 0.00 1.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.00 - 10.45 51.08 1966 0.00 0.00 0.00 0.00 0.00 0.00 1.00 0.00 0.00 0.00 1.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.00 - 10.45 51.08 1967 0.00 0.00 0.00 0.00 0.00 0.00 1.00 0.00 0.00 0.00 1.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.00 - 10.45 51.08 1968 0.00 0.00 0.00 0.00 0.00 0.00 1.00 0.00 0.00 0.00 1.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.00 - 10.45 51.08 1969 0.00 0.00 0.00 0.00 0.00 0.00 1.00 0.00 0.00 0.00 1.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.00 - 10.45 51.08 1970 0.00 0.00 0.00 0.00 0.00 0.00 1.00 0.00 0.00 0.00 1.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.00 - 10.45 51.08 1971 0.00 0.00 0.00 0.00 0.00 0.00 1.00 0.00 0.00 0.00 1.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.00 - 10.45 51.08 1972 0.00 0.00 0.00 0.00 0.00 0.00 1.00 0.00 0.00 0.00 1.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.00 - 10.45 51.08 1973 0.00 0.00 0.00 0.00 0.00 0.00 1.00 0.00 0.00 0.00 1.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.00 - 10.45 51.08 1974 0.00 0.00 0.00 0.00 0.00 0.00 1.00 0.00 0.00 0.00 1.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.00 - 10.45 51.08 1975 0.00 0.00 0.00 0.00 0.00 0.00 1.00 0.00 0.00 0.00 1.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.00 - 10.45 51.08 1976 0.00 0.00 0.00 0.00 0.00 0.00 1.00 0.00 0.00 0.00 1.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.00 - 10.45 51.08 1977 0.00 0.00 0.00 0.00 0.00 0.00 1.00 0.00 0.00 0.00 1.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.00 - 10.45 51.08 1978 0.00 0.00 0.00 0.00 0.00 0.00 1.00 0.00 0.00 0.00 1.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.00 - 10.45 51.08 1979 0.00 0.00 0.00 0.00 0.00 0.00 1.00 0.00 0.00 0.00 1.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.00 - 10.45 51.08 1980 0.00 0.00 0.00 0.00 0.00 0.00 1.00 0.00 0.00 0.00 1.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.00 - 10.45 51.08 1981 0.00 0.00 0.00 0.00 0.00 0.00 1.00 0.00 0.00 0.00 1.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.00 - 10.45 51.08 1982 0.00 0.00 0.00 0.00 0.00 0.00 1.00 0.00 0.00 0.00 1.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.00 - 10.45 51.08 1983 0.00 0.00 0.00 0.00 0.00 0.00 1.00 0.00 0.00 0.00 1.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.00 - 10.45 51.08 1984 0.00 0.00 0.00 0.00 0.00 0.00 1.00 0.00 0.00 0.00 1.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.00 - 10.45 51.08 1985 0.00 0.00 0.00 0.00 0.00 0.00 1.00 0.00 0.00 0.00 1.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.00 - 10.45 51.08 1986 0.00 0.00 0.00 0.00 0.00 0.00 1.00 0.00 0.00 0.00 1.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.00 - 10.45 51.08 1987 0.00 0.00 0.00 0.00 0.00 0.00 1.00 0.00 0.00 0.00 1.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.00 - 10.45 51.08 1988 0.00 0.00 0.00 0.00 0.00 0.00 1.00 0.00 0.00 0.00 1.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.00 - 10.45 51.08 1989 0.00 0.00 0.00 0.00 0.00 0.00 1.00 0.00 0.00 0.00 1.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.00 - 10.45 51.08 1990 0.00 0.00 0.00 0.00 0.00 0.00 1.00 0.00 0.00 0.00 1.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.00 - 10.45 51.08 1991 0.00 0.00 0.00 0.00 0.00 0.00 1.00 0.00 0.00 0.00 1.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.00 - 10.45 51.08 1992 0.00 0.00 0.00 0.00 0.00 0.00 1.00 0.00 0.00 0.00 1.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.00 - 10.45 51.08 1993 0.00 0.00 0.00 0.00 0.00 0.00 1.00 0.00 0.00 0.00 1.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.00 - 10.45 51.08 1994 0.00 0.00 0.00 0.00 0.00 0.00 1.00 0.00 0.00 0.00 1.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.00 - 10.45 51.08 1995 0.00 0.00 0.00 0.00 0.00 0.00 1.00 0.00 0.00 0.00 1.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.00 - 10.45 51.08 1996 0.00 0.00 0.00 0.00 0.00 0.00 1.00 0.00 0.00 0.00 1.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.00 - 10.45 51.08 1997 0.00 0.00 0.00 0.00 0.00 0.00 1.00 0.00 0.00 0.00 1.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.00 - 10.45 51.08 1998 0.00 0.00 0.00 0.00 0.00 0.00 1.00 0.00 0.00 0.00 1.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.00 - 10.45 51.08 1999 0.00 0.00 0.00 0.00 0.00 0.00 1.00 0.00 0.00 0.00 1.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.00 - 10.45 51.08 2000 0.00 0.00 0.00 0.00 0.00 0.00 1.00 0.00 0.00 0.00 1.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.00 - 10.45 51.08 2001 0.00 0.00 0.00 0.00 0.00 0.00 1.00 0.00 0.00 0.00 1.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.00 - 10.45 51.08 2002 0.00 0.00 0.00 0.00 0.00 0.00 1.00 0.00 0.00 0.00 1.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.00 - 10.45 51.08 2003 0.00 0.00 0.00 0.00 0.00 0.00 1.00 0.00 0.00 0.00 1.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.00 - 10.45 51.08 2004 0.00 0.00 0.00 0.00 0.00 0.00 1.00 0.00 0.00 0.00 1.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.00 - 10.45 51.08 2005 0.00 0.00 0.00 0.00 0.00 0.00 1.00 0.00 0.00 0.00 1.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.00 - 10.45 51.08 2006 0.00 0.00 0.00 0.00 0.00 0.00 1.00 0.00 0.00 0.00 1.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.00 - 10.45 51.08 2007 0.00 0.00 0.00 0.00 0.00 0.00 1.00 0.00 0.00 0.00 1.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.00 - 10.45 51.08 2008 0.00 0.00 0.00 0.00 0.00 0.00 1.00 0.00 0.00 0.00 1.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.00 - 10.45 51.08 2009 0.00 0.00 0.00 0.00 0.00 0.00 1.00 0.00 0.00 0.00 1.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.00 - 10.45 51.08 2010 0.00 0.00 0.00 0.00 0.00 0.00 1.00 0.00 0.00 0.00 1.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.00 - 10.45 51.08 2011 0.00 0.00 0.00 0.00 0.00 0.00 1.00 0.00 0.00 0.00 1.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.00 - 10.45 51.08 2012 0.00 0.00 0.00 0.00 0.00 0.00 1.00 0.00 0.00 0.00 1.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.00 diff --git a/rLPJGUESS/inst/extdata/outputsForTests/run_iffire/europe.ins b/rLPJGUESS/inst/extdata/outputsForTests/run_iffire/europe.ins deleted file mode 100644 index 2b0069b..0000000 --- a/rLPJGUESS/inst/extdata/outputsForTests/run_iffire/europe.ins +++ /dev/null @@ -1,1103 +0,0 @@ -!/////////////////////////////////////////////////////////////////////////////////////// -!// LPJ-GUESS INSTRUCTION SCRIPT FOR COHORT/INDIVIDUAL MODE -!// European Species -!// -!// LPJ-GUESS 3.0 -!// -!// Parameter differences with Thomas Hickler's paper: -!// -!// Hickler, T., Vohland, K., Feehan, J., Miller, P., Fronzek, S., Giesecke, T., Kuehn, I., Carter, T., Smith, B. & -!// Sykes, M. Projecting tree species-based climate-driven changes in European potential natural vegetation -!// with a generalized dynamic vegetation model. In press, Global Ecology & Biogeography. -!// -!// are commented with ! THdiff -!/////////////////////////////////////////////////////////////////////////////////////// - - -!/////////////////////////////////////////////////////////////////////////////////////// -! Output files -! - -! outputdirectory is mandatory. Should be "./" for parallel runs. -outputdirectory "/home/ramiro/Github/TestCode/LPJrunTest/runDirectory/outDirectory/" - -! Prefined yearly output -! These files may be outcommented if their output is not required. -file_cmass "cmass.out" -file_anpp "anpp.out" -file_agpp "agpp.out" -file_fpc "fpc.out" -file_aaet "aaet.out" -file_lai "lai.out" -file_cflux "cflux.out" -file_dens "dens.out" -file_runoff "runoff.out" -file_cpool "cpool.out" -file_clitter "clitter.out" -file_firert "firert.out" -file_aiso "aiso.out" -file_amon "amon.out" -file_speciesheights "speciesheight.out" - -file_nmass "nmass.out" -file_cton_leaf "cton_leaf.out" -file_ngases "ngases.out" -file_nsources "nsources.out" -file_npool "npool.out" -file_nlitter "nlitter.out" -file_nuptake "nuptake.out" -file_nflux "nflux.out" -file_vmaxnlim "vmaxnlim.out" - -! Monthly outputs -file_mnpp "mnpp.out" -file_mlai "mlai.out" -file_mrh "mrh.out" -file_mgpp "mgpp.out" -file_mra "mra.out" -file_mnee "mnee.out" -file_maet "maet.out" -file_mpet "mpet.out" -file_mevap "mevap.out" -file_mintercep "mintercep.out" -file_mrunoff "mrunoff.out" -file_mwcont_upper "mwcont_upper.out" -file_mwcont_lower "mwcont_lower.out" -file_miso "miso.out" -file_mmon "mmon.out" - -!/////////////////////////////////////////////////////////////////////////////////////// - - - -!/////////////////////////////////////////////////////////////////////////////////////// -!// RUN PARAMETERS AND OPTIONS -! - -! Settings recognised by Plib -! Run GUESS with -help option for list of keywords and their meanings - -title 'LPJ-GUESS cohort mode - European species' - -vegmode "cohort" ! "cohort", "individual" or "population" -nyear_spinup 500 ! number of years to spin up the simulation for -ifcalcsla 1 ! whether ctonto calculate SLA from leaf longevity - ! (PFT-specific value can be specified in this file instead) -ifcalccton 1 ! whether to calculate leaf C:N min from leaf longevity - ! (PFT-specific value can be specified in this file instead) -iffire 0 ! whether to implement fire (1) or not (0) -npatch 1 ! number of replicate patches to simulate -patcharea 1000 ! patch area (m2) -estinterval 1 ! years between establishment events in cohort mode -ifdisturb 1 ! whether generic patch-destroying disturbances enabled -distinterval 100 ! average return time for generic patch-destroying disturbances - ! Hickler et al. (2011) used 200 -ifbgestab 1 ! whether background establishment enabled -ifsme 1 ! whether spatial mass effect enabled -ifstochestab 1 ! whether establishment stochastic -ifstochmort 1 ! whether mortality stochastic -ifcdebt 1 ! whether to allow vegetation C storage (1) or not (0) -wateruptake "rootdist" ! "wcont", "rootdist", "smart" or "speciesspecific", - ! see documentation for water_uptake() - -!/////////////////////////////////////////////////////////////////////////////// -! PROCESS SETTINGS SPECIFIC TO NITROGEN -!/////////////////////////////////////////////////////////////////////////////// - -ifcentury 1 ! whether to use CENTURY SOM dynamics (mandatory for N cycling) -ifnlim 0 ! whether plant growth limited by available N -freenyears 100 ! number of years to spin up without N limitation (needed to build up a N pool) -nfix_a 0.102 ! first term in N fixation eqn (Conservative 0.102, Central 0.234, Upper 0.367) -nfix_b 0.524 ! second term in N fixation eqn (Conservative 0.524, Central -0.172, Upper -0.754) -nrelocfrac 0.5 ! fraction of N retranslocated prior to leaf and root shedding - - -!/////////////////////////////////////////////////////////////////////////////// -! SERIALIZATION SETTINGS -!/////////////////////////////////////////////////////////////////////////////// -state_year 500 ! year to save/start state file (no setting = after spinup) -restart 0 ! wheter to start from a state file -save_state 0 ! wheter to save a state file -state_path "" ! directory to put state files in - - -ifsmoothgreffmort 1 ! whether to vary mort_greff smoothly with growth efficiency (1) - ! or to use the standard step-function (0) - ! greff_min values below calibrated for the smooth (1) option -ifdroughtlimitedestab 1 ! whether establishment is limited by growing season drought -ifrainonwetdaysonly 1 ! whether to rain on wet days only (1), or to rain a bit every day (0) -ifbvoc 0 ! whether to include BVOC calculations (1) or not (0) - -!!!!!!!!!!!! landcover parameters !!!!!!!!!!!!!! - -run_landcover 0 ! whether to use (and change) landcover fractions (1) or not (0) - -run_urban 0 ! whether to simulate barren land (1) or not (0) -run_crop 1 ! whether to simulate crop vegetation (1) or not (0) -run_forest 0 ! whether to simulate managed forest (1) or not (0) -run_pasture 0 ! whether to simulate pasture (1) or not (0) -run_natural 0 ! whether to simulate natural vegetation (1) or not (0) -run_peatland 1 ! whether to simulate peatland (1) or not (0) - -lcfrac_fixed 0 ! use landcover fractions (%) below (1) or read from input file (0) -lc_fixed_urban 0 ! URBAN -lc_fixed_cropland 50 ! CROPLAND -lc_fixed_pasture 0 ! PASTURE -lc_fixed_forest 0 ! FOREST -lc_fixed_natural 25 ! NATURAL -lc_fixed_peatland 25 ! PEATLAND -equal_landcover_area 0 ! divide gridcell into equal active landcover fractions - -!/////////////////////////////////////////////////////////////////////////////////////// - - -!/////////////////////////////////////////////////////////////////////////////////////// -!// PARAMETERS FOR PFTS -!// Run GUESS with -help option for list of keywords and their meanings - -group "common" ( - - ! Parameters common to all PFTs - - lambda_max 0.8 ! 0.8 - emax 5 ! 5 - reprfrac 0.1 ! 0.1 - wscal_min 0.35 ! 0.35 - drought_tolerance 1e-04 ! 0.0001 - ! default value - ensures that this has little effect even if - ! ifdroughtlimitedestab is turned on - landcover "natural" - turnover_harv_prod 1 ! 1 -) - - -group "tree" ( - - ! Parameters common to all trees - - common - lifeform "tree" - pathway "c3" - rootdist 0.6 0.4 - crownarea_max 40 ! 40 - turnover_root 0.7 ! 0.7 - ltor_max 1 ! 1 - k_allom2 40 ! 40 - k_allom3 0.67 ! 0.67 - k_rp 1.6 ! 1.6 - wooddens 200 ! 200 - cton_root 29 ! 29 - cton_sap 330 ! 330 - nuptoroot 0.0028 ! 0.0028 - km_volume 1.477e-06 ! 0.000001477 - kest_repr 200 ! 200 - kest_bg 0.1 ! 0.1 - kest_pres 1 ! 1 - litterme 0.3 ! 0.3 - harv_eff 0.7 ! 0.7 - res_outtake 0.75 ! 0.75 - harvest_slow_frac 0.33 ! 0.33 - turnover_harv_prod 0.04 ! 0.04 -) - -group "shrub" ( - common - lifeform "tree" - leafphysiognomy "broadleaf" - pathway "c3" - rootdist 0.6 0.4 - crownarea_max 10 ! 10 - turnover_root 0.7 ! 0.7 - ltor_max 1 ! 1 - k_allom1 100 ! 100 - k_allom2 5 ! 5 - k_allom3 0.67 ! 0.67 - k_rp 1.6 ! 1.6 - wooddens 250 ! 250 - cton_root 29 ! 29 - cton_sap 330 ! 330 - nuptoroot 0.0028 ! 0.0028 - km_volume 1.477e-06 ! 0.000001477 - fnstorage 0.3 ! 0.3 - kest_repr 200 ! 200 - kest_bg 0.1 ! 0.1 - kest_pres 1 ! 1 - litterme 0.3 ! 0.3 - longevity 100 ! 100 -) - -group "needle_leaved" ( - leafphysiognomy "needleleaf" - k_allom1 150 ! 150 - k_latosa 4000 ! 4000 - ga 0.14 ! 0.140 -) - -group "broad_leaved" ( - leafphysiognomy "broadleaf" - k_allom1 250 ! 250 - k_latosa 5000 ! 5000 - leaflong 0.5 ! 0.5 - turnover_leaf 1 ! 1 - ga 0.04 ! 0.040 -) - -group "grass" ( - - ! Parameters common to all grasses - - common - lifeform "grass" - leafphysiognomy "broadleaf" - ltor_max 0.5 ! 0.5 - cton_root 29 ! 29 - nuptoroot 0.00551 ! 0.00551 - km_volume 1.876e-06 ! 0.000001876 - fnstorage 0.3 ! 0.3 - respcoeff 1 ! 1.0 - litterme 0.2 ! 0.2 - ga 0.03 ! 0.030 -) - - -! greff_min values below calibrated for the smooth (ifsmoothgreffmort 1) option -! Many THdiff values here -group "shade_tolerant" ( - est_max 0.05 ! 0.05 - parff_min 350000 ! 350000 - alphar 3 ! 3.0 - greff_min 0.04 ! 0.04 - turnover_sap 0.05 ! 0.05 -) - - -! So far only trial values; not in global version -group "intermediate_shade_tolerant" ( - est_max 0.15 ! 0.15 - parff_min 2e+06 ! 2000000 - alphar 7 ! 7.0 - greff_min 0.06 ! 0.06 - turnover_sap 0.075 ! 0.075 -) - - -! From global version; values from orginal European version after "!" -group "shade_intolerant" ( - est_max 0.2 ! 0.2 - parff_min 2500000 ! 2500000 - alphar 10 ! 10.0 - greff_min 0.08 ! 0.08 - turnover_sap 0.1 ! 0.1 -) - - -group "boreal_tree" ( - respcoeff 1 ! 1.0 - pstemp_min -4 ! -4 - pstemp_low 10 ! 10 - pstemp_high 25 ! 25 - pstemp_max 38 ! 38 -) - -group "temperate_tree" ( - respcoeff 1 ! 1.0 - pstemp_min -2 ! -2 - pstemp_low 15 ! 15 - pstemp_high 25 ! 25 - pstemp_max 38 ! 38 -) - - -!/////////////////////////////////////////////////////////////////////////////////////// -! PFTs and species follow -! -! THdiff notes: -! 1. Thomas Hickler didn't give the values used for the tcmax_est and twmin_est parameters -! 2. rootdist is different for (z1 in brackets): Abi_alb (0.8), Bet_pen (0.8), Bet_pub (0.8), Car_bet (0.7), -! Cor_ave (0.7), Fag_syl (0.8), Fra_exc (0.8) - - -pft "Abi_alb" ( - - include 1 ! 1 - tree - shade_tolerant - temperate_tree - needle_leaved - phenology "evergreen" - !sla 9.3 ! 9.3 - gmin 0.3 ! 0.3 - fnstorage 0.05 ! 0.05 - leaflong 3 ! 3 - turnover_leaf 0.33 ! 0.33 - phengdd5ramp 0 ! 0 - tcmin_surv -2 ! -2 - tcmin_est -2 ! -2 - tcmax_est 2 ! 2 - twmin_est 6 ! 6 - gdd5min_est 1600 ! 1600 - k_chilla 0 ! 0 - k_chillb 100 ! 100 - k_chillk 0.05 ! 0.05 - fireresist 0.1 ! 0.1 - intc 0.06 ! 0.06 - longevity 350 ! 350 - drought_tolerance 0.35 ! 0.35 - eps_iso 0.05 ! 0.05 - seas_iso 0 ! 0 - eps_mon 1.8 ! 1.8 - storfrac_mon 0.5 ! 0.5 -) - - -pft "BES" ( - - ! boreal evergreen shrub - - include 1 ! 1 - shrub - boreal_tree - shade_intolerant - rootdist 0.8 0.2 - phenology "evergreen" - crownarea_max 3 ! 3 - k_allom1 20 ! 20 - k_allom2 5 ! 5 - k_latosa 500 ! 500 - !sla 9.3 ! 9.3 - gmin 0.3 ! 0.3 - leaflong 2 ! 2 - turnover_leaf 0.5 ! 0.5 - turnover_sap 0.05 ! 0.05 - phengdd5ramp 0 ! 0 - tcmin_surv -1000 ! -1000 - tcmin_est -1000 ! -1000 - tcmax_est -1 ! -1.0 - twmin_est -1000 ! -1000 - gdd5min_est 200 ! 200 - longevity 50 ! 50 - k_chilla 0 ! 0 - k_chillb 100 ! 100 - k_chillk 0.05 ! 0.05 - fireresist 0.1 ! 0.1 - intc 0.06 ! 0.06 - drought_tolerance 0.25 ! 0.25 - eps_iso 2 ! 2.0 - seas_iso 0 ! 0 - eps_mon 4 ! 4.0 - storfrac_mon 0.5 ! 0.5 - ga 0.04 ! 0.040 -) - - -pft "Bet_pen" ( - - include 1 ! 1 - tree - shade_intolerant - temperate_tree - broad_leaved - phenology "summergreen" - !sla 24.3 ! 24.3 - gmin 0.5 ! 0.5 - fnstorage 0.15 ! 0.15 - phengdd5ramp 200 ! 200 - tcmin_surv -30 ! -30 - tcmin_est -30 ! -30 - tcmax_est 7 ! 7 - twmin_est 5 ! 5 - gdd5min_est 700 ! 700 - k_chilla 0 ! 0 - k_chillb 350 ! 350 - k_chillk 0.05 ! 0.05 - fireresist 0.1 ! 0.1 - intc 0.02 ! 0.02 - longevity 200 ! 200 - drought_tolerance 0.42 ! 0.42 - eps_iso 0.2 ! 0.2 - seas_iso 1 ! 1 - eps_mon 6 ! 6. - storfrac_mon 0 ! 0. -) - - -pft "Bet_pub" ( - - include 1 ! 1 - tree - shade_intolerant - boreal_tree - broad_leaved - phenology "summergreen" - !sla 24.3 ! 24.3 - gmin 0.5 ! 0.5 - fnstorage 0.15 ! 0.15 - phengdd5ramp 200 ! 200 - tcmin_surv -30 ! -30 - tcmin_est -30 ! -30 - tcmax_est 3 ! 3 - twmin_est 5 ! 5 - gdd5min_est 350 ! 350 - k_chilla 0 ! 0 - k_chillb 350 ! 350 - k_chillk 0.05 ! 0.05 - fireresist 0.1 ! 0.1 - intc 0.02 ! 0.02 - longevity 200 ! 200 - drought_tolerance 0.5 ! 0.5 - eps_iso 0 ! 0. - seas_iso 1 ! 1 - eps_mon 1 ! 1.0 - storfrac_mon 0 ! 0. -) - - -pft "Car_bet" ( - - include 1 ! 1 - tree - intermediate_shade_tolerant - temperate_tree - broad_leaved - phenology "summergreen" - !sla 24.3 ! 24.3 - gmin 0.5 ! 0.5 - fnstorage 0.15 ! 0.15 - phengdd5ramp 200 ! 200 - tcmin_surv -8 ! -8 - tcmin_est -8 ! -8 - tcmax_est 5 ! 5 - twmin_est 5 ! 5 - gdd5min_est 1200 ! 1200 - k_chilla 0 ! 0 - k_chillb 600 ! 600 - k_chillk 0.05 ! 0.05 - fireresist 0.1 ! 0.1 - intc 0.02 ! 0.02 - longevity 350 ! 350 - drought_tolerance 0.33 ! 0.33 - eps_iso 0 ! 0. - seas_iso 1 ! 1 - eps_mon 0.08 ! 0.08 - storfrac_mon 0 ! 0. -) - - -pft "Cor_ave" ( - - include 1 ! 1 - tree - crownarea_max 15 - broad_leaved - intermediate_shade_tolerant - temperate_tree - phenology "summergreen" - crownarea_max 15 ! 15 - k_latosa 4000 ! 4000 - !sla 12 ! 12 - gmin 0.5 ! 0.5 - fnstorage 0.15 ! 0.15 - phengdd5ramp 200 ! 200 - tcmin_surv -11 ! -11 - tcmin_est -11 ! -11 - tcmax_est 7 ! 7 - twmin_est 5 ! 5 - gdd5min_est 800 ! 800 - k_chilla 0 ! 0 - k_chillb 350 ! 350 - k_chillk 0.05 ! 0.05 - fireresist 0.1 ! 0.1 - intc 0.02 ! 0.02 - longevity 100 ! 100 - drought_tolerance 0.3 ! 0.3 - eps_iso 0 ! 0. - seas_iso 1 ! 1 - eps_mon 0 ! 0. - storfrac_mon 0 ! 0. -) - - -pft "Fag_syl" ( - - include 1 ! 1 - tree - shade_tolerant - temperate_tree - broad_leaved - phenology "summergreen" - !sla 24.3 ! 24.3 - gmin 0.5 ! 0.5 - fnstorage 0.15 ! 0.15 - phengdd5ramp 200 ! 200 - tcmin_surv -4 ! -4.0 - tcmin_est -3.5 ! -3.5 - tcmax_est 6 ! 6 - twmin_est 5 ! 5 - gdd5min_est 1500 ! 1500 - k_chilla 0 ! 0 - k_chillb 600 ! 600 - k_chillk 0.05 ! 0.05 - fireresist 0.1 ! 0.1 - intc 0.02 ! 0.02 - longevity 500 ! 500 - drought_tolerance 0.3 ! 0.3 - eps_iso 0 ! 0. - seas_iso 1 ! 1 - eps_mon 10 ! 10. - storfrac_mon 0 ! 0. -) - - -pft "Fra_exc" ( - - include 1 ! 1 - tree - intermediate_shade_tolerant - temperate_tree - broad_leaved - phenology "summergreen" - !sla 24.3 ! 24.3 - gmin 0.5 ! 0.5 - fnstorage 0.15 ! 0.15 - phengdd5ramp 200 ! 200 - tcmin_surv -16 ! -16 - tcmin_est -16 ! -16 - tcmax_est 6 ! 6 - twmin_est 5 ! 5 - gdd5min_est 1100 ! 1100 - k_chilla 0 ! 0 - k_chillb 100 ! 100 - k_chillk 0.05 ! 0.05 - fireresist 0.1 ! 0.1 - intc 0.02 ! 0.02 - longevity 350 ! 350 - drought_tolerance 0.4 ! 0.4 - eps_iso 0 ! 0. - seas_iso 1 ! 1 - eps_mon 0 ! 0. - storfrac_mon 0 ! 0. -) - - -pft "Jun_oxy" ( - - ! Thomas Hickler's values - - include 1 ! 1 - tree ! THdiff: - shrub - shade_intolerant - temperate_tree - needle_leaved - rootdist 0.5 0.5 - phenology "evergreen" - k_latosa 1500 ! 1500 - crownarea_max 10 ! 10 - !sla 10 ! 10 - gmin 0.5 ! 0.5 - fnstorage 0.05 ! 0.05 - leaflong 1.5 ! 1.5 - turnover_leaf 0.6667 ! 0.6667 - phengdd5ramp 0 ! 0 - tcmin_surv 0 ! 0 - tcmin_est 1 ! 1 - tcmax_est 1000 ! 1000 - twmin_est -1000 ! -1000 - gdd5min_est 2200 ! 2200 - k_chilla 0 ! 0 - k_chillb 100 ! 100 - k_chillk 0.05 ! 0.05 - fireresist 0.4 ! 0.4 - intc 0.02 ! 0.02 - longevity 200 ! 200 - drought_tolerance 0.01 ! 0.01 - eps_iso 0 ! 0. - seas_iso 0 ! 0 - eps_mon 2 ! 2.0 - storfrac_mon 0.5 ! 0.5 -) - - -pft "MRS" ( - - ! Thomas Hickler's values - ! Mediterranean raingreen low shrub: - ! Cistus, Rosmarinus, Genista, Lavandula, Erica - - include 1 ! 1 - shrub ! THdiff: - has k_allom1 as 250 - shade_intolerant - temperate_tree - rootdist 0.9 0.1 - phenology "raingreen" - k_latosa 1500 ! 1500 - !sla 10 ! 10 - gmin 0.5 ! 0.5 - leaflong 0.5 ! 0.5 - turnover_leaf 1 ! 1 - phengdd5ramp 0 ! 0 - tcmin_surv 0 ! 0 - tcmin_est 1 ! 1 - tcmax_est 1000 ! 1000 - twmin_est -1000 ! -1000 - gdd5min_est 2200 ! 2200 - k_chilla 0 ! 0 - k_chillb 100 ! 100 - k_chillk 0.05 ! 0.05 - fireresist 0.3 ! 0.3 - intc 0.02 ! 0.02 - longevity 100 ! 100 - drought_tolerance 0.01 ! 0.01 - eps_iso 2 ! 2.0 - seas_iso 0 ! 0 - eps_mon 4 ! 4.0 - storfrac_mon 0.5 ! 0.5 - ga 0.04 ! 0.040 -) - - -pft "Pic_abi" ( - - include 1 ! 1 - tree - shade_tolerant - boreal_tree - needle_leaved - rootdist 0.8 0.2 - phenology "evergreen" - !sla 9.3 ! 9.3 - gmin 0.3 ! 0.3 - fnstorage 0.05 ! 0.05 - leaflong 3 ! 3 - turnover_leaf 0.33 ! 0.33 - phengdd5ramp 0 ! 0 - tcmin_surv -30 ! -30 - tcmin_est -30 ! -30 - tcmax_est -1.5 ! -1.5 - twmin_est 5 ! 5 - gdd5min_est 600 ! 600 - k_chilla 0 ! 0 - k_chillb 100 ! 100 - k_chillk 0.05 ! 0.05 - fireresist 0.1 ! 0.1 - intc 0.06 ! 0.06 - longevity 500 ! 500 - drought_tolerance 0.43 ! 0.43 - eps_iso 0.5 ! 0.5 - seas_iso 0 ! 0 - eps_mon 6 ! 6.0 - storfrac_mon 0.5 ! 0.5 -) - - -pft "Pic_sit" ( - - ! Bjarki's values - - include 1 ! 1 - tree - intermediate_shade_tolerant ! Savill's silviculture book - boreal_tree - needle_leaved - rootdist 0.8 0.2 ! ThomasH - phenology "evergreen" - k_latosa 4500 ! 4500 - !sla 9.3 ! 9.3 - gmin 0.3 ! 0.3 - fnstorage 0.05 ! 0.05 - leaflong 4 ! 4 - turnover_leaf 0.25 ! 0.25 - phengdd5ramp 0 ! 0 - tcmin_surv -18 ! -18 - tcmin_est -17 ! -17 - tcmax_est 5.5 ! 5.5 - twmin_est -1000 ! -1000 - gdd5min_est 450 ! 450 - k_chilla 0 ! 0 - k_chillb 100 ! 100 - k_chillk 0.05 ! 0.05 - fireresist 0.1 ! 0.1 - intc 0.06 ! 0.06 - longevity 700 ! 700 - drought_tolerance 0.5 ! 0.5 - eps_iso 0 ! 0. - seas_iso 0 ! 0 - eps_mon 0 ! 0. - storfrac_mon 0.5 ! 0.5 - - ! wooddens 200 - Should be less dens than P. abies (Savill) - ! turnover_sap 0.065 ! Bjarki 30% + abies! -) - - - -pft "Pin_syl" ( - - include 1 ! 1 - tree - intermediate_shade_tolerant - boreal_tree - needle_leaved - phenology "evergreen" - k_latosa 3000 ! 3000 - !sla 9.3 ! 9.3 - gmin 0.3 ! 0.3 - fnstorage 0.05 ! 0.05 - leaflong 2 ! 2 - turnover_leaf 0.5 ! 0.5 - phengdd5ramp 0 ! 0 - tcmin_surv -30 ! -30 - tcmin_est -30 ! -30 - tcmax_est -1 ! -1.0 - twmin_est 5 ! 5 - gdd5min_est 500 ! 500 - k_chilla 0 ! 0 - k_chillb 100 ! 100 - k_chillk 0.05 ! 0.05 - fireresist 0.2 ! 0.2 - intc 0.06 ! 0.06 - longevity 350 ! 350 - drought_tolerance 0.25 ! 0.25 - eps_iso 0 ! 0. - seas_iso 0 ! 0 - eps_mon 4 ! 4.0 - storfrac_mon 0.5 ! 0.5 -) - - -pft "Pin_hal" ( - - ! Thomas Hickler's values - - include 1 ! 1 - tree - shade_intolerant - temperate_tree - needle_leaved - phenology "evergreen" - k_latosa 3000 ! 3000 - !sla 9.3 ! 9.3 - gmin 0.3 ! 0.3 - fnstorage 0.05 ! 0.05 - leaflong 2 ! 2 - turnover_leaf 0.5 ! 0.5 - phengdd5ramp 0 ! 0 - tcmin_surv 3 ! 3 - tcmin_est 3 ! 3 - tcmax_est 9 ! 9 - twmin_est 21 ! 21 - gdd5min_est 3000 ! 3000 - k_chilla 0 ! 0 - k_chillb 100 ! 100 - k_chillk 0.05 ! 0.05 - fireresist 0.2 ! 0.2 - intc 0.06 ! 0.06 - longevity 350 ! 350 - drought_tolerance 0.05 ! 0.05 - eps_iso 0 ! 0. - seas_iso 0 ! 0 - eps_mon 10 ! 10.0 - storfrac_mon 0.5 ! 0.5 -) - - -pft "Pop_tre" ( - - ! Not included in Thomas Hickler's paper - - include 1 ! 1 - tree - shade_intolerant - temperate_tree - broad_leaved - rootdist 0.7 0.3 - phenology "summergreen" - !sla 24.3 ! 24.3 - gmin 0.5 ! 0.5 - fnstorage 0.15 ! 0.15 - phengdd5ramp 200 ! 200 - tcmin_surv -31 ! -31 - tcmin_est -30 ! -30 - tcmax_est 6 ! 6 - twmin_est -1000 ! -1000 - gdd5min_est 500 ! 500 - k_chilla 0 ! 0 - k_chillb 350 ! 350 - k_chillk 0.05 ! 0.05 - fireresist 0.2 ! 0.2 - intc 0.02 ! 0.02 - longevity 160 ! 160 - drought_tolerance 0.4 ! 0.4 - eps_iso 20 ! 20. - seas_iso 1 ! 1 - eps_mon 4 ! 4.0 - storfrac_mon 0 ! 0. -) - - -pft "Que_coc" ( - - ! Thomas Hickler's values - - include 1 ! 1 - shrub ! THdiff: - has k_allom1 as 250 - intermediate_shade_tolerant - temperate_tree - rootdist 0.5 0.5 - phenology "evergreen" - k_latosa 2500 ! 2500 - !sla 10 ! 10 - gmin 0.5 ! 0.5 - leaflong 1.5 ! 1.5 - turnover_leaf 0.6667 ! 0.6667 - phengdd5ramp 0 ! 0 - tcmin_surv 0 ! 0 - tcmin_est 0 ! 0 - tcmax_est 11 ! 11 - twmin_est 21 ! 21 - gdd5min_est 2200 ! 2200 - k_chilla 0 ! 0 - k_chillb 100 ! 100 - k_chillk 0.05 ! 0.05 - fireresist 0.3 ! 0.3 - intc 0.02 ! 0.02 - longevity 350 ! 350 - drought_tolerance 0.1 ! 0.1 - eps_iso 0.1 ! 0.1 - seas_iso 0 ! 0 - eps_mon 10 ! 10.0 - storfrac_mon 0 ! 0. - ga 0.04 ! 0.040 -) - - -pft "Que_ile" ( - - include 1 ! 1 - tree - intermediate_shade_tolerant - temperate_tree - broad_leaved - rootdist 0.5 0.5 - phenology "evergreen" - k_latosa 3000 ! 3000 - !sla 9.3 ! 9.3 - gmin 0.5 ! 0.5 - fnstorage 0.05 ! 0.05 - leaflong 2 ! 2 - turnover_leaf 0.5 ! 0.5 - phengdd5ramp 0 ! 0 - tcmin_surv 3 ! 3 - tcmin_est 3 ! 3 - tcmax_est 7 ! 7 - twmin_est 5 ! 5 - gdd5min_est 1800 ! 1800 - k_chilla 0 ! 0 - k_chillb 100 ! 100 - k_chillk 0.05 ! 0.05 - fireresist 0.3 ! 0.3 - intc 0.02 ! 0.02 - longevity 350 ! 350 - drought_tolerance 0.1 ! 0.1 - eps_iso 0.05 ! 0.05 - seas_iso 0 ! 0 - eps_mon 16 ! 16.0 - storfrac_mon 0 ! 0. -) - - -pft "Que_pub" ( - - ! Thomas Hickler's values - - include 1 ! 1 - tree - intermediate_shade_tolerant - temperate_tree - broad_leaved - phenology "summergreen" - !sla 24.3 ! 24.3 - gmin 0.5 ! 0.5 - fnstorage 0.15 ! 0.15 - phengdd5ramp 200 ! 200 - tcmin_surv -6 ! -6 - tcmin_est -5 ! -5 - tcmax_est 6 ! 6 - twmin_est -1000 ! -1000 - gdd5min_est 1900 ! 1900 - k_chilla 0 ! 0 - k_chillb 100 ! 100 - k_chillk 0.05 ! 0.05 - fireresist 0.2 ! 0.2 - intc 0.02 ! 0.02 - longevity 500 ! 500 - drought_tolerance 0.2 ! 0.2 - eps_iso 50 ! 50.0 - seas_iso 1 ! 1 - eps_mon 0 ! 0. - storfrac_mon 0 ! 0. -) - - -pft "Que_rob" ( - - include 1 ! 1 - tree - intermediate_shade_tolerant - temperate_tree - broad_leaved - phenology "summergreen" - !sla 24.3 ! 24.3 - gmin 0.5 ! 0.5 - fnstorage 0.15 ! 0.15 - phengdd5ramp 200 ! 200 - tcmin_surv -10 ! -10 - tcmin_est -9 ! -9 - tcmax_est 6 ! 6 - twmin_est 5 ! 5 - gdd5min_est 1100 ! 1100 - k_chilla 0 ! 0 - k_chillb 100 ! 100 - k_chillk 0.05 ! 0.05 - fireresist 0.2 ! 0.2 - intc 0.02 ! 0.02 - longevity 500 ! 500 - drought_tolerance 0.25 ! 0.25 - eps_iso 40 ! 40.0 - seas_iso 1 ! 1 - eps_mon 0 ! 0. - storfrac_mon 0 ! 0. -) - - -pft "Til_cor" ( - - include 1 ! 1 - tree - intermediate_shade_tolerant - temperate_tree - broad_leaved - rootdist 0.8 0.2 - phenology "summergreen" - !sla 24.3 ! 24.3 - gmin 0.5 ! 0.5 - fnstorage 0.15 ! 0.15 - phengdd5ramp 200 ! 200 - tcmin_surv -12 ! -12 - tcmin_est -11 ! -11 - tcmax_est 5 ! 5 - twmin_est 5 ! 5 - gdd5min_est 1100 ! 1100 - k_chilla 0 ! 0 - k_chillb 600 ! 600 - k_chillk 0.05 ! 0.05 - fireresist 0.1 ! 0.1 - intc 0.02 ! 0.02 - longevity 350 ! 350 - drought_tolerance 0.33 ! 0.33 - eps_iso 0 ! 0. - seas_iso 1 ! 1 - eps_mon 0 ! 0. - storfrac_mon 0 ! 0. -) - - -pft "Ulm_gla" ( - - ! Not included in Thomas Hickler's paper - - include 1 ! 1 - tree - intermediate_shade_tolerant - temperate_tree - broad_leaved - phenology "summergreen" - !sla 24.3 ! 24.3 - gmin 0.5 ! 0.5 - fnstorage 0.15 ! 0.15 - phengdd5ramp 200 ! 200 - tcmin_surv -10.5 ! -10.5 - tcmin_est -9.5 ! -9.5 - tcmax_est 6 ! 6 - twmin_est 5 ! 5 - gdd5min_est 850 ! 850 - k_chilla 0 ! 0 - k_chillb 100 ! 100 - k_chillk 0.05 ! 0.05 - fireresist 0.1 ! 0.1 - intc 0.02 ! 0.02 - longevity 350 ! 350 - drought_tolerance 0.4 ! 0.4 - eps_iso 0 ! 0. - seas_iso 1 ! 1 - eps_mon 0 ! 0. - storfrac_mon 0 ! 0. -) - - -pft "C3_gr" ( - - include 1 ! 1 - grass - pathway "c3" - rootdist 0.9 0.1 - phenology "any" - !sla 32.4 ! 32.4 - gmin 0.5 ! 0.5 - leaflong 0.5 ! 0.5 - turnover_leaf 1 ! 1 - turnover_root 0.7 ! 0.7 - phengdd5ramp 100 ! 100 - pstemp_min -5 ! -5 - pstemp_low 10 ! 10 - pstemp_high 30 ! 30 - pstemp_max 45 ! 45 - tcmin_surv -1000 ! -1000 - tcmin_est -1000 ! -1000 - tcmax_est 1000 ! 1000 - twmin_est -1000 ! -1000 - gdd5min_est 0 ! 0 - parff_min 2e+06 ! 2000000 - fireresist 0.5 ! 0.5 - intc 0.01 ! 0.01 - drought_tolerance 0.01 ! 0.01 - eps_iso 0 ! 0. - seas_iso 1 ! 1 - eps_mon 1 ! 1.0 - storfrac_mon 0.5 ! 0.5 -) - - -pft "C4_gr" ( - - include 1 ! 1 - grass - pathway "c4" - rootdist 0.9 0.1 - phenology "any" - gmin 0.5 ! 0.5 - leaflong 0.5 ! 0.5 - turnover_leaf 1 ! 1 - turnover_root 0.7 ! 0.7 - phengdd5ramp 100 ! 100 - pstemp_min 6 ! 6 - pstemp_low 20 ! 20 - pstemp_high 45 ! 45 - pstemp_max 55 ! 55 - tcmin_surv 15.5 ! 15.5 - tcmin_est 15.5 ! 15.5 - tcmax_est 1000 ! 1000 - twmin_est -1000 ! -1000 - gdd5min_est 0 ! 0 - parff_min 1e+06 ! 1000000 - fireresist 0.5 ! 0.5 - intc 0.01 ! 0.01 - drought_tolerance 0.01 ! 0.01 - eps_iso 0 ! 0. - seas_iso 1 ! 1 - eps_mon 1 ! 1.0 - storfrac_mon 0.5 ! 0.5 -) - - -! Reference: Savill's silviculture book: -! The Silviculture of Trees used in British Forestry, Peter S. Savill diff --git a/rLPJGUESS/inst/extdata/outputsForTests/run_iffire/europe_cf.ins b/rLPJGUESS/inst/extdata/outputsForTests/run_iffire/europe_cf.ins deleted file mode 100644 index b2b4f2f..0000000 --- a/rLPJGUESS/inst/extdata/outputsForTests/run_iffire/europe_cf.ins +++ /dev/null @@ -1,50 +0,0 @@ -! -! Instruction file with European species to be used with the -! CF I/O module. -! -! Make sure to start LPJ-GUESS with -input cf when using this -! instruction file. -! - -import "/home/ramiro/Github/TestCode/LPJrunTest/runDirectory/europe.ins" - -coordinates_precision 2 - -!/////////////////////////////////////////////////////////////////////////////////////// -! Forcing Data & gridlists -! - -param "file_gridlist" (str "/home/ramiro/Github/TestCode/LPJrunTest/runDirectory/gridlist.txt") - -param "file_co2" (str "/home/ramiro/Github/TestCode/LPJrunTest/crudata/co2_1765-2500_RCP3.txt") -param "file_cru" (str "/home/ramiro/Github/TestCode/LPJrunTest/crudata/cru_1901_2006.bin") -param "file_cru_misc" (str "/home/ramiro/Github/TestCode/LPJrunTest/crudata/cru_1901_2006misc.bin") - -! N deposition (blank string to use constant pre-industrial level of 2 kgN/ha/year) -! type of N deposition time series: either "historic" (default), "rcp26", "rcp45","rcp60","rcp85" as ndep_timeseries in cfinput.cpp -! will work with "GlobalNitrogenDeposition.bin" no matter the value of ndep_timeseries, it will anyway get the right input file -! won´t work with any other RCP ndep file, no matter the value of ndep_timeseries - -param "file_ndep" (str "/home/ramiro/Github/TestCode/LPJrunTest/crudata/GlobalNitrogenDeposition.bin") - - -param "file_temp" (str "/home/ramiro/Github/TestCode/LPJrunTest/temp.nc") -param "variable_temp" (str "temp") - -param "file_prec" (str "/home/ramiro/Github/TestCode/LPJrunTest/prec.nc") -param "variable_prec" (str "prec") - -param "file_insol" (str "/home/ramiro/Github/TestCode/LPJrunTest/rad.nc") -param "variable_insol" (str "rad") - -! Wet days can only be used with monthly precipitation - param "file_wetdays" (str "") -! param "variable_wetdays" (str "_variable_wetdays_") - -! Min/max temp is required for BVOC, -! if BVOC is switched off these can be set to "" - param "file_min_temp" (str "") -! param "variable_min_temp" (str "_variable_min_temp_") - - param "file_max_temp" (str "") -! param "variable_max_temp" (str "_variable_max_temp_") diff --git a/rLPJGUESS/inst/extdata/outputsForTests/run_iffire/gridlist.txt b/rLPJGUESS/inst/extdata/outputsForTests/run_iffire/gridlist.txt deleted file mode 100644 index c8ed25d..0000000 --- a/rLPJGUESS/inst/extdata/outputsForTests/run_iffire/gridlist.txt +++ /dev/null @@ -1 +0,0 @@ -0 Erfurt diff --git a/rLPJGUESS/inst/extdata/outputsForTests/run_iffire/guess.log b/rLPJGUESS/inst/extdata/outputsForTests/run_iffire/guess.log deleted file mode 100644 index 575587d..0000000 --- a/rLPJGUESS/inst/extdata/outputsForTests/run_iffire/guess.log +++ /dev/null @@ -1,13 +0,0 @@ -[LPJ-GUESS Thu Jun 21 19:05:39 2018] - - - --------------------------------------------------- -LPJ-GUESS cohort mode - European species --------------------------------------------------- - -Commencing simulation for gridcell at (10.453,51.0792) -Description: Erfurt -Using soil code and Nitrogen deposition for (10.0,51.0) - -Finished diff --git a/rLPJGUESS/inst/extdata/outputsForTests/run_iffire/outDirectory/aaet.out b/rLPJGUESS/inst/extdata/outputsForTests/run_iffire/outDirectory/aaet.out deleted file mode 100644 index 0fa8105..0000000 --- a/rLPJGUESS/inst/extdata/outputsForTests/run_iffire/outDirectory/aaet.out +++ /dev/null @@ -1,63 +0,0 @@ - Lon Lat Year Abi_alb BES Bet_pen Bet_pub Car_bet Cor_ave Fag_syl Fra_exc Jun_oxy MRS Pic_abi Pic_sit Pin_syl Pin_hal Pop_tre Que_coc Que_ile Que_pub Que_rob Til_cor Ulm_gla C3_gr C4_gr Total - 10.45 51.08 1951 0.00 0.00 0.00 132.07 6.02 0.00 89.48 14.94 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 8.53 0.92 23.47 0.00 0.00 275.43 - 10.45 51.08 1952 0.00 0.00 0.00 114.70 6.13 0.00 91.29 15.16 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 8.66 0.92 23.82 0.00 0.00 260.68 - 10.45 51.08 1953 0.00 0.00 0.00 127.23 6.94 0.00 104.43 17.15 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 9.80 1.08 26.96 0.00 0.00 293.60 - 10.45 51.08 1954 0.00 0.00 0.00 107.32 6.13 0.00 91.03 15.12 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 8.64 0.97 23.77 0.00 0.00 252.99 - 10.45 51.08 1955 0.00 0.00 0.00 88.48 5.95 0.00 89.84 14.65 0.00 0.00 0.02 0.00 0.00 0.00 0.00 0.00 0.00 0.00 8.37 0.94 23.02 0.00 0.00 231.29 - 10.45 51.08 1956 0.00 0.00 0.00 87.52 5.99 0.00 91.13 12.61 0.00 0.00 0.03 0.00 0.00 0.00 0.00 0.00 0.00 0.00 8.41 0.95 21.02 0.00 0.00 227.66 - 10.45 51.08 1957 0.00 0.00 0.00 103.14 7.20 0.00 110.47 12.59 0.00 0.00 0.03 0.00 0.00 0.00 0.00 0.00 0.00 0.00 10.07 1.16 22.67 0.00 0.00 267.34 - 10.45 51.08 1958 0.00 0.00 0.00 98.00 6.93 0.00 108.18 12.12 0.00 0.00 0.04 0.00 0.00 0.00 0.00 0.00 0.00 0.00 9.70 1.13 21.81 0.00 0.00 257.90 - 10.45 51.08 1959 0.00 0.00 0.00 77.36 8.30 0.00 131.21 14.51 0.00 0.00 0.04 0.00 0.00 0.00 0.00 0.00 0.00 0.00 11.61 1.33 26.11 0.00 0.00 270.48 - 10.45 51.08 1960 0.00 0.00 0.00 65.47 7.40 0.00 116.36 12.92 0.00 0.00 0.04 0.00 0.00 0.00 0.00 0.00 0.00 0.00 10.34 1.24 20.67 0.00 0.00 234.44 - 10.45 51.08 1961 0.00 0.00 0.00 66.24 7.63 0.00 121.96 13.30 0.00 0.00 0.05 0.00 0.00 0.00 0.00 0.00 0.00 0.00 10.64 0.64 21.28 0.00 0.00 241.74 - 10.45 51.08 1962 0.00 0.00 0.00 63.26 7.46 0.00 120.52 12.97 0.00 0.00 0.05 0.00 0.00 0.00 0.00 0.00 0.00 0.00 7.78 0.64 20.75 0.00 0.00 233.43 - 10.45 51.08 1963 0.00 0.00 0.00 66.88 6.01 0.00 128.41 13.91 0.00 0.00 0.05 0.00 0.00 0.00 0.00 0.00 0.00 0.00 8.35 0.69 22.26 0.00 0.00 246.57 - 10.45 51.08 1964 0.00 0.00 0.00 74.47 6.79 0.00 144.16 15.67 0.00 0.00 0.06 0.00 0.00 0.00 0.00 0.00 0.00 0.00 9.40 0.78 21.94 0.00 0.00 273.28 - 10.45 51.08 1965 0.00 0.00 0.00 62.39 5.70 0.00 121.70 13.16 0.00 0.00 0.05 0.00 0.00 0.00 0.00 0.00 0.00 0.00 7.90 0.66 18.43 0.00 0.00 230.00 - 10.45 51.08 1966 0.00 0.00 0.00 34.79 6.36 0.00 136.55 14.65 0.00 0.00 0.06 0.00 0.00 0.00 0.00 0.00 0.00 0.00 8.79 0.74 20.51 0.00 0.00 222.44 - 10.45 51.08 1967 0.00 0.00 0.00 35.52 6.78 0.00 140.43 15.57 0.00 0.00 0.07 0.00 0.00 0.00 0.00 0.00 0.00 0.00 9.34 0.80 21.80 0.00 0.00 230.31 - 10.45 51.08 1968 0.00 0.00 0.00 33.82 4.35 0.00 134.46 14.97 0.00 0.00 0.10 0.00 0.00 0.00 0.00 0.00 0.00 0.00 8.98 0.78 20.96 0.00 0.00 218.42 - 10.45 51.08 1969 0.00 0.00 0.00 33.72 4.40 0.00 134.75 15.13 0.00 0.00 0.13 0.00 0.00 0.00 0.00 0.00 0.00 0.00 9.08 0.78 21.18 0.00 0.00 219.18 - 10.45 51.08 1970 0.00 0.00 0.00 32.47 4.21 0.00 130.30 11.58 0.00 0.00 0.13 0.00 0.00 0.00 0.00 0.00 0.00 0.00 8.68 0.76 20.26 0.00 0.00 208.37 - 10.45 51.08 1971 0.00 0.00 0.00 36.11 4.60 0.00 145.33 12.68 0.00 0.00 0.14 0.00 0.00 0.00 0.00 0.00 0.00 0.00 9.51 0.81 22.20 0.00 0.00 231.39 - 10.45 51.08 1972 0.00 0.00 0.00 31.79 4.00 0.00 128.32 11.06 0.00 0.00 0.13 0.00 0.00 0.00 0.00 0.00 0.00 0.00 8.30 0.72 19.36 0.00 0.00 203.69 - 10.45 51.08 1973 0.00 0.00 0.00 33.90 4.18 0.00 137.14 11.61 0.00 0.00 0.15 0.00 0.00 0.00 0.00 0.00 0.00 0.00 8.71 0.75 20.32 0.00 0.00 216.76 - 10.45 51.08 1974 0.00 0.00 0.00 33.10 4.01 0.00 134.36 11.14 0.00 0.00 0.15 0.00 0.00 0.00 0.00 0.00 0.00 0.00 8.35 0.72 19.49 0.00 0.00 211.32 - 10.45 51.08 1975 0.00 0.00 0.00 34.67 4.17 0.00 140.65 8.74 0.00 0.00 0.17 0.00 0.00 0.00 0.00 0.00 0.00 0.00 8.74 0.74 17.48 0.00 0.00 215.35 - 10.45 51.08 1976 0.00 0.00 0.00 36.70 4.28 0.00 149.63 9.01 0.00 0.00 0.19 0.00 0.00 0.00 0.00 0.00 0.00 0.00 9.01 0.75 18.01 0.00 0.00 227.58 - 10.45 51.08 1977 0.00 0.00 0.00 30.97 3.44 0.00 126.70 4.84 0.00 0.00 0.16 0.00 0.00 0.00 0.00 0.00 0.00 0.00 7.26 0.61 14.52 0.00 0.00 188.49 - 10.45 51.08 1978 0.00 0.00 0.00 31.31 3.42 0.00 128.25 4.82 0.00 0.00 0.16 0.00 0.00 0.00 0.00 0.00 0.00 0.00 7.23 0.60 12.05 0.00 0.00 187.83 - 10.45 51.08 1979 0.00 0.00 0.00 30.97 3.31 0.00 127.26 4.68 0.00 0.00 0.17 0.00 0.00 0.00 0.00 0.00 0.00 0.00 7.01 0.58 11.69 0.00 0.00 185.67 - 10.45 51.08 1980 0.00 0.00 0.00 30.60 3.19 0.00 126.25 4.53 0.00 0.00 0.18 0.00 0.00 0.00 0.00 0.00 0.00 0.00 6.79 0.56 11.32 0.00 0.00 183.41 - 10.45 51.08 1981 0.00 0.00 0.00 16.85 3.41 0.00 139.66 4.83 0.00 0.00 0.21 0.00 0.00 0.00 0.00 0.00 0.00 0.00 7.24 0.60 12.07 0.00 0.00 184.87 - 10.45 51.08 1982 0.00 0.00 0.00 18.57 3.79 0.00 154.12 5.38 0.00 0.00 0.24 0.00 0.00 0.00 0.00 0.00 0.00 0.00 8.07 0.67 13.45 0.00 0.00 204.29 - 10.45 51.08 1983 0.00 0.00 0.00 18.72 3.70 0.00 156.01 2.63 0.00 0.00 0.25 0.00 0.00 0.00 0.00 0.00 0.00 0.00 5.27 0.66 13.17 0.00 0.00 200.42 - 10.45 51.08 1984 0.00 0.00 0.00 14.23 2.75 0.00 118.93 1.96 0.00 0.00 0.20 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.96 0.00 9.81 0.00 0.00 149.85 - 10.45 51.08 1985 0.00 0.00 0.00 17.47 3.28 0.00 146.65 2.34 0.00 0.00 0.25 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.34 0.00 11.70 0.00 0.00 184.03 - 10.45 51.08 1986 0.00 0.00 0.00 16.97 3.15 0.00 142.78 2.25 0.00 0.00 0.25 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.25 0.00 11.23 0.00 0.00 178.87 - 10.45 51.08 1987 0.00 0.00 0.00 15.36 2.73 0.00 129.49 1.96 0.00 0.00 0.23 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.96 0.00 9.82 0.00 0.00 161.57 - 10.45 51.08 1988 0.00 0.00 0.00 17.74 3.07 0.00 149.86 2.20 0.00 0.00 0.27 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.20 0.00 11.02 0.00 0.00 186.37 - 10.45 51.08 1989 0.00 0.00 0.00 19.45 3.32 0.00 165.19 2.38 0.00 0.00 0.31 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.38 0.00 11.92 0.00 0.00 204.96 - 10.45 51.08 1990 0.00 0.00 0.00 19.60 3.29 0.00 167.16 2.35 0.00 0.00 0.32 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.35 0.00 11.74 0.00 0.00 206.80 - 10.45 51.08 1991 0.00 0.00 0.00 18.62 0.00 0.00 158.48 2.24 0.00 0.00 0.32 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.24 0.00 11.20 0.00 0.00 193.11 - 10.45 51.08 1992 0.00 0.00 0.00 18.29 0.00 0.00 156.13 2.12 0.00 0.00 0.32 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.12 0.00 10.60 0.00 0.00 189.58 - 10.45 51.08 1993 0.00 0.00 0.00 18.00 0.00 0.00 154.73 1.98 0.00 0.00 0.32 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.98 0.00 9.89 0.00 0.00 186.88 - 10.45 51.08 1994 0.00 0.00 0.00 18.83 0.00 0.00 162.67 2.00 0.00 0.00 0.33 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.00 0.00 8.00 0.00 0.00 193.83 - 10.45 51.08 1995 0.00 0.00 0.00 17.44 0.00 0.00 151.38 1.75 0.00 0.00 0.30 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.75 0.00 7.02 0.00 0.00 179.65 - 10.45 51.08 1996 0.00 0.00 0.00 14.58 0.00 0.00 127.61 1.37 0.00 0.00 0.25 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.37 0.00 5.48 0.00 0.00 150.67 - 10.45 51.08 1997 0.00 0.00 0.00 17.77 0.00 0.00 156.49 1.59 0.00 0.00 0.29 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.59 0.00 6.36 0.00 0.00 184.10 - 10.45 51.08 1998 0.00 0.00 0.00 0.00 0.00 0.00 150.25 1.45 0.00 0.00 0.29 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.45 0.00 5.81 0.00 0.00 159.25 - 10.45 51.08 1999 0.00 0.00 0.00 0.00 0.00 0.00 162.37 1.51 0.00 0.00 0.31 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.51 0.00 6.04 0.00 0.00 171.72 - 10.45 51.08 2000 0.00 0.00 0.00 0.00 0.00 0.00 157.03 1.42 0.00 0.00 0.30 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.42 0.00 5.67 0.00 0.00 165.83 - 10.45 51.08 2001 0.00 0.00 0.00 0.00 0.00 0.00 154.41 1.33 0.00 0.00 0.30 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.33 0.00 4.00 0.00 0.00 161.37 - 10.45 51.08 2002 0.00 0.00 0.00 0.00 0.00 0.00 147.53 1.21 0.00 0.00 0.28 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.21 0.00 3.63 0.00 0.00 153.86 - 10.45 51.08 2003 0.00 0.00 0.00 0.00 0.00 0.00 173.36 1.37 0.00 0.00 0.33 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.37 0.00 4.12 0.00 0.00 180.55 - 10.45 51.08 2004 0.00 0.00 0.00 0.00 0.00 0.00 164.86 0.00 0.00 0.00 0.31 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.19 0.00 3.58 0.00 0.00 169.94 - 10.45 51.08 2005 0.00 0.00 0.00 0.00 0.00 0.00 167.42 0.00 0.00 0.00 0.32 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.19 0.00 3.58 0.00 0.00 172.51 - 10.45 51.08 2006 0.00 0.00 0.00 0.00 0.00 0.00 171.29 0.00 0.00 0.00 0.32 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.16 0.00 3.47 0.00 0.00 176.24 - 10.45 51.08 2007 0.00 0.00 0.00 0.00 0.00 0.00 162.45 0.00 0.00 0.00 0.30 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.02 0.00 3.06 0.00 0.00 166.84 - 10.45 51.08 2008 0.00 0.00 0.00 0.00 0.00 0.00 162.99 0.00 0.00 0.00 0.31 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.97 0.00 1.93 0.00 0.00 166.20 - 10.45 51.08 2009 0.00 0.00 0.00 0.00 0.00 0.00 155.22 0.00 0.00 0.00 0.30 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.87 0.00 1.75 0.00 0.00 158.14 - 10.45 51.08 2010 0.00 0.00 0.00 0.00 0.00 0.00 153.15 0.00 0.00 0.00 0.29 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.82 0.00 1.64 0.00 0.00 155.90 - 10.45 51.08 2011 0.00 0.00 0.00 0.00 0.00 0.00 170.60 0.00 0.00 0.00 0.31 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.83 0.00 1.66 0.00 0.00 173.40 - 10.45 51.08 2012 0.00 0.00 0.00 0.00 0.00 0.00 160.56 0.00 0.00 0.00 0.30 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.76 0.00 1.52 0.00 0.00 163.13 diff --git a/rLPJGUESS/inst/extdata/outputsForTests/run_iffire/outDirectory/agpp.out b/rLPJGUESS/inst/extdata/outputsForTests/run_iffire/outDirectory/agpp.out deleted file mode 100644 index 7ed7e5d..0000000 --- a/rLPJGUESS/inst/extdata/outputsForTests/run_iffire/outDirectory/agpp.out +++ /dev/null @@ -1,63 +0,0 @@ - Lon Lat Year Abi_alb BES Bet_pen Bet_pub Car_bet Cor_ave Fag_syl Fra_exc Jun_oxy MRS Pic_abi Pic_sit Pin_syl Pin_hal Pop_tre Que_coc Que_ile Que_pub Que_rob Til_cor Ulm_gla C3_gr C4_gr Total - 10.45 51.08 1951 0.000 0.000 0.000 0.667 0.008 0.000 0.264 0.021 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.012 0.001 0.033 0.000 0.000 1.005 - 10.45 51.08 1952 0.000 0.000 0.000 0.592 0.008 0.000 0.283 0.022 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.012 0.001 0.034 0.000 0.000 0.952 - 10.45 51.08 1953 0.000 0.000 0.000 0.648 0.009 0.000 0.321 0.025 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.014 0.001 0.039 0.000 0.000 1.057 - 10.45 51.08 1954 0.000 0.000 0.000 0.575 0.008 0.000 0.292 0.022 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.012 0.001 0.034 0.000 0.000 0.945 - 10.45 51.08 1955 0.000 0.000 0.000 0.502 0.008 0.000 0.303 0.022 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.013 0.001 0.035 0.000 0.000 0.885 - 10.45 51.08 1956 0.000 0.000 0.000 0.501 0.009 0.000 0.322 0.020 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.013 0.001 0.033 0.000 0.000 0.898 - 10.45 51.08 1957 0.000 0.000 0.000 0.563 0.009 0.000 0.362 0.017 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.014 0.001 0.031 0.000 0.000 0.998 - 10.45 51.08 1958 0.000 0.000 0.000 0.528 0.009 0.000 0.354 0.017 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.014 0.001 0.031 0.000 0.000 0.954 - 10.45 51.08 1959 0.000 0.000 0.000 0.439 0.011 0.000 0.479 0.022 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.017 0.002 0.039 0.000 0.000 1.010 - 10.45 51.08 1960 0.000 0.000 0.000 0.397 0.010 0.000 0.445 0.019 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.016 0.001 0.031 0.000 0.000 0.920 - 10.45 51.08 1961 0.000 0.000 0.000 0.412 0.011 0.000 0.477 0.021 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.016 0.001 0.033 0.000 0.000 0.971 - 10.45 51.08 1962 0.000 0.000 0.000 0.401 0.010 0.000 0.457 0.020 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.012 0.001 0.031 0.000 0.000 0.932 - 10.45 51.08 1963 0.000 0.000 0.000 0.411 0.008 0.000 0.500 0.020 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.012 0.001 0.032 0.000 0.000 0.985 - 10.45 51.08 1964 0.000 0.000 0.000 0.428 0.008 0.000 0.544 0.020 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.012 0.001 0.028 0.000 0.000 1.041 - 10.45 51.08 1965 0.000 0.000 0.000 0.396 0.007 0.000 0.499 0.019 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.011 0.001 0.026 0.000 0.000 0.959 - 10.45 51.08 1966 0.000 0.000 0.000 0.231 0.010 0.000 0.640 0.024 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.014 0.001 0.033 0.000 0.000 0.954 - 10.45 51.08 1967 0.000 0.000 0.000 0.229 0.009 0.000 0.646 0.022 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.013 0.001 0.031 0.000 0.000 0.952 - 10.45 51.08 1968 0.000 0.000 0.000 0.230 0.006 0.000 0.657 0.023 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.014 0.001 0.032 0.000 0.000 0.961 - 10.45 51.08 1969 0.000 0.000 0.000 0.221 0.006 0.000 0.658 0.021 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.012 0.001 0.029 0.000 0.000 0.947 - 10.45 51.08 1970 0.000 0.000 0.000 0.216 0.005 0.000 0.659 0.015 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.012 0.001 0.027 0.000 0.000 0.935 - 10.45 51.08 1971 0.000 0.000 0.000 0.227 0.005 0.000 0.712 0.016 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.012 0.001 0.028 0.000 0.000 1.002 - 10.45 51.08 1972 0.000 0.000 0.000 0.220 0.005 0.000 0.672 0.015 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.011 0.001 0.026 0.000 0.000 0.949 - 10.45 51.08 1973 0.000 0.000 0.000 0.212 0.005 0.000 0.690 0.014 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.011 0.001 0.025 0.000 0.000 0.958 - 10.45 51.08 1974 0.000 0.000 0.000 0.225 0.005 0.000 0.719 0.015 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.011 0.001 0.027 0.000 0.000 1.003 - 10.45 51.08 1975 0.000 0.000 0.000 0.212 0.004 0.000 0.710 0.010 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.010 0.001 0.021 0.000 0.000 0.968 - 10.45 51.08 1976 0.000 0.000 0.000 0.216 0.004 0.000 0.757 0.009 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.009 0.001 0.018 0.000 0.000 1.014 - 10.45 51.08 1977 0.000 0.000 0.000 0.207 0.004 0.000 0.719 0.006 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.010 0.001 0.019 0.000 0.000 0.966 - 10.45 51.08 1978 0.000 0.000 0.000 0.199 0.004 0.000 0.708 0.006 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.009 0.001 0.015 0.000 0.000 0.942 - 10.45 51.08 1979 0.000 0.000 0.000 0.186 0.004 0.000 0.691 0.006 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.009 0.001 0.014 0.000 0.000 0.911 - 10.45 51.08 1980 0.000 0.000 0.000 0.183 0.003 0.000 0.697 0.005 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.008 0.001 0.013 0.000 0.000 0.911 - 10.45 51.08 1981 0.000 0.000 0.000 0.104 0.004 0.000 0.816 0.006 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.010 0.001 0.016 0.000 0.000 0.957 - 10.45 51.08 1982 0.000 0.000 0.000 0.101 0.004 0.000 0.836 0.006 0.000 0.000 0.001 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.009 0.001 0.014 0.000 0.000 0.970 - 10.45 51.08 1983 0.000 0.000 0.000 0.106 0.004 0.000 0.892 0.003 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.006 0.001 0.014 0.000 0.000 1.026 - 10.45 51.08 1984 0.000 0.000 0.000 0.087 0.003 0.000 0.745 0.002 0.000 0.000 0.001 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.002 0.000 0.012 0.000 0.000 0.854 - 10.45 51.08 1985 0.000 0.000 0.000 0.098 0.003 0.000 0.874 0.003 0.000 0.000 0.001 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.003 0.000 0.013 0.000 0.000 0.995 - 10.45 51.08 1986 0.000 0.000 0.000 0.095 0.003 0.000 0.867 0.002 0.000 0.000 0.001 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.002 0.000 0.012 0.000 0.000 0.982 - 10.45 51.08 1987 0.000 0.000 0.000 0.092 0.003 0.000 0.832 0.002 0.000 0.000 0.001 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.002 0.000 0.011 0.000 0.000 0.943 - 10.45 51.08 1988 0.000 0.000 0.000 0.093 0.003 0.000 0.913 0.002 0.000 0.000 0.001 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.002 0.000 0.012 0.000 0.000 1.027 - 10.45 51.08 1989 0.000 0.000 0.000 0.099 0.003 0.000 1.009 0.002 0.000 0.000 0.001 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.002 0.000 0.012 0.000 0.000 1.129 - 10.45 51.08 1990 0.000 0.000 0.000 0.102 0.003 0.000 1.042 0.003 0.000 0.000 0.001 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.003 0.000 0.013 0.000 0.000 1.166 - 10.45 51.08 1991 0.000 0.000 0.000 0.095 0.001 0.000 0.961 0.002 0.000 0.000 0.001 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.002 0.000 0.010 0.000 0.000 1.073 - 10.45 51.08 1992 0.000 0.000 0.000 0.085 0.000 0.000 0.927 0.002 0.000 0.000 0.001 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.002 0.000 0.009 0.000 0.000 1.025 - 10.45 51.08 1993 0.000 0.000 0.000 0.087 0.000 0.000 0.986 0.002 0.000 0.000 0.001 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.002 0.000 0.009 0.000 0.000 1.087 - 10.45 51.08 1994 0.000 0.000 0.000 0.086 0.000 0.000 0.992 0.002 0.000 0.000 0.001 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.002 0.000 0.007 0.000 0.000 1.088 - 10.45 51.08 1995 0.000 0.000 0.000 0.080 0.000 0.000 0.945 0.001 0.000 0.000 0.001 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.001 0.000 0.006 0.000 0.000 1.034 - 10.45 51.08 1996 0.000 0.000 0.000 0.072 0.000 0.000 0.864 0.001 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.001 0.000 0.005 0.000 0.000 0.945 - 10.45 51.08 1997 0.000 0.000 0.000 0.079 0.000 0.000 0.970 0.001 0.000 0.000 0.001 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.001 0.000 0.006 0.000 0.000 1.057 - 10.45 51.08 1998 0.000 0.000 0.000 0.074 0.000 0.000 0.983 0.001 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.001 0.000 0.005 0.000 0.000 1.065 - 10.45 51.08 1999 0.000 0.000 0.000 0.000 0.000 0.000 1.079 0.001 0.000 0.000 0.001 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.001 0.000 0.006 0.000 0.000 1.088 - 10.45 51.08 2000 0.000 0.000 0.000 0.000 0.000 0.000 1.061 0.001 0.000 0.000 0.001 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.001 0.000 0.005 0.000 0.000 1.069 - 10.45 51.08 2001 0.000 0.000 0.000 0.000 0.000 0.000 1.051 0.001 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.001 0.000 0.004 0.000 0.000 1.058 - 10.45 51.08 2002 0.000 0.000 0.000 0.000 0.000 0.000 1.003 0.001 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.001 0.000 0.003 0.000 0.000 1.009 - 10.45 51.08 2003 0.000 0.000 0.000 0.000 0.000 0.000 1.092 0.001 0.000 0.000 0.001 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.001 0.000 0.003 0.000 0.000 1.098 - 10.45 51.08 2004 0.000 0.000 0.000 0.000 0.000 0.000 1.141 0.001 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.001 0.000 0.003 0.000 0.000 1.147 - 10.45 51.08 2005 0.000 0.000 0.000 0.000 0.000 0.000 1.150 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.001 0.000 0.003 0.000 0.000 1.154 - 10.45 51.08 2006 0.000 0.000 0.000 0.000 0.000 0.000 1.161 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.001 0.000 0.002 0.000 0.000 1.165 - 10.45 51.08 2007 0.000 0.000 0.000 0.000 0.000 0.000 1.154 0.000 0.000 0.000 0.001 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.001 0.000 0.003 0.000 0.000 1.158 - 10.45 51.08 2008 0.000 0.000 0.000 0.000 0.000 0.000 1.121 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.001 0.000 0.002 0.000 0.000 1.124 - 10.45 51.08 2009 0.000 0.000 0.000 0.000 0.000 0.000 1.118 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.001 0.000 0.001 0.000 0.000 1.120 - 10.45 51.08 2010 0.000 0.000 0.000 0.000 0.000 0.000 1.064 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.001 0.000 0.001 0.000 0.000 1.067 - 10.45 51.08 2011 0.000 0.000 0.000 0.000 0.000 0.000 1.214 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.001 0.000 0.001 0.000 0.000 1.217 - 10.45 51.08 2012 0.000 0.000 0.000 0.000 0.000 0.000 1.131 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.001 0.000 0.001 0.000 0.000 1.134 diff --git a/rLPJGUESS/inst/extdata/outputsForTests/run_iffire/outDirectory/aiso.out b/rLPJGUESS/inst/extdata/outputsForTests/run_iffire/outDirectory/aiso.out deleted file mode 100644 index 7d6e828..0000000 --- a/rLPJGUESS/inst/extdata/outputsForTests/run_iffire/outDirectory/aiso.out +++ /dev/null @@ -1,63 +0,0 @@ - Lon Lat Year Abi_alb BES Bet_pen Bet_pub Car_bet Cor_ave Fag_syl Fra_exc Jun_oxy MRS Pic_abi Pic_sit Pin_syl Pin_hal Pop_tre Que_coc Que_ile Que_pub Que_rob Til_cor Ulm_gla C3_gr C4_gr Total - 10.45 51.08 1951 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1952 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1953 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1954 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1955 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1956 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1957 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1958 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1959 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1960 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1961 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1962 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1963 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1964 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1965 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1966 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1967 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1968 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1969 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1970 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1971 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1972 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1973 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1974 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1975 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1976 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1977 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1978 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1979 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1980 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1981 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1982 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1983 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1984 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1985 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1986 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1987 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1988 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1989 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1990 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1991 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1992 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1993 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1994 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1995 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1996 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1997 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1998 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1999 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 2000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 2001 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 2002 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 2003 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 2004 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 2005 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 2006 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 2007 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 2008 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 2009 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 2010 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 2011 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 2012 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 diff --git a/rLPJGUESS/inst/extdata/outputsForTests/run_iffire/outDirectory/amon.out b/rLPJGUESS/inst/extdata/outputsForTests/run_iffire/outDirectory/amon.out deleted file mode 100644 index 7d6e828..0000000 --- a/rLPJGUESS/inst/extdata/outputsForTests/run_iffire/outDirectory/amon.out +++ /dev/null @@ -1,63 +0,0 @@ - Lon Lat Year Abi_alb BES Bet_pen Bet_pub Car_bet Cor_ave Fag_syl Fra_exc Jun_oxy MRS Pic_abi Pic_sit Pin_syl Pin_hal Pop_tre Que_coc Que_ile Que_pub Que_rob Til_cor Ulm_gla C3_gr C4_gr Total - 10.45 51.08 1951 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1952 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1953 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1954 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1955 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1956 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1957 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1958 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1959 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1960 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1961 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1962 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1963 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1964 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1965 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1966 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1967 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1968 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1969 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1970 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1971 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1972 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1973 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1974 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1975 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1976 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1977 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1978 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1979 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1980 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1981 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1982 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1983 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1984 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1985 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1986 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1987 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1988 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1989 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1990 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1991 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1992 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1993 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1994 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1995 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1996 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1997 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1998 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1999 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 2000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 2001 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 2002 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 2003 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 2004 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 2005 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 2006 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 2007 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 2008 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 2009 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 2010 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 2011 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 2012 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 diff --git a/rLPJGUESS/inst/extdata/outputsForTests/run_iffire/outDirectory/anpp.out b/rLPJGUESS/inst/extdata/outputsForTests/run_iffire/outDirectory/anpp.out deleted file mode 100644 index 9a42e15..0000000 --- a/rLPJGUESS/inst/extdata/outputsForTests/run_iffire/outDirectory/anpp.out +++ /dev/null @@ -1,63 +0,0 @@ - Lon Lat Year Abi_alb BES Bet_pen Bet_pub Car_bet Cor_ave Fag_syl Fra_exc Jun_oxy MRS Pic_abi Pic_sit Pin_syl Pin_hal Pop_tre Que_coc Que_ile Que_pub Que_rob Til_cor Ulm_gla C3_gr C4_gr Total - 10.45 51.08 1951 0.000 0.000 0.000 0.326 0.004 0.000 0.131 0.011 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.006 0.001 0.017 0.000 0.000 0.496 - 10.45 51.08 1952 0.000 0.000 0.000 0.292 0.004 0.000 0.143 0.011 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.006 0.001 0.017 0.000 0.000 0.474 - 10.45 51.08 1953 0.000 0.000 0.000 0.317 0.005 0.000 0.161 0.013 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.008 0.001 0.021 0.000 0.000 0.525 - 10.45 51.08 1954 0.000 0.000 0.000 0.275 0.004 0.000 0.143 0.011 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.006 0.001 0.017 0.000 0.000 0.456 - 10.45 51.08 1955 0.000 0.000 0.000 0.248 0.004 0.000 0.151 0.012 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.007 0.001 0.018 0.000 0.000 0.442 - 10.45 51.08 1956 0.000 0.000 0.000 0.250 0.005 0.000 0.164 0.011 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.007 0.001 0.018 0.000 0.000 0.454 - 10.45 51.08 1957 0.000 0.000 0.000 0.280 0.005 0.000 0.182 0.009 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.007 0.001 0.016 0.000 0.000 0.499 - 10.45 51.08 1958 0.000 0.000 0.000 0.251 0.005 0.000 0.170 0.009 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.007 0.001 0.016 0.000 0.000 0.457 - 10.45 51.08 1959 0.000 0.000 0.000 0.229 0.006 0.000 0.258 0.012 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.009 0.001 0.021 0.000 0.000 0.537 - 10.45 51.08 1960 0.000 0.000 0.000 0.200 0.005 0.000 0.231 0.010 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.008 0.001 0.016 0.000 0.000 0.472 - 10.45 51.08 1961 0.000 0.000 0.000 0.203 0.006 0.000 0.240 0.011 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.008 0.000 0.017 0.000 0.000 0.485 - 10.45 51.08 1962 0.000 0.000 0.000 0.208 0.006 0.000 0.236 0.010 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.006 0.000 0.017 0.000 0.000 0.484 - 10.45 51.08 1963 0.000 0.000 0.000 0.208 0.004 0.000 0.256 0.010 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.006 0.000 0.017 0.000 0.000 0.502 - 10.45 51.08 1964 0.000 0.000 0.000 0.210 0.004 0.000 0.272 0.010 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.006 0.000 0.014 0.000 0.000 0.517 - 10.45 51.08 1965 0.000 0.000 0.000 0.198 0.004 0.000 0.248 0.010 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.006 0.000 0.013 0.000 0.000 0.479 - 10.45 51.08 1966 0.000 0.000 0.000 0.119 0.005 0.000 0.336 0.013 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.008 0.001 0.018 0.000 0.000 0.500 - 10.45 51.08 1967 0.000 0.000 0.000 0.113 0.005 0.000 0.321 0.011 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.007 0.000 0.016 0.000 0.000 0.472 - 10.45 51.08 1968 0.000 0.000 0.000 0.115 0.003 0.000 0.330 0.012 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.007 0.000 0.016 0.000 0.000 0.484 - 10.45 51.08 1969 0.000 0.000 0.000 0.108 0.003 0.000 0.323 0.010 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.006 0.000 0.014 0.000 0.000 0.464 - 10.45 51.08 1970 0.000 0.000 0.000 0.105 0.002 0.000 0.320 0.007 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.006 0.000 0.013 0.000 0.000 0.454 - 10.45 51.08 1971 0.000 0.000 0.000 0.110 0.003 0.000 0.344 0.008 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.006 0.000 0.013 0.000 0.000 0.483 - 10.45 51.08 1972 0.000 0.000 0.000 0.110 0.002 0.000 0.325 0.007 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.005 0.000 0.013 0.000 0.000 0.463 - 10.45 51.08 1973 0.000 0.000 0.000 0.099 0.002 0.000 0.319 0.007 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.005 0.000 0.012 0.000 0.000 0.445 - 10.45 51.08 1974 0.000 0.000 0.000 0.109 0.002 0.000 0.338 0.008 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.006 0.000 0.013 0.000 0.000 0.477 - 10.45 51.08 1975 0.000 0.000 0.000 0.095 0.002 0.000 0.311 0.005 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.005 0.000 0.009 0.000 0.000 0.427 - 10.45 51.08 1976 0.000 0.000 0.000 0.100 0.002 0.000 0.348 0.004 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.004 0.000 0.007 0.000 0.000 0.465 - 10.45 51.08 1977 0.000 0.000 0.000 0.097 0.002 0.000 0.324 0.003 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.005 0.000 0.009 0.000 0.000 0.440 - 10.45 51.08 1978 0.000 0.000 0.000 0.094 0.002 0.000 0.324 0.003 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.004 0.000 0.007 0.000 0.000 0.436 - 10.45 51.08 1979 0.000 0.000 0.000 0.084 0.002 0.000 0.305 0.003 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.004 0.000 0.007 0.000 0.000 0.404 - 10.45 51.08 1980 0.000 0.000 0.000 0.085 0.002 0.000 0.314 0.002 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.004 0.000 0.006 0.000 0.000 0.413 - 10.45 51.08 1981 0.000 0.000 0.000 0.050 0.002 0.000 0.385 0.003 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.005 0.000 0.008 0.000 0.000 0.455 - 10.45 51.08 1982 0.000 0.000 0.000 0.044 0.002 0.000 0.363 0.002 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.004 0.000 0.006 0.000 0.000 0.421 - 10.45 51.08 1983 0.000 0.000 0.000 0.049 0.002 0.000 0.409 0.001 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.003 0.000 0.006 0.000 0.000 0.471 - 10.45 51.08 1984 0.000 0.000 0.000 0.039 0.002 0.000 0.326 0.001 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.001 0.000 0.006 0.000 0.000 0.375 - 10.45 51.08 1985 0.000 0.000 0.000 0.047 0.002 0.000 0.414 0.001 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.001 0.000 0.006 0.000 0.000 0.472 - 10.45 51.08 1986 0.000 0.000 0.000 0.044 0.001 0.000 0.393 0.001 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.001 0.000 0.005 0.000 0.000 0.446 - 10.45 51.08 1987 0.000 0.000 0.000 0.044 0.001 0.000 0.380 0.001 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.001 0.000 0.005 0.000 0.000 0.433 - 10.45 51.08 1988 0.000 0.000 0.000 0.041 0.001 0.000 0.401 0.001 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.001 0.000 0.006 0.000 0.000 0.452 - 10.45 51.08 1989 0.000 0.000 0.000 0.045 0.001 0.000 0.458 0.001 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.001 0.000 0.006 0.000 0.000 0.513 - 10.45 51.08 1990 0.000 0.000 0.000 0.048 0.002 0.000 0.476 0.001 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.001 0.000 0.006 0.000 0.000 0.534 - 10.45 51.08 1991 0.000 0.000 0.000 0.043 0.001 0.000 0.416 0.001 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.001 0.000 0.005 0.000 0.000 0.466 - 10.45 51.08 1992 0.000 0.000 0.000 0.034 0.000 0.000 0.370 0.001 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.001 0.000 0.004 0.000 0.000 0.409 - 10.45 51.08 1993 0.000 0.000 0.000 0.039 0.000 0.000 0.436 0.001 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.001 0.000 0.004 0.000 0.000 0.481 - 10.45 51.08 1994 0.000 0.000 0.000 0.035 0.000 0.000 0.396 0.001 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.001 0.000 0.003 0.000 0.000 0.436 - 10.45 51.08 1995 0.000 0.000 0.000 0.034 0.000 0.000 0.387 0.001 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.001 0.000 0.002 0.000 0.000 0.424 - 10.45 51.08 1996 0.000 0.000 0.000 0.033 0.000 0.000 0.374 0.001 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.001 0.000 0.002 0.000 0.000 0.410 - 10.45 51.08 1997 0.000 0.000 0.000 0.035 0.000 0.000 0.409 0.001 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.001 0.000 0.002 0.000 0.000 0.448 - 10.45 51.08 1998 0.000 0.000 0.000 0.031 0.000 0.000 0.412 0.001 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.001 0.000 0.002 0.000 0.000 0.447 - 10.45 51.08 1999 0.000 0.000 0.000 0.000 0.000 0.000 0.468 0.001 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.001 0.000 0.003 0.000 0.000 0.472 - 10.45 51.08 2000 0.000 0.000 0.000 0.000 0.000 0.000 0.439 0.001 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.001 0.000 0.002 0.000 0.000 0.442 - 10.45 51.08 2001 0.000 0.000 0.000 0.000 0.000 0.000 0.447 0.001 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.001 0.000 0.002 0.000 0.000 0.450 - 10.45 51.08 2002 0.000 0.000 0.000 0.000 0.000 0.000 0.401 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.001 0.000 0.000 0.404 - 10.45 51.08 2003 0.000 0.000 0.000 0.000 0.000 0.000 0.447 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.001 0.000 0.000 0.448 - 10.45 51.08 2004 0.000 0.000 0.000 0.000 0.000 0.000 0.513 0.001 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.001 0.000 0.002 0.000 0.000 0.516 - 10.45 51.08 2005 0.000 0.000 0.000 0.000 0.000 0.000 0.498 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.001 0.000 0.000 0.500 - 10.45 51.08 2006 0.000 0.000 0.000 0.000 0.000 0.000 0.473 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.001 0.000 0.000 0.474 - 10.45 51.08 2007 0.000 0.000 0.000 0.000 0.000 0.000 0.471 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.001 0.000 0.000 0.473 - 10.45 51.08 2008 0.000 0.000 0.000 0.000 0.000 0.000 0.453 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.001 0.000 0.000 0.454 - 10.45 51.08 2009 0.000 0.000 0.000 0.000 0.000 0.000 0.446 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.001 0.000 0.000 0.447 - 10.45 51.08 2010 0.000 0.000 0.000 0.000 0.000 0.000 0.437 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.438 - 10.45 51.08 2011 0.000 0.000 0.000 0.000 0.000 0.000 0.506 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.001 0.000 0.000 0.507 - 10.45 51.08 2012 0.000 0.000 0.000 0.000 0.000 0.000 0.444 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.445 diff --git a/rLPJGUESS/inst/extdata/outputsForTests/run_iffire/outDirectory/cflux.out b/rLPJGUESS/inst/extdata/outputsForTests/run_iffire/outDirectory/cflux.out deleted file mode 100644 index bcd5b80..0000000 --- a/rLPJGUESS/inst/extdata/outputsForTests/run_iffire/outDirectory/cflux.out +++ /dev/null @@ -1,63 +0,0 @@ - Lon Lat Year Veg Repr Soil Fire Est NEE - 10.45 51.08 1951 -0.496 0.050 0.372 0.000 0.000 -0.07414 - 10.45 51.08 1952 -0.474 0.047 0.414 0.000 0.000 -0.01342 - 10.45 51.08 1953 -0.525 0.053 0.471 0.000 0.000 -0.00175 - 10.45 51.08 1954 -0.456 0.046 0.369 0.000 -0.000 -0.04140 - 10.45 51.08 1955 -0.442 0.044 0.362 0.000 0.000 -0.03621 - 10.45 51.08 1956 -0.454 0.045 0.346 0.000 0.000 -0.06316 - 10.45 51.08 1957 -0.499 0.050 0.406 0.000 0.000 -0.04324 - 10.45 51.08 1958 -0.457 0.046 0.388 0.000 0.000 -0.02343 - 10.45 51.08 1959 -0.537 0.054 0.528 0.000 0.000 0.04462 - 10.45 51.08 1960 -0.472 0.047 0.424 0.000 -0.000 -0.00017 - 10.45 51.08 1961 -0.485 0.048 0.488 0.000 0.000 0.05176 - 10.45 51.08 1962 -0.484 0.048 0.419 0.000 0.000 -0.01679 - 10.45 51.08 1963 -0.502 0.050 0.396 0.000 0.000 -0.05611 - 10.45 51.08 1964 -0.517 0.052 0.462 0.000 0.000 -0.00273 - 10.45 51.08 1965 -0.479 0.048 0.359 0.000 0.000 -0.07180 - 10.45 51.08 1966 -0.500 0.050 0.452 0.000 0.000 0.00265 - 10.45 51.08 1967 -0.472 0.047 0.493 0.000 -0.000 0.06772 - 10.45 51.08 1968 -0.484 0.048 0.468 0.000 -0.000 0.03226 - 10.45 51.08 1969 -0.464 0.046 0.446 0.000 0.000 0.02800 - 10.45 51.08 1970 -0.454 0.045 0.420 0.000 0.000 0.01124 - 10.45 51.08 1971 -0.483 0.048 0.508 0.000 0.000 0.07303 - 10.45 51.08 1972 -0.463 0.046 0.366 0.000 0.000 -0.05043 - 10.45 51.08 1973 -0.445 0.044 0.474 0.000 0.000 0.07331 - 10.45 51.08 1974 -0.477 0.048 0.404 0.000 0.000 -0.02555 - 10.45 51.08 1975 -0.427 0.043 0.477 0.000 0.000 0.09239 - 10.45 51.08 1976 -0.465 0.047 0.489 0.000 0.000 0.07024 - 10.45 51.08 1977 -0.440 0.044 0.358 0.000 0.000 -0.03820 - 10.45 51.08 1978 -0.436 0.044 0.388 0.000 0.000 -0.00425 - 10.45 51.08 1979 -0.404 0.040 0.398 0.000 -0.000 0.03447 - 10.45 51.08 1980 -0.413 0.041 0.397 0.000 0.000 0.02558 - 10.45 51.08 1981 -0.455 0.045 0.415 0.000 0.000 0.00619 - 10.45 51.08 1982 -0.421 0.042 0.569 0.000 0.000 0.18961 - 10.45 51.08 1983 -0.471 0.047 0.486 0.000 0.000 0.06261 - 10.45 51.08 1984 -0.375 0.038 0.348 0.000 0.000 0.01029 - 10.45 51.08 1985 -0.472 0.047 0.447 0.000 0.000 0.02222 - 10.45 51.08 1986 -0.446 0.045 0.409 0.000 0.000 0.00751 - 10.45 51.08 1987 -0.433 0.043 0.337 0.000 0.000 -0.05260 - 10.45 51.08 1988 -0.452 0.045 0.478 0.000 0.000 0.07151 - 10.45 51.08 1989 -0.513 0.051 0.473 0.000 0.000 0.01137 - 10.45 51.08 1990 -0.534 0.053 0.444 0.000 0.000 -0.03685 - 10.45 51.08 1991 -0.466 0.047 0.446 0.000 0.000 0.02617 - 10.45 51.08 1992 -0.409 0.041 0.428 0.000 0.000 0.05984 - 10.45 51.08 1993 -0.481 0.048 0.371 0.000 0.000 -0.06144 - 10.45 51.08 1994 -0.436 0.044 0.413 0.000 -0.000 0.02144 - 10.45 51.08 1995 -0.424 0.042 0.373 0.000 0.000 -0.00799 - 10.45 51.08 1996 -0.410 0.041 0.309 0.000 0.000 -0.05986 - 10.45 51.08 1997 -0.448 0.045 0.408 0.000 0.000 0.00471 - 10.45 51.08 1998 -0.447 0.045 0.381 0.000 0.000 -0.02123 - 10.45 51.08 1999 -0.472 0.047 0.446 0.000 0.000 0.02132 - 10.45 51.08 2000 -0.442 0.044 0.465 0.000 0.000 0.06714 - 10.45 51.08 2001 -0.450 0.045 0.428 0.000 0.000 0.02289 - 10.45 51.08 2002 -0.404 0.040 0.388 0.000 0.000 0.02435 - 10.45 51.08 2003 -0.448 0.045 0.484 0.000 0.000 0.08001 - 10.45 51.08 2004 -0.516 0.052 0.418 0.000 0.000 -0.04672 - 10.45 51.08 2005 -0.500 0.050 0.405 0.000 0.000 -0.04473 - 10.45 51.08 2006 -0.474 0.047 0.421 0.000 0.000 -0.00572 - 10.45 51.08 2007 -0.473 0.047 0.385 0.000 0.000 -0.04013 - 10.45 51.08 2008 -0.454 0.045 0.433 0.000 0.000 0.02427 - 10.45 51.08 2009 -0.447 0.045 0.397 0.000 0.000 -0.00470 - 10.45 51.08 2010 -0.438 0.044 0.347 0.000 0.000 -0.04761 - 10.45 51.08 2011 -0.507 0.051 0.421 0.000 0.000 -0.03478 - 10.45 51.08 2012 -0.445 0.045 0.395 0.000 0.000 -0.00560 diff --git a/rLPJGUESS/inst/extdata/outputsForTests/run_iffire/outDirectory/clitter.out b/rLPJGUESS/inst/extdata/outputsForTests/run_iffire/outDirectory/clitter.out deleted file mode 100644 index ea5af81..0000000 --- a/rLPJGUESS/inst/extdata/outputsForTests/run_iffire/outDirectory/clitter.out +++ /dev/null @@ -1,63 +0,0 @@ - Lon Lat Year Abi_alb BES Bet_pen Bet_pub Car_bet Cor_ave Fag_syl Fra_exc Jun_oxy MRS Pic_abi Pic_sit Pin_syl Pin_hal Pop_tre Que_coc Que_ile Que_pub Que_rob Til_cor Ulm_gla C3_gr C4_gr Total - 10.45 51.08 1951 0.000 0.000 0.000 1.229 0.002 0.000 0.057 0.005 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.003 0.000 0.009 0.000 0.000 1.305 - 10.45 51.08 1952 0.000 0.000 0.000 0.090 0.002 0.000 0.059 0.006 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.003 0.000 0.009 0.000 0.000 0.169 - 10.45 51.08 1953 0.000 0.000 0.000 0.091 0.002 0.000 0.062 0.006 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.003 0.000 0.009 0.000 0.000 0.174 - 10.45 51.08 1954 0.000 0.000 0.000 1.295 0.002 0.000 0.066 0.006 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.003 0.000 0.010 0.000 0.000 1.382 - 10.45 51.08 1955 0.000 0.000 0.000 0.080 0.002 0.000 0.068 0.052 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.004 0.000 0.055 0.000 0.000 0.260 - 10.45 51.08 1956 0.000 0.000 0.000 0.080 0.002 0.000 0.070 0.051 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.004 0.000 0.055 0.000 0.000 0.263 - 10.45 51.08 1957 0.000 0.000 0.000 0.081 0.003 0.000 0.073 0.005 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.004 0.000 0.008 0.000 0.000 0.173 - 10.45 51.08 1958 0.000 0.000 0.000 2.686 0.003 0.000 0.076 0.005 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.004 0.000 0.008 0.000 0.000 2.783 - 10.45 51.08 1959 0.000 0.000 0.000 0.055 0.003 0.000 0.079 0.005 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.004 0.000 0.057 0.000 0.000 0.202 - 10.45 51.08 1960 0.000 0.000 0.000 0.058 0.003 0.000 0.087 0.005 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.004 0.014 0.008 0.000 0.000 0.180 - 10.45 51.08 1961 0.000 0.000 0.000 0.059 0.003 0.000 0.091 0.005 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.054 0.000 0.008 0.000 0.000 0.222 - 10.45 51.08 1962 0.000 0.000 0.000 0.060 0.040 0.000 0.096 0.005 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.003 0.000 0.009 0.000 0.000 0.215 - 10.45 51.08 1963 0.000 0.000 0.000 0.061 0.002 0.000 0.100 0.006 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.003 0.000 0.061 0.000 0.000 0.233 - 10.45 51.08 1964 0.000 0.000 0.000 0.062 0.002 0.000 0.105 0.006 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.003 0.000 0.008 0.000 0.000 0.186 - 10.45 51.08 1965 0.000 0.000 0.000 3.112 0.002 0.000 0.110 0.006 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.003 0.000 0.008 0.000 0.000 3.241 - 10.45 51.08 1966 0.000 0.000 0.000 0.032 0.002 0.000 0.112 0.006 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.003 0.000 0.008 0.000 0.000 0.163 - 10.45 51.08 1967 0.000 0.000 0.000 0.033 0.043 0.000 0.120 0.006 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.004 0.000 0.008 0.000 0.000 0.213 - 10.45 51.08 1968 0.000 0.000 0.000 0.033 0.002 0.000 0.126 0.006 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.004 0.000 0.008 0.000 0.000 0.179 - 10.45 51.08 1969 0.000 0.000 0.000 0.034 0.002 0.000 0.131 0.063 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.004 0.000 0.009 0.000 0.000 0.242 - 10.45 51.08 1970 0.000 0.000 0.000 0.034 0.002 0.000 0.136 0.005 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.004 0.000 0.008 0.000 0.000 0.189 - 10.45 51.08 1971 0.000 0.000 0.000 0.034 0.002 0.000 0.139 0.005 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.004 0.000 0.008 0.000 0.000 0.192 - 10.45 51.08 1972 0.000 0.000 0.000 0.034 0.002 0.000 0.144 0.005 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.003 0.000 0.008 0.000 0.000 0.196 - 10.45 51.08 1973 0.000 0.000 0.000 0.034 0.002 0.000 0.147 0.005 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.003 0.000 0.008 0.000 0.000 0.198 - 10.45 51.08 1974 0.000 0.000 0.000 0.034 0.002 0.000 0.149 0.063 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.003 0.000 0.067 0.000 0.000 0.318 - 10.45 51.08 1975 0.000 0.000 0.000 0.034 0.002 0.000 0.151 0.003 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.003 0.000 0.007 0.000 0.000 0.200 - 10.45 51.08 1976 0.000 0.000 0.000 0.033 0.001 0.000 0.152 0.062 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.003 0.000 0.006 0.000 0.000 0.259 - 10.45 51.08 1977 0.000 0.000 0.000 0.033 0.001 0.000 0.156 0.002 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.003 0.000 0.066 0.000 0.000 0.261 - 10.45 51.08 1978 0.000 0.000 0.000 0.033 0.001 0.000 0.156 0.002 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.003 0.000 0.005 0.000 0.000 0.200 - 10.45 51.08 1979 0.000 0.000 0.000 0.032 0.001 0.000 0.157 0.002 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.003 0.000 0.005 0.000 0.000 0.201 - 10.45 51.08 1980 0.000 0.000 0.000 2.001 0.001 0.000 0.157 0.002 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.003 0.000 0.005 0.000 0.000 2.169 - 10.45 51.08 1981 0.000 0.000 0.000 0.015 0.001 0.000 0.158 0.002 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.003 0.000 0.004 0.000 0.000 0.183 - 10.45 51.08 1982 0.000 0.000 0.000 0.015 0.001 0.000 0.162 0.063 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.064 0.000 0.004 0.000 0.000 0.310 - 10.45 51.08 1983 0.000 0.000 0.000 0.015 0.001 0.000 0.164 0.001 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.063 0.000 0.004 0.000 0.000 0.249 - 10.45 51.08 1984 0.000 0.000 0.000 0.015 0.001 0.000 0.169 0.001 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.001 0.016 0.004 0.000 0.000 0.207 - 10.45 51.08 1985 0.000 0.000 0.000 0.015 0.001 0.000 0.168 0.001 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.001 0.000 0.004 0.000 0.000 0.190 - 10.45 51.08 1986 0.000 0.000 0.000 0.015 0.001 0.000 0.172 0.001 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.001 0.000 0.004 0.000 0.000 0.194 - 10.45 51.08 1987 0.000 0.000 0.000 0.015 0.001 0.000 0.175 0.001 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.001 0.000 0.004 0.000 0.000 0.196 - 10.45 51.08 1988 0.000 0.000 0.000 0.014 0.001 0.000 0.176 0.001 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.001 0.000 0.004 0.000 0.000 0.197 - 10.45 51.08 1989 0.000 0.000 0.000 0.014 0.001 0.000 0.179 0.001 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.001 0.000 0.004 0.000 0.000 0.199 - 10.45 51.08 1990 0.000 0.000 0.000 0.014 0.046 0.000 0.184 0.001 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.001 0.000 0.003 0.000 0.000 0.249 - 10.45 51.08 1991 0.000 0.000 0.000 0.014 0.046 0.000 0.189 0.001 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.001 0.000 0.003 0.000 0.000 0.254 - 10.45 51.08 1992 0.000 0.000 0.000 0.014 0.000 0.000 0.191 0.001 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.001 0.000 0.003 0.000 0.000 0.210 - 10.45 51.08 1993 0.000 0.000 0.000 0.014 0.000 0.000 0.190 0.001 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.001 0.000 0.067 0.000 0.000 0.272 - 10.45 51.08 1994 0.000 0.000 0.000 0.013 0.000 0.000 0.192 0.001 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.001 0.000 0.002 0.000 0.000 0.209 - 10.45 51.08 1995 0.000 0.000 0.000 0.013 0.000 0.000 0.193 0.001 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.001 0.000 0.002 0.000 0.000 0.209 - 10.45 51.08 1996 0.000 0.000 0.000 0.013 0.000 0.000 0.192 0.001 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.001 0.000 0.002 0.000 0.000 0.208 - 10.45 51.08 1997 0.000 0.000 0.000 0.012 0.000 0.000 0.191 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.002 0.000 0.000 0.206 - 10.45 51.08 1998 0.000 0.000 0.000 2.392 0.000 0.000 0.192 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.002 0.000 0.000 2.587 - 10.45 51.08 1999 0.000 0.000 0.000 0.000 0.000 0.000 0.193 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.002 0.000 0.000 0.196 - 10.45 51.08 2000 0.000 0.000 0.000 0.000 0.000 0.000 0.196 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.066 0.000 0.000 0.263 - 10.45 51.08 2001 0.000 0.000 0.000 0.000 0.000 0.000 0.198 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.001 0.000 0.000 0.200 - 10.45 51.08 2002 0.000 0.000 0.000 0.000 0.000 0.000 0.200 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.001 0.000 0.000 0.202 - 10.45 51.08 2003 0.000 0.000 0.000 0.000 0.000 0.000 0.199 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.001 0.000 0.000 0.201 - 10.45 51.08 2004 0.000 0.000 0.000 0.000 0.000 0.000 0.202 0.064 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.001 0.000 0.000 0.268 - 10.45 51.08 2005 0.000 0.000 0.000 0.000 0.000 0.000 0.206 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.001 0.000 0.000 0.207 - 10.45 51.08 2006 0.000 0.000 0.000 0.000 0.000 0.000 0.209 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.001 0.000 0.000 0.210 - 10.45 51.08 2007 0.000 0.000 0.000 0.000 0.000 0.000 0.211 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.065 0.000 0.000 0.276 - 10.45 51.08 2008 0.000 0.000 0.000 0.000 0.000 0.000 0.212 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.001 0.000 0.000 0.213 - 10.45 51.08 2009 0.000 0.000 0.000 0.000 0.000 0.000 0.213 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.214 - 10.45 51.08 2010 0.000 0.000 0.000 0.000 0.000 0.000 0.212 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.213 - 10.45 51.08 2011 0.000 0.000 0.000 0.000 0.000 0.000 0.211 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.212 - 10.45 51.08 2012 0.000 0.000 0.000 0.000 0.000 0.000 0.214 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.215 diff --git a/rLPJGUESS/inst/extdata/outputsForTests/run_iffire/outDirectory/cmass.out b/rLPJGUESS/inst/extdata/outputsForTests/run_iffire/outDirectory/cmass.out deleted file mode 100644 index 47b99a4..0000000 --- a/rLPJGUESS/inst/extdata/outputsForTests/run_iffire/outDirectory/cmass.out +++ /dev/null @@ -1,63 +0,0 @@ - Lon Lat Year Abi_alb BES Bet_pen Bet_pub Car_bet Cor_ave Fag_syl Fra_exc Jun_oxy MRS Pic_abi Pic_sit Pin_syl Pin_hal Pop_tre Que_coc Que_ile Que_pub Que_rob Til_cor Ulm_gla C3_gr C4_gr Total - 10.45 51.08 1951 0.000 0.000 0.000 7.889 0.128 0.000 1.541 0.299 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.171 0.026 0.470 0.000 0.000 10.525 - 10.45 51.08 1952 0.000 0.000 0.000 8.062 0.130 0.000 1.611 0.304 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.174 0.026 0.477 0.000 0.000 10.783 - 10.45 51.08 1953 0.000 0.000 0.000 8.256 0.132 0.000 1.694 0.310 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.177 0.026 0.487 0.000 0.000 11.082 - 10.45 51.08 1954 0.000 0.000 0.000 7.208 0.134 0.000 1.757 0.313 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.179 0.026 0.493 0.000 0.000 10.110 - 10.45 51.08 1955 0.000 0.000 0.000 7.352 0.135 0.000 1.826 0.272 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.182 0.026 0.454 0.000 0.000 10.248 - 10.45 51.08 1956 0.000 0.000 0.000 7.496 0.137 0.000 1.904 0.230 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.184 0.027 0.415 0.000 0.000 10.393 - 10.45 51.08 1957 0.000 0.000 0.000 7.668 0.139 0.000 1.995 0.234 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.187 0.027 0.421 0.000 0.000 10.670 - 10.45 51.08 1958 0.000 0.000 0.000 5.207 0.140 0.000 2.071 0.237 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.189 0.027 0.426 0.000 0.000 8.298 - 10.45 51.08 1959 0.000 0.000 0.000 5.358 0.143 0.000 2.225 0.243 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.194 0.028 0.388 0.000 0.000 8.580 - 10.45 51.08 1960 0.000 0.000 0.000 5.480 0.145 0.000 2.346 0.247 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.197 0.014 0.395 0.000 0.000 8.825 - 10.45 51.08 1961 0.000 0.000 0.000 5.603 0.147 0.000 2.471 0.251 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.151 0.014 0.402 0.000 0.000 9.039 - 10.45 51.08 1962 0.000 0.000 0.000 5.730 0.112 0.000 2.587 0.255 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.153 0.014 0.408 0.000 0.000 9.260 - 10.45 51.08 1963 0.000 0.000 0.000 5.856 0.114 0.000 2.718 0.259 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.155 0.014 0.362 0.000 0.000 9.478 - 10.45 51.08 1964 0.000 0.000 0.000 5.982 0.115 0.000 2.859 0.262 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.157 0.014 0.367 0.000 0.000 9.757 - 10.45 51.08 1965 0.000 0.000 0.000 3.048 0.116 0.000 2.972 0.265 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.159 0.015 0.371 0.000 0.000 6.947 - 10.45 51.08 1966 0.000 0.000 0.000 3.123 0.119 0.000 3.163 0.271 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.163 0.015 0.380 0.000 0.000 7.234 - 10.45 51.08 1967 0.000 0.000 0.000 3.192 0.080 0.000 3.332 0.275 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.165 0.015 0.386 0.000 0.000 7.446 - 10.45 51.08 1968 0.000 0.000 0.000 3.263 0.081 0.000 3.503 0.280 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.168 0.015 0.392 0.000 0.000 7.702 - 10.45 51.08 1969 0.000 0.000 0.000 3.326 0.082 0.000 3.663 0.226 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.170 0.015 0.396 0.000 0.000 7.878 - 10.45 51.08 1970 0.000 0.000 0.000 3.386 0.083 0.000 3.815 0.228 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.171 0.015 0.399 0.000 0.000 8.098 - 10.45 51.08 1971 0.000 0.000 0.000 3.451 0.083 0.000 3.985 0.230 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.173 0.015 0.403 0.000 0.000 8.341 - 10.45 51.08 1972 0.000 0.000 0.000 3.516 0.084 0.000 4.133 0.232 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.174 0.015 0.406 0.000 0.000 8.561 - 10.45 51.08 1973 0.000 0.000 0.000 3.571 0.084 0.000 4.274 0.234 0.000 0.000 0.001 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.175 0.015 0.409 0.000 0.000 8.763 - 10.45 51.08 1974 0.000 0.000 0.000 3.636 0.085 0.000 4.430 0.177 0.000 0.000 0.001 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.177 0.016 0.354 0.000 0.000 8.875 - 10.45 51.08 1975 0.000 0.000 0.000 3.688 0.085 0.000 4.558 0.178 0.000 0.000 0.001 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.178 0.016 0.356 0.000 0.000 9.059 - 10.45 51.08 1976 0.000 0.000 0.000 3.745 0.085 0.000 4.719 0.119 0.000 0.000 0.001 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.178 0.016 0.356 0.000 0.000 9.218 - 10.45 51.08 1977 0.000 0.000 0.000 3.799 0.086 0.000 4.854 0.119 0.000 0.000 0.001 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.179 0.016 0.298 0.000 0.000 9.353 - 10.45 51.08 1978 0.000 0.000 0.000 3.852 0.086 0.000 4.990 0.120 0.000 0.000 0.001 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.180 0.016 0.300 0.000 0.000 9.544 - 10.45 51.08 1979 0.000 0.000 0.000 3.895 0.086 0.000 5.107 0.121 0.000 0.000 0.001 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.181 0.016 0.301 0.000 0.000 9.708 - 10.45 51.08 1980 0.000 0.000 0.000 1.970 0.087 0.000 5.232 0.121 0.000 0.000 0.001 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.181 0.016 0.302 0.000 0.000 7.910 - 10.45 51.08 1981 0.000 0.000 0.000 2.000 0.087 0.000 5.421 0.122 0.000 0.000 0.001 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.183 0.016 0.305 0.000 0.000 8.136 - 10.45 51.08 1982 0.000 0.000 0.000 2.024 0.088 0.000 5.586 0.061 0.000 0.000 0.001 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.123 0.016 0.306 0.000 0.000 8.205 - 10.45 51.08 1983 0.000 0.000 0.000 2.053 0.088 0.000 5.790 0.062 0.000 0.000 0.001 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.062 0.016 0.308 0.000 0.000 8.380 - 10.45 51.08 1984 0.000 0.000 0.000 2.073 0.088 0.000 5.915 0.062 0.000 0.000 0.001 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.062 0.000 0.309 0.000 0.000 8.510 - 10.45 51.08 1985 0.000 0.000 0.000 2.101 0.089 0.000 6.120 0.062 0.000 0.000 0.001 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.062 0.000 0.311 0.000 0.000 8.746 - 10.45 51.08 1986 0.000 0.000 0.000 2.126 0.089 0.000 6.301 0.062 0.000 0.000 0.001 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.062 0.000 0.311 0.000 0.000 8.953 - 10.45 51.08 1987 0.000 0.000 0.000 2.151 0.089 0.000 6.468 0.062 0.000 0.000 0.001 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.062 0.000 0.312 0.000 0.000 9.146 - 10.45 51.08 1988 0.000 0.000 0.000 2.174 0.089 0.000 6.653 0.063 0.000 0.000 0.001 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.063 0.000 0.314 0.000 0.000 9.356 - 10.45 51.08 1989 0.000 0.000 0.000 2.201 0.090 0.000 6.886 0.063 0.000 0.000 0.001 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.063 0.000 0.315 0.000 0.000 9.619 - 10.45 51.08 1990 0.000 0.000 0.000 2.229 0.045 0.000 7.130 0.063 0.000 0.000 0.001 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.063 0.000 0.317 0.000 0.000 9.850 - 10.45 51.08 1991 0.000 0.000 0.000 2.254 0.000 0.000 7.316 0.064 0.000 0.000 0.001 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.064 0.000 0.318 0.000 0.000 10.015 - 10.45 51.08 1992 0.000 0.000 0.000 2.271 0.000 0.000 7.457 0.064 0.000 0.000 0.001 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.064 0.000 0.318 0.000 0.000 10.174 - 10.45 51.08 1993 0.000 0.000 0.000 2.293 0.000 0.000 7.659 0.064 0.000 0.000 0.001 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.064 0.000 0.255 0.000 0.000 10.335 - 10.45 51.08 1994 0.000 0.000 0.000 2.311 0.000 0.000 7.824 0.064 0.000 0.000 0.001 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.064 0.000 0.255 0.000 0.000 10.518 - 10.45 51.08 1995 0.000 0.000 0.000 2.328 0.000 0.000 7.979 0.064 0.000 0.000 0.001 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.064 0.000 0.254 0.000 0.000 10.690 - 10.45 51.08 1996 0.000 0.000 0.000 2.345 0.000 0.000 8.123 0.064 0.000 0.000 0.001 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.064 0.000 0.254 0.000 0.000 10.851 - 10.45 51.08 1997 0.000 0.000 0.000 2.364 0.000 0.000 8.300 0.064 0.000 0.000 0.001 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.064 0.000 0.255 0.000 0.000 11.048 - 10.45 51.08 1998 0.000 0.000 0.000 0.000 0.000 0.000 8.479 0.064 0.000 0.000 0.001 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.064 0.000 0.255 0.000 0.000 8.863 - 10.45 51.08 1999 0.000 0.000 0.000 0.000 0.000 0.000 8.708 0.064 0.000 0.000 0.001 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.064 0.000 0.256 0.000 0.000 9.092 - 10.45 51.08 2000 0.000 0.000 0.000 0.000 0.000 0.000 8.906 0.064 0.000 0.000 0.001 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.064 0.000 0.192 0.000 0.000 9.227 - 10.45 51.08 2001 0.000 0.000 0.000 0.000 0.000 0.000 9.111 0.064 0.000 0.000 0.001 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.064 0.000 0.192 0.000 0.000 9.432 - 10.45 51.08 2002 0.000 0.000 0.000 0.000 0.000 0.000 9.272 0.064 0.000 0.000 0.001 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.064 0.000 0.192 0.000 0.000 9.593 - 10.45 51.08 2003 0.000 0.000 0.000 0.000 0.000 0.000 9.475 0.064 0.000 0.000 0.001 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.064 0.000 0.192 0.000 0.000 9.796 - 10.45 51.08 2004 0.000 0.000 0.000 0.000 0.000 0.000 9.735 0.000 0.000 0.000 0.001 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.064 0.000 0.192 0.000 0.000 9.993 - 10.45 51.08 2005 0.000 0.000 0.000 0.000 0.000 0.000 9.978 0.000 0.000 0.000 0.001 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.064 0.000 0.193 0.000 0.000 10.236 - 10.45 51.08 2006 0.000 0.000 0.000 0.000 0.000 0.000 10.195 0.000 0.000 0.000 0.001 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.064 0.000 0.192 0.000 0.000 10.453 - 10.45 51.08 2007 0.000 0.000 0.000 0.000 0.000 0.000 10.408 0.000 0.000 0.000 0.001 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.064 0.000 0.128 0.000 0.000 10.602 - 10.45 51.08 2008 0.000 0.000 0.000 0.000 0.000 0.000 10.604 0.000 0.000 0.000 0.001 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.064 0.000 0.128 0.000 0.000 10.798 - 10.45 51.08 2009 0.000 0.000 0.000 0.000 0.000 0.000 10.793 0.000 0.000 0.000 0.001 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.064 0.000 0.128 0.000 0.000 10.987 - 10.45 51.08 2010 0.000 0.000 0.000 0.000 0.000 0.000 10.975 0.000 0.000 0.000 0.001 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.064 0.000 0.128 0.000 0.000 11.169 - 10.45 51.08 2011 0.000 0.000 0.000 0.000 0.000 0.000 11.218 0.000 0.000 0.000 0.001 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.064 0.000 0.129 0.000 0.000 11.412 - 10.45 51.08 2012 0.000 0.000 0.000 0.000 0.000 0.000 11.404 0.000 0.000 0.000 0.001 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.064 0.000 0.129 0.000 0.000 11.598 diff --git a/rLPJGUESS/inst/extdata/outputsForTests/run_iffire/outDirectory/cpool.out b/rLPJGUESS/inst/extdata/outputsForTests/run_iffire/outDirectory/cpool.out deleted file mode 100644 index 6ed2bcd..0000000 --- a/rLPJGUESS/inst/extdata/outputsForTests/run_iffire/outDirectory/cpool.out +++ /dev/null @@ -1,63 +0,0 @@ - Lon Lat Year VegC LitterC SoilC Total - 10.45 51.08 1951 10.525 7.908 13.095 31.528 - 10.45 51.08 1952 10.783 7.657 13.101 31.542 - 10.45 51.08 1953 11.082 7.367 13.094 31.543 - 10.45 51.08 1954 10.110 8.378 13.096 31.585 - 10.45 51.08 1955 10.248 8.259 13.114 31.621 - 10.45 51.08 1956 10.393 8.162 13.128 31.684 - 10.45 51.08 1957 10.670 7.923 13.135 31.727 - 10.45 51.08 1958 8.298 10.314 13.139 31.751 - 10.45 51.08 1959 8.580 9.968 13.159 31.706 - 10.45 51.08 1960 8.825 9.707 13.175 31.706 - 10.45 51.08 1961 9.039 9.430 13.186 31.655 - 10.45 51.08 1962 9.260 9.213 13.199 31.671 - 10.45 51.08 1963 9.478 9.036 13.213 31.728 - 10.45 51.08 1964 9.757 8.754 13.219 31.730 - 10.45 51.08 1965 6.947 11.622 13.232 31.802 - 10.45 51.08 1966 7.234 11.295 13.271 31.799 - 10.45 51.08 1967 7.446 10.992 13.294 31.732 - 10.45 51.08 1968 7.702 10.682 13.315 31.699 - 10.45 51.08 1969 7.878 10.458 13.335 31.671 - 10.45 51.08 1970 8.098 10.207 13.356 31.660 - 10.45 51.08 1971 8.341 9.879 13.367 31.587 - 10.45 51.08 1972 8.561 9.691 13.386 31.638 - 10.45 51.08 1973 8.763 9.406 13.396 31.564 - 10.45 51.08 1974 8.875 9.307 13.408 31.590 - 10.45 51.08 1975 9.059 9.027 13.412 31.497 - 10.45 51.08 1976 9.218 8.800 13.409 31.427 - 10.45 51.08 1977 9.353 8.693 13.420 31.465 - 10.45 51.08 1978 9.544 8.496 13.429 31.470 - 10.45 51.08 1979 9.708 8.294 13.433 31.435 - 10.45 51.08 1980 7.910 10.065 13.434 31.410 - 10.45 51.08 1981 8.136 9.817 13.450 31.403 - 10.45 51.08 1982 8.205 9.564 13.444 31.214 - 10.45 51.08 1983 8.380 9.328 13.443 31.151 - 10.45 51.08 1984 8.510 9.175 13.455 31.141 - 10.45 51.08 1985 8.746 8.916 13.457 31.119 - 10.45 51.08 1986 8.953 8.700 13.458 31.111 - 10.45 51.08 1987 9.146 8.550 13.468 31.164 - 10.45 51.08 1988 9.356 8.277 13.458 31.092 - 10.45 51.08 1989 9.619 8.019 13.443 31.081 - 10.45 51.08 1990 9.850 7.837 13.431 31.118 - 10.45 51.08 1991 10.015 7.659 13.417 31.092 - 10.45 51.08 1992 10.174 7.451 13.407 31.032 - 10.45 51.08 1993 10.335 7.353 13.405 31.093 - 10.45 51.08 1994 10.518 7.160 13.394 31.072 - 10.45 51.08 1995 10.690 7.001 13.389 31.080 - 10.45 51.08 1996 10.851 6.894 13.394 31.140 - 10.45 51.08 1997 11.048 6.704 13.383 31.135 - 10.45 51.08 1998 8.863 8.922 13.371 31.156 - 10.45 51.08 1999 9.092 8.673 13.369 31.135 - 10.45 51.08 2000 9.227 8.477 13.364 31.068 - 10.45 51.08 2001 9.432 8.252 13.361 31.045 - 10.45 51.08 2002 9.593 8.064 13.363 31.020 - 10.45 51.08 2003 9.796 7.797 13.347 30.940 - 10.45 51.08 2004 9.993 7.656 13.338 30.987 - 10.45 51.08 2005 10.236 7.465 13.331 31.032 - 10.45 51.08 2006 10.453 7.264 13.321 31.038 - 10.45 51.08 2007 10.602 7.160 13.315 31.078 - 10.45 51.08 2008 10.798 6.954 13.301 31.053 - 10.45 51.08 2009 10.987 6.781 13.291 31.058 - 10.45 51.08 2010 11.169 6.648 13.289 31.106 - 10.45 51.08 2011 11.412 6.455 13.273 31.140 - 10.45 51.08 2012 11.598 6.290 13.258 31.146 diff --git a/rLPJGUESS/inst/extdata/outputsForTests/run_iffire/outDirectory/cton_leaf.out b/rLPJGUESS/inst/extdata/outputsForTests/run_iffire/outDirectory/cton_leaf.out deleted file mode 100644 index cf15c5b..0000000 --- a/rLPJGUESS/inst/extdata/outputsForTests/run_iffire/outDirectory/cton_leaf.out +++ /dev/null @@ -1,63 +0,0 @@ - Lon Lat Year Abi_alb BES Bet_pen Bet_pub Car_bet Cor_ave Fag_syl Fra_exc Jun_oxy MRS Pic_abi Pic_sit Pin_syl Pin_hal Pop_tre Que_coc Que_ile Que_pub Que_rob Til_cor Ulm_gla C3_gr C4_gr Total - 10.45 51.08 1951 0.0 0.0 0.0 23.6 23.6 0.0 23.6 23.6 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 23.6 23.6 23.6 0.0 0.0 23.6 - 10.45 51.08 1952 0.0 0.0 0.0 23.6 23.6 0.0 23.6 23.6 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 23.6 23.6 23.6 0.0 0.0 23.6 - 10.45 51.08 1953 0.0 0.0 0.0 23.6 23.6 0.0 23.6 23.6 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 23.6 23.6 23.6 0.0 0.0 23.6 - 10.45 51.08 1954 0.0 0.0 0.0 23.6 23.6 0.0 23.6 23.6 0.0 0.0 56.4 0.0 0.0 0.0 0.0 0.0 0.0 0.0 23.6 23.6 23.6 0.0 0.0 23.6 - 10.45 51.08 1955 0.0 0.0 0.0 23.6 23.6 0.0 23.6 23.6 0.0 0.0 56.4 0.0 0.0 0.0 0.0 0.0 0.0 0.0 23.6 23.6 23.6 0.0 0.0 23.6 - 10.45 51.08 1956 0.0 0.0 0.0 23.6 23.6 0.0 23.6 23.6 0.0 0.0 56.4 0.0 0.0 0.0 0.0 0.0 0.0 0.0 23.6 23.6 23.6 0.0 0.0 23.6 - 10.45 51.08 1957 0.0 0.0 0.0 23.6 23.6 0.0 23.6 23.6 0.0 0.0 56.4 0.0 0.0 0.0 0.0 0.0 0.0 0.0 23.6 23.6 23.6 0.0 0.0 23.6 - 10.45 51.08 1958 0.0 0.0 0.0 23.6 23.6 0.0 23.6 23.6 0.0 0.0 56.4 0.0 0.0 0.0 0.0 0.0 0.0 0.0 23.6 23.6 23.6 0.0 0.0 23.6 - 10.45 51.08 1959 0.0 0.0 0.0 23.6 23.6 0.0 23.6 23.6 0.0 0.0 56.4 0.0 0.0 0.0 0.0 0.0 0.0 0.0 23.6 23.6 23.6 0.0 0.0 23.6 - 10.45 51.08 1960 0.0 0.0 0.0 23.6 23.6 0.0 23.6 23.6 0.0 0.0 56.4 0.0 0.0 0.0 0.0 0.0 0.0 0.0 23.6 23.6 23.6 0.0 0.0 23.6 - 10.45 51.08 1961 0.0 0.0 0.0 23.6 23.6 0.0 23.6 23.6 0.0 0.0 56.4 0.0 0.0 0.0 0.0 0.0 0.0 0.0 23.6 23.6 23.6 0.0 0.0 23.6 - 10.45 51.08 1962 0.0 0.0 0.0 23.6 23.6 0.0 23.6 23.6 0.0 0.0 56.4 0.0 0.0 0.0 0.0 0.0 0.0 0.0 23.6 23.6 23.6 0.0 0.0 23.6 - 10.45 51.08 1963 0.0 0.0 0.0 23.6 23.6 0.0 23.6 23.6 0.0 0.0 56.4 0.0 0.0 0.0 0.0 0.0 0.0 0.0 23.6 23.6 23.6 0.0 0.0 23.6 - 10.45 51.08 1964 0.0 0.0 0.0 23.6 23.6 0.0 23.6 23.6 0.0 0.0 56.4 0.0 0.0 0.0 0.0 0.0 0.0 0.0 23.6 23.6 23.6 0.0 0.0 23.6 - 10.45 51.08 1965 0.0 0.0 0.0 23.6 23.6 0.0 23.6 23.6 0.0 0.0 56.4 0.0 0.0 0.0 0.0 0.0 0.0 0.0 23.6 23.6 23.6 0.0 0.0 23.6 - 10.45 51.08 1966 0.0 0.0 0.0 23.6 23.6 0.0 23.6 23.6 0.0 0.0 56.4 0.0 0.0 0.0 0.0 0.0 0.0 0.0 23.6 23.6 23.6 0.0 0.0 23.6 - 10.45 51.08 1967 0.0 0.0 0.0 23.6 23.6 0.0 23.6 23.6 0.0 0.0 56.4 0.0 0.0 0.0 0.0 0.0 0.0 0.0 23.6 23.6 23.6 0.0 0.0 23.6 - 10.45 51.08 1968 0.0 0.0 0.0 23.6 23.6 0.0 23.6 23.6 0.0 0.0 56.4 0.0 0.0 0.0 0.0 0.0 0.0 0.0 23.6 23.6 23.6 0.0 0.0 23.6 - 10.45 51.08 1969 0.0 0.0 0.0 23.6 23.6 0.0 23.6 23.6 0.0 0.0 56.4 0.0 0.0 0.0 0.0 0.0 0.0 0.0 23.6 23.6 23.6 0.0 0.0 23.6 - 10.45 51.08 1970 0.0 0.0 0.0 23.6 23.6 0.0 23.6 23.6 0.0 0.0 56.4 0.0 0.0 0.0 0.0 0.0 0.0 0.0 23.6 23.6 23.6 0.0 0.0 23.6 - 10.45 51.08 1971 0.0 0.0 0.0 23.6 23.6 0.0 23.6 23.6 0.0 0.0 56.4 0.0 0.0 0.0 0.0 0.0 0.0 0.0 23.6 23.6 23.6 0.0 0.0 23.6 - 10.45 51.08 1972 0.0 0.0 0.0 23.6 23.6 0.0 23.6 23.6 0.0 0.0 56.4 0.0 0.0 0.0 0.0 0.0 0.0 0.0 23.6 23.6 23.6 0.0 0.0 23.6 - 10.45 51.08 1973 0.0 0.0 0.0 23.6 23.6 0.0 23.6 23.6 0.0 0.0 56.4 0.0 0.0 0.0 0.0 0.0 0.0 0.0 23.6 23.6 23.6 0.0 0.0 23.6 - 10.45 51.08 1974 0.0 0.0 0.0 23.6 23.6 0.0 23.6 23.6 0.0 0.0 56.4 0.0 0.0 0.0 0.0 0.0 0.0 0.0 23.6 23.6 23.6 0.0 0.0 23.6 - 10.45 51.08 1975 0.0 0.0 0.0 23.6 23.6 0.0 23.6 23.6 0.0 0.0 56.4 0.0 0.0 0.0 0.0 0.0 0.0 0.0 23.6 23.6 23.6 0.0 0.0 23.6 - 10.45 51.08 1976 0.0 0.0 0.0 23.6 23.6 0.0 23.6 23.6 0.0 0.0 56.4 0.0 0.0 0.0 0.0 0.0 0.0 0.0 23.6 23.6 23.6 0.0 0.0 23.6 - 10.45 51.08 1977 0.0 0.0 0.0 23.6 23.6 0.0 23.6 23.6 0.0 0.0 56.4 0.0 0.0 0.0 0.0 0.0 0.0 0.0 23.6 23.6 23.6 0.0 0.0 23.6 - 10.45 51.08 1978 0.0 0.0 0.0 23.6 23.6 0.0 23.6 23.6 0.0 0.0 56.4 0.0 0.0 0.0 0.0 0.0 0.0 0.0 23.6 23.6 23.6 0.0 0.0 23.6 - 10.45 51.08 1979 0.0 0.0 0.0 23.6 23.6 0.0 23.6 23.6 0.0 0.0 56.4 0.0 0.0 0.0 0.0 0.0 0.0 0.0 23.6 23.6 23.6 0.0 0.0 23.6 - 10.45 51.08 1980 0.0 0.0 0.0 23.6 23.6 0.0 23.6 23.6 0.0 0.0 56.4 0.0 0.0 0.0 0.0 0.0 0.0 0.0 23.6 23.6 23.6 0.0 0.0 23.6 - 10.45 51.08 1981 0.0 0.0 0.0 23.6 23.6 0.0 23.6 23.6 0.0 0.0 56.4 0.0 0.0 0.0 0.0 0.0 0.0 0.0 23.6 23.6 23.6 0.0 0.0 23.6 - 10.45 51.08 1982 0.0 0.0 0.0 23.6 23.6 0.0 23.6 23.6 0.0 0.0 56.4 0.0 0.0 0.0 0.0 0.0 0.0 0.0 23.6 23.6 23.6 0.0 0.0 23.6 - 10.45 51.08 1983 0.0 0.0 0.0 23.6 23.6 0.0 23.6 23.6 0.0 0.0 56.4 0.0 0.0 0.0 0.0 0.0 0.0 0.0 23.6 23.6 23.6 0.0 0.0 23.6 - 10.45 51.08 1984 0.0 0.0 0.0 23.6 23.6 0.0 23.6 23.6 0.0 0.0 56.4 0.0 0.0 0.0 0.0 0.0 0.0 0.0 23.6 0.0 23.6 0.0 0.0 23.6 - 10.45 51.08 1985 0.0 0.0 0.0 23.6 23.6 0.0 23.6 23.6 0.0 0.0 56.4 0.0 0.0 0.0 0.0 0.0 0.0 0.0 23.6 0.0 23.6 0.0 0.0 23.6 - 10.45 51.08 1986 0.0 0.0 0.0 23.6 23.6 0.0 23.6 23.6 0.0 0.0 56.4 0.0 0.0 0.0 0.0 0.0 0.0 0.0 23.6 0.0 23.6 0.0 0.0 23.6 - 10.45 51.08 1987 0.0 0.0 0.0 23.6 23.6 0.0 23.6 23.6 0.0 0.0 56.4 0.0 0.0 0.0 0.0 0.0 0.0 0.0 23.6 0.0 23.6 0.0 0.0 23.6 - 10.45 51.08 1988 0.0 0.0 0.0 23.6 23.6 0.0 23.6 23.6 0.0 0.0 56.4 0.0 0.0 0.0 0.0 0.0 0.0 0.0 23.6 0.0 23.6 0.0 0.0 23.6 - 10.45 51.08 1989 0.0 0.0 0.0 23.6 23.6 0.0 23.6 23.6 0.0 0.0 56.4 0.0 0.0 0.0 0.0 0.0 0.0 0.0 23.6 0.0 23.6 0.0 0.0 23.7 - 10.45 51.08 1990 0.0 0.0 0.0 23.6 23.6 0.0 23.6 23.6 0.0 0.0 56.4 0.0 0.0 0.0 0.0 0.0 0.0 0.0 23.6 0.0 23.6 0.0 0.0 23.7 - 10.45 51.08 1991 0.0 0.0 0.0 23.6 0.0 0.0 23.6 23.6 0.0 0.0 56.4 0.0 0.0 0.0 0.0 0.0 0.0 0.0 23.6 0.0 23.6 0.0 0.0 23.6 - 10.45 51.08 1992 0.0 0.0 0.0 23.6 0.0 0.0 23.6 23.6 0.0 0.0 56.4 0.0 0.0 0.0 0.0 0.0 0.0 0.0 23.6 0.0 23.6 0.0 0.0 23.7 - 10.45 51.08 1993 0.0 0.0 0.0 23.6 0.0 0.0 23.6 23.6 0.0 0.0 56.4 0.0 0.0 0.0 0.0 0.0 0.0 0.0 23.6 0.0 23.6 0.0 0.0 23.6 - 10.45 51.08 1994 0.0 0.0 0.0 23.6 0.0 0.0 23.6 23.6 0.0 0.0 56.4 0.0 0.0 0.0 0.0 0.0 0.0 0.0 23.6 0.0 23.6 0.0 0.0 23.6 - 10.45 51.08 1995 0.0 0.0 0.0 23.6 0.0 0.0 23.6 23.6 0.0 0.0 56.4 0.0 0.0 0.0 0.0 0.0 0.0 0.0 23.6 0.0 23.6 0.0 0.0 23.6 - 10.45 51.08 1996 0.0 0.0 0.0 23.6 0.0 0.0 23.6 23.6 0.0 0.0 56.4 0.0 0.0 0.0 0.0 0.0 0.0 0.0 23.6 0.0 23.6 0.0 0.0 23.6 - 10.45 51.08 1997 0.0 0.0 0.0 23.6 0.0 0.0 23.6 23.6 0.0 0.0 56.4 0.0 0.0 0.0 0.0 0.0 0.0 0.0 23.6 0.0 23.6 0.0 0.0 23.6 - 10.45 51.08 1998 0.0 0.0 0.0 0.0 0.0 0.0 23.6 23.6 0.0 0.0 56.4 0.0 0.0 0.0 0.0 0.0 0.0 0.0 23.6 0.0 23.6 0.0 0.0 23.6 - 10.45 51.08 1999 0.0 0.0 0.0 0.0 0.0 0.0 23.6 23.6 0.0 0.0 56.4 0.0 0.0 0.0 0.0 0.0 0.0 0.0 23.6 0.0 23.6 0.0 0.0 23.6 - 10.45 51.08 2000 0.0 0.0 0.0 0.0 0.0 0.0 23.6 23.6 0.0 0.0 56.4 0.0 0.0 0.0 0.0 0.0 0.0 0.0 23.6 0.0 23.6 0.0 0.0 23.6 - 10.45 51.08 2001 0.0 0.0 0.0 0.0 0.0 0.0 23.6 23.6 0.0 0.0 56.4 0.0 0.0 0.0 0.0 0.0 0.0 0.0 23.6 0.0 23.6 0.0 0.0 23.6 - 10.45 51.08 2002 0.0 0.0 0.0 0.0 0.0 0.0 23.6 23.6 0.0 0.0 56.4 0.0 0.0 0.0 0.0 0.0 0.0 0.0 23.6 0.0 23.6 0.0 0.0 23.6 - 10.45 51.08 2003 0.0 0.0 0.0 0.0 0.0 0.0 23.6 23.6 0.0 0.0 56.4 0.0 0.0 0.0 0.0 0.0 0.0 0.0 23.6 0.0 23.6 0.0 0.0 23.6 - 10.45 51.08 2004 0.0 0.0 0.0 0.0 0.0 0.0 23.6 0.0 0.0 0.0 56.4 0.0 0.0 0.0 0.0 0.0 0.0 0.0 23.6 0.0 23.6 0.0 0.0 23.6 - 10.45 51.08 2005 0.0 0.0 0.0 0.0 0.0 0.0 23.6 0.0 0.0 0.0 56.4 0.0 0.0 0.0 0.0 0.0 0.0 0.0 23.6 0.0 23.6 0.0 0.0 23.6 - 10.45 51.08 2006 0.0 0.0 0.0 0.0 0.0 0.0 23.6 0.0 0.0 0.0 56.4 0.0 0.0 0.0 0.0 0.0 0.0 0.0 23.6 0.0 23.6 0.0 0.0 23.6 - 10.45 51.08 2007 0.0 0.0 0.0 0.0 0.0 0.0 23.6 0.0 0.0 0.0 56.4 0.0 0.0 0.0 0.0 0.0 0.0 0.0 23.6 0.0 23.6 0.0 0.0 23.6 - 10.45 51.08 2008 0.0 0.0 0.0 0.0 0.0 0.0 23.6 0.0 0.0 0.0 56.4 0.0 0.0 0.0 0.0 0.0 0.0 0.0 23.6 0.0 23.6 0.0 0.0 23.6 - 10.45 51.08 2009 0.0 0.0 0.0 0.0 0.0 0.0 23.6 0.0 0.0 0.0 56.4 0.0 0.0 0.0 0.0 0.0 0.0 0.0 23.6 0.0 23.6 0.0 0.0 23.6 - 10.45 51.08 2010 0.0 0.0 0.0 0.0 0.0 0.0 23.6 0.0 0.0 0.0 56.4 0.0 0.0 0.0 0.0 0.0 0.0 0.0 23.6 0.0 23.6 0.0 0.0 23.6 - 10.45 51.08 2011 0.0 0.0 0.0 0.0 0.0 0.0 23.6 0.0 0.0 0.0 56.4 0.0 0.0 0.0 0.0 0.0 0.0 0.0 23.6 0.0 23.6 0.0 0.0 23.6 - 10.45 51.08 2012 0.0 0.0 0.0 0.0 0.0 0.0 23.6 0.0 0.0 0.0 56.4 0.0 0.0 0.0 0.0 0.0 0.0 0.0 23.6 0.0 23.6 0.0 0.0 23.6 diff --git a/rLPJGUESS/inst/extdata/outputsForTests/run_iffire/outDirectory/dens.out b/rLPJGUESS/inst/extdata/outputsForTests/run_iffire/outDirectory/dens.out deleted file mode 100644 index 959021d..0000000 --- a/rLPJGUESS/inst/extdata/outputsForTests/run_iffire/outDirectory/dens.out +++ /dev/null @@ -1,63 +0,0 @@ - Lon Lat Year Abi_alb BES Bet_pen Bet_pub Car_bet Cor_ave Fag_syl Fra_exc Jun_oxy MRS Pic_abi Pic_sit Pin_syl Pin_hal Pop_tre Que_coc Que_ile Que_pub Que_rob Til_cor Ulm_gla C3_gr C4_gr Total - 10.45 51.08 1951 0.0000 0.0000 0.0000 0.0070 0.0040 0.0000 0.0080 0.0070 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0040 0.0020 0.0110 0.0000 0.0000 0.0430 - 10.45 51.08 1952 0.0000 0.0000 0.0000 0.0070 0.0040 0.0000 0.0080 0.0070 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0040 0.0020 0.0110 0.0000 0.0000 0.0430 - 10.45 51.08 1953 0.0000 0.0000 0.0000 0.0070 0.0040 0.0000 0.0080 0.0070 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0040 0.0020 0.0110 0.0000 0.0000 0.0430 - 10.45 51.08 1954 0.0000 0.0000 0.0000 0.0060 0.0040 0.0000 0.0080 0.0070 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0040 0.0020 0.0110 0.0000 0.0000 0.0420 - 10.45 51.08 1955 0.0000 0.0000 0.0000 0.0060 0.0040 0.0000 0.0080 0.0060 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0040 0.0020 0.0100 0.0000 0.0000 0.0400 - 10.45 51.08 1956 0.0000 0.0000 0.0000 0.0060 0.0040 0.0000 0.0080 0.0050 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0040 0.0020 0.0090 0.0000 0.0000 0.0380 - 10.45 51.08 1957 0.0000 0.0000 0.0000 0.0060 0.0040 0.0000 0.0080 0.0050 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0040 0.0020 0.0090 0.0000 0.0000 0.0380 - 10.45 51.08 1958 0.0000 0.0000 0.0000 0.0040 0.0040 0.0000 0.0080 0.0050 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0040 0.0020 0.0090 0.0000 0.0000 0.0360 - 10.45 51.08 1959 0.0000 0.0000 0.0000 0.0040 0.0040 0.0000 0.0080 0.0050 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0040 0.0020 0.0080 0.0000 0.0000 0.0350 - 10.45 51.08 1960 0.0000 0.0000 0.0000 0.0040 0.0040 0.0000 0.0080 0.0050 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0040 0.0010 0.0080 0.0000 0.0000 0.0340 - 10.45 51.08 1961 0.0000 0.0000 0.0000 0.0040 0.0040 0.0000 0.0080 0.0050 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0030 0.0010 0.0080 0.0000 0.0000 0.0330 - 10.45 51.08 1962 0.0000 0.0000 0.0000 0.0040 0.0030 0.0000 0.0080 0.0050 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0030 0.0010 0.0080 0.0000 0.0000 0.0320 - 10.45 51.08 1963 0.0000 0.0000 0.0000 0.0040 0.0030 0.0000 0.0080 0.0050 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0030 0.0010 0.0070 0.0000 0.0000 0.0310 - 10.45 51.08 1964 0.0000 0.0000 0.0000 0.0040 0.0030 0.0000 0.0080 0.0050 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0030 0.0010 0.0070 0.0000 0.0000 0.0310 - 10.45 51.08 1965 0.0000 0.0000 0.0000 0.0020 0.0030 0.0000 0.0080 0.0050 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0030 0.0010 0.0070 0.0000 0.0000 0.0290 - 10.45 51.08 1966 0.0000 0.0000 0.0000 0.0020 0.0030 0.0000 0.0080 0.0050 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0030 0.0010 0.0070 0.0000 0.0000 0.0290 - 10.45 51.08 1967 0.0000 0.0000 0.0000 0.0020 0.0020 0.0000 0.0080 0.0050 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0030 0.0010 0.0070 0.0000 0.0000 0.0280 - 10.45 51.08 1968 0.0000 0.0000 0.0000 0.0020 0.0020 0.0000 0.0080 0.0050 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0030 0.0010 0.0070 0.0000 0.0000 0.0280 - 10.45 51.08 1969 0.0000 0.0000 0.0000 0.0020 0.0020 0.0000 0.0080 0.0040 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0030 0.0010 0.0070 0.0000 0.0000 0.0270 - 10.45 51.08 1970 0.0000 0.0000 0.0000 0.0020 0.0020 0.0000 0.0080 0.0040 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0030 0.0010 0.0070 0.0000 0.0000 0.0270 - 10.45 51.08 1971 0.0000 0.0000 0.0000 0.0020 0.0020 0.0000 0.0080 0.0040 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0030 0.0010 0.0070 0.0000 0.0000 0.0270 - 10.45 51.08 1972 0.0000 0.0000 0.0000 0.0020 0.0020 0.0000 0.0080 0.0040 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0030 0.0010 0.0070 0.0000 0.0000 0.0270 - 10.45 51.08 1973 0.0000 0.0000 0.0000 0.0020 0.0020 0.0000 0.0080 0.0040 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0030 0.0010 0.0070 0.0000 0.0000 0.0270 - 10.45 51.08 1974 0.0000 0.0000 0.0000 0.0020 0.0020 0.0000 0.0080 0.0030 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0030 0.0010 0.0060 0.0000 0.0000 0.0250 - 10.45 51.08 1975 0.0000 0.0000 0.0000 0.0020 0.0020 0.0000 0.0080 0.0030 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0030 0.0010 0.0060 0.0000 0.0000 0.0250 - 10.45 51.08 1976 0.0000 0.0000 0.0000 0.0020 0.0020 0.0000 0.0080 0.0020 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0030 0.0010 0.0060 0.0000 0.0000 0.0240 - 10.45 51.08 1977 0.0000 0.0000 0.0000 0.0020 0.0020 0.0000 0.0080 0.0020 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0030 0.0010 0.0050 0.0000 0.0000 0.0230 - 10.45 51.08 1978 0.0000 0.0000 0.0000 0.0020 0.0020 0.0000 0.0080 0.0020 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0030 0.0010 0.0050 0.0000 0.0000 0.0230 - 10.45 51.08 1979 0.0000 0.0000 0.0000 0.0020 0.0020 0.0000 0.0080 0.0020 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0030 0.0010 0.0050 0.0000 0.0000 0.0230 - 10.45 51.08 1980 0.0000 0.0000 0.0000 0.0010 0.0020 0.0000 0.0080 0.0020 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0030 0.0010 0.0050 0.0000 0.0000 0.0220 - 10.45 51.08 1981 0.0000 0.0000 0.0000 0.0010 0.0020 0.0000 0.0080 0.0020 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0030 0.0010 0.0050 0.0000 0.0000 0.0220 - 10.45 51.08 1982 0.0000 0.0000 0.0000 0.0010 0.0020 0.0000 0.0080 0.0010 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0020 0.0010 0.0050 0.0000 0.0000 0.0200 - 10.45 51.08 1983 0.0000 0.0000 0.0000 0.0010 0.0020 0.0000 0.0080 0.0010 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0010 0.0010 0.0050 0.0000 0.0000 0.0190 - 10.45 51.08 1984 0.0000 0.0000 0.0000 0.0010 0.0020 0.0000 0.0080 0.0010 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0010 0.0000 0.0050 0.0000 0.0000 0.0180 - 10.45 51.08 1985 0.0000 0.0000 0.0000 0.0010 0.0020 0.0000 0.0080 0.0010 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0010 0.0000 0.0050 0.0000 0.0000 0.0180 - 10.45 51.08 1986 0.0000 0.0000 0.0000 0.0010 0.0020 0.0000 0.0080 0.0010 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0010 0.0000 0.0050 0.0000 0.0000 0.0180 - 10.45 51.08 1987 0.0000 0.0000 0.0000 0.0010 0.0020 0.0000 0.0080 0.0010 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0010 0.0000 0.0050 0.0000 0.0000 0.0180 - 10.45 51.08 1988 0.0000 0.0000 0.0000 0.0010 0.0020 0.0000 0.0080 0.0010 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0010 0.0000 0.0050 0.0000 0.0000 0.0180 - 10.45 51.08 1989 0.0000 0.0000 0.0000 0.0010 0.0020 0.0000 0.0080 0.0010 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0010 0.0000 0.0050 0.0000 0.0000 0.0180 - 10.45 51.08 1990 0.0000 0.0000 0.0000 0.0010 0.0010 0.0000 0.0080 0.0010 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0010 0.0000 0.0050 0.0000 0.0000 0.0170 - 10.45 51.08 1991 0.0000 0.0000 0.0000 0.0010 0.0000 0.0000 0.0080 0.0010 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0010 0.0000 0.0050 0.0000 0.0000 0.0160 - 10.45 51.08 1992 0.0000 0.0000 0.0000 0.0010 0.0000 0.0000 0.0080 0.0010 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0010 0.0000 0.0050 0.0000 0.0000 0.0160 - 10.45 51.08 1993 0.0000 0.0000 0.0000 0.0010 0.0000 0.0000 0.0080 0.0010 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0010 0.0000 0.0040 0.0000 0.0000 0.0150 - 10.45 51.08 1994 0.0000 0.0000 0.0000 0.0010 0.0000 0.0000 0.0080 0.0010 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0010 0.0000 0.0040 0.0000 0.0000 0.0150 - 10.45 51.08 1995 0.0000 0.0000 0.0000 0.0010 0.0000 0.0000 0.0080 0.0010 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0010 0.0000 0.0040 0.0000 0.0000 0.0150 - 10.45 51.08 1996 0.0000 0.0000 0.0000 0.0010 0.0000 0.0000 0.0080 0.0010 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0010 0.0000 0.0040 0.0000 0.0000 0.0150 - 10.45 51.08 1997 0.0000 0.0000 0.0000 0.0010 0.0000 0.0000 0.0080 0.0010 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0010 0.0000 0.0040 0.0000 0.0000 0.0150 - 10.45 51.08 1998 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0080 0.0010 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0010 0.0000 0.0040 0.0000 0.0000 0.0140 - 10.45 51.08 1999 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0080 0.0010 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0010 0.0000 0.0040 0.0000 0.0000 0.0140 - 10.45 51.08 2000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0110 0.0010 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0010 0.0000 0.0030 0.0000 0.0000 0.0160 - 10.45 51.08 2001 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0110 0.0010 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0010 0.0000 0.0030 0.0000 0.0000 0.0160 - 10.45 51.08 2002 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0110 0.0010 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0010 0.0000 0.0030 0.0000 0.0000 0.0160 - 10.45 51.08 2003 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0110 0.0010 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0010 0.0000 0.0030 0.0000 0.0000 0.0160 - 10.45 51.08 2004 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0100 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0010 0.0000 0.0030 0.0000 0.0000 0.0140 - 10.45 51.08 2005 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0090 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0010 0.0000 0.0030 0.0000 0.0000 0.0130 - 10.45 51.08 2006 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0090 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0010 0.0000 0.0030 0.0000 0.0000 0.0130 - 10.45 51.08 2007 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0090 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0010 0.0000 0.0020 0.0000 0.0000 0.0120 - 10.45 51.08 2008 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0090 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0010 0.0000 0.0020 0.0000 0.0000 0.0120 - 10.45 51.08 2009 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0080 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0010 0.0000 0.0020 0.0000 0.0000 0.0110 - 10.45 51.08 2010 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0080 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0010 0.0000 0.0020 0.0000 0.0000 0.0110 - 10.45 51.08 2011 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0080 0.0000 0.0000 0.0000 0.0010 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0010 0.0000 0.0020 0.0000 0.0000 0.0120 - 10.45 51.08 2012 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0080 0.0000 0.0000 0.0000 0.0010 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0010 0.0000 0.0020 0.0000 0.0000 0.0120 diff --git a/rLPJGUESS/inst/extdata/outputsForTests/run_iffire/outDirectory/firert.out b/rLPJGUESS/inst/extdata/outputsForTests/run_iffire/outDirectory/firert.out deleted file mode 100644 index b334390..0000000 --- a/rLPJGUESS/inst/extdata/outputsForTests/run_iffire/outDirectory/firert.out +++ /dev/null @@ -1,63 +0,0 @@ - Lon Lat Year FireRT - 10.45 51.08 1951 1000.0 - 10.45 51.08 1952 1000.0 - 10.45 51.08 1953 1000.0 - 10.45 51.08 1954 1000.0 - 10.45 51.08 1955 1000.0 - 10.45 51.08 1956 1000.0 - 10.45 51.08 1957 1000.0 - 10.45 51.08 1958 1000.0 - 10.45 51.08 1959 1000.0 - 10.45 51.08 1960 1000.0 - 10.45 51.08 1961 1000.0 - 10.45 51.08 1962 1000.0 - 10.45 51.08 1963 1000.0 - 10.45 51.08 1964 1000.0 - 10.45 51.08 1965 1000.0 - 10.45 51.08 1966 1000.0 - 10.45 51.08 1967 1000.0 - 10.45 51.08 1968 1000.0 - 10.45 51.08 1969 1000.0 - 10.45 51.08 1970 1000.0 - 10.45 51.08 1971 1000.0 - 10.45 51.08 1972 1000.0 - 10.45 51.08 1973 1000.0 - 10.45 51.08 1974 1000.0 - 10.45 51.08 1975 1000.0 - 10.45 51.08 1976 1000.0 - 10.45 51.08 1977 1000.0 - 10.45 51.08 1978 1000.0 - 10.45 51.08 1979 1000.0 - 10.45 51.08 1980 1000.0 - 10.45 51.08 1981 1000.0 - 10.45 51.08 1982 1000.0 - 10.45 51.08 1983 1000.0 - 10.45 51.08 1984 1000.0 - 10.45 51.08 1985 1000.0 - 10.45 51.08 1986 1000.0 - 10.45 51.08 1987 1000.0 - 10.45 51.08 1988 1000.0 - 10.45 51.08 1989 1000.0 - 10.45 51.08 1990 1000.0 - 10.45 51.08 1991 1000.0 - 10.45 51.08 1992 1000.0 - 10.45 51.08 1993 1000.0 - 10.45 51.08 1994 1000.0 - 10.45 51.08 1995 1000.0 - 10.45 51.08 1996 1000.0 - 10.45 51.08 1997 1000.0 - 10.45 51.08 1998 1000.0 - 10.45 51.08 1999 1000.0 - 10.45 51.08 2000 1000.0 - 10.45 51.08 2001 1000.0 - 10.45 51.08 2002 1000.0 - 10.45 51.08 2003 1000.0 - 10.45 51.08 2004 1000.0 - 10.45 51.08 2005 1000.0 - 10.45 51.08 2006 1000.0 - 10.45 51.08 2007 1000.0 - 10.45 51.08 2008 1000.0 - 10.45 51.08 2009 1000.0 - 10.45 51.08 2010 1000.0 - 10.45 51.08 2011 1000.0 - 10.45 51.08 2012 1000.0 diff --git a/rLPJGUESS/inst/extdata/outputsForTests/run_iffire/outDirectory/fpc.out b/rLPJGUESS/inst/extdata/outputsForTests/run_iffire/outDirectory/fpc.out deleted file mode 100644 index cf40372..0000000 --- a/rLPJGUESS/inst/extdata/outputsForTests/run_iffire/outDirectory/fpc.out +++ /dev/null @@ -1,63 +0,0 @@ - Lon Lat Year Abi_alb BES Bet_pen Bet_pub Car_bet Cor_ave Fag_syl Fra_exc Jun_oxy MRS Pic_abi Pic_sit Pin_syl Pin_hal Pop_tre Que_coc Que_ile Que_pub Que_rob Til_cor Ulm_gla C3_gr C4_gr Total - 10.45 51.08 1951 0.000 0.000 0.000 0.256 0.014 0.000 0.204 0.034 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.019 0.002 0.053 0.000 0.000 0.582 - 10.45 51.08 1952 0.000 0.000 0.000 0.257 0.014 0.000 0.211 0.035 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.020 0.002 0.054 0.000 0.000 0.593 - 10.45 51.08 1953 0.000 0.000 0.000 0.258 0.015 0.000 0.219 0.036 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.021 0.002 0.057 0.000 0.000 0.609 - 10.45 51.08 1954 0.000 0.000 0.000 0.221 0.015 0.000 0.225 0.037 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.021 0.002 0.058 0.000 0.000 0.578 - 10.45 51.08 1955 0.000 0.000 0.000 0.222 0.015 0.000 0.231 0.032 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.021 0.002 0.053 0.000 0.000 0.576 - 10.45 51.08 1956 0.000 0.000 0.000 0.222 0.015 0.000 0.238 0.027 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.022 0.002 0.049 0.000 0.000 0.575 - 10.45 51.08 1957 0.000 0.000 0.000 0.223 0.016 0.000 0.246 0.028 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.022 0.003 0.050 0.000 0.000 0.587 - 10.45 51.08 1958 0.000 0.000 0.000 0.149 0.016 0.000 0.252 0.028 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.022 0.003 0.050 0.000 0.000 0.520 - 10.45 51.08 1959 0.000 0.000 0.000 0.150 0.017 0.000 0.267 0.030 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.024 0.003 0.047 0.000 0.000 0.538 - 10.45 51.08 1960 0.000 0.000 0.000 0.151 0.017 0.000 0.278 0.030 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.024 0.001 0.048 0.000 0.000 0.550 - 10.45 51.08 1961 0.000 0.000 0.000 0.151 0.018 0.000 0.288 0.031 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.019 0.002 0.050 0.000 0.000 0.558 - 10.45 51.08 1962 0.000 0.000 0.000 0.152 0.014 0.000 0.291 0.032 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.019 0.002 0.050 0.000 0.000 0.559 - 10.45 51.08 1963 0.000 0.000 0.000 0.152 0.014 0.000 0.294 0.032 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.019 0.002 0.045 0.000 0.000 0.558 - 10.45 51.08 1964 0.000 0.000 0.000 0.152 0.014 0.000 0.297 0.032 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.019 0.002 0.045 0.000 0.000 0.561 - 10.45 51.08 1965 0.000 0.000 0.000 0.076 0.014 0.000 0.299 0.032 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.019 0.002 0.045 0.000 0.000 0.487 - 10.45 51.08 1966 0.000 0.000 0.000 0.076 0.015 0.000 0.302 0.034 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.020 0.002 0.047 0.000 0.000 0.496 - 10.45 51.08 1967 0.000 0.000 0.000 0.077 0.010 0.000 0.305 0.034 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.020 0.002 0.047 0.000 0.000 0.495 - 10.45 51.08 1968 0.000 0.000 0.000 0.077 0.010 0.000 0.307 0.034 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.021 0.002 0.048 0.000 0.000 0.499 - 10.45 51.08 1969 0.000 0.000 0.000 0.077 0.010 0.000 0.308 0.027 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.021 0.002 0.048 0.000 0.000 0.493 - 10.45 51.08 1970 0.000 0.000 0.000 0.077 0.010 0.000 0.309 0.027 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.020 0.002 0.047 0.000 0.000 0.492 - 10.45 51.08 1971 0.000 0.000 0.000 0.077 0.010 0.000 0.311 0.027 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.020 0.002 0.047 0.000 0.000 0.493 - 10.45 51.08 1972 0.000 0.000 0.000 0.077 0.009 0.000 0.311 0.026 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.020 0.002 0.046 0.000 0.000 0.492 - 10.45 51.08 1973 0.000 0.000 0.000 0.077 0.009 0.000 0.312 0.026 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.019 0.002 0.045 0.000 0.000 0.490 - 10.45 51.08 1974 0.000 0.000 0.000 0.077 0.009 0.000 0.312 0.019 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.019 0.002 0.039 0.000 0.000 0.478 - 10.45 51.08 1975 0.000 0.000 0.000 0.077 0.009 0.000 0.313 0.019 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.019 0.002 0.038 0.000 0.000 0.475 - 10.45 51.08 1976 0.000 0.000 0.000 0.077 0.009 0.000 0.313 0.012 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.018 0.002 0.036 0.000 0.000 0.466 - 10.45 51.08 1977 0.000 0.000 0.000 0.076 0.008 0.000 0.313 0.012 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.018 0.001 0.029 0.000 0.000 0.459 - 10.45 51.08 1978 0.000 0.000 0.000 0.076 0.008 0.000 0.314 0.012 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.017 0.001 0.029 0.000 0.000 0.457 - 10.45 51.08 1979 0.000 0.000 0.000 0.076 0.008 0.000 0.314 0.011 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.017 0.001 0.028 0.000 0.000 0.456 - 10.45 51.08 1980 0.000 0.000 0.000 0.038 0.008 0.000 0.314 0.011 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.016 0.001 0.027 0.000 0.000 0.415 - 10.45 51.08 1981 0.000 0.000 0.000 0.038 0.008 0.000 0.315 0.011 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.016 0.001 0.027 0.000 0.000 0.417 - 10.45 51.08 1982 0.000 0.000 0.000 0.038 0.007 0.000 0.315 0.005 0.000 0.000 0.001 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.011 0.001 0.027 0.000 0.000 0.404 - 10.45 51.08 1983 0.000 0.000 0.000 0.038 0.007 0.000 0.316 0.005 0.000 0.000 0.001 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.005 0.001 0.026 0.000 0.000 0.399 - 10.45 51.08 1984 0.000 0.000 0.000 0.038 0.007 0.000 0.316 0.005 0.000 0.000 0.001 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.005 0.000 0.025 0.000 0.000 0.396 - 10.45 51.08 1985 0.000 0.000 0.000 0.038 0.007 0.000 0.316 0.005 0.000 0.000 0.001 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.005 0.000 0.025 0.000 0.000 0.396 - 10.45 51.08 1986 0.000 0.000 0.000 0.038 0.007 0.000 0.317 0.005 0.000 0.000 0.001 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.005 0.000 0.024 0.000 0.000 0.395 - 10.45 51.08 1987 0.000 0.000 0.000 0.037 0.006 0.000 0.317 0.005 0.000 0.000 0.001 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.005 0.000 0.023 0.000 0.000 0.394 - 10.45 51.08 1988 0.000 0.000 0.000 0.037 0.006 0.000 0.317 0.005 0.000 0.000 0.001 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.005 0.000 0.023 0.000 0.000 0.393 - 10.45 51.08 1989 0.000 0.000 0.000 0.037 0.006 0.000 0.318 0.004 0.000 0.000 0.001 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.004 0.000 0.022 0.000 0.000 0.393 - 10.45 51.08 1990 0.000 0.000 0.000 0.037 0.003 0.000 0.318 0.004 0.000 0.000 0.001 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.004 0.000 0.022 0.000 0.000 0.391 - 10.45 51.08 1991 0.000 0.000 0.000 0.037 0.000 0.000 0.318 0.004 0.000 0.000 0.001 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.004 0.000 0.022 0.000 0.000 0.387 - 10.45 51.08 1992 0.000 0.000 0.000 0.037 0.000 0.000 0.318 0.004 0.000 0.000 0.001 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.004 0.000 0.020 0.000 0.000 0.384 - 10.45 51.08 1993 0.000 0.000 0.000 0.037 0.000 0.000 0.319 0.004 0.000 0.000 0.001 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.004 0.000 0.016 0.000 0.000 0.379 - 10.45 51.08 1994 0.000 0.000 0.000 0.037 0.000 0.000 0.319 0.004 0.000 0.000 0.001 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.004 0.000 0.015 0.000 0.000 0.378 - 10.45 51.08 1995 0.000 0.000 0.000 0.036 0.000 0.000 0.318 0.003 0.000 0.000 0.001 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.003 0.000 0.014 0.000 0.000 0.376 - 10.45 51.08 1996 0.000 0.000 0.000 0.036 0.000 0.000 0.318 0.003 0.000 0.000 0.001 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.003 0.000 0.013 0.000 0.000 0.374 - 10.45 51.08 1997 0.000 0.000 0.000 0.036 0.000 0.000 0.318 0.003 0.000 0.000 0.001 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.003 0.000 0.012 0.000 0.000 0.373 - 10.45 51.08 1998 0.000 0.000 0.000 0.000 0.000 0.000 0.318 0.003 0.000 0.000 0.001 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.003 0.000 0.012 0.000 0.000 0.337 - 10.45 51.08 1999 0.000 0.000 0.000 0.000 0.000 0.000 0.319 0.003 0.000 0.000 0.001 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.003 0.000 0.012 0.000 0.000 0.337 - 10.45 51.08 2000 0.000 0.000 0.000 0.000 0.000 0.000 0.319 0.003 0.000 0.000 0.001 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.003 0.000 0.008 0.000 0.000 0.333 - 10.45 51.08 2001 0.000 0.000 0.000 0.000 0.000 0.000 0.319 0.003 0.000 0.000 0.001 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.003 0.000 0.008 0.000 0.000 0.333 - 10.45 51.08 2002 0.000 0.000 0.000 0.000 0.000 0.000 0.319 0.003 0.000 0.000 0.001 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.003 0.000 0.008 0.000 0.000 0.332 - 10.45 51.08 2003 0.000 0.000 0.000 0.000 0.000 0.000 0.319 0.002 0.000 0.000 0.001 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.002 0.000 0.007 0.000 0.000 0.331 - 10.45 51.08 2004 0.000 0.000 0.000 0.000 0.000 0.000 0.319 0.000 0.000 0.000 0.001 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.002 0.000 0.007 0.000 0.000 0.329 - 10.45 51.08 2005 0.000 0.000 0.000 0.000 0.000 0.000 0.319 0.000 0.000 0.000 0.001 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.002 0.000 0.006 0.000 0.000 0.328 - 10.45 51.08 2006 0.000 0.000 0.000 0.000 0.000 0.000 0.319 0.000 0.000 0.000 0.001 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.002 0.000 0.006 0.000 0.000 0.327 - 10.45 51.08 2007 0.000 0.000 0.000 0.000 0.000 0.000 0.319 0.000 0.000 0.000 0.001 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.002 0.000 0.004 0.000 0.000 0.325 - 10.45 51.08 2008 0.000 0.000 0.000 0.000 0.000 0.000 0.319 0.000 0.000 0.000 0.001 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.002 0.000 0.004 0.000 0.000 0.325 - 10.45 51.08 2009 0.000 0.000 0.000 0.000 0.000 0.000 0.318 0.000 0.000 0.000 0.001 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.002 0.000 0.003 0.000 0.000 0.324 - 10.45 51.08 2010 0.000 0.000 0.000 0.000 0.000 0.000 0.318 0.000 0.000 0.000 0.001 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.002 0.000 0.003 0.000 0.000 0.323 - 10.45 51.08 2011 0.000 0.000 0.000 0.000 0.000 0.000 0.318 0.000 0.000 0.000 0.001 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.002 0.000 0.003 0.000 0.000 0.323 - 10.45 51.08 2012 0.000 0.000 0.000 0.000 0.000 0.000 0.318 0.000 0.000 0.000 0.001 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.001 0.000 0.003 0.000 0.000 0.323 diff --git a/rLPJGUESS/inst/extdata/outputsForTests/run_iffire/outDirectory/lai.out b/rLPJGUESS/inst/extdata/outputsForTests/run_iffire/outDirectory/lai.out deleted file mode 100644 index 9835c82..0000000 --- a/rLPJGUESS/inst/extdata/outputsForTests/run_iffire/outDirectory/lai.out +++ /dev/null @@ -1,63 +0,0 @@ - Lon Lat Year Abi_alb BES Bet_pen Bet_pub Car_bet Cor_ave Fag_syl Fra_exc Jun_oxy MRS Pic_abi Pic_sit Pin_syl Pin_hal Pop_tre Que_coc Que_ile Que_pub Que_rob Til_cor Ulm_gla C3_gr C4_gr Total - 10.45 51.08 1951 0.0000 0.0000 0.0000 1.3748 0.0331 0.0000 0.9019 0.0856 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0489 0.0047 0.1346 0.0000 0.0000 2.5837 - 10.45 51.08 1952 0.0000 0.0000 0.0000 1.3945 0.0341 0.0000 0.9466 0.0881 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0503 0.0048 0.1384 0.0000 0.0000 2.6569 - 10.45 51.08 1953 0.0000 0.0000 0.0000 1.4302 0.0363 0.0000 1.0050 0.0935 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0534 0.0052 0.1470 0.0000 0.0000 2.7706 - 10.45 51.08 1954 0.0000 0.0000 0.0000 1.2236 0.0366 0.0000 1.0345 0.0942 0.0000 0.0000 0.0002 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0539 0.0052 0.1481 0.0000 0.0000 2.5964 - 10.45 51.08 1955 0.0000 0.0000 0.0000 1.2310 0.0374 0.0000 1.0693 0.0824 0.0000 0.0000 0.0003 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0549 0.0054 0.1373 0.0000 0.0000 2.6179 - 10.45 51.08 1956 0.0000 0.0000 0.0000 1.2376 0.0383 0.0000 1.1126 0.0703 0.0000 0.0000 0.0003 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0562 0.0056 0.1265 0.0000 0.0000 2.6476 - 10.45 51.08 1957 0.0000 0.0000 0.0000 1.2658 0.0391 0.0000 1.1682 0.0716 0.0000 0.0000 0.0003 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0572 0.0057 0.1288 0.0000 0.0000 2.7367 - 10.45 51.08 1958 0.0000 0.0000 0.0000 0.8447 0.0396 0.0000 1.2031 0.0724 0.0000 0.0000 0.0003 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0580 0.0059 0.1304 0.0000 0.0000 2.3543 - 10.45 51.08 1959 0.0000 0.0000 0.0000 0.8911 0.0428 0.0000 1.3223 0.0783 0.0000 0.0000 0.0004 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0626 0.0064 0.1252 0.0000 0.0000 2.5290 - 10.45 51.08 1960 0.0000 0.0000 0.0000 0.9084 0.0440 0.0000 1.3982 0.0802 0.0000 0.0000 0.0004 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0642 0.0033 0.1284 0.0000 0.0000 2.6271 - 10.45 51.08 1961 0.0000 0.0000 0.0000 0.9242 0.0453 0.0000 1.4716 0.0826 0.0000 0.0000 0.0004 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0496 0.0035 0.1322 0.0000 0.0000 2.7093 - 10.45 51.08 1962 0.0000 0.0000 0.0000 0.9412 0.0348 0.0000 1.5310 0.0843 0.0000 0.0000 0.0005 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0506 0.0036 0.1349 0.0000 0.0000 2.7808 - 10.45 51.08 1963 0.0000 0.0000 0.0000 0.9549 0.0354 0.0000 1.6015 0.0857 0.0000 0.0000 0.0005 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0514 0.0037 0.1199 0.0000 0.0000 2.8529 - 10.45 51.08 1964 0.0000 0.0000 0.0000 0.9677 0.0356 0.0000 1.6773 0.0859 0.0000 0.0000 0.0005 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0516 0.0037 0.1203 0.0000 0.0000 2.9425 - 10.45 51.08 1965 0.0000 0.0000 0.0000 0.4846 0.0355 0.0000 1.7200 0.0856 0.0000 0.0000 0.0005 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0513 0.0037 0.1198 0.0000 0.0000 2.5010 - 10.45 51.08 1966 0.0000 0.0000 0.0000 0.4992 0.0376 0.0000 1.8384 0.0905 0.0000 0.0000 0.0006 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0543 0.0040 0.1267 0.0000 0.0000 2.6515 - 10.45 51.08 1967 0.0000 0.0000 0.0000 0.5071 0.0255 0.0000 1.9268 0.0917 0.0000 0.0000 0.0009 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0550 0.0041 0.1284 0.0000 0.0000 2.7395 - 10.45 51.08 1968 0.0000 0.0000 0.0000 0.5153 0.0260 0.0000 2.0116 0.0934 0.0000 0.0000 0.0011 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0561 0.0042 0.1308 0.0000 0.0000 2.8384 - 10.45 51.08 1969 0.0000 0.0000 0.0000 0.5167 0.0257 0.0000 2.0777 0.0739 0.0000 0.0000 0.0011 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0554 0.0042 0.1293 0.0000 0.0000 2.8839 - 10.45 51.08 1970 0.0000 0.0000 0.0000 0.5157 0.0251 0.0000 2.1326 0.0721 0.0000 0.0000 0.0011 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0541 0.0041 0.1262 0.0000 0.0000 2.9309 - 10.45 51.08 1971 0.0000 0.0000 0.0000 0.5180 0.0247 0.0000 2.2001 0.0711 0.0000 0.0000 0.0012 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0533 0.0040 0.1243 0.0000 0.0000 2.9967 - 10.45 51.08 1972 0.0000 0.0000 0.0000 0.5199 0.0240 0.0000 2.2427 0.0695 0.0000 0.0000 0.0013 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0521 0.0039 0.1216 0.0000 0.0000 3.0350 - 10.45 51.08 1973 0.0000 0.0000 0.0000 0.5139 0.0234 0.0000 2.2745 0.0676 0.0000 0.0000 0.0013 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0507 0.0038 0.1183 0.0000 0.0000 3.0535 - 10.45 51.08 1974 0.0000 0.0000 0.0000 0.5158 0.0232 0.0000 2.3186 0.0504 0.0000 0.0000 0.0014 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0504 0.0038 0.1008 0.0000 0.0000 3.0645 - 10.45 51.08 1975 0.0000 0.0000 0.0000 0.5074 0.0222 0.0000 2.3335 0.0486 0.0000 0.0000 0.0014 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0486 0.0036 0.0972 0.0000 0.0000 3.0624 - 10.45 51.08 1976 0.0000 0.0000 0.0000 0.5035 0.0208 0.0000 2.3764 0.0305 0.0000 0.0000 0.0014 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0457 0.0034 0.0914 0.0000 0.0000 3.0731 - 10.45 51.08 1977 0.0000 0.0000 0.0000 0.4977 0.0203 0.0000 2.3943 0.0297 0.0000 0.0000 0.0014 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0446 0.0033 0.0744 0.0000 0.0000 3.0659 - 10.45 51.08 1978 0.0000 0.0000 0.0000 0.4910 0.0197 0.0000 2.4100 0.0289 0.0000 0.0000 0.0015 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0434 0.0032 0.0723 0.0000 0.0000 3.0701 - 10.45 51.08 1979 0.0000 0.0000 0.0000 0.4779 0.0191 0.0000 2.4071 0.0280 0.0000 0.0000 0.0015 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0420 0.0031 0.0700 0.0000 0.0000 3.0487 - 10.45 51.08 1980 0.0000 0.0000 0.0000 0.2336 0.0183 0.0000 2.4118 0.0268 0.0000 0.0000 0.0017 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0402 0.0030 0.0670 0.0000 0.0000 2.8023 - 10.45 51.08 1981 0.0000 0.0000 0.0000 0.2342 0.0185 0.0000 2.4747 0.0271 0.0000 0.0000 0.0017 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0406 0.0031 0.0677 0.0000 0.0000 2.8676 - 10.45 51.08 1982 0.0000 0.0000 0.0000 0.2305 0.0177 0.0000 2.5107 0.0130 0.0000 0.0000 0.0018 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0260 0.0029 0.0650 0.0000 0.0000 2.8679 - 10.45 51.08 1983 0.0000 0.0000 0.0000 0.2310 0.0172 0.0000 2.5796 0.0127 0.0000 0.0000 0.0018 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0127 0.0029 0.0634 0.0000 0.0000 2.9212 - 10.45 51.08 1984 0.0000 0.0000 0.0000 0.2244 0.0165 0.0000 2.5727 0.0122 0.0000 0.0000 0.0019 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0122 0.0000 0.0608 0.0000 0.0000 2.9007 - 10.45 51.08 1985 0.0000 0.0000 0.0000 0.2242 0.0163 0.0000 2.6370 0.0120 0.0000 0.0000 0.0020 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0120 0.0000 0.0599 0.0000 0.0000 2.9633 - 10.45 51.08 1986 0.0000 0.0000 0.0000 0.2219 0.0155 0.0000 2.6757 0.0114 0.0000 0.0000 0.0020 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0114 0.0000 0.0571 0.0000 0.0000 2.9951 - 10.45 51.08 1987 0.0000 0.0000 0.0000 0.2198 0.0150 0.0000 2.6992 0.0110 0.0000 0.0000 0.0020 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0110 0.0000 0.0552 0.0000 0.0000 3.0131 - 10.45 51.08 1988 0.0000 0.0000 0.0000 0.2162 0.0146 0.0000 2.7367 0.0108 0.0000 0.0000 0.0021 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0108 0.0000 0.0540 0.0000 0.0000 3.0451 - 10.45 51.08 1989 0.0000 0.0000 0.0000 0.2155 0.0143 0.0000 2.8138 0.0106 0.0000 0.0000 0.0022 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0106 0.0000 0.0529 0.0000 0.0000 3.1199 - 10.45 51.08 1990 0.0000 0.0000 0.0000 0.2166 0.0071 0.0000 2.8953 0.0106 0.0000 0.0000 0.0023 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0106 0.0000 0.0528 0.0000 0.0000 3.1952 - 10.45 51.08 1991 0.0000 0.0000 0.0000 0.2144 0.0000 0.0000 2.9198 0.0101 0.0000 0.0000 0.0022 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0101 0.0000 0.0504 0.0000 0.0000 3.2070 - 10.45 51.08 1992 0.0000 0.0000 0.0000 0.2067 0.0000 0.0000 2.9053 0.0094 0.0000 0.0000 0.0023 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0094 0.0000 0.0469 0.0000 0.0000 3.1800 - 10.45 51.08 1993 0.0000 0.0000 0.0000 0.2034 0.0000 0.0000 2.9427 0.0090 0.0000 0.0000 0.0022 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0090 0.0000 0.0360 0.0000 0.0000 3.2022 - 10.45 51.08 1994 0.0000 0.0000 0.0000 0.1978 0.0000 0.0000 2.9453 0.0084 0.0000 0.0000 0.0021 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0084 0.0000 0.0335 0.0000 0.0000 3.1953 - 10.45 51.08 1995 0.0000 0.0000 0.0000 0.1921 0.0000 0.0000 2.9392 0.0077 0.0000 0.0000 0.0020 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0077 0.0000 0.0308 0.0000 0.0000 3.1795 - 10.45 51.08 1996 0.0000 0.0000 0.0000 0.1864 0.0000 0.0000 2.9239 0.0072 0.0000 0.0000 0.0019 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0072 0.0000 0.0289 0.0000 0.0000 3.1555 - 10.45 51.08 1997 0.0000 0.0000 0.0000 0.1828 0.0000 0.0000 2.9369 0.0069 0.0000 0.0000 0.0019 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0069 0.0000 0.0274 0.0000 0.0000 3.1628 - 10.45 51.08 1998 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 2.9502 0.0065 0.0000 0.0000 0.0019 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0065 0.0000 0.0262 0.0000 0.0000 2.9913 - 10.45 51.08 1999 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 3.0035 0.0063 0.0000 0.0000 0.0019 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0063 0.0000 0.0254 0.0000 0.0000 3.0434 - 10.45 51.08 2000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 3.0279 0.0060 0.0000 0.0000 0.0019 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0060 0.0000 0.0181 0.0000 0.0000 3.0599 - 10.45 51.08 2001 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 3.0558 0.0057 0.0000 0.0000 0.0018 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0057 0.0000 0.0172 0.0000 0.0000 3.0864 - 10.45 51.08 2002 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 3.0457 0.0055 0.0000 0.0000 0.0018 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0055 0.0000 0.0164 0.0000 0.0000 3.0750 - 10.45 51.08 2003 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 3.0693 0.0050 0.0000 0.0000 0.0018 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0050 0.0000 0.0150 0.0000 0.0000 3.0961 - 10.45 51.08 2004 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 3.1382 0.0000 0.0000 0.0000 0.0018 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0049 0.0000 0.0147 0.0000 0.0000 3.1596 - 10.45 51.08 2005 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 3.1871 0.0000 0.0000 0.0000 0.0017 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0046 0.0000 0.0139 0.0000 0.0000 3.2074 - 10.45 51.08 2006 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 3.2129 0.0000 0.0000 0.0000 0.0016 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0042 0.0000 0.0125 0.0000 0.0000 3.2313 - 10.45 51.08 2007 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 3.2344 0.0000 0.0000 0.0000 0.0018 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0040 0.0000 0.0081 0.0000 0.0000 3.2483 - 10.45 51.08 2008 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 3.2398 0.0000 0.0000 0.0000 0.0018 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0038 0.0000 0.0076 0.0000 0.0000 3.2529 - 10.45 51.08 2009 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 3.2379 0.0000 0.0000 0.0000 0.0017 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0036 0.0000 0.0072 0.0000 0.0000 3.2504 - 10.45 51.08 2010 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 3.2304 0.0000 0.0000 0.0000 0.0016 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0033 0.0000 0.0065 0.0000 0.0000 3.2418 - 10.45 51.08 2011 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 3.2724 0.0000 0.0000 0.0000 0.0017 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0032 0.0000 0.0063 0.0000 0.0000 3.2835 - 10.45 51.08 2012 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 3.2658 0.0000 0.0000 0.0000 0.0016 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0030 0.0000 0.0059 0.0000 0.0000 3.2763 diff --git a/rLPJGUESS/inst/extdata/outputsForTests/run_iffire/outDirectory/maet.out b/rLPJGUESS/inst/extdata/outputsForTests/run_iffire/outDirectory/maet.out deleted file mode 100644 index e26e728..0000000 --- a/rLPJGUESS/inst/extdata/outputsForTests/run_iffire/outDirectory/maet.out +++ /dev/null @@ -1,63 +0,0 @@ - Lon Lat Year Jan Feb Mar Apr May Jun Jul Aug Sep Oct Nov Dec - 10.45 51.08 1951 0.000 0.000 1.915 20.693 42.468 52.883 60.699 47.534 32.032 14.715 2.489 0.000 - 10.45 51.08 1952 0.000 0.000 0.513 24.658 45.369 56.170 63.058 42.670 18.124 9.296 0.823 0.000 - 10.45 51.08 1953 0.000 0.121 6.516 36.574 53.970 44.815 56.123 49.324 31.629 13.685 0.838 0.000 - 10.45 51.08 1954 0.000 0.000 1.577 15.402 51.939 56.857 39.626 43.378 27.632 13.269 3.313 0.000 - 10.45 51.08 1955 0.000 0.000 1.290 16.642 44.387 48.667 42.388 36.812 26.676 12.221 2.206 0.000 - 10.45 51.08 1956 0.000 0.000 0.738 10.828 49.265 38.348 46.947 40.126 28.074 11.859 1.479 0.000 - 10.45 51.08 1957 0.002 0.087 9.212 27.817 41.842 62.865 49.710 41.748 22.500 11.503 0.050 0.000 - 10.45 51.08 1958 0.000 0.535 1.419 12.111 43.504 47.914 56.475 50.148 31.405 12.822 1.567 0.000 - 10.45 51.08 1959 0.000 0.008 5.880 26.837 43.399 52.414 53.696 38.580 34.534 15.032 0.097 0.000 - 10.45 51.08 1960 0.000 0.000 1.990 15.087 38.223 57.837 48.445 38.362 22.572 9.550 2.378 0.000 - 10.45 51.08 1961 0.000 0.092 6.388 20.409 31.998 51.914 44.967 40.287 32.300 13.391 0.000 0.000 - 10.45 51.08 1962 0.000 0.001 0.278 12.735 32.193 54.989 44.700 44.859 29.079 12.650 1.950 0.000 - 10.45 51.08 1963 0.000 0.000 0.611 13.667 43.881 48.472 58.188 40.607 27.711 10.595 2.833 0.000 - 10.45 51.08 1964 0.000 0.000 0.032 12.989 49.401 66.749 60.380 43.307 30.067 9.873 0.479 0.000 - 10.45 51.08 1965 0.009 0.000 0.564 12.732 37.099 48.797 45.354 45.781 25.740 12.846 1.078 0.000 - 10.45 51.08 1966 0.000 1.174 3.209 16.743 44.470 48.825 37.283 36.781 22.378 11.288 0.291 0.000 - 10.45 51.08 1967 0.000 0.387 5.383 12.712 41.328 41.116 57.526 36.943 20.580 12.394 1.945 0.000 - 10.45 51.08 1968 0.000 0.001 2.618 20.274 33.827 45.932 49.056 36.031 20.154 9.199 1.326 0.000 - 10.45 51.08 1969 0.000 0.000 0.000 6.475 36.732 45.294 54.666 36.186 25.347 11.486 2.989 0.000 - 10.45 51.08 1970 0.000 0.000 0.144 5.242 30.070 54.251 47.488 34.169 27.020 7.509 2.395 0.083 - 10.45 51.08 1971 0.000 0.001 0.435 12.929 37.557 36.220 59.300 44.428 25.614 12.832 2.071 0.000 - 10.45 51.08 1972 0.000 0.000 2.902 13.828 32.672 46.055 42.165 34.023 20.169 9.771 2.148 0.000 - 10.45 51.08 1973 0.000 0.000 1.074 5.408 36.668 45.333 45.834 46.361 25.114 9.328 1.640 0.000 - 10.45 51.08 1974 0.001 0.266 5.914 22.944 32.684 39.702 39.737 38.461 26.220 5.385 0.000 0.001 - 10.45 51.08 1975 0.000 0.001 0.434 10.074 35.148 37.385 49.637 48.531 25.000 7.695 1.448 0.000 - 10.45 51.08 1976 0.000 0.000 0.338 12.962 39.700 50.357 52.461 41.434 18.734 9.770 1.825 0.000 - 10.45 51.08 1977 0.000 0.009 5.183 13.493 38.432 31.919 40.953 27.068 19.770 10.073 1.589 0.000 - 10.45 51.08 1978 0.000 0.008 2.597 13.641 29.653 39.737 39.871 33.945 17.304 9.969 1.105 0.000 - 10.45 51.08 1979 0.000 0.000 0.183 6.633 31.053 42.951 34.790 35.474 22.977 10.581 1.027 0.000 - 10.45 51.08 1980 0.001 0.001 0.430 6.613 31.710 40.041 32.487 39.662 22.867 9.417 0.184 0.002 - 10.45 51.08 1981 0.007 0.000 5.924 17.753 31.832 35.540 33.841 30.725 20.889 8.204 0.152 0.000 - 10.45 51.08 1982 0.000 0.000 0.298 10.411 31.718 41.453 43.496 38.426 27.148 8.245 3.091 0.000 - 10.45 51.08 1983 0.000 0.001 1.828 14.076 26.001 40.418 49.237 35.980 21.377 9.756 1.745 0.000 - 10.45 51.08 1984 0.000 0.000 0.095 6.532 19.671 32.109 34.597 31.429 15.547 8.464 1.895 0.000 - 10.45 51.08 1985 0.000 0.000 0.146 12.627 32.222 31.289 43.625 32.633 21.116 9.536 0.833 0.000 - 10.45 51.08 1986 0.000 0.000 0.409 5.010 32.483 37.874 39.193 33.503 17.231 10.500 2.668 0.000 - 10.45 51.08 1987 0.000 0.000 0.129 12.256 25.999 27.248 38.398 28.003 19.291 9.074 1.169 0.000 - 10.45 51.08 1988 0.000 0.000 0.206 10.204 36.625 32.262 40.245 37.612 19.245 8.706 1.269 0.000 - 10.45 51.08 1989 0.000 0.002 4.179 12.437 42.685 39.472 39.164 35.973 20.034 9.983 1.027 0.000 - 10.45 51.08 1990 0.000 0.778 9.677 16.067 42.611 32.375 41.704 38.486 15.170 9.931 0.000 0.000 - 10.45 51.08 1991 0.000 0.000 4.225 16.647 23.800 33.785 46.567 33.850 25.006 10.052 0.723 0.000 - 10.45 51.08 1992 0.000 0.009 1.784 11.805 40.487 34.289 40.231 35.434 20.041 5.245 0.257 0.000 - 10.45 51.08 1993 0.000 0.009 3.629 20.959 36.898 35.267 34.751 32.856 15.418 6.923 0.174 0.000 - 10.45 51.08 1994 0.000 0.011 3.836 14.093 31.700 38.487 46.061 32.402 18.207 7.321 1.711 0.000 - 10.45 51.08 1995 0.000 0.002 1.361 11.983 29.893 28.483 43.199 38.935 14.765 10.230 0.801 0.000 - 10.45 51.08 1996 0.000 0.000 0.066 9.688 21.321 36.564 32.746 29.085 12.411 7.235 1.555 0.000 - 10.45 51.08 1997 0.000 0.169 4.796 12.449 30.603 37.285 31.791 36.044 23.284 6.947 0.734 0.000 - 10.45 51.08 1998 0.000 0.755 4.455 16.811 35.202 35.808 30.825 33.012 14.601 4.722 0.000 0.000 - 10.45 51.08 1999 0.000 0.038 2.243 13.538 31.130 31.347 34.447 28.631 22.966 6.405 0.979 0.000 - 10.45 51.08 2000 0.000 0.054 2.543 15.697 34.402 34.575 22.916 31.368 15.324 7.999 0.953 0.000 - 10.45 51.08 2001 0.000 0.001 1.185 9.622 33.887 26.717 36.935 30.718 11.780 9.531 1.000 0.000 - 10.45 51.08 2002 0.000 0.703 5.249 13.661 25.499 32.284 28.125 26.714 16.923 4.697 0.000 0.000 - 10.45 51.08 2003 0.000 0.000 1.766 12.327 28.562 40.920 34.446 38.367 18.603 5.078 0.485 0.000 - 10.45 51.08 2004 0.000 0.061 4.576 17.888 24.234 30.574 31.475 32.723 20.364 9.237 0.000 0.000 - 10.45 51.08 2005 0.000 0.000 2.279 15.822 28.885 34.637 33.799 24.638 20.726 9.998 1.727 0.000 - 10.45 51.08 2006 0.000 0.000 0.657 10.726 29.949 35.652 44.438 20.780 23.762 8.595 1.678 0.000 - 10.45 51.08 2007 0.000 0.000 0.365 18.782 31.026 33.933 31.476 28.482 15.036 6.989 0.750 0.000 - 10.45 51.08 2008 0.000 0.665 3.656 11.021 32.135 35.077 33.786 27.724 14.605 7.025 0.503 0.000 - 10.45 51.08 2009 0.000 0.000 0.243 17.344 27.528 25.569 32.068 32.549 17.423 5.035 0.617 0.000 - 10.45 51.08 2010 0.000 0.000 2.589 16.809 18.432 36.117 37.594 21.461 14.602 7.334 0.962 0.000 - 10.45 51.08 2011 0.000 0.015 4.066 21.994 33.899 31.571 28.313 24.638 19.657 8.766 0.485 0.000 - 10.45 51.08 2012 0.000 0.000 4.861 12.430 31.822 25.746 29.962 31.453 18.146 8.026 0.687 0.000 diff --git a/rLPJGUESS/inst/extdata/outputsForTests/run_iffire/outDirectory/mevap.out b/rLPJGUESS/inst/extdata/outputsForTests/run_iffire/outDirectory/mevap.out deleted file mode 100644 index 2d49724..0000000 --- a/rLPJGUESS/inst/extdata/outputsForTests/run_iffire/outDirectory/mevap.out +++ /dev/null @@ -1,63 +0,0 @@ - Lon Lat Year Jan Feb Mar Apr May Jun Jul Aug Sep Oct Nov Dec - 10.45 51.08 1951 5.981 12.666 21.910 18.324 5.547 32.985 17.539 21.629 9.809 3.372 5.429 6.210 - 10.45 51.08 1952 4.381 3.348 27.182 30.524 23.845 13.202 3.285 1.630 13.789 10.715 6.999 3.940 - 10.45 51.08 1953 0.148 5.289 22.825 8.428 4.768 14.190 22.043 10.254 2.411 1.741 3.955 2.738 - 10.45 51.08 1954 4.406 9.927 20.314 23.987 10.373 5.236 18.721 19.778 10.061 8.221 3.867 5.139 - 10.45 51.08 1955 0.731 6.069 10.185 28.341 10.633 10.751 21.920 25.910 11.470 4.971 4.393 5.674 - 10.45 51.08 1956 6.471 0.000 21.979 28.063 19.006 24.742 34.846 19.872 8.621 5.436 4.199 4.109 - 10.45 51.08 1957 6.907 12.375 19.925 12.966 9.455 14.014 19.161 18.393 8.682 10.204 9.475 4.906 - 10.45 51.08 1958 7.597 11.001 9.240 25.798 21.282 23.483 24.148 16.333 7.463 7.428 5.625 5.900 - 10.45 51.08 1959 7.773 9.731 14.602 14.536 12.166 17.810 2.273 13.190 3.563 0.467 7.045 4.431 - 10.45 51.08 1960 4.825 11.347 17.383 15.775 22.760 15.176 5.428 12.833 14.199 11.103 6.592 2.191 - 10.45 51.08 1961 1.417 15.386 15.554 23.413 27.329 31.192 5.278 8.428 4.357 0.937 2.582 4.261 - 10.45 51.08 1962 7.496 11.982 9.493 26.976 14.236 5.680 10.375 5.115 5.447 1.593 0.539 1.862 - 10.45 51.08 1963 0.000 0.000 19.992 27.292 12.448 13.443 20.175 22.890 8.797 6.894 5.097 4.655 - 10.45 51.08 1964 3.539 12.268 14.784 26.635 27.776 15.000 7.706 8.051 3.939 2.522 3.634 3.236 - 10.45 51.08 1965 5.962 0.000 14.392 23.266 22.789 24.883 14.526 13.774 8.229 3.053 1.231 5.474 - 10.45 51.08 1966 4.405 10.010 18.177 23.639 15.357 18.736 38.485 22.248 14.341 5.337 7.782 5.723 - 10.45 51.08 1967 6.608 11.283 21.269 20.040 14.414 30.463 19.095 13.265 16.855 9.492 4.310 4.322 - 10.45 51.08 1968 4.614 11.791 25.894 17.783 18.909 14.448 8.613 8.820 11.716 11.160 6.310 3.202 - 10.45 51.08 1969 5.369 3.169 0.000 32.828 35.002 35.115 12.808 5.762 18.889 5.082 2.956 1.488 - 10.45 51.08 1970 0.000 2.553 14.226 35.367 27.902 12.742 10.364 29.445 12.259 6.772 5.266 4.736 - 10.45 51.08 1971 3.329 8.980 14.109 17.686 15.688 17.260 6.779 1.192 2.069 3.880 3.725 5.598 - 10.45 51.08 1972 3.795 7.973 26.734 18.737 21.458 29.093 24.094 35.140 10.498 4.059 4.192 5.339 - 10.45 51.08 1973 5.350 9.852 22.950 19.400 19.020 8.556 7.082 7.453 8.436 9.599 7.156 5.568 - 10.45 51.08 1974 7.084 10.400 21.192 13.003 14.800 20.603 27.525 13.641 8.662 5.486 9.027 6.762 - 10.45 51.08 1975 8.079 11.183 21.704 30.931 23.068 17.519 18.368 4.713 6.706 3.818 3.421 2.893 - 10.45 51.08 1976 6.803 10.125 14.980 15.761 9.988 24.091 2.013 2.685 1.012 3.924 2.958 3.429 - 10.45 51.08 1977 4.245 10.087 21.855 20.785 12.962 20.298 29.194 29.520 17.252 8.794 8.873 5.741 - 10.45 51.08 1978 6.140 5.540 18.884 15.598 18.725 7.969 14.114 15.136 10.879 12.002 4.623 3.746 - 10.45 51.08 1979 0.000 0.000 18.068 32.339 24.672 14.506 21.149 11.948 6.876 4.112 5.924 6.316 - 10.45 51.08 1980 5.250 11.258 12.150 21.855 22.542 12.919 15.562 5.250 4.992 6.203 4.490 4.003 - 10.45 51.08 1981 2.667 8.717 25.550 17.294 34.975 29.063 10.079 25.454 10.460 14.515 9.748 1.952 - 10.45 51.08 1982 5.968 11.358 17.304 14.938 19.839 6.168 8.736 7.054 0.701 3.925 2.328 2.174 - 10.45 51.08 1983 3.892 5.882 14.804 40.393 27.708 22.186 7.359 15.338 9.532 4.339 1.520 1.792 - 10.45 51.08 1984 3.856 9.394 18.066 35.959 32.675 31.986 21.221 26.899 17.327 13.444 6.602 5.836 - 10.45 51.08 1985 2.473 10.298 15.387 21.108 10.689 16.012 16.636 13.454 8.545 1.939 0.638 3.668 - 10.45 51.08 1986 6.856 3.741 22.052 32.754 32.718 29.975 9.256 12.648 15.333 10.500 6.255 3.833 - 10.45 51.08 1987 1.808 4.341 7.432 27.283 21.316 43.756 25.919 29.464 18.211 11.698 4.562 5.508 - 10.45 51.08 1988 7.884 8.336 11.317 31.892 10.879 10.725 30.577 10.435 4.093 1.957 1.677 4.982 - 10.45 51.08 1989 8.226 9.424 24.338 15.058 17.889 16.544 8.046 7.236 4.857 6.293 9.690 6.479 - 10.45 51.08 1990 7.510 14.414 22.111 17.249 12.374 26.389 18.183 3.459 8.968 6.355 5.034 4.364 - 10.45 51.08 1991 5.986 7.626 16.776 11.492 11.011 11.612 9.033 27.128 4.113 2.340 1.934 2.389 - 10.45 51.08 1992 5.261 9.109 21.476 28.314 14.502 17.044 31.987 11.277 14.361 5.050 7.412 6.042 - 10.45 51.08 1993 7.232 3.741 20.790 17.024 15.312 38.391 33.820 19.712 12.243 8.114 5.610 5.854 - 10.45 51.08 1994 7.852 9.887 26.500 29.536 26.537 26.378 34.090 19.854 19.772 8.776 6.866 6.621 - 10.45 51.08 1995 7.485 14.577 18.294 22.769 23.732 34.957 35.400 21.138 18.318 13.370 4.348 2.919 - 10.45 51.08 1996 4.205 10.006 14.955 21.944 29.489 26.379 31.418 29.262 15.350 9.297 6.165 4.851 - 10.45 51.08 1997 6.022 14.972 25.272 25.663 18.481 7.879 29.459 20.731 9.591 6.550 5.200 4.284 - 10.45 51.08 1998 7.550 10.919 18.159 16.205 21.998 19.313 20.829 9.625 19.598 14.658 9.578 5.465 - 10.45 51.08 1999 7.036 10.013 20.504 22.685 18.058 32.308 40.692 16.432 9.210 3.650 6.053 5.941 - 10.45 51.08 2000 7.287 15.661 26.804 27.440 16.948 12.130 14.538 20.041 19.841 11.951 5.622 3.682 - 10.45 51.08 2001 4.146 9.029 17.596 31.157 28.154 23.384 42.233 7.568 9.431 9.630 6.632 5.264 - 10.45 51.08 2002 7.597 13.436 23.745 22.706 33.120 35.726 31.292 31.783 14.109 13.891 10.798 4.268 - 10.45 51.08 2003 7.473 11.146 24.359 16.778 17.437 42.209 10.680 2.967 9.767 7.410 6.252 5.955 - 10.45 51.08 2004 6.723 11.635 17.220 20.184 37.232 16.754 27.499 9.166 5.978 5.104 5.430 5.486 - 10.45 51.08 2005 7.668 10.224 19.447 24.895 21.597 9.987 19.617 28.265 20.816 12.913 5.460 4.121 - 10.45 51.08 2006 4.683 7.079 13.201 28.742 24.794 34.949 35.407 24.079 21.756 10.502 5.907 4.165 - 10.45 51.08 2007 6.746 11.354 24.163 22.674 20.657 44.893 39.210 41.897 15.604 13.256 6.217 5.315 - 10.45 51.08 2008 7.550 10.687 20.301 31.217 19.918 16.643 21.397 6.192 7.240 9.624 7.528 5.276 - 10.45 51.08 2009 5.683 9.240 21.075 27.769 35.232 22.457 27.845 12.996 12.419 9.848 10.261 5.548 - 10.45 51.08 2010 0.000 2.939 24.006 18.464 31.644 19.363 31.117 42.391 17.159 15.789 8.632 0.000 - 10.45 51.08 2011 4.908 10.928 21.711 16.706 6.157 9.743 31.737 21.273 18.613 8.784 4.607 3.621 - 10.45 51.08 2012 7.521 9.446 17.856 10.533 16.039 33.505 38.161 19.784 8.875 6.271 4.489 5.998 diff --git a/rLPJGUESS/inst/extdata/outputsForTests/run_iffire/outDirectory/mgpp.out b/rLPJGUESS/inst/extdata/outputsForTests/run_iffire/outDirectory/mgpp.out deleted file mode 100644 index 27038e0..0000000 --- a/rLPJGUESS/inst/extdata/outputsForTests/run_iffire/outDirectory/mgpp.out +++ /dev/null @@ -1,63 +0,0 @@ - Lon Lat Year Jan Feb Mar Apr May Jun Jul Aug Sep Oct Nov Dec - 10.45 51.08 1951 0.000 0.000 0.004 0.053 0.169 0.205 0.199 0.161 0.121 0.075 0.018 0.000 - 10.45 51.08 1952 0.000 0.000 0.001 0.080 0.191 0.204 0.181 0.135 0.095 0.055 0.009 0.000 - 10.45 51.08 1953 0.000 0.000 0.015 0.133 0.185 0.169 0.185 0.169 0.125 0.070 0.005 0.000 - 10.45 51.08 1954 0.000 0.000 0.003 0.038 0.186 0.196 0.164 0.157 0.110 0.071 0.020 0.000 - 10.45 51.08 1955 0.000 0.000 0.002 0.037 0.177 0.186 0.157 0.137 0.112 0.064 0.013 0.000 - 10.45 51.08 1956 0.000 0.000 0.001 0.027 0.176 0.164 0.176 0.163 0.119 0.063 0.010 0.000 - 10.45 51.08 1957 0.000 0.000 0.027 0.101 0.174 0.208 0.160 0.159 0.104 0.063 0.001 0.000 - 10.45 51.08 1958 0.000 0.001 0.003 0.032 0.164 0.174 0.199 0.176 0.125 0.067 0.012 0.000 - 10.45 51.08 1959 0.000 0.000 0.015 0.095 0.182 0.191 0.163 0.141 0.145 0.078 0.001 0.000 - 10.45 51.08 1960 0.000 0.000 0.004 0.040 0.154 0.204 0.190 0.151 0.105 0.055 0.016 0.000 - 10.45 51.08 1961 0.000 0.000 0.017 0.088 0.153 0.196 0.171 0.157 0.120 0.069 0.000 0.000 - 10.45 51.08 1962 0.000 0.000 0.000 0.033 0.142 0.202 0.182 0.173 0.127 0.062 0.011 0.000 - 10.45 51.08 1963 0.000 0.000 0.001 0.041 0.177 0.197 0.206 0.162 0.122 0.058 0.022 0.000 - 10.45 51.08 1964 0.000 0.000 0.000 0.041 0.200 0.236 0.210 0.166 0.131 0.053 0.003 0.000 - 10.45 51.08 1965 0.000 0.000 0.001 0.033 0.152 0.201 0.185 0.190 0.125 0.066 0.007 0.000 - 10.45 51.08 1966 0.000 0.003 0.007 0.060 0.195 0.192 0.169 0.158 0.108 0.061 0.001 0.000 - 10.45 51.08 1967 0.000 0.001 0.012 0.035 0.169 0.183 0.211 0.156 0.104 0.069 0.011 0.000 - 10.45 51.08 1968 0.000 0.000 0.007 0.066 0.165 0.199 0.203 0.155 0.104 0.056 0.008 0.000 - 10.45 51.08 1969 0.000 0.000 0.000 0.018 0.162 0.201 0.204 0.150 0.125 0.068 0.021 0.000 - 10.45 51.08 1970 0.000 0.000 0.000 0.014 0.138 0.221 0.203 0.161 0.131 0.048 0.018 0.001 - 10.45 51.08 1971 0.000 0.000 0.001 0.039 0.157 0.181 0.235 0.172 0.132 0.071 0.014 0.000 - 10.45 51.08 1972 0.000 0.000 0.007 0.044 0.158 0.220 0.180 0.166 0.107 0.052 0.015 0.000 - 10.45 51.08 1973 0.000 0.000 0.002 0.013 0.161 0.207 0.196 0.193 0.122 0.054 0.010 0.000 - 10.45 51.08 1974 0.000 0.001 0.018 0.085 0.171 0.203 0.195 0.167 0.131 0.032 0.000 0.000 - 10.45 51.08 1975 0.000 0.000 0.001 0.031 0.169 0.190 0.208 0.193 0.124 0.045 0.009 0.000 - 10.45 51.08 1976 0.000 0.000 0.001 0.038 0.187 0.219 0.197 0.195 0.107 0.059 0.012 0.000 - 10.45 51.08 1977 0.000 0.000 0.017 0.047 0.202 0.167 0.198 0.147 0.107 0.066 0.015 0.000 - 10.45 51.08 1978 0.000 0.000 0.006 0.043 0.149 0.199 0.199 0.170 0.107 0.063 0.005 0.000 - 10.45 51.08 1979 0.000 0.000 0.000 0.020 0.133 0.203 0.185 0.177 0.124 0.061 0.008 0.000 - 10.45 51.08 1980 0.000 0.000 0.001 0.019 0.140 0.210 0.172 0.183 0.127 0.060 0.000 0.000 - 10.45 51.08 1981 0.000 0.000 0.020 0.077 0.168 0.184 0.172 0.160 0.122 0.053 0.001 0.000 - 10.45 51.08 1982 0.000 0.000 0.001 0.032 0.148 0.200 0.196 0.176 0.135 0.060 0.023 0.000 - 10.45 51.08 1983 0.000 0.000 0.005 0.061 0.161 0.208 0.216 0.173 0.129 0.061 0.012 0.000 - 10.45 51.08 1984 0.000 0.000 0.000 0.020 0.112 0.190 0.188 0.166 0.100 0.066 0.011 0.000 - 10.45 51.08 1985 0.000 0.000 0.000 0.046 0.169 0.186 0.225 0.180 0.126 0.057 0.006 0.000 - 10.45 51.08 1986 0.000 0.000 0.001 0.017 0.178 0.201 0.202 0.174 0.115 0.074 0.021 0.000 - 10.45 51.08 1987 0.000 0.000 0.000 0.049 0.154 0.178 0.206 0.165 0.119 0.061 0.010 0.000 - 10.45 51.08 1988 0.000 0.000 0.000 0.035 0.201 0.191 0.215 0.192 0.121 0.064 0.009 0.000 - 10.45 51.08 1989 0.000 0.000 0.012 0.056 0.240 0.224 0.207 0.184 0.122 0.074 0.010 0.000 - 10.45 51.08 1990 0.000 0.003 0.040 0.080 0.257 0.193 0.228 0.188 0.109 0.068 0.000 0.000 - 10.45 51.08 1991 0.000 0.000 0.015 0.078 0.143 0.214 0.222 0.180 0.146 0.069 0.005 0.000 - 10.45 51.08 1992 0.000 0.000 0.004 0.047 0.221 0.197 0.211 0.174 0.134 0.036 0.001 0.000 - 10.45 51.08 1993 0.000 0.000 0.011 0.097 0.218 0.209 0.202 0.188 0.110 0.049 0.001 0.000 - 10.45 51.08 1994 0.000 0.000 0.013 0.065 0.208 0.221 0.214 0.177 0.128 0.049 0.014 0.000 - 10.45 51.08 1995 0.000 0.000 0.003 0.052 0.185 0.186 0.219 0.200 0.108 0.075 0.006 0.000 - 10.45 51.08 1996 0.000 0.000 0.000 0.044 0.141 0.217 0.206 0.173 0.091 0.058 0.014 0.000 - 10.45 51.08 1997 0.000 0.001 0.016 0.048 0.185 0.220 0.196 0.187 0.150 0.050 0.006 0.000 - 10.45 51.08 1998 0.000 0.003 0.017 0.097 0.218 0.212 0.190 0.178 0.109 0.042 0.000 0.000 - 10.45 51.08 1999 0.000 0.000 0.007 0.070 0.214 0.216 0.200 0.178 0.143 0.050 0.009 0.000 - 10.45 51.08 2000 0.000 0.000 0.009 0.080 0.224 0.208 0.165 0.191 0.115 0.069 0.009 0.000 - 10.45 51.08 2001 0.000 0.000 0.004 0.045 0.227 0.194 0.225 0.176 0.099 0.080 0.008 0.000 - 10.45 51.08 2002 0.000 0.003 0.023 0.076 0.186 0.212 0.179 0.166 0.122 0.041 0.000 0.000 - 10.45 51.08 2003 0.000 0.000 0.006 0.061 0.200 0.251 0.205 0.197 0.137 0.036 0.005 0.000 - 10.45 51.08 2004 0.000 0.000 0.018 0.107 0.183 0.216 0.213 0.191 0.146 0.073 0.000 0.000 - 10.45 51.08 2005 0.000 0.000 0.009 0.087 0.188 0.228 0.215 0.176 0.148 0.086 0.018 0.000 - 10.45 51.08 2006 0.000 0.000 0.002 0.056 0.218 0.232 0.237 0.161 0.161 0.080 0.017 0.000 - 10.45 51.08 2007 0.000 0.000 0.001 0.102 0.227 0.229 0.211 0.198 0.125 0.057 0.007 0.000 - 10.45 51.08 2008 0.000 0.002 0.014 0.060 0.231 0.238 0.218 0.181 0.113 0.063 0.004 0.000 - 10.45 51.08 2009 0.000 0.000 0.001 0.112 0.214 0.196 0.212 0.202 0.134 0.043 0.006 0.000 - 10.45 51.08 2010 0.000 0.000 0.011 0.092 0.147 0.245 0.222 0.162 0.121 0.058 0.009 0.000 - 10.45 51.08 2011 0.000 0.000 0.014 0.148 0.236 0.224 0.204 0.169 0.148 0.069 0.005 0.000 - 10.45 51.08 2012 0.000 0.000 0.023 0.066 0.220 0.199 0.211 0.202 0.140 0.068 0.006 0.000 diff --git a/rLPJGUESS/inst/extdata/outputsForTests/run_iffire/outDirectory/mintercep.out b/rLPJGUESS/inst/extdata/outputsForTests/run_iffire/outDirectory/mintercep.out deleted file mode 100644 index e36075a..0000000 --- a/rLPJGUESS/inst/extdata/outputsForTests/run_iffire/outDirectory/mintercep.out +++ /dev/null @@ -1,63 +0,0 @@ - Lon Lat Year Jan Feb Mar Apr May Jun Jul Aug Sep Oct Nov Dec - 10.45 51.08 1951 0.000 0.000 0.077 0.322 1.505 7.935 1.894 3.568 1.961 0.707 0.882 0.000 - 10.45 51.08 1952 0.000 0.000 0.132 1.016 3.256 1.636 0.803 1.836 4.983 2.767 1.708 0.000 - 10.45 51.08 1953 0.000 0.000 0.025 0.539 2.213 4.415 2.287 1.903 0.901 1.267 0.000 0.000 - 10.45 51.08 1954 0.000 0.000 0.023 0.558 1.029 2.095 5.141 3.421 2.003 2.072 0.589 0.000 - 10.45 51.08 1955 0.000 0.000 0.013 0.397 1.533 2.536 4.539 2.406 1.958 1.090 0.104 0.000 - 10.45 51.08 1956 0.000 0.000 0.000 0.730 1.353 5.627 7.229 3.263 0.929 2.113 0.779 0.000 - 10.45 51.08 1957 0.003 0.026 0.429 0.599 2.589 2.902 4.067 1.955 3.004 0.830 0.000 0.000 - 10.45 51.08 1958 0.000 0.234 0.535 0.461 3.508 3.417 3.287 3.570 2.382 1.851 0.972 0.000 - 10.45 51.08 1959 0.000 0.000 0.178 1.249 1.828 1.855 0.566 2.410 0.020 1.004 0.008 0.000 - 10.45 51.08 1960 0.000 0.000 0.049 0.647 2.673 1.165 1.908 2.978 2.243 2.751 0.886 0.000 - 10.45 51.08 1961 0.000 0.000 0.300 3.576 4.841 3.636 1.933 1.915 0.957 0.593 0.000 0.000 - 10.45 51.08 1962 0.000 0.001 0.018 0.351 2.128 0.668 3.032 1.360 1.390 0.332 0.164 0.000 - 10.45 51.08 1963 0.000 0.000 0.041 0.471 1.292 4.629 1.579 5.424 1.787 1.296 1.636 0.000 - 10.45 51.08 1964 0.000 0.000 0.006 0.970 3.039 2.074 2.250 2.694 1.285 1.134 0.081 0.002 - 10.45 51.08 1965 0.005 0.000 0.009 0.838 1.194 4.816 3.173 2.213 2.218 0.407 0.771 0.000 - 10.45 51.08 1966 0.001 0.030 0.251 1.186 2.224 3.901 4.188 3.378 0.786 1.887 0.280 0.001 - 10.45 51.08 1967 0.000 0.017 0.328 0.383 2.069 4.147 1.956 2.931 2.787 1.424 0.296 0.000 - 10.45 51.08 1968 0.001 0.002 0.018 2.040 1.727 2.991 1.850 2.730 2.689 1.730 0.429 0.000 - 10.45 51.08 1969 0.001 0.001 0.001 0.633 3.517 4.951 0.482 3.943 1.675 0.667 0.863 0.000 - 10.45 51.08 1970 0.000 0.002 0.005 0.298 3.056 2.496 2.033 6.003 0.951 2.646 1.312 0.129 - 10.45 51.08 1971 0.000 0.001 0.026 0.942 1.924 3.703 0.632 1.961 1.388 1.229 0.692 0.001 - 10.45 51.08 1972 0.000 0.000 0.091 0.626 3.144 3.856 4.750 5.151 1.304 0.985 0.635 0.000 - 10.45 51.08 1973 0.001 0.001 0.001 0.227 1.698 2.370 3.018 1.413 2.474 1.946 0.516 0.001 - 10.45 51.08 1974 0.001 0.098 0.248 0.564 3.052 4.833 3.577 2.969 1.442 2.849 0.001 0.002 - 10.45 51.08 1975 0.000 0.001 0.052 0.326 2.379 4.055 1.567 2.417 1.591 1.563 0.206 0.000 - 10.45 51.08 1976 0.002 0.000 0.008 0.379 1.922 3.052 1.539 1.870 1.904 1.217 0.773 0.001 - 10.45 51.08 1977 0.001 0.002 0.648 0.570 1.597 4.957 3.725 5.896 1.858 1.666 1.216 0.001 - 10.45 51.08 1978 0.001 0.001 0.084 0.288 2.922 1.342 3.020 3.537 3.512 1.133 0.000 0.002 - 10.45 51.08 1979 0.002 0.001 0.046 0.412 1.628 3.734 3.342 1.235 2.569 0.398 1.283 0.002 - 10.45 51.08 1980 0.002 0.001 0.013 0.697 1.186 3.289 2.922 0.951 2.555 1.110 0.176 0.003 - 10.45 51.08 1981 0.018 0.001 0.382 0.922 3.566 2.596 1.517 3.607 1.577 1.491 0.002 0.001 - 10.45 51.08 1982 0.001 0.000 0.006 0.305 1.123 2.010 2.454 0.794 0.502 1.698 0.609 0.001 - 10.45 51.08 1983 0.002 0.001 0.176 1.791 4.595 1.252 1.416 2.084 2.511 0.212 0.099 0.001 - 10.45 51.08 1984 0.002 0.002 0.000 0.134 5.032 2.533 2.820 3.039 2.550 2.575 0.096 0.001 - 10.45 51.08 1985 0.001 0.001 0.009 0.374 1.829 3.210 2.428 2.484 1.057 0.177 0.505 0.002 - 10.45 51.08 1986 0.002 0.001 0.024 0.420 3.955 2.543 2.475 2.991 2.133 1.015 0.312 0.001 - 10.45 51.08 1987 0.002 0.002 0.005 0.150 2.897 6.123 3.553 3.511 3.321 0.880 1.312 0.001 - 10.45 51.08 1988 0.001 0.002 0.022 0.279 1.225 2.630 3.508 1.025 1.239 0.755 0.780 0.002 - 10.45 51.08 1989 0.001 0.001 0.157 1.607 1.693 3.010 2.542 1.300 2.046 1.414 0.857 0.001 - 10.45 51.08 1990 0.001 0.162 0.554 2.086 0.734 4.183 1.215 2.237 2.637 0.512 0.003 0.001 - 10.45 51.08 1991 0.001 0.001 0.276 0.528 1.650 3.416 1.144 3.025 1.014 0.866 0.319 0.001 - 10.45 51.08 1992 0.001 0.001 0.583 0.316 1.308 3.947 3.590 1.835 1.270 2.045 0.201 0.001 - 10.45 51.08 1993 0.002 0.004 0.107 0.412 3.707 3.406 4.136 2.400 2.731 1.677 0.186 0.002 - 10.45 51.08 1994 0.002 0.002 0.389 1.315 4.594 2.568 4.485 4.646 2.442 1.118 0.387 0.001 - 10.45 51.08 1995 0.002 0.003 0.087 1.137 3.381 4.255 4.876 2.227 3.484 0.619 0.652 0.001 - 10.45 51.08 1996 0.000 0.002 0.007 0.620 4.383 3.733 3.912 4.299 1.740 1.958 1.232 0.001 - 10.45 51.08 1997 0.001 0.054 0.787 0.826 2.564 1.665 6.110 2.501 0.682 1.884 0.203 0.001 - 10.45 51.08 1998 0.001 0.075 0.511 2.128 2.154 3.321 3.899 1.510 3.688 3.270 0.003 0.000 - 10.45 51.08 1999 0.001 0.002 0.245 0.778 3.356 4.078 3.500 2.660 1.321 0.779 0.485 0.001 - 10.45 51.08 2000 0.001 0.018 0.582 1.126 1.498 2.220 3.335 3.086 3.206 1.405 0.236 0.001 - 10.45 51.08 2001 0.001 0.001 0.710 1.020 1.569 4.567 4.141 1.059 2.952 1.330 0.826 0.001 - 10.45 51.08 2002 0.001 0.463 1.190 1.476 3.994 3.029 3.225 4.009 1.769 2.215 0.003 0.002 - 10.45 51.08 2003 0.001 0.001 0.026 0.352 3.258 4.171 2.323 1.228 2.307 1.377 0.109 0.001 - 10.45 51.08 2004 0.001 0.005 0.220 1.345 4.271 2.622 3.670 1.799 1.675 0.519 0.001 0.000 - 10.45 51.08 2005 0.001 0.002 0.128 1.277 2.379 2.589 4.330 2.976 3.624 0.851 0.492 0.001 - 10.45 51.08 2006 0.001 0.001 0.065 1.566 2.923 3.618 2.334 5.914 0.599 2.331 0.934 0.001 - 10.45 51.08 2007 0.002 0.001 0.018 0.212 5.226 4.456 5.417 3.621 2.955 0.435 1.163 0.001 - 10.45 51.08 2008 0.001 0.044 0.763 2.095 1.009 3.396 3.201 1.834 2.026 2.413 0.059 0.001 - 10.45 51.08 2009 0.000 0.002 0.026 1.920 4.122 3.131 4.078 0.883 2.458 2.214 0.921 0.002 - 10.45 51.08 2010 0.001 0.001 0.222 0.444 4.353 0.767 5.402 6.849 1.798 0.570 0.264 0.002 - 10.45 51.08 2011 0.001 0.002 0.168 1.228 0.418 4.761 3.915 4.601 1.698 1.662 0.000 0.001 - 10.45 51.08 2012 0.002 0.000 0.028 0.464 1.875 5.947 5.984 2.637 1.521 0.932 0.365 0.001 diff --git a/rLPJGUESS/inst/extdata/outputsForTests/run_iffire/outDirectory/miso.out b/rLPJGUESS/inst/extdata/outputsForTests/run_iffire/outDirectory/miso.out deleted file mode 100644 index 8edc368..0000000 --- a/rLPJGUESS/inst/extdata/outputsForTests/run_iffire/outDirectory/miso.out +++ /dev/null @@ -1,63 +0,0 @@ - Lon Lat Year Jan Feb Mar Apr May Jun Jul Aug Sep Oct Nov Dec - 10.45 51.08 1951 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1952 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1953 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1954 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1955 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1956 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1957 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1958 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1959 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1960 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1961 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1962 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1963 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1964 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1965 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1966 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1967 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1968 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1969 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1970 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1971 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1972 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1973 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1974 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1975 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1976 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1977 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1978 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1979 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1980 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1981 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1982 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1983 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1984 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1985 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1986 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1987 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1988 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1989 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1990 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1991 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1992 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1993 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1994 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1995 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1996 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1997 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1998 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1999 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 2000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 2001 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 2002 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 2003 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 2004 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 2005 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 2006 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 2007 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 2008 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 2009 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 2010 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 2011 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 2012 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 diff --git a/rLPJGUESS/inst/extdata/outputsForTests/run_iffire/outDirectory/mlai.out b/rLPJGUESS/inst/extdata/outputsForTests/run_iffire/outDirectory/mlai.out deleted file mode 100644 index c37ff76..0000000 --- a/rLPJGUESS/inst/extdata/outputsForTests/run_iffire/outDirectory/mlai.out +++ /dev/null @@ -1,63 +0,0 @@ - Lon Lat Year Jan Feb Mar Apr May Jun Jul Aug Sep Oct Nov Dec - 10.45 51.08 1951 0.000 0.000 0.131 0.791 2.426 2.712 2.712 2.712 2.712 2.712 1.748 0.000 - 10.45 51.08 1952 0.000 0.000 0.057 1.257 2.584 2.584 2.584 2.584 2.584 2.584 0.970 0.000 - 10.45 51.08 1953 0.000 0.008 0.239 1.765 2.657 2.657 2.657 2.657 2.657 2.657 0.345 0.000 - 10.45 51.08 1954 0.000 0.000 0.072 0.686 2.259 2.771 2.771 2.771 2.771 2.771 2.207 0.000 - 10.45 51.08 1955 0.000 0.000 0.068 0.693 2.404 2.596 2.596 2.596 2.596 2.596 1.644 0.000 - 10.45 51.08 1956 0.001 0.000 0.030 0.543 2.129 2.618 2.618 2.618 2.618 2.618 1.658 0.000 - 10.45 51.08 1957 0.008 0.034 0.558 1.736 2.636 2.648 2.648 2.648 2.648 2.623 0.039 0.000 - 10.45 51.08 1958 0.000 0.155 0.435 0.708 2.362 2.737 2.737 2.737 2.737 2.737 1.492 0.000 - 10.45 51.08 1959 0.000 0.004 0.402 1.569 2.354 2.354 2.354 2.354 2.354 2.346 0.112 0.000 - 10.45 51.08 1960 0.000 0.001 0.177 0.835 2.137 2.530 2.530 2.530 2.530 2.530 1.639 0.000 - 10.45 51.08 1961 0.000 0.008 0.503 1.824 2.627 2.627 2.627 2.627 2.627 2.580 0.000 0.000 - 10.45 51.08 1962 0.000 0.004 0.037 0.564 2.291 2.709 2.709 2.709 2.709 2.709 1.355 0.000 - 10.45 51.08 1963 0.000 0.000 0.047 0.702 2.423 2.781 2.781 2.781 2.781 2.781 2.039 0.000 - 10.45 51.08 1964 0.000 0.000 0.005 0.613 2.588 2.853 2.853 2.853 2.853 2.853 0.666 0.009 - 10.45 51.08 1965 0.019 0.000 0.027 0.688 2.162 2.943 2.943 2.943 2.943 2.943 1.373 0.001 - 10.45 51.08 1966 0.003 0.116 0.478 1.129 2.456 2.501 2.501 2.501 2.501 2.501 0.542 0.001 - 10.45 51.08 1967 0.001 0.068 0.386 0.812 2.190 2.652 2.652 2.652 2.652 2.652 1.557 0.001 - 10.45 51.08 1968 0.001 0.002 0.104 1.324 2.726 2.740 2.740 2.740 2.740 2.740 0.996 0.001 - 10.45 51.08 1969 0.001 0.001 0.001 0.440 2.309 2.838 2.838 2.838 2.838 2.838 2.649 0.001 - 10.45 51.08 1970 0.001 0.001 0.015 0.320 2.079 2.884 2.884 2.884 2.884 2.884 2.884 0.179 - 10.45 51.08 1971 0.001 0.002 0.055 0.757 2.449 2.931 2.931 2.931 2.931 2.931 2.052 0.001 - 10.45 51.08 1972 0.003 0.001 0.162 1.062 2.605 2.996 2.996 2.996 2.996 2.996 1.798 0.001 - 10.45 51.08 1973 0.001 0.001 0.054 0.411 2.146 3.035 3.035 3.035 3.035 3.035 1.619 0.001 - 10.45 51.08 1974 0.004 0.124 0.462 1.787 2.878 3.054 3.054 3.054 3.054 3.054 0.001 0.005 - 10.45 51.08 1975 0.001 0.003 0.078 0.557 2.537 3.064 3.064 3.064 3.064 3.064 1.329 0.001 - 10.45 51.08 1976 0.001 0.001 0.023 0.904 2.602 3.062 3.062 3.062 3.062 3.062 2.042 0.001 - 10.45 51.08 1977 0.001 0.005 0.575 1.279 2.802 3.073 3.073 3.073 3.073 3.073 1.100 0.001 - 10.45 51.08 1978 0.001 0.002 0.227 0.970 2.507 3.066 3.066 3.066 3.066 3.066 1.431 0.002 - 10.45 51.08 1979 0.006 0.001 0.017 0.479 1.937 3.070 3.070 3.070 3.070 3.070 1.331 0.006 - 10.45 51.08 1980 0.011 0.002 0.030 0.564 1.830 3.049 3.049 3.049 3.049 3.049 0.713 0.016 - 10.45 51.08 1981 0.041 0.003 0.454 1.978 2.721 2.802 2.802 2.802 2.802 2.802 0.091 0.002 - 10.45 51.08 1982 0.002 0.002 0.021 0.660 2.026 2.868 2.868 2.868 2.868 2.868 2.760 0.002 - 10.45 51.08 1983 0.002 0.005 0.215 1.010 2.734 2.868 2.868 2.868 2.868 2.868 1.417 0.002 - 10.45 51.08 1984 0.002 0.002 0.009 0.376 2.072 2.918 2.918 2.918 2.918 2.918 1.946 0.002 - 10.45 51.08 1985 0.003 0.002 0.014 1.022 2.422 2.901 2.901 2.901 2.901 2.901 1.065 0.003 - 10.45 51.08 1986 0.006 0.002 0.028 0.359 2.563 2.963 2.963 2.963 2.963 2.963 2.664 0.002 - 10.45 51.08 1987 0.002 0.002 0.011 0.724 2.696 2.995 2.995 2.995 2.995 2.995 2.197 0.002 - 10.45 51.08 1988 0.002 0.002 0.019 0.665 2.675 3.013 3.013 3.013 3.013 3.013 2.110 0.002 - 10.45 51.08 1989 0.002 0.003 0.301 1.509 2.881 3.045 3.045 3.045 3.045 3.045 1.004 0.002 - 10.45 51.08 1990 0.002 0.084 1.087 2.250 3.111 3.120 3.120 3.120 3.120 2.479 0.002 0.002 - 10.45 51.08 1991 0.002 0.002 0.523 1.868 2.908 3.188 3.188 3.188 3.188 3.188 0.733 0.002 - 10.45 51.08 1992 0.002 0.004 0.274 0.873 2.816 3.207 3.207 3.207 3.207 3.207 0.323 0.002 - 10.45 51.08 1993 0.003 0.019 0.453 1.604 3.180 3.180 3.180 3.180 3.180 3.180 0.728 0.002 - 10.45 51.08 1994 0.002 0.003 0.424 1.364 3.149 3.202 3.202 3.202 3.202 3.202 1.067 0.002 - 10.45 51.08 1995 0.002 0.005 0.205 1.152 3.030 3.195 3.195 3.195 3.195 3.195 1.675 0.002 - 10.45 51.08 1996 0.002 0.002 0.013 0.662 2.852 3.180 3.180 3.180 3.180 3.180 2.438 0.002 - 10.45 51.08 1997 0.002 0.031 0.630 1.243 2.833 3.155 3.155 3.155 3.155 3.155 0.948 0.002 - 10.45 51.08 1998 0.002 0.129 0.811 2.083 2.980 2.980 2.980 2.980 2.980 2.592 0.002 0.002 - 10.45 51.08 1999 0.002 0.008 0.304 1.454 2.910 2.991 2.991 2.991 2.991 2.991 0.994 0.002 - 10.45 51.08 2000 0.002 0.014 0.404 1.390 3.043 3.043 3.043 3.043 3.043 3.043 0.911 0.002 - 10.45 51.08 2001 0.002 0.004 0.291 1.214 2.860 3.060 3.060 3.060 3.060 3.060 1.423 0.002 - 10.45 51.08 2002 0.002 0.361 1.146 2.012 3.061 3.086 3.086 3.086 3.086 2.382 0.002 0.002 - 10.45 51.08 2003 0.002 0.002 0.142 1.089 3.016 3.075 3.075 3.075 3.075 3.075 0.412 0.002 - 10.45 51.08 2004 0.002 0.112 0.706 1.866 3.091 3.091 3.091 3.091 3.091 3.089 0.002 0.002 - 10.45 51.08 2005 0.002 0.002 0.210 1.588 3.135 3.160 3.160 3.160 3.160 3.160 1.054 0.002 - 10.45 51.08 2006 0.002 0.002 0.048 1.055 3.011 3.207 3.207 3.207 3.207 3.207 1.925 0.002 - 10.45 51.08 2007 0.002 0.002 0.026 1.369 3.222 3.231 3.231 3.231 3.231 3.231 1.503 0.002 - 10.45 51.08 2008 0.002 0.114 0.704 1.393 3.075 3.248 3.248 3.248 3.248 3.248 0.866 0.002 - 10.45 51.08 2009 0.002 0.002 0.038 1.703 3.252 3.252 3.252 3.252 3.252 3.252 1.085 0.002 - 10.45 51.08 2010 0.002 0.002 0.226 1.598 3.189 3.250 3.250 3.250 3.250 3.250 1.084 0.002 - 10.45 51.08 2011 0.002 0.012 0.385 2.245 3.242 3.242 3.242 3.242 3.242 3.242 0.217 0.002 - 10.45 51.08 2012 0.002 0.002 0.407 1.617 3.271 3.284 3.284 3.284 3.284 3.284 0.877 0.002 diff --git a/rLPJGUESS/inst/extdata/outputsForTests/run_iffire/outDirectory/mmon.out b/rLPJGUESS/inst/extdata/outputsForTests/run_iffire/outDirectory/mmon.out deleted file mode 100644 index 8edc368..0000000 --- a/rLPJGUESS/inst/extdata/outputsForTests/run_iffire/outDirectory/mmon.out +++ /dev/null @@ -1,63 +0,0 @@ - Lon Lat Year Jan Feb Mar Apr May Jun Jul Aug Sep Oct Nov Dec - 10.45 51.08 1951 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1952 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1953 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1954 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1955 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1956 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1957 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1958 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1959 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1960 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1961 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1962 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1963 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1964 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1965 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1966 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1967 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1968 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1969 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1970 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1971 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1972 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1973 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1974 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1975 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1976 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1977 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1978 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1979 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1980 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1981 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1982 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1983 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1984 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1985 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1986 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1987 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1988 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1989 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1990 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1991 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1992 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1993 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1994 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1995 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1996 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1997 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1998 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1999 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 2000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 2001 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 2002 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 2003 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 2004 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 2005 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 2006 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 2007 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 2008 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 2009 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 2010 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 2011 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 2012 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 diff --git a/rLPJGUESS/inst/extdata/outputsForTests/run_iffire/outDirectory/mnee.out b/rLPJGUESS/inst/extdata/outputsForTests/run_iffire/outDirectory/mnee.out deleted file mode 100644 index 24406e2..0000000 --- a/rLPJGUESS/inst/extdata/outputsForTests/run_iffire/outDirectory/mnee.out +++ /dev/null @@ -1,63 +0,0 @@ - Lon Lat Year Jan Feb Mar Apr May Jun Jul Aug Sep Oct Nov Dec - 10.45 51.08 1951 -0.020 -0.016 -0.015 -0.000 0.051 0.074 0.042 0.023 0.003 0.015 -0.015 -0.018 - 10.45 51.08 1952 -0.015 -0.007 -0.018 0.005 0.072 0.057 -0.010 -0.031 0.018 0.010 -0.011 -0.008 - 10.45 51.08 1953 -0.008 -0.010 -0.018 0.037 0.041 0.026 0.029 0.016 0.002 -0.012 -0.025 -0.022 - 10.45 51.08 1954 -0.007 -0.004 -0.022 -0.004 0.059 0.027 0.037 0.027 0.002 0.005 -0.013 -0.020 - 10.45 51.08 1955 -0.007 -0.009 -0.008 -0.005 0.057 0.047 0.013 0.015 0.004 0.000 -0.012 -0.015 - 10.45 51.08 1956 -0.017 -0.001 -0.014 -0.010 0.055 0.042 0.040 0.037 0.013 -0.006 -0.012 -0.019 - 10.45 51.08 1957 -0.010 -0.023 -0.015 0.031 0.065 0.042 -0.007 0.030 0.012 0.006 -0.026 -0.012 - 10.45 51.08 1958 -0.014 -0.019 -0.006 -0.001 0.043 0.043 0.041 0.019 -0.002 -0.003 -0.014 -0.017 - 10.45 51.08 1959 -0.015 -0.007 -0.023 0.015 0.054 0.043 -0.034 -0.013 0.016 0.003 -0.019 -0.012 - 10.45 51.08 1960 -0.014 -0.008 -0.019 -0.012 0.047 0.040 0.027 0.011 0.006 -0.001 -0.017 -0.014 - 10.45 51.08 1961 -0.008 -0.020 -0.025 0.015 0.059 0.060 0.002 0.015 -0.029 -0.032 -0.027 -0.013 - 10.45 51.08 1962 -0.017 -0.012 -0.007 -0.017 0.044 0.046 0.038 0.008 0.016 -0.015 -0.013 -0.006 - 10.45 51.08 1963 -0.002 -0.002 -0.015 -0.010 0.054 0.042 0.031 0.022 0.010 -0.000 -0.015 -0.007 - 10.45 51.08 1964 -0.004 -0.009 -0.010 -0.011 0.068 0.041 0.018 0.005 0.001 -0.006 -0.023 -0.015 - 10.45 51.08 1965 -0.015 -0.006 -0.013 -0.016 0.048 0.060 0.032 0.042 0.020 -0.005 -0.012 -0.016 - 10.45 51.08 1966 -0.007 -0.015 -0.019 0.003 0.052 0.027 0.041 0.019 0.005 -0.027 -0.015 -0.014 - 10.45 51.08 1967 -0.014 -0.020 -0.023 -0.009 0.037 0.053 0.015 -0.012 0.001 -0.020 -0.019 -0.011 - 10.45 51.08 1968 -0.008 -0.014 -0.015 -0.006 0.052 0.042 0.013 -0.004 -0.006 -0.012 -0.020 -0.006 - 10.45 51.08 1969 -0.011 -0.008 -0.006 -0.019 0.043 0.062 0.008 -0.037 0.020 -0.008 -0.021 -0.004 - 10.45 51.08 1970 -0.005 -0.006 -0.011 -0.019 0.036 0.040 0.020 0.018 0.009 -0.015 -0.017 -0.015 - 10.45 51.08 1971 -0.009 -0.019 -0.014 -0.018 0.022 0.041 0.038 -0.032 0.009 -0.008 -0.015 -0.020 - 10.45 51.08 1972 -0.008 -0.013 -0.025 -0.010 0.052 0.076 0.013 0.031 0.015 -0.001 -0.017 -0.015 - 10.45 51.08 1973 -0.010 -0.016 -0.022 -0.022 0.041 0.033 -0.004 0.007 -0.011 -0.002 -0.015 -0.010 - 10.45 51.08 1974 -0.024 -0.023 -0.014 0.010 0.062 0.068 0.051 0.003 0.002 -0.012 -0.025 -0.025 - 10.45 51.08 1975 -0.032 -0.017 -0.025 -0.010 0.048 0.050 0.019 -0.015 -0.013 -0.023 -0.016 -0.016 - 10.45 51.08 1976 -0.021 -0.008 -0.015 -0.016 0.050 0.055 -0.032 0.026 -0.011 -0.020 -0.018 -0.014 - 10.45 51.08 1977 -0.011 -0.022 -0.025 0.005 0.076 0.029 0.043 0.021 0.008 -0.005 -0.022 -0.015 - 10.45 51.08 1978 -0.017 -0.008 -0.026 -0.008 0.043 0.029 0.048 0.015 0.010 -0.002 -0.022 -0.014 - 10.45 51.08 1979 -0.004 -0.005 -0.020 -0.019 0.026 0.016 0.040 0.019 0.003 -0.011 -0.014 -0.024 - 10.45 51.08 1980 -0.007 -0.019 -0.022 -0.020 0.043 0.049 0.036 -0.002 -0.000 -0.005 -0.022 -0.014 - 10.45 51.08 1981 -0.009 -0.009 -0.016 0.006 0.053 0.032 0.004 0.014 0.006 -0.008 -0.025 -0.008 - 10.45 51.08 1982 -0.007 -0.011 -0.025 -0.019 0.029 0.004 -0.008 -0.021 -0.025 -0.023 -0.022 -0.020 - 10.45 51.08 1983 -0.029 -0.010 -0.025 0.006 0.050 0.050 -0.004 -0.004 0.000 -0.019 -0.018 -0.013 - 10.45 51.08 1984 -0.023 -0.011 -0.015 -0.020 0.025 0.059 0.039 0.013 0.000 -0.006 -0.020 -0.015 - 10.45 51.08 1985 -0.004 -0.007 -0.019 -0.016 0.034 0.042 0.044 0.017 0.005 -0.033 -0.013 -0.024 - 10.45 51.08 1986 -0.012 -0.003 -0.018 -0.017 0.036 0.053 0.010 -0.001 0.026 -0.002 -0.016 -0.019 - 10.45 51.08 1987 -0.006 -0.007 -0.009 -0.011 0.050 0.062 0.030 0.031 -0.004 -0.005 -0.020 -0.015 - 10.45 51.08 1988 -0.028 -0.019 -0.019 -0.017 0.047 0.030 0.043 0.004 -0.006 -0.022 -0.021 -0.019 - 10.45 51.08 1989 -0.024 -0.020 -0.028 -0.005 0.089 0.063 0.017 0.002 -0.008 -0.007 -0.021 -0.018 - 10.45 51.08 1990 -0.020 -0.032 -0.012 0.018 0.091 0.055 0.053 -0.010 0.005 -0.014 -0.032 -0.014 - 10.45 51.08 1991 -0.024 -0.007 -0.031 0.011 0.049 0.065 0.004 0.010 -0.003 -0.017 -0.022 -0.014 - 10.45 51.08 1992 -0.020 -0.018 -0.028 -0.007 0.063 0.023 0.031 -0.022 0.021 -0.018 -0.026 -0.018 - 10.45 51.08 1993 -0.022 -0.007 -0.017 0.013 0.041 0.056 0.050 0.027 0.013 -0.013 -0.014 -0.017 - 10.45 51.08 1994 -0.024 -0.013 -0.025 0.005 0.063 0.061 -0.000 -0.011 0.022 -0.006 -0.025 -0.024 - 10.45 51.08 1995 -0.014 -0.028 -0.024 -0.005 0.061 0.057 0.023 0.006 0.010 -0.007 -0.021 -0.007 - 10.45 51.08 1996 -0.005 -0.006 -0.014 -0.015 0.039 0.051 0.060 0.018 0.010 -0.006 -0.020 -0.010 - 10.45 51.08 1997 -0.006 -0.023 -0.025 0.001 0.049 0.047 0.033 0.001 0.017 -0.016 -0.019 -0.017 - 10.45 51.08 1998 -0.028 -0.022 -0.020 0.019 0.069 0.046 0.034 -0.000 0.013 -0.011 -0.019 -0.014 - 10.45 51.08 1999 -0.026 -0.012 -0.025 0.002 0.068 0.063 0.025 0.008 -0.015 -0.024 -0.019 -0.019 - 10.45 51.08 2000 -0.016 -0.023 -0.024 0.003 0.043 0.025 0.023 0.011 0.003 -0.009 -0.031 -0.027 - 10.45 51.08 2001 -0.017 -0.024 -0.022 -0.004 0.077 0.052 0.045 -0.029 -0.006 -0.014 -0.023 -0.014 - 10.45 51.08 2002 -0.014 -0.034 -0.012 0.017 0.053 0.047 0.016 -0.002 0.001 -0.013 -0.029 -0.013 - 10.45 51.08 2003 -0.015 -0.008 -0.027 -0.004 0.042 0.054 0.004 -0.035 0.013 -0.015 -0.027 -0.018 - 10.45 51.08 2004 -0.016 -0.024 -0.013 0.029 0.070 0.059 0.050 -0.012 0.008 -0.007 -0.032 -0.014 - 10.45 51.08 2005 -0.025 -0.008 -0.016 0.010 0.055 0.048 0.022 0.032 0.011 0.004 -0.023 -0.016 - 10.45 51.08 2006 -0.008 -0.010 -0.012 -0.006 0.067 0.067 0.005 0.012 0.014 -0.013 -0.031 -0.031 - 10.45 51.08 2007 -0.037 -0.026 -0.040 0.010 0.065 0.054 0.041 0.044 0.019 -0.006 -0.020 -0.018 - 10.45 51.08 2008 -0.029 -0.024 -0.021 0.007 0.072 0.049 0.030 -0.013 -0.002 -0.005 -0.027 -0.016 - 10.45 51.08 2009 -0.008 -0.013 -0.030 0.011 0.072 0.054 0.027 0.004 0.002 -0.018 -0.034 -0.018 - 10.45 51.08 2010 -0.005 -0.009 -0.022 0.013 0.043 0.065 0.004 0.019 0.017 -0.002 -0.026 -0.005 - 10.45 51.08 2011 -0.019 -0.016 -0.019 0.034 0.066 0.037 0.044 0.006 0.015 -0.011 -0.024 -0.025 - 10.45 51.08 2012 -0.026 -0.009 -0.029 -0.003 0.055 0.051 0.040 0.015 0.007 -0.007 -0.026 -0.018 diff --git a/rLPJGUESS/inst/extdata/outputsForTests/run_iffire/outDirectory/mnpp.out b/rLPJGUESS/inst/extdata/outputsForTests/run_iffire/outDirectory/mnpp.out deleted file mode 100644 index c38f3ba..0000000 --- a/rLPJGUESS/inst/extdata/outputsForTests/run_iffire/outDirectory/mnpp.out +++ /dev/null @@ -1,63 +0,0 @@ - Lon Lat Year Jan Feb Mar Apr May Jun Jul Aug Sep Oct Nov Dec - 10.45 51.08 1951 -0.009 -0.008 -0.007 0.025 0.102 0.120 0.109 0.079 0.057 0.039 -0.002 -0.010 - 10.45 51.08 1952 -0.007 -0.006 -0.009 0.040 0.118 0.121 0.092 0.059 0.049 0.025 -0.002 -0.006 - 10.45 51.08 1953 -0.006 -0.007 -0.001 0.081 0.108 0.092 0.097 0.088 0.064 0.029 -0.009 -0.011 - 10.45 51.08 1954 -0.005 -0.004 -0.010 0.017 0.112 0.109 0.090 0.079 0.050 0.030 0.001 -0.012 - 10.45 51.08 1955 -0.005 -0.005 -0.006 0.015 0.110 0.110 0.080 0.067 0.055 0.030 -0.001 -0.009 - 10.45 51.08 1956 -0.008 -0.001 -0.009 0.009 0.106 0.095 0.095 0.091 0.062 0.027 -0.002 -0.010 - 10.45 51.08 1957 -0.007 -0.010 0.006 0.061 0.110 0.118 0.076 0.085 0.053 0.028 -0.012 -0.007 - 10.45 51.08 1958 -0.007 -0.009 -0.004 0.013 0.094 0.098 0.109 0.090 0.060 0.027 -0.004 -0.011 - 10.45 51.08 1959 -0.006 -0.005 0.000 0.055 0.115 0.114 0.081 0.071 0.085 0.042 -0.008 -0.007 - 10.45 51.08 1960 -0.007 -0.005 -0.006 0.018 0.092 0.120 0.111 0.080 0.054 0.023 -0.001 -0.007 - 10.45 51.08 1961 -0.006 -0.010 0.000 0.047 0.094 0.115 0.095 0.085 0.054 0.028 -0.010 -0.008 - 10.45 51.08 1962 -0.009 -0.006 -0.006 0.009 0.087 0.121 0.105 0.094 0.069 0.026 -0.001 -0.005 - 10.45 51.08 1963 -0.002 -0.002 -0.009 0.015 0.107 0.114 0.112 0.084 0.061 0.025 0.000 -0.004 - 10.45 51.08 1964 -0.004 -0.006 -0.007 0.014 0.120 0.135 0.113 0.084 0.067 0.022 -0.012 -0.008 - 10.45 51.08 1965 -0.009 -0.005 -0.009 0.011 0.089 0.115 0.101 0.106 0.065 0.029 -0.004 -0.011 - 10.45 51.08 1966 -0.004 -0.007 -0.003 0.031 0.122 0.111 0.097 0.087 0.056 0.023 -0.007 -0.008 - 10.45 51.08 1967 -0.008 -0.008 -0.002 0.015 0.102 0.108 0.117 0.080 0.050 0.026 -0.002 -0.007 - 10.45 51.08 1968 -0.006 -0.007 -0.007 0.032 0.101 0.116 0.115 0.080 0.049 0.020 -0.006 -0.005 - 10.45 51.08 1969 -0.007 -0.004 -0.006 -0.001 0.094 0.119 0.108 0.071 0.064 0.029 0.000 -0.003 - 10.45 51.08 1970 -0.005 -0.006 -0.008 -0.003 0.080 0.127 0.114 0.081 0.067 0.015 -0.003 -0.008 - 10.45 51.08 1971 -0.007 -0.008 -0.008 0.013 0.087 0.104 0.133 0.081 0.071 0.031 -0.002 -0.012 - 10.45 51.08 1972 -0.005 -0.008 -0.009 0.019 0.092 0.132 0.090 0.086 0.055 0.022 -0.002 -0.009 - 10.45 51.08 1973 -0.007 -0.008 -0.011 -0.002 0.093 0.117 0.102 0.098 0.055 0.021 -0.005 -0.008 - 10.45 51.08 1974 -0.012 -0.010 -0.000 0.047 0.103 0.120 0.108 0.080 0.064 0.008 -0.015 -0.015 - 10.45 51.08 1975 -0.014 -0.008 -0.012 0.008 0.098 0.108 0.107 0.091 0.053 0.012 -0.005 -0.009 - 10.45 51.08 1976 -0.011 -0.007 -0.009 0.012 0.109 0.122 0.090 0.104 0.047 0.019 -0.005 -0.008 - 10.45 51.08 1977 -0.009 -0.011 -0.004 0.021 0.125 0.088 0.105 0.069 0.049 0.023 -0.006 -0.010 - 10.45 51.08 1978 -0.009 -0.006 -0.010 0.017 0.085 0.112 0.109 0.085 0.050 0.023 -0.010 -0.010 - 10.45 51.08 1979 -0.004 -0.005 -0.012 -0.000 0.070 0.107 0.099 0.091 0.058 0.022 -0.006 -0.015 - 10.45 51.08 1980 -0.005 -0.011 -0.011 -0.000 0.082 0.120 0.091 0.090 0.059 0.023 -0.014 -0.010 - 10.45 51.08 1981 -0.006 -0.006 -0.000 0.041 0.097 0.100 0.090 0.079 0.060 0.018 -0.013 -0.005 - 10.45 51.08 1982 -0.007 -0.006 -0.013 0.010 0.083 0.108 0.096 0.083 0.058 0.020 -0.000 -0.010 - 10.45 51.08 1983 -0.013 -0.005 -0.010 0.027 0.094 0.118 0.108 0.082 0.062 0.021 -0.004 -0.009 - 10.45 51.08 1984 -0.009 -0.007 -0.010 -0.001 0.060 0.110 0.102 0.079 0.044 0.023 -0.007 -0.009 - 10.45 51.08 1985 -0.004 -0.005 -0.011 0.016 0.094 0.107 0.124 0.092 0.060 0.017 -0.005 -0.015 - 10.45 51.08 1986 -0.008 -0.002 -0.012 -0.003 0.096 0.112 0.105 0.083 0.059 0.029 -0.002 -0.011 - 10.45 51.08 1987 -0.004 -0.006 -0.008 0.017 0.091 0.101 0.108 0.083 0.050 0.021 -0.008 -0.011 - 10.45 51.08 1988 -0.014 -0.010 -0.011 0.008 0.114 0.105 0.112 0.093 0.054 0.021 -0.007 -0.013 - 10.45 51.08 1989 -0.012 -0.011 -0.009 0.024 0.144 0.128 0.105 0.087 0.051 0.026 -0.007 -0.014 - 10.45 51.08 1990 -0.012 -0.015 0.012 0.042 0.155 0.104 0.123 0.082 0.049 0.021 -0.017 -0.010 - 10.45 51.08 1991 -0.012 -0.006 -0.008 0.040 0.082 0.123 0.104 0.078 0.063 0.024 -0.011 -0.010 - 10.45 51.08 1992 -0.011 -0.012 -0.013 0.015 0.125 0.098 0.100 0.066 0.063 0.005 -0.017 -0.011 - 10.45 51.08 1993 -0.015 -0.006 -0.006 0.046 0.120 0.111 0.103 0.091 0.049 0.011 -0.009 -0.014 - 10.45 51.08 1994 -0.014 -0.008 -0.010 0.027 0.118 0.118 0.088 0.072 0.058 0.014 -0.011 -0.016 - 10.45 51.08 1995 -0.010 -0.015 -0.011 0.018 0.104 0.100 0.100 0.089 0.045 0.021 -0.010 -0.007 - 10.45 51.08 1996 -0.005 -0.006 -0.010 0.009 0.076 0.117 0.109 0.077 0.040 0.017 -0.007 -0.007 - 10.45 51.08 1997 -0.006 -0.014 -0.006 0.019 0.102 0.121 0.096 0.077 0.071 0.011 -0.011 -0.012 - 10.45 51.08 1998 -0.015 -0.014 -0.003 0.048 0.124 0.110 0.093 0.078 0.044 0.006 -0.012 -0.012 - 10.45 51.08 1999 -0.014 -0.008 -0.011 0.032 0.124 0.122 0.094 0.083 0.058 0.012 -0.007 -0.013 - 10.45 51.08 2000 -0.010 -0.013 -0.010 0.034 0.126 0.107 0.082 0.087 0.047 0.021 -0.013 -0.015 - 10.45 51.08 2001 -0.011 -0.012 -0.011 0.016 0.132 0.108 0.113 0.071 0.041 0.024 -0.010 -0.010 - 10.45 51.08 2002 -0.012 -0.015 0.002 0.038 0.102 0.110 0.081 0.065 0.053 0.006 -0.018 -0.010 - 10.45 51.08 2003 -0.010 -0.005 -0.014 0.024 0.109 0.132 0.095 0.076 0.063 0.006 -0.016 -0.012 - 10.45 51.08 2004 -0.009 -0.014 -0.002 0.058 0.106 0.120 0.110 0.082 0.068 0.025 -0.017 -0.010 - 10.45 51.08 2005 -0.014 -0.007 -0.009 0.042 0.102 0.123 0.102 0.083 0.062 0.032 -0.005 -0.011 - 10.45 51.08 2006 -0.006 -0.008 -0.011 0.020 0.124 0.125 0.101 0.071 0.067 0.022 -0.012 -0.018 - 10.45 51.08 2007 -0.020 -0.015 -0.021 0.047 0.125 0.116 0.099 0.093 0.056 0.015 -0.011 -0.013 - 10.45 51.08 2008 -0.018 -0.012 -0.006 0.024 0.131 0.125 0.102 0.074 0.045 0.018 -0.016 -0.012 - 10.45 51.08 2009 -0.007 -0.009 -0.017 0.051 0.119 0.104 0.097 0.085 0.054 0.004 -0.022 -0.012 - 10.45 51.08 2010 -0.005 -0.008 -0.010 0.046 0.078 0.133 0.092 0.066 0.052 0.016 -0.014 -0.005 - 10.45 51.08 2011 -0.013 -0.011 -0.007 0.078 0.133 0.114 0.099 0.065 0.061 0.019 -0.013 -0.017 - 10.45 51.08 2012 -0.014 -0.008 -0.006 0.025 0.117 0.101 0.097 0.084 0.059 0.020 -0.015 -0.014 diff --git a/rLPJGUESS/inst/extdata/outputsForTests/run_iffire/outDirectory/mpet.out b/rLPJGUESS/inst/extdata/outputsForTests/run_iffire/outDirectory/mpet.out deleted file mode 100644 index 59848e4..0000000 --- a/rLPJGUESS/inst/extdata/outputsForTests/run_iffire/outDirectory/mpet.out +++ /dev/null @@ -1,63 +0,0 @@ - Lon Lat Year Jan Feb Mar Apr May Jun Jul Aug Sep Oct Nov Dec - 10.45 51.08 1951 3.350 6.436 15.418 55.837 79.761 106.479 111.609 91.337 61.351 29.058 8.193 2.957 - 10.45 51.08 1952 3.382 5.705 14.617 60.840 90.271 107.708 123.085 94.193 43.441 23.801 7.081 2.523 - 10.45 51.08 1953 2.872 6.051 29.637 70.306 102.860 90.721 107.557 94.200 60.540 28.790 5.839 3.055 - 10.45 51.08 1954 2.774 4.973 16.847 43.237 96.108 105.335 80.238 83.748 54.000 28.511 9.167 2.829 - 10.45 51.08 1955 3.470 5.653 14.910 46.380 87.694 96.579 89.131 75.304 54.875 26.913 7.025 2.987 - 10.45 51.08 1956 3.745 3.591 16.844 37.021 98.524 82.909 101.095 81.926 55.898 27.774 6.763 2.986 - 10.45 51.08 1957 3.726 7.458 28.078 58.011 84.710 125.497 103.939 83.275 49.012 25.450 5.188 2.807 - 10.45 51.08 1958 3.574 8.032 13.606 35.386 89.569 94.972 110.203 98.990 62.963 28.485 6.915 2.944 - 10.45 51.08 1959 4.435 7.505 25.564 63.770 94.755 114.287 127.016 87.076 72.877 35.114 5.684 3.149 - 10.45 51.08 1960 3.652 6.672 16.631 46.999 87.491 120.302 102.177 84.171 51.341 25.936 9.437 3.032 - 10.45 51.08 1961 3.262 9.375 25.465 50.442 72.930 110.160 95.297 84.182 66.997 30.049 4.842 2.861 - 10.45 51.08 1962 4.054 6.384 14.502 43.695 69.812 108.604 93.272 90.455 60.044 27.752 7.076 2.589 - 10.45 51.08 1963 2.280 4.534 15.602 43.121 89.144 102.184 116.133 88.894 58.095 25.218 10.474 2.515 - 10.45 51.08 1964 3.232 7.034 12.089 45.554 101.534 133.452 122.288 89.660 61.782 23.724 5.147 2.850 - 10.45 51.08 1965 3.703 5.277 14.822 41.595 80.239 102.990 94.190 92.292 54.706 28.107 5.950 2.922 - 10.45 51.08 1966 3.528 9.702 21.285 48.523 103.408 117.559 92.377 89.237 53.542 30.762 5.942 3.343 - 10.45 51.08 1967 4.344 9.314 26.203 43.775 99.842 98.359 129.948 87.614 51.932 31.929 8.403 3.139 - 10.45 51.08 1968 3.701 7.363 25.105 64.477 79.498 106.528 112.185 85.354 50.819 25.911 7.711 2.589 - 10.45 51.08 1969 4.122 6.420 11.893 40.416 89.706 107.622 121.703 93.677 59.490 28.383 10.439 2.241 - 10.45 51.08 1970 3.390 6.526 16.245 32.129 78.429 124.646 109.045 86.571 62.421 23.726 9.914 3.408 - 10.45 51.08 1971 4.298 7.285 15.504 50.021 90.578 87.695 133.627 108.325 59.996 33.319 8.588 3.606 - 10.45 51.08 1972 3.495 7.292 26.205 42.911 80.735 107.862 102.643 84.894 48.893 26.904 9.069 3.667 - 10.45 51.08 1973 3.955 7.761 20.412 33.559 89.408 105.451 107.664 104.857 61.205 27.066 8.549 3.266 - 10.45 51.08 1974 4.693 7.863 24.756 58.702 79.704 96.703 95.202 91.385 61.863 20.029 5.798 3.881 - 10.45 51.08 1975 5.345 8.288 19.321 45.114 87.384 93.174 116.639 114.182 61.170 23.611 7.484 3.237 - 10.45 51.08 1976 4.110 7.334 17.583 49.553 101.093 121.087 133.682 97.951 48.251 27.137 8.836 3.348 - 10.45 51.08 1977 4.354 8.951 25.144 44.088 93.029 85.157 103.221 75.216 51.588 28.880 9.866 3.536 - 10.45 51.08 1978 4.397 6.989 23.057 47.920 78.732 97.560 100.569 87.506 48.992 28.169 7.839 3.222 - 10.45 51.08 1979 3.512 6.451 18.216 38.364 92.450 109.510 90.147 87.445 60.486 29.464 8.632 4.004 - 10.45 51.08 1980 3.674 9.210 15.613 41.136 92.723 101.930 84.650 97.060 60.308 27.335 6.005 3.403 - 10.45 51.08 1981 4.591 7.368 29.022 56.555 91.976 99.215 93.363 88.201 59.058 27.493 7.375 3.034 - 10.45 51.08 1982 4.121 8.859 23.418 54.131 94.992 114.400 119.786 102.458 72.878 27.198 12.013 3.689 - 10.45 51.08 1983 5.762 7.838 22.730 53.917 80.199 112.232 136.065 101.120 63.200 29.973 9.178 3.595 - 10.45 51.08 1984 5.019 7.880 19.819 52.741 69.679 93.458 101.139 92.126 49.179 30.239 9.957 4.164 - 10.45 51.08 1985 3.911 8.025 17.756 53.781 94.758 93.636 123.877 94.672 61.279 30.387 7.543 4.555 - 10.45 51.08 1986 4.831 5.524 21.134 36.983 101.219 111.742 113.015 98.059 52.898 33.019 11.363 4.519 - 10.45 51.08 1987 3.421 7.664 17.761 59.268 79.851 88.110 114.062 84.621 60.848 29.833 8.946 3.889 - 10.45 51.08 1988 5.909 8.955 17.703 56.155 104.370 95.602 117.401 105.622 57.042 28.099 9.108 4.222 - 10.45 51.08 1989 6.470 10.075 32.631 46.571 120.148 114.422 114.136 101.991 60.620 32.457 10.281 4.459 - 10.45 51.08 1990 5.849 14.798 36.875 56.035 117.098 97.989 116.762 110.922 48.807 34.175 7.532 4.056 - 10.45 51.08 1991 5.271 9.241 29.325 57.361 73.060 100.434 135.206 100.341 71.923 33.396 8.347 3.859 - 10.45 51.08 1992 4.739 9.388 24.677 54.510 116.107 105.769 121.283 103.829 59.776 23.039 8.331 4.139 - 10.45 51.08 1993 5.611 7.869 27.638 68.848 110.515 106.783 108.129 97.444 50.549 26.656 5.901 4.209 - 10.45 51.08 1994 5.567 8.883 27.842 54.547 99.148 116.537 143.686 102.028 57.953 27.746 10.727 4.803 - 10.45 51.08 1995 5.349 11.151 24.777 52.389 94.095 92.599 137.285 115.517 50.839 32.969 8.334 3.228 - 10.45 51.08 1996 3.991 8.714 17.956 60.966 73.494 116.284 102.745 92.709 41.952 27.422 9.907 3.548 - 10.45 51.08 1997 4.436 11.343 29.378 54.579 96.284 113.347 104.603 109.297 69.423 28.187 8.152 3.959 - 10.45 51.08 1998 6.016 12.639 28.618 58.715 106.111 111.313 99.041 99.491 51.275 24.152 6.526 4.368 - 10.45 51.08 1999 6.540 10.065 26.691 57.602 107.057 108.423 119.614 97.848 76.833 26.500 8.754 4.600 - 10.45 51.08 2000 5.774 12.072 26.433 66.724 113.470 121.725 82.466 106.695 57.151 30.842 10.149 5.250 - 10.45 51.08 2001 5.935 10.887 20.853 49.052 113.895 96.798 128.805 102.689 46.314 35.532 10.060 3.948 - 10.45 51.08 2002 6.360 13.660 31.242 56.409 91.282 113.192 100.816 95.716 59.911 26.155 8.028 3.955 - 10.45 51.08 2003 5.662 9.309 31.447 67.936 99.873 142.421 119.373 129.653 65.819 25.064 9.811 4.981 - 10.45 51.08 2004 5.544 10.281 31.025 68.414 88.669 106.063 110.053 110.562 70.156 34.180 7.718 4.492 - 10.45 51.08 2005 6.315 8.884 29.130 66.954 103.193 123.279 120.821 87.675 75.544 36.677 11.831 4.461 - 10.45 51.08 2006 5.203 8.891 21.815 57.482 105.897 128.204 159.951 81.340 79.596 34.899 12.302 5.645 - 10.45 51.08 2007 6.764 11.881 31.339 85.719 112.569 122.427 117.559 101.008 56.814 27.723 9.310 4.450 - 10.45 51.08 2008 7.094 13.734 29.546 52.212 108.541 124.550 121.024 96.651 54.535 30.897 8.063 4.133 - 10.45 51.08 2009 5.290 9.190 21.677 80.113 99.920 92.422 116.381 109.860 63.820 25.311 10.525 4.285 - 10.45 51.08 2010 4.085 8.955 29.561 68.298 73.111 124.095 141.692 86.039 53.991 29.790 9.325 3.198 - 10.45 51.08 2011 5.918 10.641 36.918 79.787 114.576 116.547 102.982 92.626 69.789 36.136 10.188 4.959 - 10.45 51.08 2012 6.039 8.940 39.416 53.218 110.456 98.419 113.387 110.217 64.693 31.870 9.214 4.548 diff --git a/rLPJGUESS/inst/extdata/outputsForTests/run_iffire/outDirectory/mra.out b/rLPJGUESS/inst/extdata/outputsForTests/run_iffire/outDirectory/mra.out deleted file mode 100644 index 4dfa3f1..0000000 --- a/rLPJGUESS/inst/extdata/outputsForTests/run_iffire/outDirectory/mra.out +++ /dev/null @@ -1,63 +0,0 @@ - Lon Lat Year Jan Feb Mar Apr May Jun Jul Aug Sep Oct Nov Dec - 10.45 51.08 1951 0.009 0.008 0.010 0.028 0.066 0.085 0.090 0.082 0.064 0.036 0.020 0.010 - 10.45 51.08 1952 0.007 0.006 0.010 0.041 0.073 0.082 0.089 0.077 0.046 0.030 0.011 0.006 - 10.45 51.08 1953 0.006 0.007 0.016 0.052 0.078 0.077 0.088 0.082 0.061 0.040 0.014 0.011 - 10.45 51.08 1954 0.005 0.004 0.013 0.022 0.073 0.087 0.074 0.078 0.060 0.041 0.019 0.012 - 10.45 51.08 1955 0.005 0.005 0.008 0.022 0.067 0.077 0.076 0.070 0.057 0.034 0.014 0.009 - 10.45 51.08 1956 0.008 0.001 0.010 0.018 0.070 0.069 0.081 0.072 0.057 0.036 0.012 0.010 - 10.45 51.08 1957 0.007 0.011 0.021 0.040 0.065 0.090 0.084 0.074 0.051 0.035 0.013 0.007 - 10.45 51.08 1958 0.007 0.011 0.007 0.019 0.071 0.077 0.090 0.086 0.065 0.040 0.015 0.011 - 10.45 51.08 1959 0.006 0.005 0.015 0.040 0.068 0.077 0.081 0.070 0.061 0.035 0.009 0.007 - 10.45 51.08 1960 0.007 0.005 0.011 0.022 0.062 0.084 0.079 0.071 0.051 0.032 0.017 0.007 - 10.45 51.08 1961 0.006 0.011 0.016 0.041 0.059 0.081 0.076 0.073 0.066 0.041 0.010 0.008 - 10.45 51.08 1962 0.009 0.006 0.006 0.024 0.055 0.082 0.077 0.079 0.058 0.036 0.011 0.005 - 10.45 51.08 1963 0.002 0.002 0.010 0.026 0.070 0.083 0.094 0.078 0.060 0.033 0.021 0.004 - 10.45 51.08 1964 0.004 0.006 0.007 0.028 0.080 0.101 0.098 0.082 0.065 0.031 0.014 0.008 - 10.45 51.08 1965 0.009 0.005 0.010 0.022 0.062 0.086 0.084 0.084 0.060 0.037 0.011 0.011 - 10.45 51.08 1966 0.004 0.010 0.010 0.029 0.073 0.081 0.072 0.071 0.051 0.037 0.008 0.008 - 10.45 51.08 1967 0.008 0.009 0.014 0.020 0.068 0.074 0.094 0.076 0.054 0.043 0.013 0.007 - 10.45 51.08 1968 0.006 0.007 0.013 0.034 0.063 0.083 0.087 0.076 0.055 0.036 0.014 0.005 - 10.45 51.08 1969 0.007 0.004 0.006 0.019 0.068 0.082 0.095 0.079 0.060 0.039 0.020 0.003 - 10.45 51.08 1970 0.005 0.006 0.008 0.017 0.058 0.094 0.089 0.080 0.064 0.033 0.020 0.009 - 10.45 51.08 1971 0.007 0.008 0.009 0.026 0.070 0.077 0.103 0.091 0.061 0.040 0.016 0.012 - 10.45 51.08 1972 0.005 0.008 0.015 0.026 0.066 0.089 0.090 0.081 0.052 0.030 0.017 0.009 - 10.45 51.08 1973 0.007 0.008 0.013 0.015 0.068 0.090 0.094 0.095 0.067 0.033 0.015 0.008 - 10.45 51.08 1974 0.012 0.011 0.018 0.038 0.068 0.083 0.087 0.087 0.067 0.024 0.015 0.015 - 10.45 51.08 1975 0.014 0.008 0.013 0.023 0.071 0.082 0.101 0.102 0.071 0.033 0.014 0.009 - 10.45 51.08 1976 0.011 0.007 0.009 0.025 0.078 0.097 0.106 0.091 0.059 0.041 0.017 0.008 - 10.45 51.08 1977 0.009 0.011 0.021 0.026 0.077 0.080 0.093 0.078 0.058 0.043 0.021 0.010 - 10.45 51.08 1978 0.009 0.006 0.017 0.026 0.064 0.087 0.090 0.085 0.057 0.040 0.016 0.010 - 10.45 51.08 1979 0.004 0.005 0.013 0.021 0.063 0.096 0.086 0.086 0.066 0.039 0.014 0.015 - 10.45 51.08 1980 0.005 0.011 0.012 0.019 0.059 0.090 0.081 0.093 0.068 0.037 0.014 0.010 - 10.45 51.08 1981 0.006 0.006 0.021 0.036 0.072 0.083 0.082 0.080 0.063 0.034 0.015 0.005 - 10.45 51.08 1982 0.007 0.006 0.013 0.022 0.065 0.092 0.099 0.093 0.077 0.040 0.024 0.010 - 10.45 51.08 1983 0.013 0.005 0.015 0.034 0.067 0.090 0.108 0.092 0.067 0.040 0.016 0.009 - 10.45 51.08 1984 0.009 0.007 0.010 0.021 0.052 0.080 0.086 0.087 0.056 0.043 0.018 0.009 - 10.45 51.08 1985 0.004 0.005 0.011 0.029 0.075 0.079 0.101 0.088 0.066 0.040 0.010 0.015 - 10.45 51.08 1986 0.008 0.002 0.012 0.019 0.082 0.089 0.098 0.091 0.056 0.045 0.023 0.011 - 10.45 51.08 1987 0.004 0.006 0.008 0.032 0.063 0.078 0.099 0.083 0.069 0.039 0.018 0.011 - 10.45 51.08 1988 0.014 0.010 0.012 0.027 0.087 0.086 0.103 0.099 0.067 0.043 0.016 0.013 - 10.45 51.08 1989 0.012 0.011 0.021 0.033 0.096 0.096 0.102 0.097 0.071 0.048 0.017 0.014 - 10.45 51.08 1990 0.012 0.018 0.029 0.038 0.101 0.089 0.105 0.106 0.060 0.047 0.017 0.010 - 10.45 51.08 1991 0.012 0.006 0.023 0.039 0.061 0.091 0.118 0.102 0.082 0.045 0.016 0.010 - 10.45 51.08 1992 0.011 0.012 0.017 0.031 0.096 0.099 0.111 0.108 0.071 0.031 0.018 0.012 - 10.45 51.08 1993 0.015 0.006 0.017 0.052 0.099 0.098 0.100 0.097 0.062 0.038 0.010 0.014 - 10.45 51.08 1994 0.014 0.008 0.023 0.038 0.090 0.103 0.126 0.105 0.070 0.035 0.025 0.016 - 10.45 51.08 1995 0.010 0.015 0.015 0.034 0.081 0.086 0.119 0.111 0.063 0.054 0.016 0.007 - 10.45 51.08 1996 0.005 0.006 0.010 0.035 0.065 0.100 0.096 0.096 0.052 0.041 0.022 0.007 - 10.45 51.08 1997 0.006 0.015 0.021 0.029 0.083 0.099 0.100 0.110 0.079 0.039 0.017 0.012 - 10.45 51.08 1998 0.015 0.017 0.021 0.048 0.095 0.102 0.097 0.100 0.065 0.036 0.012 0.012 - 10.45 51.08 1999 0.014 0.008 0.018 0.038 0.090 0.095 0.106 0.095 0.085 0.038 0.017 0.013 - 10.45 51.08 2000 0.010 0.013 0.019 0.045 0.099 0.101 0.083 0.104 0.068 0.047 0.022 0.015 - 10.45 51.08 2001 0.011 0.012 0.015 0.029 0.095 0.086 0.112 0.105 0.058 0.055 0.018 0.010 - 10.45 51.08 2002 0.012 0.018 0.022 0.038 0.085 0.102 0.098 0.101 0.069 0.035 0.018 0.010 - 10.45 51.08 2003 0.010 0.005 0.020 0.037 0.091 0.119 0.111 0.121 0.074 0.030 0.021 0.012 - 10.45 51.08 2004 0.009 0.014 0.020 0.050 0.077 0.096 0.103 0.109 0.078 0.048 0.017 0.010 - 10.45 51.08 2005 0.014 0.007 0.018 0.045 0.086 0.105 0.113 0.093 0.085 0.054 0.023 0.011 - 10.45 51.08 2006 0.006 0.008 0.013 0.036 0.094 0.108 0.137 0.090 0.094 0.058 0.030 0.018 - 10.45 51.08 2007 0.020 0.015 0.022 0.055 0.101 0.113 0.112 0.104 0.069 0.042 0.018 0.013 - 10.45 51.08 2008 0.018 0.015 0.019 0.036 0.100 0.114 0.116 0.107 0.067 0.045 0.021 0.012 - 10.45 51.08 2009 0.007 0.009 0.018 0.061 0.095 0.092 0.115 0.116 0.080 0.039 0.028 0.012 - 10.45 51.08 2010 0.005 0.008 0.022 0.047 0.069 0.112 0.130 0.096 0.069 0.042 0.023 0.005 - 10.45 51.08 2011 0.013 0.011 0.021 0.070 0.103 0.110 0.105 0.104 0.087 0.050 0.018 0.017 - 10.45 51.08 2012 0.014 0.008 0.029 0.041 0.103 0.098 0.113 0.118 0.081 0.047 0.021 0.014 diff --git a/rLPJGUESS/inst/extdata/outputsForTests/run_iffire/outDirectory/mrh.out b/rLPJGUESS/inst/extdata/outputsForTests/run_iffire/outDirectory/mrh.out deleted file mode 100644 index 2c8cead..0000000 --- a/rLPJGUESS/inst/extdata/outputsForTests/run_iffire/outDirectory/mrh.out +++ /dev/null @@ -1,63 +0,0 @@ - Lon Lat Year Jan Feb Mar Apr May Jun Jul Aug Sep Oct Nov Dec - 10.45 51.08 1951 0.011 0.007 0.008 0.025 0.051 0.047 0.067 0.056 0.054 0.025 0.013 0.008 - 10.45 51.08 1952 0.008 0.001 0.010 0.035 0.046 0.064 0.103 0.090 0.032 0.016 0.009 0.002 - 10.45 51.08 1953 0.002 0.003 0.017 0.045 0.067 0.066 0.068 0.072 0.062 0.041 0.016 0.011 - 10.45 51.08 1954 0.002 0.000 0.012 0.020 0.053 0.082 0.053 0.052 0.048 0.025 0.014 0.008 - 10.45 51.08 1955 0.002 0.004 0.003 0.020 0.053 0.062 0.068 0.052 0.051 0.030 0.010 0.006 - 10.45 51.08 1956 0.009 0.000 0.005 0.019 0.051 0.053 0.055 0.054 0.049 0.033 0.009 0.009 - 10.45 51.08 1957 0.003 0.013 0.022 0.030 0.045 0.076 0.082 0.055 0.040 0.022 0.013 0.005 - 10.45 51.08 1958 0.007 0.010 0.003 0.014 0.050 0.055 0.068 0.071 0.062 0.031 0.011 0.007 - 10.45 51.08 1959 0.008 0.002 0.023 0.040 0.061 0.071 0.115 0.084 0.068 0.039 0.011 0.005 - 10.45 51.08 1960 0.007 0.003 0.013 0.030 0.045 0.080 0.084 0.070 0.048 0.024 0.015 0.007 - 10.45 51.08 1961 0.003 0.009 0.026 0.032 0.035 0.055 0.093 0.070 0.083 0.060 0.017 0.006 - 10.45 51.08 1962 0.007 0.006 0.001 0.025 0.043 0.074 0.067 0.087 0.054 0.041 0.012 0.002 - 10.45 51.08 1963 0.000 0.000 0.006 0.025 0.053 0.073 0.082 0.062 0.052 0.025 0.016 0.003 - 10.45 51.08 1964 0.000 0.003 0.003 0.025 0.052 0.094 0.095 0.079 0.066 0.028 0.012 0.007 - 10.45 51.08 1965 0.006 0.001 0.004 0.026 0.042 0.055 0.069 0.063 0.045 0.033 0.009 0.006 - 10.45 51.08 1966 0.003 0.008 0.016 0.028 0.070 0.084 0.056 0.068 0.052 0.050 0.008 0.007 - 10.45 51.08 1967 0.006 0.012 0.021 0.024 0.065 0.056 0.102 0.092 0.049 0.047 0.017 0.004 - 10.45 51.08 1968 0.002 0.008 0.008 0.038 0.049 0.074 0.103 0.084 0.055 0.031 0.014 0.002 - 10.45 51.08 1969 0.003 0.004 0.001 0.018 0.051 0.057 0.100 0.108 0.045 0.037 0.021 0.001 - 10.45 51.08 1970 0.000 0.000 0.003 0.017 0.045 0.087 0.094 0.063 0.058 0.030 0.015 0.008 - 10.45 51.08 1971 0.002 0.011 0.006 0.031 0.065 0.063 0.094 0.113 0.062 0.039 0.013 0.008 - 10.45 51.08 1972 0.003 0.005 0.016 0.029 0.041 0.056 0.077 0.055 0.041 0.023 0.015 0.006 - 10.45 51.08 1973 0.003 0.008 0.011 0.019 0.053 0.083 0.106 0.091 0.066 0.023 0.010 0.002 - 10.45 51.08 1974 0.012 0.012 0.014 0.037 0.041 0.052 0.057 0.077 0.062 0.020 0.011 0.010 - 10.45 51.08 1975 0.017 0.009 0.014 0.017 0.050 0.058 0.088 0.105 0.066 0.035 0.011 0.006 - 10.45 51.08 1976 0.010 0.001 0.006 0.029 0.060 0.067 0.122 0.078 0.059 0.039 0.012 0.006 - 10.45 51.08 1977 0.002 0.010 0.021 0.016 0.049 0.059 0.062 0.048 0.041 0.028 0.016 0.004 - 10.45 51.08 1978 0.008 0.002 0.016 0.025 0.042 0.082 0.061 0.070 0.040 0.025 0.012 0.004 - 10.45 51.08 1979 0.000 0.000 0.008 0.019 0.044 0.091 0.059 0.071 0.055 0.033 0.008 0.009 - 10.45 51.08 1980 0.002 0.008 0.011 0.020 0.039 0.071 0.055 0.091 0.060 0.027 0.009 0.004 - 10.45 51.08 1981 0.004 0.003 0.015 0.035 0.044 0.068 0.086 0.065 0.054 0.026 0.012 0.003 - 10.45 51.08 1982 0.001 0.004 0.012 0.028 0.054 0.104 0.105 0.104 0.083 0.043 0.022 0.009 - 10.45 51.08 1983 0.015 0.005 0.015 0.022 0.044 0.068 0.112 0.086 0.062 0.040 0.014 0.004 - 10.45 51.08 1984 0.013 0.004 0.006 0.019 0.035 0.050 0.063 0.066 0.044 0.029 0.013 0.006 - 10.45 51.08 1985 0.000 0.002 0.008 0.032 0.060 0.065 0.080 0.075 0.055 0.050 0.009 0.009 - 10.45 51.08 1986 0.004 0.001 0.006 0.015 0.060 0.059 0.094 0.084 0.033 0.031 0.014 0.008 - 10.45 51.08 1987 0.002 0.001 0.001 0.028 0.040 0.039 0.077 0.052 0.054 0.027 0.013 0.004 - 10.45 51.08 1988 0.014 0.010 0.008 0.025 0.067 0.075 0.069 0.088 0.060 0.043 0.013 0.006 - 10.45 51.08 1989 0.012 0.009 0.020 0.029 0.055 0.065 0.087 0.085 0.060 0.033 0.014 0.005 - 10.45 51.08 1990 0.008 0.017 0.024 0.024 0.064 0.049 0.070 0.092 0.044 0.035 0.014 0.004 - 10.45 51.08 1991 0.011 0.001 0.024 0.028 0.033 0.058 0.100 0.068 0.067 0.040 0.012 0.004 - 10.45 51.08 1992 0.009 0.007 0.016 0.022 0.062 0.075 0.069 0.088 0.042 0.023 0.010 0.006 - 10.45 51.08 1993 0.008 0.001 0.011 0.032 0.078 0.056 0.053 0.064 0.036 0.025 0.005 0.004 - 10.45 51.08 1994 0.010 0.005 0.015 0.022 0.055 0.057 0.088 0.083 0.036 0.020 0.015 0.008 - 10.45 51.08 1995 0.004 0.013 0.013 0.023 0.044 0.043 0.077 0.083 0.035 0.029 0.011 0.001 - 10.45 51.08 1996 0.000 0.000 0.004 0.024 0.038 0.066 0.050 0.059 0.030 0.023 0.012 0.003 - 10.45 51.08 1997 0.000 0.009 0.019 0.019 0.053 0.074 0.063 0.076 0.054 0.028 0.008 0.004 - 10.45 51.08 1998 0.013 0.008 0.017 0.029 0.055 0.064 0.059 0.078 0.031 0.017 0.007 0.002 - 10.45 51.08 1999 0.012 0.004 0.014 0.030 0.056 0.059 0.069 0.075 0.073 0.036 0.012 0.007 - 10.45 51.08 2000 0.006 0.010 0.015 0.031 0.083 0.082 0.059 0.076 0.044 0.030 0.018 0.012 - 10.45 51.08 2001 0.006 0.011 0.011 0.019 0.055 0.056 0.068 0.100 0.047 0.038 0.013 0.004 - 10.45 51.08 2002 0.002 0.019 0.014 0.021 0.048 0.064 0.066 0.067 0.052 0.019 0.011 0.004 - 10.45 51.08 2003 0.004 0.002 0.013 0.028 0.066 0.078 0.091 0.111 0.050 0.021 0.011 0.006 - 10.45 51.08 2004 0.007 0.010 0.011 0.028 0.036 0.061 0.060 0.094 0.059 0.032 0.015 0.004 - 10.45 51.08 2005 0.011 0.001 0.007 0.032 0.047 0.075 0.080 0.051 0.051 0.028 0.018 0.005 - 10.45 51.08 2006 0.002 0.002 0.002 0.026 0.058 0.057 0.096 0.060 0.053 0.035 0.018 0.013 - 10.45 51.08 2007 0.017 0.010 0.020 0.038 0.060 0.062 0.058 0.050 0.037 0.021 0.009 0.005 - 10.45 51.08 2008 0.011 0.012 0.016 0.018 0.058 0.076 0.071 0.087 0.047 0.023 0.010 0.004 - 10.45 51.08 2009 0.001 0.004 0.013 0.040 0.047 0.051 0.070 0.082 0.052 0.022 0.012 0.006 - 10.45 51.08 2010 0.000 0.001 0.012 0.032 0.035 0.068 0.088 0.046 0.035 0.018 0.012 0.000 - 10.45 51.08 2011 0.006 0.005 0.012 0.045 0.067 0.077 0.055 0.059 0.046 0.030 0.011 0.008 - 10.45 51.08 2012 0.011 0.001 0.023 0.029 0.062 0.049 0.057 0.070 0.052 0.027 0.010 0.004 diff --git a/rLPJGUESS/inst/extdata/outputsForTests/run_iffire/outDirectory/mrunoff.out b/rLPJGUESS/inst/extdata/outputsForTests/run_iffire/outDirectory/mrunoff.out deleted file mode 100644 index 14506fe..0000000 --- a/rLPJGUESS/inst/extdata/outputsForTests/run_iffire/outDirectory/mrunoff.out +++ /dev/null @@ -1,63 +0,0 @@ - Lon Lat Year Jan Feb Mar Apr May Jun Jul Aug Sep Oct Nov Dec - 10.45 51.08 1951 0.000 3.204 5.317 2.672 0.000 63.166 0.000 0.000 0.000 0.000 28.712 9.526 - 10.45 51.08 1952 19.580 31.098 53.129 24.635 4.011 0.000 0.000 0.000 69.004 16.518 66.366 28.722 - 10.45 51.08 1953 30.992 49.532 0.524 0.000 0.000 6.050 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1954 11.170 0.000 0.059 21.508 0.000 0.000 0.000 0.000 0.000 10.060 10.295 34.926 - 10.45 51.08 1955 30.644 29.144 38.414 15.611 0.000 0.000 5.275 12.029 0.000 2.896 10.599 37.261 - 10.45 51.08 1956 19.754 0.000 50.994 31.616 0.000 23.497 95.955 10.325 1.137 11.221 20.240 12.134 - 10.45 51.08 1957 24.246 28.232 15.598 3.329 0.000 0.000 0.000 0.000 0.000 1.147 17.845 21.564 - 10.45 51.08 1958 37.418 20.635 74.248 17.187 6.774 27.749 22.242 0.000 0.000 2.617 20.878 29.912 - 10.45 51.08 1959 18.729 4.514 4.727 1.219 0.333 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1960 4.024 2.237 16.558 6.005 17.366 0.000 0.000 0.000 0.000 53.073 24.460 33.003 - 10.45 51.08 1961 45.869 33.988 11.294 44.629 44.358 45.402 0.000 0.000 0.000 0.000 0.000 9.572 - 10.45 51.08 1962 8.255 21.319 22.007 12.848 6.179 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1963 0.000 0.000 13.018 7.867 1.796 0.000 1.543 0.148 0.000 0.734 25.592 3.248 - 10.45 51.08 1964 6.788 22.801 10.911 20.927 35.233 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1965 0.000 0.000 17.232 14.854 5.569 9.665 0.000 0.000 0.000 0.000 0.000 59.380 - 10.45 51.08 1966 16.858 33.264 15.052 23.675 0.000 0.000 23.502 21.969 2.494 40.311 31.047 43.779 - 10.45 51.08 1967 19.123 15.680 25.527 9.126 0.544 6.141 0.000 0.000 0.000 5.502 11.688 19.919 - 10.45 51.08 1968 28.787 22.211 23.838 3.683 6.889 0.000 0.000 0.000 0.000 13.428 14.674 6.026 - 10.45 51.08 1969 19.989 10.987 17.937 66.272 37.269 19.166 0.000 0.000 2.780 0.000 0.000 0.000 - 10.45 51.08 1970 0.000 60.078 26.262 30.892 19.644 1.377 0.000 11.789 0.000 6.839 21.769 14.522 - 10.45 51.08 1971 17.901 16.665 8.657 5.853 0.000 0.182 0.000 0.000 0.000 0.000 12.981 0.000 - 10.45 51.08 1972 0.000 0.000 3.152 5.080 5.198 7.611 23.586 42.256 0.000 1.015 16.663 1.900 - 10.45 51.08 1973 11.680 15.130 18.049 13.478 6.006 0.000 0.000 0.000 0.000 9.271 0.171 12.312 - 10.45 51.08 1974 13.842 17.514 13.692 0.000 0.000 2.974 11.850 0.000 0.000 38.596 14.218 51.940 - 10.45 51.08 1975 7.881 12.095 15.637 20.983 0.924 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1976 33.121 10.507 8.197 1.410 0.000 4.241 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1977 0.000 0.000 22.504 11.923 0.000 6.707 0.000 52.761 5.193 5.845 59.899 30.631 - 10.45 51.08 1978 11.715 8.183 18.476 4.314 6.361 0.000 0.000 0.000 0.000 2.780 0.000 20.310 - 10.45 51.08 1979 2.078 3.477 109.641 19.564 3.468 0.000 0.000 0.000 0.000 0.000 0.000 32.100 - 10.45 51.08 1980 16.717 19.563 13.293 19.695 1.068 0.000 0.000 0.000 0.000 0.000 0.000 19.566 - 10.45 51.08 1981 14.954 19.658 30.740 3.562 12.626 1.194 0.145 33.704 3.060 24.515 34.657 33.220 - 10.45 51.08 1982 39.763 1.544 13.200 5.101 2.622 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1983 0.000 0.000 5.013 76.620 24.046 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1984 0.000 20.469 9.124 28.560 49.264 10.042 0.000 3.533 11.380 22.857 27.231 7.016 - 10.45 51.08 1985 17.265 7.996 13.110 5.648 2.568 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1986 24.212 1.800 38.478 39.602 6.825 12.994 0.000 0.000 0.000 15.292 0.000 21.924 - 10.45 51.08 1987 32.990 26.026 69.799 7.449 2.604 49.775 0.524 15.300 30.406 7.163 28.888 20.006 - 10.45 51.08 1988 17.916 21.202 55.658 16.539 0.000 0.000 0.000 0.000 0.000 0.000 0.000 28.676 - 10.45 51.08 1989 13.831 11.477 21.719 10.626 0.000 0.000 0.000 0.000 0.000 0.000 7.456 20.987 - 10.45 51.08 1990 9.403 15.765 15.664 13.968 0.000 5.218 0.000 0.000 0.000 0.000 0.000 19.040 - 10.45 51.08 1991 16.310 7.385 8.550 1.467 1.751 0.000 0.000 15.270 0.000 0.000 0.000 0.000 - 10.45 51.08 1992 0.000 7.715 52.156 8.951 2.638 0.000 30.966 0.000 0.000 0.000 30.274 34.487 - 10.45 51.08 1993 19.174 16.766 11.830 3.659 0.000 2.476 25.444 2.246 4.581 12.886 13.413 65.504 - 10.45 51.08 1994 27.535 15.902 28.967 70.017 4.922 2.580 0.000 0.000 2.773 4.224 21.871 20.037 - 10.45 51.08 1995 32.986 31.451 11.681 13.934 2.651 35.683 11.586 0.000 18.321 3.476 13.339 9.909 - 10.45 51.08 1996 1.700 16.044 12.607 4.724 19.951 0.308 12.830 14.951 12.347 17.102 29.870 38.025 - 10.45 51.08 1997 8.941 32.348 29.206 12.221 1.518 0.000 35.587 0.000 0.000 0.000 8.525 26.483 - 10.45 51.08 1998 13.096 8.024 21.550 11.523 1.226 0.000 0.000 0.000 8.025 70.843 48.809 6.299 - 10.45 51.08 1999 16.744 16.200 18.824 11.274 0.000 5.328 17.593 0.000 0.000 0.000 15.407 30.854 - 10.45 51.08 2000 23.867 39.876 42.783 5.823 0.000 0.000 0.000 0.000 0.000 9.827 11.877 8.015 - 10.45 51.08 2001 11.494 9.896 61.621 19.096 3.127 0.867 12.734 0.000 0.972 9.809 40.951 21.243 - 10.45 51.08 2002 10.135 28.936 29.370 11.087 14.469 29.710 18.049 9.013 3.368 30.412 76.981 86.181 - 10.45 51.08 2003 25.540 9.089 11.419 2.537 2.963 4.110 0.000 0.000 0.000 0.000 0.000 6.470 - 10.45 51.08 2004 18.740 13.136 10.329 6.855 77.511 0.000 5.775 0.000 0.000 0.000 7.049 9.819 - 10.45 51.08 2005 8.200 26.351 24.585 8.530 4.424 0.000 0.000 0.000 2.366 4.697 10.910 15.176 - 10.45 51.08 2006 10.637 10.269 25.031 19.722 0.811 8.280 16.082 0.192 0.000 1.497 15.622 9.793 - 10.45 51.08 2007 24.704 18.467 25.776 1.601 1.981 6.380 30.212 75.423 65.005 2.711 33.591 23.146 - 10.45 51.08 2008 16.706 9.420 28.263 30.533 1.832 0.000 0.000 0.000 0.000 0.478 11.519 27.110 - 10.45 51.08 2009 5.190 20.147 27.300 3.798 14.962 5.263 3.931 0.000 0.000 12.691 42.970 68.500 - 10.45 51.08 2010 12.429 46.531 12.678 2.902 34.047 4.545 20.950 45.834 22.359 5.294 61.443 9.429 - 10.45 51.08 2011 97.666 7.956 4.293 1.362 0.000 0.000 0.000 0.000 0.000 2.635 0.000 19.953 - 10.45 51.08 2012 38.526 7.421 4.061 1.667 0.000 6.531 23.917 0.000 0.000 0.000 15.137 35.096 diff --git a/rLPJGUESS/inst/extdata/outputsForTests/run_iffire/outDirectory/mwcont_lower.out b/rLPJGUESS/inst/extdata/outputsForTests/run_iffire/outDirectory/mwcont_lower.out deleted file mode 100644 index 76ace7e..0000000 --- a/rLPJGUESS/inst/extdata/outputsForTests/run_iffire/outDirectory/mwcont_lower.out +++ /dev/null @@ -1,63 +0,0 @@ - Lon Lat Year Jan Feb Mar Apr May Jun Jul Aug Sep Oct Nov Dec - 10.45 51.08 1951 0.692 0.820 0.933 0.992 0.948 0.933 0.918 0.912 0.901 0.879 0.964 1.000 - 10.45 51.08 1952 1.000 1.000 0.997 0.972 0.974 0.937 0.787 0.602 0.650 0.890 0.999 0.999 - 10.45 51.08 1953 1.000 0.999 0.996 0.962 0.853 0.763 0.750 0.705 0.613 0.572 0.599 0.631 - 10.45 51.08 1954 0.759 0.854 0.959 0.996 0.944 0.813 0.794 0.869 0.909 0.992 0.999 1.000 - 10.45 51.08 1955 1.000 0.997 0.997 0.995 0.963 0.901 0.878 0.948 0.966 0.980 0.999 1.000 - 10.45 51.08 1956 1.000 1.000 0.999 0.996 0.967 0.957 0.987 0.988 0.988 0.994 1.000 1.000 - 10.45 51.08 1957 1.000 1.000 0.998 0.987 0.942 0.847 0.761 0.772 0.819 0.929 0.989 1.000 - 10.45 51.08 1958 1.000 1.000 0.996 0.996 0.989 0.950 0.939 0.875 0.856 0.926 0.999 1.000 - 10.45 51.08 1959 1.000 1.000 0.999 0.991 0.960 0.902 0.773 0.648 0.555 0.480 0.568 0.650 - 10.45 51.08 1960 0.804 0.964 1.000 0.996 0.982 0.925 0.811 0.760 0.786 0.893 0.999 1.000 - 10.45 51.08 1961 1.000 1.000 0.998 0.996 0.991 0.974 0.851 0.799 0.744 0.692 0.710 0.832 - 10.45 51.08 1962 0.964 1.000 0.997 0.996 0.994 0.921 0.815 0.715 0.649 0.619 0.618 0.674 - 10.45 51.08 1963 0.715 0.723 0.867 0.996 0.973 0.906 0.891 0.857 0.886 0.979 0.999 1.000 - 10.45 51.08 1964 1.000 1.000 1.000 0.997 0.976 0.879 0.719 0.601 0.522 0.500 0.547 0.609 - 10.45 51.08 1965 0.711 0.809 0.906 0.998 0.985 0.962 0.925 0.896 0.867 0.862 0.891 0.999 - 10.45 51.08 1966 1.000 0.997 0.999 0.998 0.957 0.882 0.957 0.969 0.988 0.976 0.999 1.000 - 10.45 51.08 1967 1.000 1.000 0.999 0.997 0.965 0.971 0.932 0.852 0.913 0.986 0.999 1.000 - 10.45 51.08 1968 1.000 0.999 0.999 0.989 0.989 0.951 0.863 0.795 0.828 0.974 0.998 1.000 - 10.45 51.08 1969 1.000 1.000 1.000 0.998 0.984 0.963 0.886 0.753 0.768 0.769 0.824 0.869 - 10.45 51.08 1970 0.888 0.992 1.000 0.999 0.996 0.944 0.855 0.871 0.913 0.955 0.999 1.000 - 10.45 51.08 1971 1.000 1.000 1.000 0.994 0.960 0.960 0.911 0.738 0.639 0.611 0.649 0.759 - 10.45 51.08 1972 0.798 0.836 0.885 0.984 0.986 0.982 0.973 0.986 0.973 0.976 0.999 1.000 - 10.45 51.08 1973 1.000 1.000 1.000 0.999 0.982 0.906 0.793 0.725 0.643 0.718 0.854 0.972 - 10.45 51.08 1974 1.000 1.000 0.998 0.967 0.973 0.984 0.993 0.938 0.923 0.955 1.000 1.000 - 10.45 51.08 1975 1.000 1.000 1.000 0.997 0.977 0.929 0.910 0.783 0.719 0.737 0.792 0.881 - 10.45 51.08 1976 0.980 1.000 1.000 0.995 0.960 0.919 0.748 0.629 0.540 0.535 0.587 0.676 - 10.45 51.08 1977 0.763 0.915 0.996 0.997 0.977 0.919 0.918 0.975 0.994 0.995 0.999 1.000 - 10.45 51.08 1978 1.000 1.000 1.000 0.993 0.986 0.915 0.867 0.828 0.853 0.959 0.984 1.000 - 10.45 51.08 1979 1.000 1.000 0.999 0.997 0.988 0.937 0.900 0.899 0.852 0.848 0.942 0.999 - 10.45 51.08 1980 1.000 1.000 1.000 0.999 0.972 0.913 0.960 0.899 0.838 0.844 0.918 0.991 - 10.45 51.08 1981 1.000 0.999 0.999 0.987 0.986 0.988 0.968 0.957 0.970 0.996 1.000 0.999 - 10.45 51.08 1982 1.000 0.999 1.000 0.995 0.981 0.884 0.803 0.712 0.626 0.611 0.646 0.715 - 10.45 51.08 1983 0.802 0.900 0.958 0.996 0.994 0.969 0.870 0.779 0.737 0.742 0.743 0.794 - 10.45 51.08 1984 0.897 0.999 1.000 0.994 0.994 0.982 0.970 0.981 0.984 0.998 0.996 1.000 - 10.45 51.08 1985 1.000 1.000 1.000 0.995 0.974 0.937 0.933 0.881 0.858 0.828 0.833 0.902 - 10.45 51.08 1986 0.998 1.000 1.000 0.996 0.990 0.984 0.895 0.831 0.869 0.901 0.970 0.997 - 10.45 51.08 1987 0.999 0.999 0.999 0.996 0.990 0.993 0.961 0.995 0.991 0.995 1.000 1.000 - 10.45 51.08 1988 1.000 1.000 0.999 0.995 0.956 0.876 0.883 0.853 0.791 0.776 0.798 0.956 - 10.45 51.08 1989 1.000 1.000 0.999 0.997 0.960 0.897 0.827 0.765 0.702 0.726 0.827 0.947 - 10.45 51.08 1990 1.000 1.000 0.996 0.997 0.944 0.891 0.895 0.782 0.770 0.795 0.882 0.998 - 10.45 51.08 1991 1.000 1.000 0.999 0.991 0.991 0.949 0.895 0.849 0.787 0.755 0.782 0.834 - 10.45 51.08 1992 0.950 0.994 0.999 0.997 0.971 0.892 0.880 0.817 0.820 0.859 0.977 1.000 - 10.45 51.08 1993 1.000 0.999 0.999 0.993 0.925 0.952 0.960 0.978 0.986 0.998 1.000 1.000 - 10.45 51.08 1994 1.000 1.000 0.999 0.994 0.972 0.980 0.931 0.876 0.969 0.992 0.999 1.000 - 10.45 51.08 1995 1.000 1.000 1.000 0.998 0.985 0.993 0.960 0.912 0.954 0.989 1.000 1.000 - 10.45 51.08 1996 1.000 1.000 1.000 0.997 0.996 0.968 0.975 0.976 0.997 0.999 0.999 1.000 - 10.45 51.08 1997 0.999 1.000 0.999 0.998 0.989 0.928 0.908 0.940 0.912 0.937 0.998 1.000 - 10.45 51.08 1998 1.000 1.000 0.999 0.996 0.961 0.934 0.948 0.925 0.960 0.999 1.000 1.000 - 10.45 51.08 1999 1.000 1.000 1.000 0.997 0.971 0.984 0.983 0.953 0.931 0.937 0.985 1.000 - 10.45 51.08 2000 1.000 1.000 0.999 0.994 0.954 0.892 0.881 0.873 0.925 0.993 1.000 1.000 - 10.45 51.08 2001 1.000 1.000 0.998 0.997 0.983 0.975 0.986 0.928 0.948 0.996 1.000 1.000 - 10.45 51.08 2002 1.000 1.000 0.998 0.992 0.995 0.985 0.971 0.989 0.983 0.999 1.000 1.000 - 10.45 51.08 2003 1.000 1.000 1.000 0.995 0.986 0.984 0.937 0.829 0.772 0.821 0.874 0.969 - 10.45 51.08 2004 1.000 1.000 0.999 0.994 0.990 0.968 0.985 0.937 0.900 0.904 0.950 1.000 - 10.45 51.08 2005 0.999 1.000 0.999 0.997 0.991 0.946 0.892 0.954 0.980 0.992 0.999 1.000 - 10.45 51.08 2006 1.000 1.000 1.000 0.998 0.974 0.972 0.887 0.875 0.963 0.980 1.000 1.000 - 10.45 51.08 2007 1.000 1.000 1.000 0.986 0.945 0.960 0.991 0.988 0.994 0.995 1.000 1.000 - 10.45 51.08 2008 1.000 1.000 1.000 0.997 0.969 0.910 0.901 0.861 0.834 0.902 1.000 1.000 - 10.45 51.08 2009 1.000 1.000 1.000 0.994 0.994 0.988 0.984 0.941 0.908 0.980 0.998 1.000 - 10.45 51.08 2010 1.000 1.000 0.998 0.992 0.991 0.965 0.882 0.968 0.996 0.994 0.998 1.000 - 10.45 51.08 2011 1.000 1.000 0.998 0.983 0.930 0.850 0.897 0.927 0.972 0.985 0.994 1.000 - 10.45 51.08 2012 1.000 1.000 0.998 0.995 0.977 0.974 0.994 0.964 0.947 0.957 0.998 0.999 diff --git a/rLPJGUESS/inst/extdata/outputsForTests/run_iffire/outDirectory/mwcont_upper.out b/rLPJGUESS/inst/extdata/outputsForTests/run_iffire/outDirectory/mwcont_upper.out deleted file mode 100644 index 33ff913..0000000 --- a/rLPJGUESS/inst/extdata/outputsForTests/run_iffire/outDirectory/mwcont_upper.out +++ /dev/null @@ -1,63 +0,0 @@ - Lon Lat Year Jan Feb Mar Apr May Jun Jul Aug Sep Oct Nov Dec - 10.45 51.08 1951 0.826 0.851 0.817 0.531 0.347 0.768 0.562 0.692 0.559 0.511 0.846 0.902 - 10.45 51.08 1952 0.909 0.926 0.909 0.741 0.715 0.484 0.180 0.144 0.769 0.928 0.922 0.938 - 10.45 51.08 1953 0.918 0.944 0.714 0.404 0.285 0.490 0.635 0.461 0.275 0.352 0.602 0.596 - 10.45 51.08 1954 0.796 0.873 0.740 0.661 0.408 0.305 0.640 0.704 0.621 0.767 0.760 0.825 - 10.45 51.08 1955 0.941 0.928 0.918 0.724 0.457 0.448 0.667 0.818 0.642 0.598 0.823 0.871 - 10.45 51.08 1956 0.907 0.863 0.826 0.720 0.562 0.750 0.826 0.677 0.548 0.621 0.803 0.809 - 10.45 51.08 1957 0.896 0.835 0.727 0.542 0.437 0.454 0.610 0.649 0.588 0.865 0.890 0.894 - 10.45 51.08 1958 0.924 0.838 0.905 0.745 0.631 0.700 0.650 0.559 0.491 0.746 0.924 0.894 - 10.45 51.08 1959 0.909 0.803 0.623 0.540 0.477 0.524 0.134 0.422 0.271 0.120 0.774 0.812 - 10.45 51.08 1960 0.879 0.886 0.763 0.529 0.632 0.475 0.294 0.516 0.713 0.896 0.885 0.903 - 10.45 51.08 1961 0.939 0.874 0.640 0.772 0.839 0.750 0.320 0.434 0.346 0.234 0.483 0.818 - 10.45 51.08 1962 0.895 0.894 0.910 0.686 0.557 0.304 0.396 0.323 0.408 0.315 0.323 0.577 - 10.45 51.08 1963 0.676 0.681 0.847 0.712 0.479 0.469 0.557 0.694 0.532 0.695 0.793 0.894 - 10.45 51.08 1964 0.878 0.866 0.744 0.694 0.681 0.423 0.314 0.409 0.348 0.463 0.621 0.705 - 10.45 51.08 1965 0.839 0.887 0.897 0.636 0.615 0.631 0.534 0.528 0.530 0.442 0.635 0.911 - 10.45 51.08 1966 0.902 0.930 0.747 0.689 0.490 0.514 0.831 0.651 0.657 0.565 0.914 0.916 - 10.45 51.08 1967 0.918 0.807 0.735 0.621 0.431 0.705 0.500 0.498 0.739 0.711 0.732 0.803 - 10.45 51.08 1968 0.921 0.881 0.837 0.554 0.623 0.469 0.352 0.418 0.626 0.835 0.827 0.786 - 10.45 51.08 1969 0.796 0.809 0.900 0.823 0.747 0.740 0.410 0.285 0.722 0.548 0.651 0.726 - 10.45 51.08 1970 0.756 0.938 0.897 0.813 0.680 0.414 0.391 0.752 0.572 0.687 0.903 0.881 - 10.45 51.08 1971 0.858 0.783 0.690 0.559 0.491 0.566 0.247 0.105 0.242 0.444 0.702 0.882 - 10.45 51.08 1972 0.814 0.808 0.778 0.624 0.631 0.677 0.607 0.842 0.600 0.490 0.732 0.853 - 10.45 51.08 1973 0.813 0.873 0.812 0.619 0.521 0.361 0.325 0.326 0.496 0.780 0.907 0.910 - 10.45 51.08 1974 0.876 0.828 0.802 0.481 0.539 0.590 0.699 0.510 0.469 0.672 0.882 0.919 - 10.45 51.08 1975 0.891 0.822 0.762 0.732 0.613 0.536 0.510 0.236 0.428 0.523 0.632 0.678 - 10.45 51.08 1976 0.893 0.855 0.676 0.518 0.378 0.568 0.141 0.202 0.161 0.485 0.611 0.723 - 10.45 51.08 1977 0.720 0.757 0.794 0.677 0.471 0.539 0.681 0.804 0.720 0.700 0.902 0.916 - 10.45 51.08 1978 0.865 0.810 0.725 0.542 0.568 0.343 0.467 0.523 0.601 0.803 0.697 0.770 - 10.45 51.08 1979 0.846 0.872 0.910 0.800 0.577 0.430 0.602 0.453 0.437 0.458 0.784 0.914 - 10.45 51.08 1980 0.875 0.820 0.662 0.638 0.519 0.437 0.537 0.280 0.363 0.610 0.744 0.883 - 10.45 51.08 1981 0.922 0.904 0.835 0.594 0.751 0.646 0.392 0.646 0.507 0.891 0.880 0.943 - 10.45 51.08 1982 0.919 0.866 0.668 0.485 0.490 0.283 0.319 0.311 0.105 0.433 0.521 0.577 - 10.45 51.08 1983 0.617 0.663 0.651 0.846 0.697 0.532 0.273 0.437 0.459 0.454 0.396 0.532 - 10.45 51.08 1984 0.650 0.850 0.746 0.787 0.742 0.701 0.566 0.642 0.732 0.810 0.814 0.910 - 10.45 51.08 1985 0.917 0.878 0.750 0.599 0.393 0.501 0.430 0.452 0.455 0.291 0.322 0.669 - 10.45 51.08 1986 0.901 0.863 0.844 0.869 0.652 0.649 0.339 0.446 0.651 0.697 0.837 0.762 - 10.45 51.08 1987 0.941 0.924 0.946 0.672 0.601 0.846 0.568 0.705 0.665 0.747 0.762 0.912 - 10.45 51.08 1988 0.892 0.856 0.884 0.709 0.383 0.347 0.611 0.361 0.318 0.327 0.446 0.857 - 10.45 51.08 1989 0.877 0.754 0.747 0.571 0.472 0.453 0.310 0.313 0.334 0.538 0.884 0.921 - 10.45 51.08 1990 0.885 0.797 0.770 0.595 0.381 0.581 0.473 0.192 0.514 0.481 0.626 0.828 - 10.45 51.08 1991 0.824 0.764 0.672 0.470 0.457 0.396 0.296 0.585 0.287 0.320 0.426 0.570 - 10.45 51.08 1992 0.815 0.773 0.765 0.684 0.420 0.436 0.614 0.382 0.577 0.549 0.773 0.931 - 10.45 51.08 1993 0.924 0.923 0.795 0.544 0.369 0.699 0.664 0.519 0.589 0.667 0.823 0.899 - 10.45 51.08 1994 0.917 0.870 0.843 0.747 0.610 0.575 0.576 0.519 0.703 0.657 0.755 0.915 - 10.45 51.08 1995 0.905 0.886 0.711 0.626 0.584 0.759 0.591 0.484 0.729 0.751 0.694 0.729 - 10.45 51.08 1996 0.811 0.817 0.720 0.581 0.717 0.548 0.654 0.666 0.707 0.701 0.879 0.912 - 10.45 51.08 1997 0.917 0.891 0.827 0.659 0.511 0.304 0.561 0.520 0.442 0.560 0.722 0.865 - 10.45 51.08 1998 0.877 0.769 0.736 0.569 0.538 0.491 0.526 0.362 0.731 0.890 0.930 0.883 - 10.45 51.08 1999 0.836 0.804 0.761 0.636 0.454 0.636 0.676 0.480 0.401 0.427 0.793 0.908 - 10.45 51.08 2000 0.900 0.906 0.866 0.660 0.437 0.356 0.483 0.485 0.693 0.729 0.681 0.677 - 10.45 51.08 2001 0.672 0.732 0.792 0.773 0.573 0.527 0.674 0.304 0.516 0.597 0.795 0.926 - 10.45 51.08 2002 0.891 0.837 0.856 0.663 0.700 0.659 0.629 0.668 0.584 0.787 0.918 0.923 - 10.45 51.08 2003 0.926 0.895 0.773 0.496 0.479 0.602 0.348 0.132 0.433 0.618 0.685 0.883 - 10.45 51.08 2004 0.888 0.874 0.700 0.561 0.770 0.457 0.574 0.330 0.349 0.447 0.663 0.897 - 10.45 51.08 2005 0.896 0.910 0.853 0.624 0.532 0.329 0.446 0.665 0.613 0.692 0.680 0.777 - 10.45 51.08 2006 0.773 0.723 0.793 0.688 0.539 0.607 0.520 0.623 0.597 0.638 0.711 0.698 - 10.45 51.08 2007 0.792 0.795 0.720 0.538 0.457 0.698 0.658 0.752 0.619 0.780 0.812 0.886 - 10.45 51.08 2008 0.841 0.749 0.741 0.774 0.486 0.414 0.491 0.292 0.418 0.654 0.862 0.913 - 10.45 51.08 2009 0.853 0.800 0.802 0.610 0.682 0.561 0.549 0.394 0.506 0.726 0.912 0.938 - 10.45 51.08 2010 0.949 0.949 0.802 0.548 0.704 0.459 0.499 0.810 0.663 0.840 0.903 0.941 - 10.45 51.08 2011 0.939 0.836 0.688 0.497 0.268 0.289 0.622 0.542 0.601 0.590 0.575 0.687 - 10.45 51.08 2012 0.890 0.853 0.644 0.460 0.445 0.638 0.659 0.488 0.434 0.517 0.630 0.926 diff --git a/rLPJGUESS/inst/extdata/outputsForTests/run_iffire/outDirectory/nflux.out b/rLPJGUESS/inst/extdata/outputsForTests/run_iffire/outDirectory/nflux.out deleted file mode 100644 index bce13ab..0000000 --- a/rLPJGUESS/inst/extdata/outputsForTests/run_iffire/outDirectory/nflux.out +++ /dev/null @@ -1,63 +0,0 @@ - Lon Lat Year dep fix fert flux leach NEE - 10.45 51.08 1951 -11.23 -2.39 -0.00 0.77 0.17 -12.68 - 10.45 51.08 1952 -11.23 -2.24 -0.00 0.88 0.81 -11.78 - 10.45 51.08 1953 -11.23 -2.36 -0.00 0.88 0.26 -12.45 - 10.45 51.08 1954 -11.23 -2.78 -0.00 0.78 0.35 -12.88 - 10.45 51.08 1955 -11.23 -2.65 -0.00 0.68 0.61 -12.58 - 10.45 51.08 1956 -11.23 -2.77 -0.00 0.65 0.65 -12.70 - 10.45 51.08 1957 -11.23 -2.80 -0.00 0.82 0.51 -12.70 - 10.45 51.08 1958 -11.23 -2.50 -0.00 0.82 0.74 -12.17 - 10.45 51.08 1959 -11.23 -2.36 -0.00 0.86 0.14 -12.60 - 10.45 51.08 1960 -14.10 -2.85 -0.00 0.68 0.39 -15.88 - 10.45 51.08 1961 -14.10 -2.84 -0.00 0.78 0.61 -15.55 - 10.45 51.08 1962 -14.10 -2.69 -0.00 0.76 0.33 -15.70 - 10.45 51.08 1963 -14.10 -2.60 -0.00 0.75 0.22 -15.73 - 10.45 51.08 1964 -14.10 -2.25 -0.00 0.93 0.34 -15.08 - 10.45 51.08 1965 -14.10 -2.71 -0.00 0.69 0.37 -15.76 - 10.45 51.08 1966 -14.10 -2.48 -0.00 0.69 0.76 -15.13 - 10.45 51.08 1967 -14.10 -2.56 -0.00 0.79 0.56 -15.31 - 10.45 51.08 1968 -14.10 -2.78 -0.00 0.78 0.44 -15.65 - 10.45 51.08 1969 -14.10 -2.49 -0.00 0.81 0.58 -15.20 - 10.45 51.08 1970 -16.97 -2.33 -0.00 0.77 0.72 -17.81 - 10.45 51.08 1971 -16.97 -2.41 -0.00 0.95 0.26 -18.18 - 10.45 51.08 1972 -16.97 -2.73 -0.00 0.66 0.20 -18.84 - 10.45 51.08 1973 -16.97 -2.00 -0.00 1.02 0.38 -17.57 - 10.45 51.08 1974 -16.97 -2.54 -0.00 0.77 0.65 -18.08 - 10.45 51.08 1975 -16.97 -2.03 -0.00 1.01 0.30 -17.70 - 10.45 51.08 1976 -16.97 -2.04 -0.00 1.04 0.25 -17.71 - 10.45 51.08 1977 -16.97 -2.66 -0.00 0.72 0.52 -18.40 - 10.45 51.08 1978 -16.97 -2.48 -0.00 0.85 0.34 -18.26 - 10.45 51.08 1979 -16.97 -2.16 -0.00 0.93 0.56 -17.63 - 10.45 51.08 1980 -17.99 -2.23 -0.00 0.92 0.45 -18.85 - 10.45 51.08 1981 -17.99 -2.06 -0.00 0.83 0.67 -18.55 - 10.45 51.08 1982 -17.99 -1.84 -0.00 1.16 0.24 -18.44 - 10.45 51.08 1983 -17.99 -1.66 -0.00 0.94 0.23 -18.48 - 10.45 51.08 1984 -17.99 -2.34 -0.00 0.68 0.63 -19.03 - 10.45 51.08 1985 -17.99 -2.08 -0.00 0.92 0.23 -18.93 - 10.45 51.08 1986 -17.99 -1.91 -0.00 0.92 0.55 -18.43 - 10.45 51.08 1987 -17.99 -2.19 -0.00 0.73 0.80 -18.66 - 10.45 51.08 1988 -17.99 -1.87 -0.00 1.06 0.56 -18.24 - 10.45 51.08 1989 -17.99 -2.06 -0.00 1.06 0.35 -18.65 - 10.45 51.08 1990 -19.66 -2.18 -0.00 1.00 0.35 -20.49 - 10.45 51.08 1991 -19.66 -2.25 -0.00 1.04 0.18 -20.68 - 10.45 51.08 1992 -19.66 -1.58 -0.00 1.03 0.45 -19.76 - 10.45 51.08 1993 -19.66 -1.79 -0.00 0.88 0.64 -19.92 - 10.45 51.08 1994 -19.66 -1.80 -0.00 1.04 0.70 -19.72 - 10.45 51.08 1995 -19.66 -1.92 -0.00 0.92 0.66 -20.00 - 10.45 51.08 1996 -19.66 -2.27 -0.00 0.78 0.63 -20.51 - 10.45 51.08 1997 -19.66 -2.13 -0.00 1.05 0.61 -20.12 - 10.45 51.08 1998 -19.66 -2.27 -0.00 1.00 0.75 -20.18 - 10.45 51.08 1999 -19.66 -2.09 -0.00 0.99 0.51 -20.24 - 10.45 51.08 2000 -21.34 -1.95 -0.00 1.03 0.67 -21.59 - 10.45 51.08 2001 -21.34 -2.03 -0.00 0.95 0.80 -21.62 - 10.45 51.08 2002 -21.34 -2.18 -0.00 0.85 0.98 -21.69 - 10.45 51.08 2003 -21.34 -1.64 -0.00 1.13 0.25 -21.60 - 10.45 51.08 2004 -21.34 -2.20 -0.00 0.95 0.37 -22.23 - 10.45 51.08 2005 -21.34 -2.09 -0.00 0.97 0.49 -21.97 - 10.45 51.08 2006 -21.34 -1.87 -0.00 1.01 0.47 -21.74 - 10.45 51.08 2007 -21.34 -1.85 -0.00 0.91 0.78 -21.50 - 10.45 51.08 2008 -21.34 -2.01 -0.00 1.11 0.56 -21.68 - 10.45 51.08 2009 -21.34 -1.89 -0.00 0.99 0.74 -21.50 - 10.45 51.08 2010 -20.03 -2.10 -0.00 0.91 0.66 -20.56 - 10.45 51.08 2011 -20.03 -2.01 -0.00 1.07 0.36 -20.61 - 10.45 51.08 2012 -20.03 -2.10 -0.00 1.02 0.45 -20.66 diff --git a/rLPJGUESS/inst/extdata/outputsForTests/run_iffire/outDirectory/ngases.out b/rLPJGUESS/inst/extdata/outputsForTests/run_iffire/outDirectory/ngases.out deleted file mode 100644 index 29584f1..0000000 --- a/rLPJGUESS/inst/extdata/outputsForTests/run_iffire/outDirectory/ngases.out +++ /dev/null @@ -1,63 +0,0 @@ - Lon Lat Year NH3 NO NO2 N2O N2 NSoil Total - 10.45 51.08 1951 0.000 0.000 0.000 0.000 0.000 0.771 0.771 - 10.45 51.08 1952 0.000 0.000 0.000 0.000 0.000 0.882 0.882 - 10.45 51.08 1953 0.000 0.000 0.000 0.000 0.000 0.885 0.885 - 10.45 51.08 1954 0.000 0.000 0.000 0.000 0.000 0.782 0.782 - 10.45 51.08 1955 0.000 0.000 0.000 0.000 0.000 0.680 0.680 - 10.45 51.08 1956 0.000 0.000 0.000 0.000 0.000 0.653 0.653 - 10.45 51.08 1957 0.000 0.000 0.000 0.000 0.000 0.821 0.821 - 10.45 51.08 1958 0.000 0.000 0.000 0.000 0.000 0.822 0.822 - 10.45 51.08 1959 0.000 0.000 0.000 0.000 0.000 0.861 0.861 - 10.45 51.08 1960 0.000 0.000 0.000 0.000 0.000 0.683 0.683 - 10.45 51.08 1961 0.000 0.000 0.000 0.000 0.000 0.784 0.784 - 10.45 51.08 1962 0.000 0.000 0.000 0.000 0.000 0.759 0.759 - 10.45 51.08 1963 0.000 0.000 0.000 0.000 0.000 0.749 0.749 - 10.45 51.08 1964 0.000 0.000 0.000 0.000 0.000 0.934 0.934 - 10.45 51.08 1965 0.000 0.000 0.000 0.000 0.000 0.693 0.693 - 10.45 51.08 1966 0.000 0.000 0.000 0.000 0.000 0.687 0.687 - 10.45 51.08 1967 0.000 0.000 0.000 0.000 0.000 0.790 0.790 - 10.45 51.08 1968 0.000 0.000 0.000 0.000 0.000 0.784 0.784 - 10.45 51.08 1969 0.000 0.000 0.000 0.000 0.000 0.812 0.812 - 10.45 51.08 1970 0.000 0.000 0.000 0.000 0.000 0.773 0.773 - 10.45 51.08 1971 0.000 0.000 0.000 0.000 0.000 0.946 0.946 - 10.45 51.08 1972 0.000 0.000 0.000 0.000 0.000 0.662 0.662 - 10.45 51.08 1973 0.000 0.000 0.000 0.000 0.000 1.016 1.016 - 10.45 51.08 1974 0.000 0.000 0.000 0.000 0.000 0.773 0.773 - 10.45 51.08 1975 0.000 0.000 0.000 0.000 0.000 1.007 1.007 - 10.45 51.08 1976 0.000 0.000 0.000 0.000 0.000 1.044 1.044 - 10.45 51.08 1977 0.000 0.000 0.000 0.000 0.000 0.717 0.717 - 10.45 51.08 1978 0.000 0.000 0.000 0.000 0.000 0.851 0.851 - 10.45 51.08 1979 0.000 0.000 0.000 0.000 0.000 0.931 0.931 - 10.45 51.08 1980 0.000 0.000 0.000 0.000 0.000 0.921 0.921 - 10.45 51.08 1981 0.000 0.000 0.000 0.000 0.000 0.827 0.827 - 10.45 51.08 1982 0.000 0.000 0.000 0.000 0.000 1.156 1.156 - 10.45 51.08 1983 0.000 0.000 0.000 0.000 0.000 0.943 0.943 - 10.45 51.08 1984 0.000 0.000 0.000 0.000 0.000 0.678 0.678 - 10.45 51.08 1985 0.000 0.000 0.000 0.000 0.000 0.919 0.919 - 10.45 51.08 1986 0.000 0.000 0.000 0.000 0.000 0.925 0.925 - 10.45 51.08 1987 0.000 0.000 0.000 0.000 0.000 0.725 0.725 - 10.45 51.08 1988 0.000 0.000 0.000 0.000 0.000 1.062 1.062 - 10.45 51.08 1989 0.000 0.000 0.000 0.000 0.000 1.057 1.057 - 10.45 51.08 1990 0.000 0.000 0.000 0.000 0.000 0.998 0.998 - 10.45 51.08 1991 0.000 0.000 0.000 0.000 0.000 1.042 1.042 - 10.45 51.08 1992 0.000 0.000 0.000 0.000 0.000 1.025 1.025 - 10.45 51.08 1993 0.000 0.000 0.000 0.000 0.000 0.878 0.878 - 10.45 51.08 1994 0.000 0.000 0.000 0.000 0.000 1.038 1.038 - 10.45 51.08 1995 0.000 0.000 0.000 0.000 0.000 0.918 0.918 - 10.45 51.08 1996 0.000 0.000 0.000 0.000 0.000 0.783 0.783 - 10.45 51.08 1997 0.000 0.000 0.000 0.000 0.000 1.053 1.053 - 10.45 51.08 1998 0.000 0.000 0.000 0.000 0.000 0.995 0.995 - 10.45 51.08 1999 0.000 0.000 0.000 0.000 0.000 0.989 0.989 - 10.45 51.08 2000 0.000 0.000 0.000 0.000 0.000 1.030 1.030 - 10.45 51.08 2001 0.000 0.000 0.000 0.000 0.000 0.948 0.948 - 10.45 51.08 2002 0.000 0.000 0.000 0.000 0.000 0.850 0.850 - 10.45 51.08 2003 0.000 0.000 0.000 0.000 0.000 1.128 1.128 - 10.45 51.08 2004 0.000 0.000 0.000 0.000 0.000 0.950 0.950 - 10.45 51.08 2005 0.000 0.000 0.000 0.000 0.000 0.972 0.972 - 10.45 51.08 2006 0.000 0.000 0.000 0.000 0.000 1.007 1.007 - 10.45 51.08 2007 0.000 0.000 0.000 0.000 0.000 0.909 0.909 - 10.45 51.08 2008 0.000 0.000 0.000 0.000 0.000 1.106 1.106 - 10.45 51.08 2009 0.000 0.000 0.000 0.000 0.000 0.989 0.989 - 10.45 51.08 2010 0.000 0.000 0.000 0.000 0.000 0.907 0.907 - 10.45 51.08 2011 0.000 0.000 0.000 0.000 0.000 1.070 1.070 - 10.45 51.08 2012 0.000 0.000 0.000 0.000 0.000 1.020 1.020 diff --git a/rLPJGUESS/inst/extdata/outputsForTests/run_iffire/outDirectory/nlitter.out b/rLPJGUESS/inst/extdata/outputsForTests/run_iffire/outDirectory/nlitter.out deleted file mode 100644 index 570099e..0000000 --- a/rLPJGUESS/inst/extdata/outputsForTests/run_iffire/outDirectory/nlitter.out +++ /dev/null @@ -1,63 +0,0 @@ - Lon Lat Year Abi_alb BES Bet_pen Bet_pub Car_bet Cor_ave Fag_syl Fra_exc Jun_oxy MRS Pic_abi Pic_sit Pin_syl Pin_hal Pop_tre Que_coc Que_ile Que_pub Que_rob Til_cor Ulm_gla C3_gr C4_gr Total - 10.45 51.08 1951 0.00 0.00 0.00 111.44 0.84 0.00 22.19 2.17 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.24 0.12 3.42 0.00 0.00 141.42 - 10.45 51.08 1952 0.00 0.00 0.00 35.86 0.86 0.00 23.08 2.23 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.28 0.12 3.51 0.00 0.00 66.95 - 10.45 51.08 1953 0.00 0.00 0.00 36.49 0.89 0.00 24.14 2.31 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.32 0.13 3.62 0.00 0.00 68.89 - 10.45 51.08 1954 0.00 0.00 0.00 112.81 0.95 0.00 25.48 2.44 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.39 0.14 3.83 0.00 0.00 147.04 - 10.45 51.08 1955 0.00 0.00 0.00 31.70 0.95 0.00 26.59 5.47 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.40 0.14 6.86 0.00 0.00 73.12 - 10.45 51.08 1956 0.00 0.00 0.00 31.64 0.97 0.00 27.43 5.20 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.43 0.14 6.62 0.00 0.00 73.44 - 10.45 51.08 1957 0.00 0.00 0.00 32.28 1.00 0.00 28.45 1.83 0.00 0.00 0.01 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.47 0.15 3.30 0.00 0.00 68.48 - 10.45 51.08 1958 0.00 0.00 0.00 196.20 1.02 0.00 29.75 1.87 0.00 0.00 0.01 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.49 0.15 3.36 0.00 0.00 233.85 - 10.45 51.08 1959 0.00 0.00 0.00 17.87 1.03 0.00 30.93 1.89 0.00 0.00 0.01 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.51 0.15 6.55 0.00 0.00 59.95 - 10.45 51.08 1960 0.00 0.00 0.00 22.62 1.12 0.00 32.99 2.05 0.00 0.00 0.01 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.64 1.23 3.28 0.00 0.00 64.93 - 10.45 51.08 1961 0.00 0.00 0.00 23.70 1.15 0.00 35.53 2.09 0.00 0.00 0.01 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.94 0.09 3.35 0.00 0.00 70.86 - 10.45 51.08 1962 0.00 0.00 0.00 22.88 3.68 0.00 37.03 2.16 0.00 0.00 0.01 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.17 0.09 3.45 0.00 0.00 70.46 - 10.45 51.08 1963 0.00 0.00 0.00 24.17 0.91 0.00 39.15 2.20 0.00 0.00 0.01 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.32 0.09 6.89 0.00 0.00 74.74 - 10.45 51.08 1964 0.00 0.00 0.00 24.91 0.92 0.00 40.84 2.23 0.00 0.00 0.01 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.34 0.10 3.11 0.00 0.00 73.46 - 10.45 51.08 1965 0.00 0.00 0.00 214.88 0.93 0.00 42.06 2.24 0.00 0.00 0.01 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.35 0.10 3.14 0.00 0.00 264.70 - 10.45 51.08 1966 0.00 0.00 0.00 8.15 0.93 0.00 44.30 2.23 0.00 0.00 0.01 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.34 0.10 3.12 0.00 0.00 60.18 - 10.45 51.08 1967 0.00 0.00 0.00 13.03 3.64 0.00 46.39 2.36 0.00 0.00 0.01 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.42 0.10 3.31 0.00 0.00 70.26 - 10.45 51.08 1968 0.00 0.00 0.00 13.23 0.65 0.00 49.10 2.39 0.00 0.00 0.02 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.44 0.11 3.35 0.00 0.00 70.28 - 10.45 51.08 1969 0.00 0.00 0.00 13.44 0.68 0.00 51.35 6.13 0.00 0.00 0.02 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.46 0.11 3.41 0.00 0.00 76.61 - 10.45 51.08 1970 0.00 0.00 0.00 13.47 0.67 0.00 53.37 1.78 0.00 0.00 0.02 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.45 0.11 3.38 0.00 0.00 74.25 - 10.45 51.08 1971 0.00 0.00 0.00 13.46 0.65 0.00 54.95 1.88 0.00 0.00 0.02 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.41 0.11 3.29 0.00 0.00 75.77 - 10.45 51.08 1972 0.00 0.00 0.00 12.97 0.64 0.00 56.44 1.86 0.00 0.00 0.02 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.39 0.11 3.25 0.00 0.00 76.68 - 10.45 51.08 1973 0.00 0.00 0.00 13.38 0.63 0.00 57.98 1.81 0.00 0.00 0.02 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.36 0.10 3.17 0.00 0.00 78.45 - 10.45 51.08 1974 0.00 0.00 0.00 12.94 0.61 0.00 58.90 5.64 0.00 0.00 0.02 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.32 0.10 6.92 0.00 0.00 86.46 - 10.45 51.08 1975 0.00 0.00 0.00 13.45 0.60 0.00 59.89 1.32 0.00 0.00 0.02 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.32 0.10 2.62 0.00 0.00 79.32 - 10.45 51.08 1976 0.00 0.00 0.00 13.24 0.58 0.00 60.66 5.20 0.00 0.00 0.03 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.27 0.09 2.53 0.00 0.00 83.59 - 10.45 51.08 1977 0.00 0.00 0.00 13.08 0.55 0.00 61.49 0.80 0.00 0.00 0.03 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.19 0.09 6.28 0.00 0.00 83.50 - 10.45 51.08 1978 0.00 0.00 0.00 12.56 0.53 0.00 62.27 0.78 0.00 0.00 0.03 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.16 0.09 1.94 0.00 0.00 79.35 - 10.45 51.08 1979 0.00 0.00 0.00 12.52 0.51 0.00 62.65 0.75 0.00 0.00 0.03 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.13 0.08 1.89 0.00 0.00 79.56 - 10.45 51.08 1980 0.00 0.00 0.00 137.50 0.50 0.00 62.79 0.73 0.00 0.00 0.03 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.10 0.08 1.83 0.00 0.00 204.55 - 10.45 51.08 1981 0.00 0.00 0.00 6.09 0.48 0.00 62.85 0.70 0.00 0.00 0.03 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.05 0.08 1.75 0.00 0.00 73.03 - 10.45 51.08 1982 0.00 0.00 0.00 6.11 0.48 0.00 63.71 4.75 0.00 0.00 0.03 0.00 0.00 0.00 0.00 0.00 0.00 0.00 5.09 0.08 1.77 0.00 0.00 82.01 - 10.45 51.08 1983 0.00 0.00 0.00 6.02 0.46 0.00 65.02 0.30 0.00 0.00 0.03 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.72 0.08 1.70 0.00 0.00 78.33 - 10.45 51.08 1984 0.00 0.00 0.00 5.80 0.45 0.00 66.40 0.33 0.00 0.00 0.03 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.29 1.27 1.65 0.00 0.00 76.22 - 10.45 51.08 1985 0.00 0.00 0.00 5.85 0.43 0.00 67.12 0.32 0.00 0.00 0.03 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.32 0.00 1.59 0.00 0.00 75.66 - 10.45 51.08 1986 0.00 0.00 0.00 5.85 0.43 0.00 68.02 0.31 0.00 0.00 0.03 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.31 0.00 1.56 0.00 0.00 76.52 - 10.45 51.08 1987 0.00 0.00 0.00 5.71 0.40 0.00 69.30 0.30 0.00 0.00 0.04 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.30 0.00 1.49 0.00 0.00 77.54 - 10.45 51.08 1988 0.00 0.00 0.00 5.74 0.39 0.00 70.12 0.29 0.00 0.00 0.04 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.29 0.00 1.44 0.00 0.00 78.29 - 10.45 51.08 1989 0.00 0.00 0.00 5.64 0.38 0.00 70.89 0.28 0.00 0.00 0.04 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.28 0.00 1.41 0.00 0.00 78.92 - 10.45 51.08 1990 0.00 0.00 0.00 5.62 3.37 0.00 72.38 0.28 0.00 0.00 0.04 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.28 0.00 1.38 0.00 0.00 83.35 - 10.45 51.08 1991 0.00 0.00 0.00 5.65 3.20 0.00 74.45 0.28 0.00 0.00 0.04 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.28 0.00 1.38 0.00 0.00 85.26 - 10.45 51.08 1992 0.00 0.00 0.00 5.60 0.00 0.00 75.85 0.26 0.00 0.00 0.04 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.26 0.00 1.32 0.00 0.00 83.33 - 10.45 51.08 1993 0.00 0.00 0.00 5.40 0.00 0.00 75.83 0.24 0.00 0.00 0.04 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.24 0.00 5.38 0.00 0.00 87.14 - 10.45 51.08 1994 0.00 0.00 0.00 5.31 0.00 0.00 76.46 0.23 0.00 0.00 0.04 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.23 0.00 0.94 0.00 0.00 83.22 - 10.45 51.08 1995 0.00 0.00 0.00 5.16 0.00 0.00 76.84 0.22 0.00 0.00 0.04 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.22 0.00 0.87 0.00 0.00 83.35 - 10.45 51.08 1996 0.00 0.00 0.00 5.02 0.00 0.00 76.77 0.20 0.00 0.00 0.04 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.20 0.00 0.80 0.00 0.00 83.03 - 10.45 51.08 1997 0.00 0.00 0.00 4.87 0.00 0.00 76.33 0.19 0.00 0.00 0.03 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.19 0.00 0.75 0.00 0.00 82.36 - 10.45 51.08 1998 0.00 0.00 0.00 156.01 0.00 0.00 76.65 0.18 0.00 0.00 0.03 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.18 0.00 0.72 0.00 0.00 233.77 - 10.45 51.08 1999 0.00 0.00 0.00 0.00 0.00 0.00 76.86 0.17 0.00 0.00 0.03 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.17 0.00 0.68 0.00 0.00 77.91 - 10.45 51.08 2000 0.00 0.00 0.00 0.00 0.00 0.00 77.66 0.17 0.00 0.00 0.03 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.17 0.00 4.84 0.00 0.00 82.86 - 10.45 51.08 2001 0.00 0.00 0.00 0.00 0.00 0.00 78.71 0.16 0.00 0.00 0.03 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.16 0.00 0.47 0.00 0.00 79.53 - 10.45 51.08 2002 0.00 0.00 0.00 0.00 0.00 0.00 79.39 0.15 0.00 0.00 0.03 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.15 0.00 0.45 0.00 0.00 80.17 - 10.45 51.08 2003 0.00 0.00 0.00 0.00 0.00 0.00 79.51 0.14 0.00 0.00 0.03 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.14 0.00 0.43 0.00 0.00 80.25 - 10.45 51.08 2004 0.00 0.00 0.00 0.00 0.00 0.00 80.00 4.40 0.00 0.00 0.03 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.13 0.00 0.39 0.00 0.00 84.95 - 10.45 51.08 2005 0.00 0.00 0.00 0.00 0.00 0.00 81.04 0.00 0.00 0.00 0.03 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.13 0.00 0.38 0.00 0.00 81.59 - 10.45 51.08 2006 0.00 0.00 0.00 0.00 0.00 0.00 82.52 0.00 0.00 0.00 0.03 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.12 0.00 0.36 0.00 0.00 83.04 - 10.45 51.08 2007 0.00 0.00 0.00 0.00 0.00 0.00 83.63 0.00 0.00 0.00 0.03 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.11 0.00 4.52 0.00 0.00 88.29 - 10.45 51.08 2008 0.00 0.00 0.00 0.00 0.00 0.00 84.22 0.00 0.00 0.00 0.03 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.11 0.00 0.21 0.00 0.00 84.56 - 10.45 51.08 2009 0.00 0.00 0.00 0.00 0.00 0.00 84.57 0.00 0.00 0.00 0.03 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.10 0.00 0.20 0.00 0.00 84.90 - 10.45 51.08 2010 0.00 0.00 0.00 0.00 0.00 0.00 84.49 0.00 0.00 0.00 0.03 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.09 0.00 0.19 0.00 0.00 84.80 - 10.45 51.08 2011 0.00 0.00 0.00 0.00 0.00 0.00 84.41 0.00 0.00 0.00 0.03 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.09 0.00 0.17 0.00 0.00 84.70 - 10.45 51.08 2012 0.00 0.00 0.00 0.00 0.00 0.00 84.91 0.00 0.00 0.00 0.03 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.08 0.00 0.16 0.00 0.00 85.18 diff --git a/rLPJGUESS/inst/extdata/outputsForTests/run_iffire/outDirectory/nmass.out b/rLPJGUESS/inst/extdata/outputsForTests/run_iffire/outDirectory/nmass.out deleted file mode 100644 index d52ebb1..0000000 --- a/rLPJGUESS/inst/extdata/outputsForTests/run_iffire/outDirectory/nmass.out +++ /dev/null @@ -1,63 +0,0 @@ - Lon Lat Year Abi_alb BES Bet_pen Bet_pub Car_bet Cor_ave Fag_syl Fra_exc Jun_oxy MRS Pic_abi Pic_sit Pin_syl Pin_hal Pop_tre Que_coc Que_ile Que_pub Que_rob Til_cor Ulm_gla C3_gr C4_gr Total - 10.45 51.08 1951 0.00 0.00 0.00 607.28 9.58 0.00 124.03 22.11 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 12.55 2.11 34.60 0.00 0.00 812.25 - 10.45 51.08 1952 0.00 0.00 0.00 541.95 9.70 0.00 129.08 22.43 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 12.74 2.12 35.10 0.00 0.00 753.11 - 10.45 51.08 1953 0.00 0.00 0.00 553.18 9.82 0.00 135.04 22.77 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 12.93 2.14 35.64 0.00 0.00 771.52 - 10.45 51.08 1954 0.00 0.00 0.00 565.85 10.01 0.00 142.17 23.27 0.00 0.00 0.01 0.00 0.00 0.00 0.00 0.00 0.00 0.00 13.22 2.17 36.43 0.00 0.00 793.13 - 10.45 51.08 1955 0.00 0.00 0.00 493.05 10.10 0.00 147.51 23.52 0.00 0.00 0.01 0.00 0.00 0.00 0.00 0.00 0.00 0.00 13.36 2.18 36.82 0.00 0.00 726.55 - 10.45 51.08 1956 0.00 0.00 0.00 501.23 10.22 0.00 153.02 20.43 0.00 0.00 0.01 0.00 0.00 0.00 0.00 0.00 0.00 0.00 13.54 2.19 33.92 0.00 0.00 734.57 - 10.45 51.08 1957 0.00 0.00 0.00 511.24 10.35 0.00 159.38 17.28 0.00 0.00 0.01 0.00 0.00 0.00 0.00 0.00 0.00 0.00 13.74 2.21 30.98 0.00 0.00 745.19 - 10.45 51.08 1958 0.00 0.00 0.00 522.51 10.47 0.00 167.00 17.51 0.00 0.00 0.01 0.00 0.00 0.00 0.00 0.00 0.00 0.00 13.93 2.23 31.40 0.00 0.00 765.06 - 10.45 51.08 1959 0.00 0.00 0.00 354.19 10.58 0.00 173.30 17.72 0.00 0.00 0.01 0.00 0.00 0.00 0.00 0.00 0.00 0.00 14.10 2.24 31.78 0.00 0.00 603.93 - 10.45 51.08 1960 0.00 0.00 0.00 367.19 10.85 0.00 186.39 18.24 0.00 0.00 0.01 0.00 0.00 0.00 0.00 0.00 0.00 0.00 14.51 2.29 29.08 0.00 0.00 628.57 - 10.45 51.08 1961 0.00 0.00 0.00 376.65 11.01 0.00 197.24 18.53 0.00 0.00 0.02 0.00 0.00 0.00 0.00 0.00 0.00 0.00 14.74 1.15 29.54 0.00 0.00 648.89 - 10.45 51.08 1962 0.00 0.00 0.00 382.05 11.17 0.00 206.96 18.85 0.00 0.00 0.02 0.00 0.00 0.00 0.00 0.00 0.00 0.00 11.25 1.17 30.06 0.00 0.00 661.53 - 10.45 51.08 1963 0.00 0.00 0.00 391.72 8.50 0.00 217.33 19.14 0.00 0.00 0.02 0.00 0.00 0.00 0.00 0.00 0.00 0.00 11.55 1.18 30.52 0.00 0.00 679.95 - 10.45 51.08 1964 0.00 0.00 0.00 400.69 8.61 0.00 227.94 19.41 0.00 0.00 0.02 0.00 0.00 0.00 0.00 0.00 0.00 0.00 11.71 1.19 27.09 0.00 0.00 696.66 - 10.45 51.08 1965 0.00 0.00 0.00 405.93 8.69 0.00 238.16 19.63 0.00 0.00 0.02 0.00 0.00 0.00 0.00 0.00 0.00 0.00 11.84 1.20 27.41 0.00 0.00 712.88 - 10.45 51.08 1966 0.00 0.00 0.00 207.72 8.76 0.00 248.52 19.80 0.00 0.00 0.02 0.00 0.00 0.00 0.00 0.00 0.00 0.00 11.95 1.20 27.65 0.00 0.00 525.62 - 10.45 51.08 1967 0.00 0.00 0.00 217.28 8.96 0.00 263.79 20.30 0.00 0.00 0.03 0.00 0.00 0.00 0.00 0.00 0.00 0.00 12.25 1.22 28.35 0.00 0.00 552.19 - 10.45 51.08 1968 0.00 0.00 0.00 221.70 6.05 0.00 277.99 20.58 0.00 0.00 0.04 0.00 0.00 0.00 0.00 0.00 0.00 0.00 12.41 1.23 28.75 0.00 0.00 568.77 - 10.45 51.08 1969 0.00 0.00 0.00 226.23 6.15 0.00 291.85 20.90 0.00 0.00 0.05 0.00 0.00 0.00 0.00 0.00 0.00 0.00 12.61 1.25 29.19 0.00 0.00 588.23 - 10.45 51.08 1970 0.00 0.00 0.00 230.08 6.19 0.00 304.58 16.85 0.00 0.00 0.05 0.00 0.00 0.00 0.00 0.00 0.00 0.00 12.70 1.25 29.41 0.00 0.00 601.12 - 10.45 51.08 1971 0.00 0.00 0.00 233.83 6.21 0.00 316.15 17.06 0.00 0.00 0.05 0.00 0.00 0.00 0.00 0.00 0.00 0.00 12.75 1.25 29.52 0.00 0.00 616.80 - 10.45 51.08 1972 0.00 0.00 0.00 236.71 6.24 0.00 328.86 17.16 0.00 0.00 0.05 0.00 0.00 0.00 0.00 0.00 0.00 0.00 12.83 1.26 29.71 0.00 0.00 632.82 - 10.45 51.08 1973 0.00 0.00 0.00 241.38 6.25 0.00 340.13 17.23 0.00 0.00 0.05 0.00 0.00 0.00 0.00 0.00 0.00 0.00 12.88 1.26 29.82 0.00 0.00 649.00 - 10.45 51.08 1974 0.00 0.00 0.00 244.08 6.27 0.00 350.10 17.28 0.00 0.00 0.05 0.00 0.00 0.00 0.00 0.00 0.00 0.00 12.91 1.26 29.90 0.00 0.00 661.85 - 10.45 51.08 1975 0.00 0.00 0.00 249.03 6.31 0.00 361.22 13.06 0.00 0.00 0.06 0.00 0.00 0.00 0.00 0.00 0.00 0.00 13.01 1.27 25.84 0.00 0.00 669.79 - 10.45 51.08 1976 0.00 0.00 0.00 252.01 6.30 0.00 370.09 13.06 0.00 0.00 0.06 0.00 0.00 0.00 0.00 0.00 0.00 0.00 13.02 1.26 25.85 0.00 0.00 681.65 - 10.45 51.08 1977 0.00 0.00 0.00 255.24 6.27 0.00 381.42 8.67 0.00 0.00 0.06 0.00 0.00 0.00 0.00 0.00 0.00 0.00 12.96 1.26 25.73 0.00 0.00 691.60 - 10.45 51.08 1978 0.00 0.00 0.00 257.71 6.28 0.00 390.68 8.69 0.00 0.00 0.06 0.00 0.00 0.00 0.00 0.00 0.00 0.00 13.00 1.26 21.51 0.00 0.00 699.18 - 10.45 51.08 1979 0.00 0.00 0.00 260.94 6.29 0.00 399.58 8.71 0.00 0.00 0.06 0.00 0.00 0.00 0.00 0.00 0.00 0.00 13.02 1.26 21.55 0.00 0.00 711.42 - 10.45 51.08 1980 0.00 0.00 0.00 263.00 6.29 0.00 406.88 8.72 0.00 0.00 0.07 0.00 0.00 0.00 0.00 0.00 0.00 0.00 13.04 1.26 21.58 0.00 0.00 720.84 - 10.45 51.08 1981 0.00 0.00 0.00 133.16 6.28 0.00 414.70 8.72 0.00 0.00 0.07 0.00 0.00 0.00 0.00 0.00 0.00 0.00 13.03 1.26 21.56 0.00 0.00 598.78 - 10.45 51.08 1982 0.00 0.00 0.00 135.00 6.34 0.00 427.98 8.80 0.00 0.00 0.07 0.00 0.00 0.00 0.00 0.00 0.00 0.00 13.15 1.27 21.76 0.00 0.00 614.36 - 10.45 51.08 1983 0.00 0.00 0.00 136.40 6.33 0.00 439.93 4.40 0.00 0.00 0.08 0.00 0.00 0.00 0.00 0.00 0.00 0.00 8.76 1.27 21.76 0.00 0.00 618.92 - 10.45 51.08 1984 0.00 0.00 0.00 137.73 6.34 0.00 454.71 4.45 0.00 0.00 0.08 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.39 1.27 21.81 0.00 0.00 630.78 - 10.45 51.08 1985 0.00 0.00 0.00 139.24 6.34 0.00 463.10 4.44 0.00 0.00 0.08 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.44 0.00 21.80 0.00 0.00 639.44 - 10.45 51.08 1986 0.00 0.00 0.00 140.94 6.36 0.00 477.31 4.46 0.00 0.00 0.08 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.45 0.00 21.88 0.00 0.00 655.49 - 10.45 51.08 1987 0.00 0.00 0.00 142.25 6.35 0.00 490.23 4.46 0.00 0.00 0.09 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.45 0.00 21.86 0.00 0.00 669.68 - 10.45 51.08 1988 0.00 0.00 0.00 143.90 6.35 0.00 501.57 4.46 0.00 0.00 0.09 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.45 0.00 21.87 0.00 0.00 682.68 - 10.45 51.08 1989 0.00 0.00 0.00 145.20 6.36 0.00 514.16 4.47 0.00 0.00 0.09 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.46 0.00 21.93 0.00 0.00 696.67 - 10.45 51.08 1990 0.00 0.00 0.00 146.81 6.38 0.00 530.99 4.48 0.00 0.00 0.10 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.47 0.00 21.99 0.00 0.00 715.21 - 10.45 51.08 1991 0.00 0.00 0.00 148.60 3.20 0.00 549.09 4.51 0.00 0.00 0.10 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.50 0.00 22.11 0.00 0.00 732.09 - 10.45 51.08 1992 0.00 0.00 0.00 150.05 0.00 0.00 562.22 4.50 0.00 0.00 0.10 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.49 0.00 22.08 0.00 0.00 743.45 - 10.45 51.08 1993 0.00 0.00 0.00 150.89 0.00 0.00 570.90 4.48 0.00 0.00 0.10 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.47 0.00 21.99 0.00 0.00 752.84 - 10.45 51.08 1994 0.00 0.00 0.00 152.14 0.00 0.00 584.25 4.48 0.00 0.00 0.10 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.47 0.00 17.58 0.00 0.00 763.02 - 10.45 51.08 1995 0.00 0.00 0.00 153.13 0.00 0.00 594.80 4.46 0.00 0.00 0.09 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.45 0.00 17.51 0.00 0.00 774.45 - 10.45 51.08 1996 0.00 0.00 0.00 154.06 0.00 0.00 604.25 4.44 0.00 0.00 0.09 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.43 0.00 17.43 0.00 0.00 784.71 - 10.45 51.08 1997 0.00 0.00 0.00 154.94 0.00 0.00 612.65 4.43 0.00 0.00 0.09 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.42 0.00 17.39 0.00 0.00 793.92 - 10.45 51.08 1998 0.00 0.00 0.00 156.01 0.00 0.00 623.83 4.42 0.00 0.00 0.09 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.42 0.00 17.36 0.00 0.00 806.14 - 10.45 51.08 1999 0.00 0.00 0.00 0.00 0.00 0.00 635.14 4.42 0.00 0.00 0.09 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.41 0.00 17.35 0.00 0.00 661.42 - 10.45 51.08 2000 0.00 0.00 0.00 0.00 0.00 0.00 650.67 4.43 0.00 0.00 0.09 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.42 0.00 17.36 0.00 0.00 676.96 - 10.45 51.08 2001 0.00 0.00 0.00 0.00 0.00 0.00 664.26 4.42 0.00 0.00 0.09 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.41 0.00 13.01 0.00 0.00 686.19 - 10.45 51.08 2002 0.00 0.00 0.00 0.00 0.00 0.00 677.82 4.42 0.00 0.00 0.09 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.41 0.00 13.00 0.00 0.00 699.73 - 10.45 51.08 2003 0.00 0.00 0.00 0.00 0.00 0.00 687.83 4.41 0.00 0.00 0.09 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.41 0.00 12.99 0.00 0.00 709.72 - 10.45 51.08 2004 0.00 0.00 0.00 0.00 0.00 0.00 700.97 4.40 0.00 0.00 0.09 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.39 0.00 12.95 0.00 0.00 722.79 - 10.45 51.08 2005 0.00 0.00 0.00 0.00 0.00 0.00 718.81 0.00 0.00 0.00 0.09 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.40 0.00 12.96 0.00 0.00 736.26 - 10.45 51.08 2006 0.00 0.00 0.00 0.00 0.00 0.00 735.96 0.00 0.00 0.00 0.09 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.39 0.00 12.95 0.00 0.00 753.39 - 10.45 51.08 2007 0.00 0.00 0.00 0.00 0.00 0.00 750.81 0.00 0.00 0.00 0.08 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.38 0.00 12.91 0.00 0.00 768.18 - 10.45 51.08 2008 0.00 0.00 0.00 0.00 0.00 0.00 764.70 0.00 0.00 0.00 0.09 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.38 0.00 8.61 0.00 0.00 777.77 - 10.45 51.08 2009 0.00 0.00 0.00 0.00 0.00 0.00 777.09 0.00 0.00 0.00 0.09 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.37 0.00 8.60 0.00 0.00 790.14 - 10.45 51.08 2010 0.00 0.00 0.00 0.00 0.00 0.00 788.60 0.00 0.00 0.00 0.09 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.37 0.00 8.59 0.00 0.00 801.64 - 10.45 51.08 2011 0.00 0.00 0.00 0.00 0.00 0.00 799.71 0.00 0.00 0.00 0.08 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.36 0.00 8.57 0.00 0.00 812.72 - 10.45 51.08 2012 0.00 0.00 0.00 0.00 0.00 0.00 815.60 0.00 0.00 0.00 0.08 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.36 0.00 8.57 0.00 0.00 828.62 diff --git a/rLPJGUESS/inst/extdata/outputsForTests/run_iffire/outDirectory/npool.out b/rLPJGUESS/inst/extdata/outputsForTests/run_iffire/outDirectory/npool.out deleted file mode 100644 index ecf46ca..0000000 --- a/rLPJGUESS/inst/extdata/outputsForTests/run_iffire/outDirectory/npool.out +++ /dev/null @@ -1,63 +0,0 @@ - Lon Lat Year VegN LitterN SoilN Total - 10.45 51.08 1951 0.0812 0.0455 1.2499 1.3766 - 10.45 51.08 1952 0.0753 0.0508 1.2500 1.3762 - 10.45 51.08 1953 0.0772 0.0485 1.2502 1.3759 - 10.45 51.08 1954 0.0793 0.0476 1.2503 1.3772 - 10.45 51.08 1955 0.0727 0.0542 1.2517 1.3786 - 10.45 51.08 1956 0.0735 0.0538 1.2529 1.3802 - 10.45 51.08 1957 0.0745 0.0526 1.2533 1.3804 - 10.45 51.08 1958 0.0765 0.0513 1.2533 1.3811 - 10.45 51.08 1959 0.0604 0.0644 1.2552 1.3799 - 10.45 51.08 1960 0.0629 0.0629 1.2559 1.3817 - 10.45 51.08 1961 0.0649 0.0607 1.2568 1.3825 - 10.45 51.08 1962 0.0662 0.0597 1.2575 1.3834 - 10.45 51.08 1963 0.0680 0.0588 1.2580 1.3848 - 10.45 51.08 1964 0.0697 0.0572 1.2578 1.3847 - 10.45 51.08 1965 0.0713 0.0567 1.2588 1.3868 - 10.45 51.08 1966 0.0526 0.0734 1.2619 1.3878 - 10.45 51.08 1967 0.0552 0.0707 1.2628 1.3888 - 10.45 51.08 1968 0.0569 0.0691 1.2637 1.3897 - 10.45 51.08 1969 0.0588 0.0675 1.2643 1.3907 - 10.45 51.08 1970 0.0601 0.0667 1.2652 1.3919 - 10.45 51.08 1971 0.0617 0.0643 1.2656 1.3915 - 10.45 51.08 1972 0.0633 0.0639 1.2670 1.3942 - 10.45 51.08 1973 0.0649 0.0617 1.2667 1.3934 - 10.45 51.08 1974 0.0662 0.0608 1.2679 1.3949 - 10.45 51.08 1975 0.0670 0.0595 1.2679 1.3943 - 10.45 51.08 1976 0.0682 0.0575 1.2675 1.3931 - 10.45 51.08 1977 0.0692 0.0576 1.2686 1.3953 - 10.45 51.08 1978 0.0699 0.0569 1.2692 1.3960 - 10.45 51.08 1979 0.0711 0.0557 1.2691 1.3959 - 10.45 51.08 1980 0.0721 0.0545 1.2690 1.3956 - 10.45 51.08 1981 0.0599 0.0652 1.2706 1.3957 - 10.45 51.08 1982 0.0614 0.0618 1.2697 1.3929 - 10.45 51.08 1983 0.0619 0.0606 1.2697 1.3923 - 10.45 51.08 1984 0.0631 0.0608 1.2708 1.3946 - 10.45 51.08 1985 0.0639 0.0589 1.2711 1.3939 - 10.45 51.08 1986 0.0655 0.0577 1.2707 1.3939 - 10.45 51.08 1987 0.0670 0.0574 1.2714 1.3958 - 10.45 51.08 1988 0.0683 0.0550 1.2710 1.3942 - 10.45 51.08 1989 0.0697 0.0531 1.2702 1.3929 - 10.45 51.08 1990 0.0715 0.0516 1.2696 1.3928 - 10.45 51.08 1991 0.0732 0.0504 1.2688 1.3924 - 10.45 51.08 1992 0.0743 0.0495 1.2681 1.3919 - 10.45 51.08 1993 0.0753 0.0490 1.2682 1.3925 - 10.45 51.08 1994 0.0763 0.0481 1.2675 1.3919 - 10.45 51.08 1995 0.0774 0.0474 1.2674 1.3923 - 10.45 51.08 1996 0.0785 0.0476 1.2678 1.3938 - 10.45 51.08 1997 0.0794 0.0459 1.2673 1.3925 - 10.45 51.08 1998 0.0806 0.0449 1.2666 1.3921 - 10.45 51.08 1999 0.0661 0.0577 1.2673 1.3911 - 10.45 51.08 2000 0.0677 0.0558 1.2667 1.3902 - 10.45 51.08 2001 0.0686 0.0548 1.2665 1.3900 - 10.45 51.08 2002 0.0700 0.0540 1.2669 1.3908 - 10.45 51.08 2003 0.0710 0.0518 1.2659 1.3886 - 10.45 51.08 2004 0.0723 0.0506 1.2656 1.3885 - 10.45 51.08 2005 0.0736 0.0499 1.2652 1.3887 - 10.45 51.08 2006 0.0753 0.0486 1.2646 1.3885 - 10.45 51.08 2007 0.0768 0.0478 1.2647 1.3893 - 10.45 51.08 2008 0.0778 0.0467 1.2636 1.3881 - 10.45 51.08 2009 0.0790 0.0458 1.2631 1.3879 - 10.45 51.08 2010 0.0802 0.0455 1.2631 1.3887 - 10.45 51.08 2011 0.0813 0.0439 1.2623 1.3875 - 10.45 51.08 2012 0.0829 0.0429 1.2616 1.3874 diff --git a/rLPJGUESS/inst/extdata/outputsForTests/run_iffire/outDirectory/nsources.out b/rLPJGUESS/inst/extdata/outputsForTests/run_iffire/outDirectory/nsources.out deleted file mode 100644 index c53aec0..0000000 --- a/rLPJGUESS/inst/extdata/outputsForTests/run_iffire/outDirectory/nsources.out +++ /dev/null @@ -1,63 +0,0 @@ - Lon Lat Year dep fix fert input min imm netmin Total - 10.45 51.08 1951 11.23 2.39 0.00 13.62 123.17 46.77 76.40 90.02 - 10.45 51.08 1952 11.23 2.24 0.00 13.47 132.91 45.69 87.21 100.69 - 10.45 51.08 1953 11.23 2.36 0.00 13.60 147.56 59.69 87.87 101.47 - 10.45 51.08 1954 11.23 2.78 0.00 14.01 119.54 42.17 77.37 91.38 - 10.45 51.08 1955 11.23 2.65 0.00 13.88 110.43 43.50 66.93 80.81 - 10.45 51.08 1956 11.23 2.77 0.00 14.00 106.53 41.85 64.68 78.69 - 10.45 51.08 1957 11.23 2.80 0.00 14.03 130.36 48.68 81.68 95.71 - 10.45 51.08 1958 11.23 2.50 0.00 13.73 124.90 43.14 81.76 95.49 - 10.45 51.08 1959 11.23 2.36 0.00 13.59 154.06 69.64 84.42 98.01 - 10.45 51.08 1960 14.10 2.85 0.00 16.95 119.54 52.35 67.19 84.14 - 10.45 51.08 1961 14.10 2.84 0.00 16.94 139.17 61.83 77.34 94.28 - 10.45 51.08 1962 14.10 2.69 0.00 16.79 123.23 48.18 75.05 91.84 - 10.45 51.08 1963 14.10 2.60 0.00 16.70 116.78 42.58 74.20 90.91 - 10.45 51.08 1964 14.10 2.25 0.00 16.35 139.10 46.25 92.85 109.20 - 10.45 51.08 1965 14.10 2.71 0.00 16.81 108.69 40.28 68.41 85.22 - 10.45 51.08 1966 14.10 2.48 0.00 16.58 124.24 57.59 66.65 83.23 - 10.45 51.08 1967 14.10 2.56 0.00 16.66 136.09 58.40 77.69 94.35 - 10.45 51.08 1968 14.10 2.78 0.00 16.88 130.08 52.36 77.72 94.60 - 10.45 51.08 1969 14.10 2.49 0.00 16.59 125.52 45.03 80.49 97.08 - 10.45 51.08 1970 16.97 2.33 0.00 19.30 119.12 42.62 76.51 95.81 - 10.45 51.08 1971 16.97 2.41 0.00 19.38 148.20 54.53 93.67 113.05 - 10.45 51.08 1972 16.97 2.73 0.00 19.70 107.43 42.17 65.26 84.96 - 10.45 51.08 1973 16.97 2.00 0.00 18.97 147.29 46.55 100.74 119.72 - 10.45 51.08 1974 16.97 2.54 0.00 19.51 123.79 47.42 76.37 95.88 - 10.45 51.08 1975 16.97 2.03 0.00 19.00 151.69 51.71 99.98 118.98 - 10.45 51.08 1976 16.97 2.04 0.00 19.01 155.58 51.86 103.72 122.73 - 10.45 51.08 1977 16.97 2.66 0.00 19.63 112.39 41.51 70.88 90.51 - 10.45 51.08 1978 16.97 2.48 0.00 19.45 127.49 43.02 84.47 103.92 - 10.45 51.08 1979 16.97 2.16 0.00 19.13 132.60 39.85 92.75 111.88 - 10.45 51.08 1980 17.99 2.23 0.00 20.22 134.11 42.42 91.69 111.92 - 10.45 51.08 1981 17.99 2.06 0.00 20.06 129.24 46.95 82.29 102.34 - 10.45 51.08 1982 17.99 1.84 0.00 19.84 177.84 62.51 115.33 135.16 - 10.45 51.08 1983 17.99 1.66 0.00 19.66 149.12 55.83 93.30 112.95 - 10.45 51.08 1984 17.99 2.34 0.00 20.34 107.37 40.39 66.97 87.31 - 10.45 51.08 1985 17.99 2.08 0.00 20.07 141.66 50.12 91.54 111.61 - 10.45 51.08 1986 17.99 1.91 0.00 19.90 132.00 39.93 92.08 111.98 - 10.45 51.08 1987 17.99 2.19 0.00 20.19 107.57 35.51 72.07 92.25 - 10.45 51.08 1988 17.99 1.87 0.00 19.86 159.43 53.63 105.80 125.67 - 10.45 51.08 1989 17.99 2.06 0.00 20.06 159.70 54.50 105.21 125.26 - 10.45 51.08 1990 19.66 2.18 0.00 21.84 150.17 51.06 99.11 120.95 - 10.45 51.08 1991 19.66 2.25 0.00 21.91 153.60 50.02 103.58 125.49 - 10.45 51.08 1992 19.66 1.58 0.00 21.24 147.81 46.17 101.63 122.87 - 10.45 51.08 1993 19.66 1.79 0.00 21.44 126.19 39.06 87.14 108.58 - 10.45 51.08 1994 19.66 1.80 0.00 21.46 146.61 43.29 103.32 124.77 - 10.45 51.08 1995 19.66 1.92 0.00 21.58 132.44 41.26 91.18 112.76 - 10.45 51.08 1996 19.66 2.27 0.00 21.92 108.59 30.58 78.01 99.93 - 10.45 51.08 1997 19.66 2.13 0.00 21.78 149.50 44.43 105.07 126.85 - 10.45 51.08 1998 19.66 2.27 0.00 21.93 141.28 42.03 99.25 121.18 - 10.45 51.08 1999 19.66 2.09 0.00 21.75 152.04 53.42 98.62 120.37 - 10.45 51.08 2000 21.34 1.95 0.00 23.29 154.36 51.76 102.60 125.89 - 10.45 51.08 2001 21.34 2.03 0.00 23.37 141.56 47.40 94.16 117.53 - 10.45 51.08 2002 21.34 2.18 0.00 23.52 128.71 44.26 84.44 107.97 - 10.45 51.08 2003 21.34 1.64 0.00 22.98 164.73 52.34 112.39 135.37 - 10.45 51.08 2004 21.34 2.20 0.00 23.55 142.36 47.88 94.47 118.02 - 10.45 51.08 2005 21.34 2.09 0.00 23.43 140.00 43.26 96.74 120.17 - 10.45 51.08 2006 21.34 1.87 0.00 23.22 144.94 44.71 100.23 123.45 - 10.45 51.08 2007 21.34 1.85 0.00 23.19 136.08 45.90 90.18 113.37 - 10.45 51.08 2008 21.34 2.01 0.00 23.35 156.77 46.65 110.12 133.47 - 10.45 51.08 2009 21.34 1.89 0.00 23.23 140.86 42.56 98.30 121.53 - 10.45 51.08 2010 20.03 2.10 0.00 22.13 125.36 35.04 90.32 112.45 - 10.45 51.08 2011 20.03 2.01 0.00 22.04 152.99 46.39 106.60 128.64 - 10.45 51.08 2012 20.03 2.10 0.00 22.12 146.86 45.32 101.54 123.66 diff --git a/rLPJGUESS/inst/extdata/outputsForTests/run_iffire/outDirectory/nuptake.out b/rLPJGUESS/inst/extdata/outputsForTests/run_iffire/outDirectory/nuptake.out deleted file mode 100644 index c674fa6..0000000 --- a/rLPJGUESS/inst/extdata/outputsForTests/run_iffire/outDirectory/nuptake.out +++ /dev/null @@ -1,63 +0,0 @@ - Lon Lat Year Abi_alb BES Bet_pen Bet_pub Car_bet Cor_ave Fag_syl Fra_exc Jun_oxy MRS Pic_abi Pic_sit Pin_syl Pin_hal Pop_tre Que_coc Que_ile Que_pub Que_rob Til_cor Ulm_gla C3_gr C4_gr Total - 10.45 51.08 1951 0.00 0.00 0.00 51.90 0.94 0.00 26.09 2.44 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.40 0.13 3.84 0.00 0.00 86.73 - 10.45 51.08 1952 0.00 0.00 0.00 46.11 0.96 0.00 27.23 2.50 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.43 0.13 3.92 0.00 0.00 82.28 - 10.45 51.08 1953 0.00 0.00 0.00 47.09 0.99 0.00 29.04 2.58 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.47 0.14 4.05 0.00 0.00 85.36 - 10.45 51.08 1954 0.00 0.00 0.00 49.15 1.08 0.00 31.27 2.81 0.00 0.00 0.01 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.61 0.15 4.41 0.00 0.00 90.49 - 10.45 51.08 1955 0.00 0.00 0.00 40.02 1.04 0.00 30.82 2.69 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.54 0.15 4.22 0.00 0.00 80.46 - 10.45 51.08 1956 0.00 0.00 0.00 39.88 1.07 0.00 32.09 2.38 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.59 0.15 3.97 0.00 0.00 81.13 - 10.45 51.08 1957 0.00 0.00 0.00 41.65 1.11 0.00 33.79 2.04 0.00 0.00 0.01 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.63 0.16 3.67 0.00 0.00 84.06 - 10.45 51.08 1958 0.00 0.00 0.00 43.55 1.12 0.00 36.07 2.07 0.00 0.00 0.01 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.65 0.16 3.72 0.00 0.00 88.35 - 10.45 51.08 1959 0.00 0.00 0.00 27.88 1.13 0.00 36.04 2.08 0.00 0.00 0.01 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.66 0.16 3.74 0.00 0.00 72.71 - 10.45 51.08 1960 0.00 0.00 0.00 30.87 1.30 0.00 44.02 2.41 0.00 0.00 0.01 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.93 0.19 3.85 0.00 0.00 84.59 - 10.45 51.08 1961 0.00 0.00 0.00 32.08 1.27 0.00 43.84 2.34 0.00 0.00 0.01 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.87 0.09 3.74 0.00 0.00 85.24 - 10.45 51.08 1962 0.00 0.00 0.00 29.10 1.32 0.00 45.24 2.42 0.00 0.00 0.01 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.45 0.10 3.87 0.00 0.00 83.50 - 10.45 51.08 1963 0.00 0.00 0.00 32.54 1.00 0.00 47.40 2.44 0.00 0.00 0.01 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.47 0.10 3.91 0.00 0.00 88.88 - 10.45 51.08 1964 0.00 0.00 0.00 33.14 1.02 0.00 49.76 2.47 0.00 0.00 0.01 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.48 0.10 3.46 0.00 0.00 91.45 - 10.45 51.08 1965 0.00 0.00 0.00 30.15 1.01 0.00 51.06 2.45 0.00 0.00 0.01 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.47 0.10 3.43 0.00 0.00 89.68 - 10.45 51.08 1966 0.00 0.00 0.00 16.67 1.00 0.00 52.41 2.42 0.00 0.00 0.01 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.45 0.10 3.38 0.00 0.00 77.44 - 10.45 51.08 1967 0.00 0.00 0.00 17.71 1.13 0.00 59.57 2.73 0.00 0.00 0.02 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.64 0.12 3.82 0.00 0.00 86.75 - 10.45 51.08 1968 0.00 0.00 0.00 17.44 0.73 0.00 60.60 2.64 0.00 0.00 0.03 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.59 0.12 3.70 0.00 0.00 86.85 - 10.45 51.08 1969 0.00 0.00 0.00 17.76 0.75 0.00 62.96 2.71 0.00 0.00 0.02 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.63 0.12 3.80 0.00 0.00 89.74 - 10.45 51.08 1970 0.00 0.00 0.00 17.29 0.72 0.00 64.08 2.08 0.00 0.00 0.02 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.56 0.11 3.63 0.00 0.00 89.49 - 10.45 51.08 1971 0.00 0.00 0.00 17.21 0.69 0.00 64.94 1.99 0.00 0.00 0.02 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.49 0.11 3.48 0.00 0.00 89.94 - 10.45 51.08 1972 0.00 0.00 0.00 16.34 0.69 0.00 67.65 1.99 0.00 0.00 0.02 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.49 0.11 3.48 0.00 0.00 91.77 - 10.45 51.08 1973 0.00 0.00 0.00 17.64 0.66 0.00 67.71 1.92 0.00 0.00 0.02 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.44 0.11 3.36 0.00 0.00 92.86 - 10.45 51.08 1974 0.00 0.00 0.00 16.07 0.64 0.00 67.95 1.86 0.00 0.00 0.02 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.40 0.10 3.26 0.00 0.00 91.30 - 10.45 51.08 1975 0.00 0.00 0.00 17.90 0.65 0.00 70.02 1.42 0.00 0.00 0.03 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.42 0.10 2.85 0.00 0.00 94.40 - 10.45 51.08 1976 0.00 0.00 0.00 16.43 0.60 0.00 68.75 1.32 0.00 0.00 0.03 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.32 0.10 2.64 0.00 0.00 91.18 - 10.45 51.08 1977 0.00 0.00 0.00 16.46 0.55 0.00 71.99 0.81 0.00 0.00 0.03 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.21 0.09 2.42 0.00 0.00 93.55 - 10.45 51.08 1978 0.00 0.00 0.00 15.55 0.56 0.00 70.75 0.82 0.00 0.00 0.03 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.23 0.09 2.05 0.00 0.00 91.08 - 10.45 51.08 1979 0.00 0.00 0.00 15.79 0.54 0.00 71.17 0.80 0.00 0.00 0.03 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.19 0.09 1.99 0.00 0.00 91.59 - 10.45 51.08 1980 0.00 0.00 0.00 14.57 0.52 0.00 69.95 0.77 0.00 0.00 0.03 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.15 0.08 1.91 0.00 0.00 88.98 - 10.45 51.08 1981 0.00 0.00 0.00 7.66 0.49 0.00 70.61 0.72 0.00 0.00 0.03 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.08 0.08 1.81 0.00 0.00 82.49 - 10.45 51.08 1982 0.00 0.00 0.00 7.93 0.53 0.00 76.13 0.78 0.00 0.00 0.03 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.17 0.09 1.95 0.00 0.00 88.61 - 10.45 51.08 1983 0.00 0.00 0.00 7.51 0.48 0.00 75.65 0.35 0.00 0.00 0.04 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.70 0.08 1.76 0.00 0.00 86.57 - 10.45 51.08 1984 0.00 0.00 0.00 7.35 0.47 0.00 79.81 0.35 0.00 0.00 0.03 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.35 0.00 1.75 0.00 0.00 90.11 - 10.45 51.08 1985 0.00 0.00 0.00 7.31 0.45 0.00 74.79 0.33 0.00 0.00 0.04 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.33 0.00 1.64 0.00 0.00 84.88 - 10.45 51.08 1986 0.00 0.00 0.00 7.55 0.45 0.00 81.32 0.33 0.00 0.00 0.04 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.33 0.00 1.67 0.00 0.00 91.71 - 10.45 51.08 1987 0.00 0.00 0.00 7.16 0.41 0.00 80.94 0.31 0.00 0.00 0.04 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.31 0.00 1.54 0.00 0.00 90.70 - 10.45 51.08 1988 0.00 0.00 0.00 7.36 0.41 0.00 80.64 0.30 0.00 0.00 0.04 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.30 0.00 1.50 0.00 0.00 90.55 - 10.45 51.08 1989 0.00 0.00 0.00 7.04 0.40 0.00 82.70 0.30 0.00 0.00 0.04 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.30 0.00 1.50 0.00 0.00 92.28 - 10.45 51.08 1990 0.00 0.00 0.00 7.25 0.40 0.00 87.72 0.29 0.00 0.00 0.04 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.29 0.00 1.47 0.00 0.00 97.46 - 10.45 51.08 1991 0.00 0.00 0.00 7.41 0.00 0.00 90.48 0.30 0.00 0.00 0.04 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.30 0.00 1.50 0.00 0.00 100.03 - 10.45 51.08 1992 0.00 0.00 0.00 7.10 0.00 0.00 87.58 0.27 0.00 0.00 0.04 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.27 0.00 1.35 0.00 0.00 96.62 - 10.45 51.08 1993 0.00 0.00 0.00 6.44 0.00 0.00 84.53 0.24 0.00 0.00 0.04 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.24 0.00 1.22 0.00 0.00 92.72 - 10.45 51.08 1994 0.00 0.00 0.00 6.64 0.00 0.00 89.18 0.24 0.00 0.00 0.04 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.24 0.00 0.97 0.00 0.00 97.32 - 10.45 51.08 1995 0.00 0.00 0.00 6.29 0.00 0.00 87.01 0.22 0.00 0.00 0.04 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.22 0.00 0.87 0.00 0.00 94.65 - 10.45 51.08 1996 0.00 0.00 0.00 6.09 0.00 0.00 86.30 0.20 0.00 0.00 0.03 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.20 0.00 0.79 0.00 0.00 93.62 - 10.45 51.08 1997 0.00 0.00 0.00 5.90 0.00 0.00 85.17 0.19 0.00 0.00 0.03 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.19 0.00 0.76 0.00 0.00 92.24 - 10.45 51.08 1998 0.00 0.00 0.00 0.00 0.00 0.00 87.51 0.18 0.00 0.00 0.04 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.18 0.00 0.73 0.00 0.00 88.64 - 10.45 51.08 1999 0.00 0.00 0.00 0.00 0.00 0.00 87.96 0.18 0.00 0.00 0.03 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.18 0.00 0.70 0.00 0.00 89.05 - 10.45 51.08 2000 0.00 0.00 0.00 0.00 0.00 0.00 92.38 0.17 0.00 0.00 0.03 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.17 0.00 0.70 0.00 0.00 93.46 - 10.45 51.08 2001 0.00 0.00 0.00 0.00 0.00 0.00 91.25 0.16 0.00 0.00 0.04 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.16 0.00 0.48 0.00 0.00 92.09 - 10.45 51.08 2002 0.00 0.00 0.00 0.00 0.00 0.00 92.27 0.15 0.00 0.00 0.03 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.15 0.00 0.46 0.00 0.00 93.08 - 10.45 51.08 2003 0.00 0.00 0.00 0.00 0.00 0.00 89.40 0.15 0.00 0.00 0.03 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.15 0.00 0.44 0.00 0.00 90.17 - 10.45 51.08 2004 0.00 0.00 0.00 0.00 0.00 0.00 92.65 0.00 0.00 0.00 0.03 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.13 0.00 0.39 0.00 0.00 93.20 - 10.45 51.08 2005 0.00 0.00 0.00 0.00 0.00 0.00 97.84 0.00 0.00 0.00 0.03 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.14 0.00 0.41 0.00 0.00 98.41 - 10.45 51.08 2006 0.00 0.00 0.00 0.00 0.00 0.00 98.20 0.00 0.00 0.00 0.03 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.12 0.00 0.37 0.00 0.00 98.72 - 10.45 51.08 2007 0.00 0.00 0.00 0.00 0.00 0.00 97.37 0.00 0.00 0.00 0.03 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.11 0.00 0.32 0.00 0.00 97.83 - 10.45 51.08 2008 0.00 0.00 0.00 0.00 0.00 0.00 97.51 0.00 0.00 0.00 0.04 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.11 0.00 0.22 0.00 0.00 97.88 - 10.45 51.08 2009 0.00 0.00 0.00 0.00 0.00 0.00 96.57 0.00 0.00 0.00 0.03 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.10 0.00 0.20 0.00 0.00 96.90 - 10.45 51.08 2010 0.00 0.00 0.00 0.00 0.00 0.00 96.08 0.00 0.00 0.00 0.03 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.09 0.00 0.19 0.00 0.00 96.40 - 10.45 51.08 2011 0.00 0.00 0.00 0.00 0.00 0.00 95.60 0.00 0.00 0.00 0.03 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.08 0.00 0.17 0.00 0.00 95.88 - 10.45 51.08 2012 0.00 0.00 0.00 0.00 0.00 0.00 100.30 0.00 0.00 0.00 0.03 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.09 0.00 0.17 0.00 0.00 100.59 diff --git a/rLPJGUESS/inst/extdata/outputsForTests/run_iffire/outDirectory/runoff.out b/rLPJGUESS/inst/extdata/outputsForTests/run_iffire/outDirectory/runoff.out deleted file mode 100644 index fd0bfa3..0000000 --- a/rLPJGUESS/inst/extdata/outputsForTests/run_iffire/outDirectory/runoff.out +++ /dev/null @@ -1,63 +0,0 @@ - Lon Lat Year Surf Drain Base Total - 10.45 51.08 1951 75.7 30.6 6.3 112.6 - 10.45 51.08 1952 144.2 151.5 17.3 313.1 - 10.45 51.08 1953 33.1 51.6 2.4 87.1 - 10.45 51.08 1954 18.9 68.2 1.0 88.0 - 10.45 51.08 1955 55.6 114.0 12.3 181.9 - 10.45 51.08 1956 120.4 141.1 15.4 276.9 - 10.45 51.08 1957 11.7 99.3 0.9 112.0 - 10.45 51.08 1958 101.6 148.7 9.4 259.7 - 10.45 51.08 1959 0.0 29.5 0.0 29.5 - 10.45 51.08 1960 76.7 76.7 3.3 156.7 - 10.45 51.08 1961 81.8 142.1 11.1 235.1 - 10.45 51.08 1962 3.0 65.0 2.6 70.6 - 10.45 51.08 1963 8.3 41.0 4.6 53.9 - 10.45 51.08 1964 28.0 67.8 0.9 96.7 - 10.45 51.08 1965 30.5 71.3 4.9 106.7 - 10.45 51.08 1966 92.2 151.5 8.3 252.0 - 10.45 51.08 1967 0.2 112.8 0.2 113.2 - 10.45 51.08 1968 27.4 90.3 1.8 119.5 - 10.45 51.08 1969 50.6 113.3 10.5 174.4 - 10.45 51.08 1970 40.7 147.0 5.5 193.2 - 10.45 51.08 1971 12.8 49.3 0.2 62.2 - 10.45 51.08 1972 47.6 48.6 10.2 106.5 - 10.45 51.08 1973 11.0 73.1 2.0 86.1 - 10.45 51.08 1974 25.9 136.9 1.8 164.6 - 10.45 51.08 1975 0.0 57.5 0.0 57.5 - 10.45 51.08 1976 8.0 47.4 2.1 57.5 - 10.45 51.08 1977 77.5 110.6 7.4 195.5 - 10.45 51.08 1978 2.3 69.4 0.5 72.1 - 10.45 51.08 1979 57.4 109.2 3.8 170.3 - 10.45 51.08 1980 3.9 85.6 0.5 89.9 - 10.45 51.08 1981 68.4 135.8 7.9 212.0 - 10.45 51.08 1982 11.8 49.4 1.1 62.2 - 10.45 51.08 1983 47.4 53.1 5.2 105.7 - 10.45 51.08 1984 34.5 139.6 15.3 189.5 - 10.45 51.08 1985 2.7 43.2 0.6 46.6 - 10.45 51.08 1986 40.6 113.4 7.1 161.1 - 10.45 51.08 1987 96.2 181.0 13.7 290.9 - 10.45 51.08 1988 29.8 105.4 4.8 140.0 - 10.45 51.08 1989 17.3 67.2 1.5 86.1 - 10.45 51.08 1990 6.9 70.0 2.2 79.1 - 10.45 51.08 1991 13.9 35.5 1.3 50.7 - 10.45 51.08 1992 75.4 86.2 5.6 167.2 - 10.45 51.08 1993 46.9 126.4 4.7 178.0 - 10.45 51.08 1994 53.8 141.9 3.1 198.8 - 10.45 51.08 1995 40.1 138.3 6.6 185.0 - 10.45 51.08 1996 38.6 138.4 3.5 180.5 - 10.45 51.08 1997 28.6 118.4 7.8 154.8 - 10.45 51.08 1998 37.6 147.7 4.1 189.4 - 10.45 51.08 1999 19.9 108.4 3.9 132.2 - 10.45 51.08 2000 10.4 129.7 2.0 142.1 - 10.45 51.08 2001 23.5 162.1 6.2 191.8 - 10.45 51.08 2002 127.1 212.8 7.8 347.7 - 10.45 51.08 2003 6.6 53.8 1.7 62.1 - 10.45 51.08 2004 59.3 81.8 8.1 149.2 - 10.45 51.08 2005 5.6 97.7 1.9 105.2 - 10.45 51.08 2006 20.9 94.1 2.9 117.9 - 10.45 51.08 2007 140.9 159.6 8.5 309.0 - 10.45 51.08 2008 13.5 111.1 1.3 125.9 - 10.45 51.08 2009 42.8 159.1 2.9 204.8 - 10.45 51.08 2010 116.6 147.5 14.3 278.4 - 10.45 51.08 2011 63.6 69.3 1.0 133.9 - 10.45 51.08 2012 21.7 109.4 1.3 132.4 diff --git a/rLPJGUESS/inst/extdata/outputsForTests/run_iffire/outDirectory/speciesheight.out b/rLPJGUESS/inst/extdata/outputsForTests/run_iffire/outDirectory/speciesheight.out deleted file mode 100644 index 4140dd0..0000000 --- a/rLPJGUESS/inst/extdata/outputsForTests/run_iffire/outDirectory/speciesheight.out +++ /dev/null @@ -1,63 +0,0 @@ - Lon Lat Year Abi_alb BES Bet_pen Bet_pub Car_bet Cor_ave Fag_syl Fra_exc Jun_oxy MRS Pic_abi Pic_sit Pin_syl Pin_hal Pop_tre Que_coc Que_ile Que_pub Que_rob Til_cor Ulm_gla C3_gr C4_gr - 10.45 51.08 1951 0.00 0.00 0.00 25.90 10.59 0.00 16.49 11.37 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 11.37 8.43 11.37 0.00 0.00 - 10.45 51.08 1952 0.00 0.00 0.00 26.04 10.62 0.00 16.68 11.41 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 11.41 8.44 11.41 0.00 0.00 - 10.45 51.08 1953 0.00 0.00 0.00 26.20 10.67 0.00 16.89 11.47 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 11.47 8.47 11.47 0.00 0.00 - 10.45 51.08 1954 0.00 0.00 0.00 26.32 10.69 0.00 17.04 11.50 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 11.50 8.48 11.50 0.00 0.00 - 10.45 51.08 1955 0.00 0.00 0.00 26.45 10.72 0.00 17.21 11.54 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 11.54 8.49 11.54 0.00 0.00 - 10.45 51.08 1956 0.00 0.00 0.00 26.59 10.76 0.00 17.39 11.58 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 11.58 8.51 11.58 0.00 0.00 - 10.45 51.08 1957 0.00 0.00 0.00 26.74 10.79 0.00 17.60 11.63 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 11.63 8.52 11.63 0.00 0.00 - 10.45 51.08 1958 0.00 0.00 0.00 26.86 10.82 0.00 17.76 11.66 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 11.66 8.54 11.66 0.00 0.00 - 10.45 51.08 1959 0.00 0.00 0.00 27.05 10.87 0.00 18.08 11.73 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 11.73 8.57 11.73 0.00 0.00 - 10.45 51.08 1960 0.00 0.00 0.00 27.21 10.91 0.00 18.32 11.78 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 11.78 8.59 11.78 0.00 0.00 - 10.45 51.08 1961 0.00 0.00 0.00 27.36 10.95 0.00 18.56 11.83 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 11.83 8.61 11.83 0.00 0.00 - 10.45 51.08 1962 0.00 0.00 0.00 27.51 10.99 0.00 18.78 11.88 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 11.88 8.63 11.88 0.00 0.00 - 10.45 51.08 1963 0.00 0.00 0.00 27.66 11.03 0.00 19.01 11.92 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 11.92 8.65 11.92 0.00 0.00 - 10.45 51.08 1964 0.00 0.00 0.00 27.81 11.06 0.00 19.26 11.96 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 11.96 8.67 11.96 0.00 0.00 - 10.45 51.08 1965 0.00 0.00 0.00 27.95 11.09 0.00 19.45 12.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 12.00 8.68 12.00 0.00 0.00 - 10.45 51.08 1966 0.00 0.00 0.00 28.12 11.14 0.00 19.75 12.06 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 12.06 8.71 12.06 0.00 0.00 - 10.45 51.08 1967 0.00 0.00 0.00 28.27 11.18 0.00 20.01 12.11 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 12.11 8.73 12.11 0.00 0.00 - 10.45 51.08 1968 0.00 0.00 0.00 28.43 11.22 0.00 20.27 12.16 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 12.16 8.76 12.16 0.00 0.00 - 10.45 51.08 1969 0.00 0.00 0.00 28.57 11.25 0.00 20.50 12.19 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 12.19 8.77 12.19 0.00 0.00 - 10.45 51.08 1970 0.00 0.00 0.00 28.70 11.27 0.00 20.71 12.22 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 12.22 8.78 12.22 0.00 0.00 - 10.45 51.08 1971 0.00 0.00 0.00 28.84 11.29 0.00 20.94 12.25 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 12.25 8.79 12.25 0.00 0.00 - 10.45 51.08 1972 0.00 0.00 0.00 28.97 11.31 0.00 21.14 12.27 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 12.27 8.80 12.27 0.00 0.00 - 10.45 51.08 1973 0.00 0.00 0.00 29.09 11.33 0.00 21.32 12.30 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 12.30 8.81 12.30 0.00 0.00 - 10.45 51.08 1974 0.00 0.00 0.00 29.22 11.36 0.00 21.52 12.33 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 12.33 8.83 12.33 0.00 0.00 - 10.45 51.08 1975 0.00 0.00 0.00 29.33 11.37 0.00 21.68 12.35 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 12.35 8.83 12.35 0.00 0.00 - 10.45 51.08 1976 0.00 0.00 0.00 29.44 11.38 0.00 21.87 12.35 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 12.35 8.84 12.35 0.00 0.00 - 10.45 51.08 1977 0.00 0.00 0.00 29.55 11.39 0.00 22.03 12.37 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 12.37 8.85 12.37 0.00 0.00 - 10.45 51.08 1978 0.00 0.00 0.00 29.66 11.41 0.00 22.19 12.39 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 12.39 8.85 12.39 0.00 0.00 - 10.45 51.08 1979 0.00 0.00 0.00 29.74 11.42 0.00 22.33 12.41 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 12.41 8.86 12.41 0.00 0.00 - 10.45 51.08 1980 0.00 0.00 0.00 29.83 11.43 0.00 22.47 12.42 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 12.42 8.87 12.42 0.00 0.00 - 10.45 51.08 1981 0.00 0.00 0.00 29.94 11.45 0.00 22.67 12.45 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 12.45 8.89 12.45 0.00 0.00 - 10.45 51.08 1982 0.00 0.00 0.00 30.04 11.46 0.00 22.84 12.47 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 12.47 8.89 12.47 0.00 0.00 - 10.45 51.08 1983 0.00 0.00 0.00 30.15 11.48 0.00 23.05 12.48 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 12.48 8.90 12.48 0.00 0.00 - 10.45 51.08 1984 0.00 0.00 0.00 30.22 11.49 0.00 23.18 12.49 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 12.49 0.00 12.49 0.00 0.00 - 10.45 51.08 1985 0.00 0.00 0.00 30.32 11.50 0.00 23.38 12.51 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 12.51 0.00 12.51 0.00 0.00 - 10.45 51.08 1986 0.00 0.00 0.00 30.42 11.51 0.00 23.56 12.52 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 12.52 0.00 12.52 0.00 0.00 - 10.45 51.08 1987 0.00 0.00 0.00 30.51 11.52 0.00 23.72 12.53 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 12.53 0.00 12.53 0.00 0.00 - 10.45 51.08 1988 0.00 0.00 0.00 30.59 11.53 0.00 23.89 12.55 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 12.55 0.00 12.55 0.00 0.00 - 10.45 51.08 1989 0.00 0.00 0.00 30.68 11.54 0.00 24.10 12.57 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 12.57 0.00 12.57 0.00 0.00 - 10.45 51.08 1990 0.00 0.00 0.00 30.78 11.56 0.00 24.31 12.59 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 12.59 0.00 12.59 0.00 0.00 - 10.45 51.08 1991 0.00 0.00 0.00 30.87 0.00 0.00 24.47 12.59 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 12.59 0.00 12.59 0.00 0.00 - 10.45 51.08 1992 0.00 0.00 0.00 30.93 0.00 0.00 24.59 12.60 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 12.60 0.00 12.60 0.00 0.00 - 10.45 51.08 1993 0.00 0.00 0.00 31.01 0.00 0.00 24.76 12.60 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 12.60 0.00 12.60 0.00 0.00 - 10.45 51.08 1994 0.00 0.00 0.00 31.07 0.00 0.00 24.90 12.61 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 12.61 0.00 12.61 0.00 0.00 - 10.45 51.08 1995 0.00 0.00 0.00 31.13 0.00 0.00 25.02 12.61 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 12.61 0.00 12.61 0.00 0.00 - 10.45 51.08 1996 0.00 0.00 0.00 31.19 0.00 0.00 25.14 12.61 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 12.61 0.00 12.61 0.00 0.00 - 10.45 51.08 1997 0.00 0.00 0.00 31.25 0.00 0.00 25.28 12.61 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 12.61 0.00 12.61 0.00 0.00 - 10.45 51.08 1998 0.00 0.00 0.00 0.00 0.00 0.00 25.42 12.62 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 12.62 0.00 12.62 0.00 0.00 - 10.45 51.08 1999 0.00 0.00 0.00 0.00 0.00 0.00 25.59 12.62 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 12.62 0.00 12.62 0.00 0.00 - 10.45 51.08 2000 0.00 0.00 0.00 0.00 0.00 0.00 19.76 12.63 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 12.63 0.00 12.63 0.00 0.00 - 10.45 51.08 2001 0.00 0.00 0.00 0.00 0.00 0.00 19.88 12.63 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 12.63 0.00 12.63 0.00 0.00 - 10.45 51.08 2002 0.00 0.00 0.00 0.00 0.00 0.00 19.97 12.64 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 12.64 0.00 12.64 0.00 0.00 - 10.45 51.08 2003 0.00 0.00 0.00 0.00 0.00 0.00 20.07 12.64 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 12.64 0.00 12.64 0.00 0.00 - 10.45 51.08 2004 0.00 0.00 0.00 0.00 0.00 0.00 21.84 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 12.64 0.00 12.64 0.00 0.00 - 10.45 51.08 2005 0.00 0.00 0.00 0.00 0.00 0.00 23.99 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 12.65 0.00 12.65 0.00 0.00 - 10.45 51.08 2006 0.00 0.00 0.00 0.00 0.00 0.00 24.12 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 12.65 0.00 12.65 0.00 0.00 - 10.45 51.08 2007 0.00 0.00 0.00 0.00 0.00 0.00 24.24 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 12.65 0.00 12.65 0.00 0.00 - 10.45 51.08 2008 0.00 0.00 0.00 0.00 0.00 0.00 24.36 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 12.66 0.00 12.66 0.00 0.00 - 10.45 51.08 2009 0.00 0.00 0.00 0.00 0.00 0.00 27.03 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 12.66 0.00 12.66 0.00 0.00 - 10.45 51.08 2010 0.00 0.00 0.00 0.00 0.00 0.00 27.15 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 12.66 0.00 12.66 0.00 0.00 - 10.45 51.08 2011 0.00 0.00 0.00 0.00 0.00 0.00 27.30 0.00 0.00 0.00 3.82 0.00 0.00 0.00 0.00 0.00 0.00 0.00 12.66 0.00 12.66 0.00 0.00 - 10.45 51.08 2012 0.00 0.00 0.00 0.00 0.00 0.00 27.41 0.00 0.00 0.00 3.84 0.00 0.00 0.00 0.00 0.00 0.00 0.00 12.67 0.00 12.67 0.00 0.00 diff --git a/rLPJGUESS/inst/extdata/outputsForTests/run_iffire/outDirectory/vmaxnlim.out b/rLPJGUESS/inst/extdata/outputsForTests/run_iffire/outDirectory/vmaxnlim.out deleted file mode 100644 index 9c6462e..0000000 --- a/rLPJGUESS/inst/extdata/outputsForTests/run_iffire/outDirectory/vmaxnlim.out +++ /dev/null @@ -1,63 +0,0 @@ - Lon Lat YearAbi_alb BESBet_penBet_pubCar_betCor_aveFag_sylFra_excJun_oxy MRSPic_abiPic_sitPin_sylPin_halPop_treQue_cocQue_ileQue_pubQue_robTil_corUlm_gla C3_gr C4_gr Total - 10.45 51.08 1951 0.00 0.00 0.00 1.00 1.00 0.00 1.00 1.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.00 1.00 1.00 0.00 0.00 1.00 - 10.45 51.08 1952 0.00 0.00 0.00 1.00 1.00 0.00 1.00 1.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.00 1.00 1.00 0.00 0.00 1.00 - 10.45 51.08 1953 0.00 0.00 0.00 1.00 1.00 0.00 1.00 1.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.00 1.00 1.00 0.00 0.00 1.00 - 10.45 51.08 1954 0.00 0.00 0.00 1.00 1.00 0.00 1.00 1.00 0.00 0.00 1.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.00 1.00 1.00 0.00 0.00 1.00 - 10.45 51.08 1955 0.00 0.00 0.00 1.00 1.00 0.00 1.00 1.00 0.00 0.00 1.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.00 1.00 1.00 0.00 0.00 1.00 - 10.45 51.08 1956 0.00 0.00 0.00 1.00 1.00 0.00 1.00 1.00 0.00 0.00 1.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.00 1.00 1.00 0.00 0.00 1.00 - 10.45 51.08 1957 0.00 0.00 0.00 1.00 1.00 0.00 1.00 1.00 0.00 0.00 1.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.00 1.00 1.00 0.00 0.00 1.00 - 10.45 51.08 1958 0.00 0.00 0.00 1.00 1.00 0.00 1.00 1.00 0.00 0.00 1.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.00 1.00 1.00 0.00 0.00 1.00 - 10.45 51.08 1959 0.00 0.00 0.00 1.00 1.00 0.00 1.00 1.00 0.00 0.00 1.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.00 1.00 1.00 0.00 0.00 1.00 - 10.45 51.08 1960 0.00 0.00 0.00 1.00 1.00 0.00 1.00 1.00 0.00 0.00 1.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.00 1.00 1.00 0.00 0.00 1.00 - 10.45 51.08 1961 0.00 0.00 0.00 1.00 1.00 0.00 1.00 1.00 0.00 0.00 1.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.00 1.00 1.00 0.00 0.00 1.00 - 10.45 51.08 1962 0.00 0.00 0.00 1.00 1.00 0.00 1.00 1.00 0.00 0.00 1.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.00 1.00 1.00 0.00 0.00 1.00 - 10.45 51.08 1963 0.00 0.00 0.00 1.00 1.00 0.00 1.00 1.00 0.00 0.00 1.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.00 1.00 1.00 0.00 0.00 1.00 - 10.45 51.08 1964 0.00 0.00 0.00 1.00 1.00 0.00 1.00 1.00 0.00 0.00 1.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.00 1.00 1.00 0.00 0.00 1.00 - 10.45 51.08 1965 0.00 0.00 0.00 1.00 1.00 0.00 1.00 1.00 0.00 0.00 1.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.00 1.00 1.00 0.00 0.00 1.00 - 10.45 51.08 1966 0.00 0.00 0.00 1.00 1.00 0.00 1.00 1.00 0.00 0.00 1.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.00 1.00 1.00 0.00 0.00 1.00 - 10.45 51.08 1967 0.00 0.00 0.00 1.00 1.00 0.00 1.00 1.00 0.00 0.00 1.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.00 1.00 1.00 0.00 0.00 1.00 - 10.45 51.08 1968 0.00 0.00 0.00 1.00 1.00 0.00 1.00 1.00 0.00 0.00 1.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.00 1.00 1.00 0.00 0.00 1.00 - 10.45 51.08 1969 0.00 0.00 0.00 1.00 1.00 0.00 1.00 1.00 0.00 0.00 1.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.00 1.00 1.00 0.00 0.00 1.00 - 10.45 51.08 1970 0.00 0.00 0.00 1.00 1.00 0.00 1.00 1.00 0.00 0.00 1.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.00 1.00 1.00 0.00 0.00 1.00 - 10.45 51.08 1971 0.00 0.00 0.00 1.00 1.00 0.00 1.00 1.00 0.00 0.00 1.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.00 1.00 1.00 0.00 0.00 1.00 - 10.45 51.08 1972 0.00 0.00 0.00 1.00 1.00 0.00 1.00 1.00 0.00 0.00 1.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.00 1.00 1.00 0.00 0.00 1.00 - 10.45 51.08 1973 0.00 0.00 0.00 1.00 1.00 0.00 1.00 1.00 0.00 0.00 1.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.00 1.00 1.00 0.00 0.00 1.00 - 10.45 51.08 1974 0.00 0.00 0.00 1.00 1.00 0.00 1.00 1.00 0.00 0.00 1.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.00 1.00 1.00 0.00 0.00 1.00 - 10.45 51.08 1975 0.00 0.00 0.00 1.00 1.00 0.00 1.00 1.00 0.00 0.00 1.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.00 1.00 1.00 0.00 0.00 1.00 - 10.45 51.08 1976 0.00 0.00 0.00 1.00 1.00 0.00 1.00 1.00 0.00 0.00 1.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.00 1.00 1.00 0.00 0.00 1.00 - 10.45 51.08 1977 0.00 0.00 0.00 1.00 1.00 0.00 1.00 1.00 0.00 0.00 1.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.00 1.00 1.00 0.00 0.00 1.00 - 10.45 51.08 1978 0.00 0.00 0.00 1.00 1.00 0.00 1.00 1.00 0.00 0.00 1.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.00 1.00 1.00 0.00 0.00 1.00 - 10.45 51.08 1979 0.00 0.00 0.00 1.00 1.00 0.00 1.00 1.00 0.00 0.00 1.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.00 1.00 1.00 0.00 0.00 1.00 - 10.45 51.08 1980 0.00 0.00 0.00 1.00 1.00 0.00 1.00 1.00 0.00 0.00 1.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.00 1.00 1.00 0.00 0.00 1.00 - 10.45 51.08 1981 0.00 0.00 0.00 1.00 1.00 0.00 1.00 1.00 0.00 0.00 1.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.00 1.00 1.00 0.00 0.00 1.00 - 10.45 51.08 1982 0.00 0.00 0.00 1.00 1.00 0.00 1.00 1.00 0.00 0.00 1.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.00 1.00 1.00 0.00 0.00 1.00 - 10.45 51.08 1983 0.00 0.00 0.00 1.00 1.00 0.00 1.00 1.00 0.00 0.00 1.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.00 1.00 1.00 0.00 0.00 1.00 - 10.45 51.08 1984 0.00 0.00 0.00 1.00 1.00 0.00 1.00 1.00 0.00 0.00 1.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.00 0.00 1.00 0.00 0.00 1.00 - 10.45 51.08 1985 0.00 0.00 0.00 1.00 1.00 0.00 1.00 1.00 0.00 0.00 1.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.00 0.00 1.00 0.00 0.00 1.00 - 10.45 51.08 1986 0.00 0.00 0.00 1.00 1.00 0.00 1.00 1.00 0.00 0.00 1.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.00 0.00 1.00 0.00 0.00 1.00 - 10.45 51.08 1987 0.00 0.00 0.00 1.00 1.00 0.00 1.00 1.00 0.00 0.00 1.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.00 0.00 1.00 0.00 0.00 1.00 - 10.45 51.08 1988 0.00 0.00 0.00 1.00 1.00 0.00 1.00 1.00 0.00 0.00 1.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.00 0.00 1.00 0.00 0.00 1.00 - 10.45 51.08 1989 0.00 0.00 0.00 1.00 1.00 0.00 1.00 1.00 0.00 0.00 1.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.00 0.00 1.00 0.00 0.00 1.00 - 10.45 51.08 1990 0.00 0.00 0.00 1.00 1.00 0.00 1.00 1.00 0.00 0.00 1.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.00 0.00 1.00 0.00 0.00 1.00 - 10.45 51.08 1991 0.00 0.00 0.00 1.00 0.00 0.00 1.00 1.00 0.00 0.00 1.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.00 0.00 1.00 0.00 0.00 1.00 - 10.45 51.08 1992 0.00 0.00 0.00 1.00 0.00 0.00 1.00 1.00 0.00 0.00 1.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.00 0.00 1.00 0.00 0.00 1.00 - 10.45 51.08 1993 0.00 0.00 0.00 1.00 0.00 0.00 1.00 1.00 0.00 0.00 1.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.00 0.00 1.00 0.00 0.00 1.00 - 10.45 51.08 1994 0.00 0.00 0.00 1.00 0.00 0.00 1.00 1.00 0.00 0.00 1.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.00 0.00 1.00 0.00 0.00 1.00 - 10.45 51.08 1995 0.00 0.00 0.00 1.00 0.00 0.00 1.00 1.00 0.00 0.00 1.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.00 0.00 1.00 0.00 0.00 1.00 - 10.45 51.08 1996 0.00 0.00 0.00 1.00 0.00 0.00 1.00 1.00 0.00 0.00 1.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.00 0.00 1.00 0.00 0.00 1.00 - 10.45 51.08 1997 0.00 0.00 0.00 1.00 0.00 0.00 1.00 1.00 0.00 0.00 1.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.00 0.00 1.00 0.00 0.00 1.00 - 10.45 51.08 1998 0.00 0.00 0.00 0.00 0.00 0.00 1.00 1.00 0.00 0.00 1.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.00 0.00 1.00 0.00 0.00 1.00 - 10.45 51.08 1999 0.00 0.00 0.00 0.00 0.00 0.00 1.00 1.00 0.00 0.00 1.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.00 0.00 1.00 0.00 0.00 1.00 - 10.45 51.08 2000 0.00 0.00 0.00 0.00 0.00 0.00 1.00 1.00 0.00 0.00 1.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.00 0.00 1.00 0.00 0.00 1.00 - 10.45 51.08 2001 0.00 0.00 0.00 0.00 0.00 0.00 1.00 1.00 0.00 0.00 1.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.00 0.00 1.00 0.00 0.00 1.00 - 10.45 51.08 2002 0.00 0.00 0.00 0.00 0.00 0.00 1.00 1.00 0.00 0.00 1.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.00 0.00 1.00 0.00 0.00 1.00 - 10.45 51.08 2003 0.00 0.00 0.00 0.00 0.00 0.00 1.00 1.00 0.00 0.00 1.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.00 0.00 1.00 0.00 0.00 1.00 - 10.45 51.08 2004 0.00 0.00 0.00 0.00 0.00 0.00 1.00 0.00 0.00 0.00 1.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.00 0.00 1.00 0.00 0.00 1.00 - 10.45 51.08 2005 0.00 0.00 0.00 0.00 0.00 0.00 1.00 0.00 0.00 0.00 1.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.00 0.00 1.00 0.00 0.00 1.00 - 10.45 51.08 2006 0.00 0.00 0.00 0.00 0.00 0.00 1.00 0.00 0.00 0.00 1.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.00 0.00 1.00 0.00 0.00 1.00 - 10.45 51.08 2007 0.00 0.00 0.00 0.00 0.00 0.00 1.00 0.00 0.00 0.00 1.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.00 0.00 1.00 0.00 0.00 1.00 - 10.45 51.08 2008 0.00 0.00 0.00 0.00 0.00 0.00 1.00 0.00 0.00 0.00 1.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.00 0.00 1.00 0.00 0.00 1.00 - 10.45 51.08 2009 0.00 0.00 0.00 0.00 0.00 0.00 1.00 0.00 0.00 0.00 1.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.00 0.00 1.00 0.00 0.00 1.00 - 10.45 51.08 2010 0.00 0.00 0.00 0.00 0.00 0.00 1.00 0.00 0.00 0.00 1.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.00 0.00 1.00 0.00 0.00 1.00 - 10.45 51.08 2011 0.00 0.00 0.00 0.00 0.00 0.00 1.00 0.00 0.00 0.00 1.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.00 0.00 1.00 0.00 0.00 1.00 - 10.45 51.08 2012 0.00 0.00 0.00 0.00 0.00 0.00 1.00 0.00 0.00 0.00 1.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.00 0.00 1.00 0.00 0.00 1.00 diff --git a/rLPJGUESS/inst/extdata/outputsForTests/run_npatch/europe.ins b/rLPJGUESS/inst/extdata/outputsForTests/run_npatch/europe.ins deleted file mode 100644 index 9ec17c5..0000000 --- a/rLPJGUESS/inst/extdata/outputsForTests/run_npatch/europe.ins +++ /dev/null @@ -1,1103 +0,0 @@ -!/////////////////////////////////////////////////////////////////////////////////////// -!// LPJ-GUESS INSTRUCTION SCRIPT FOR COHORT/INDIVIDUAL MODE -!// European Species -!// -!// LPJ-GUESS 3.0 -!// -!// Parameter differences with Thomas Hickler's paper: -!// -!// Hickler, T., Vohland, K., Feehan, J., Miller, P., Fronzek, S., Giesecke, T., Kuehn, I., Carter, T., Smith, B. & -!// Sykes, M. Projecting tree species-based climate-driven changes in European potential natural vegetation -!// with a generalized dynamic vegetation model. In press, Global Ecology & Biogeography. -!// -!// are commented with ! THdiff -!/////////////////////////////////////////////////////////////////////////////////////// - - -!/////////////////////////////////////////////////////////////////////////////////////// -! Output files -! - -! outputdirectory is mandatory. Should be "./" for parallel runs. -outputdirectory "/home/ramiro/Github/TestCode/LPJrunTest/runDirectory/outDirectory/" - -! Prefined yearly output -! These files may be outcommented if their output is not required. -file_cmass "cmass.out" -file_anpp "anpp.out" -file_agpp "agpp.out" -file_fpc "fpc.out" -file_aaet "aaet.out" -file_lai "lai.out" -file_cflux "cflux.out" -file_dens "dens.out" -file_runoff "runoff.out" -file_cpool "cpool.out" -file_clitter "clitter.out" -file_firert "firert.out" -file_aiso "aiso.out" -file_amon "amon.out" -file_speciesheights "speciesheight.out" - -file_nmass "nmass.out" -file_cton_leaf "cton_leaf.out" -file_ngases "ngases.out" -file_nsources "nsources.out" -file_npool "npool.out" -file_nlitter "nlitter.out" -file_nuptake "nuptake.out" -file_nflux "nflux.out" -file_vmaxnlim "vmaxnlim.out" - -! Monthly outputs -file_mnpp "mnpp.out" -file_mlai "mlai.out" -file_mrh "mrh.out" -file_mgpp "mgpp.out" -file_mra "mra.out" -file_mnee "mnee.out" -file_maet "maet.out" -file_mpet "mpet.out" -file_mevap "mevap.out" -file_mintercep "mintercep.out" -file_mrunoff "mrunoff.out" -file_mwcont_upper "mwcont_upper.out" -file_mwcont_lower "mwcont_lower.out" -file_miso "miso.out" -file_mmon "mmon.out" - -!/////////////////////////////////////////////////////////////////////////////////////// - - - -!/////////////////////////////////////////////////////////////////////////////////////// -!// RUN PARAMETERS AND OPTIONS -! - -! Settings recognised by Plib -! Run GUESS with -help option for list of keywords and their meanings - -title 'LPJ-GUESS cohort mode - European species' - -vegmode "cohort" ! "cohort", "individual" or "population" -nyear_spinup 500 ! number of years to spin up the simulation for -ifcalcsla 1 ! whether ctonto calculate SLA from leaf longevity - ! (PFT-specific value can be specified in this file instead) -ifcalccton 1 ! whether to calculate leaf C:N min from leaf longevity - ! (PFT-specific value can be specified in this file instead) -iffire 1 ! whether to implement fire (1) or not (0) -npatch 5 ! number of replicate patches to simulate -patcharea 1000 ! patch area (m2) -estinterval 1 ! years between establishment events in cohort mode -ifdisturb 1 ! whether generic patch-destroying disturbances enabled -distinterval 100 ! average return time for generic patch-destroying disturbances - ! Hickler et al. (2011) used 200 -ifbgestab 1 ! whether background establishment enabled -ifsme 1 ! whether spatial mass effect enabled -ifstochestab 1 ! whether establishment stochastic -ifstochmort 1 ! whether mortality stochastic -ifcdebt 1 ! whether to allow vegetation C storage (1) or not (0) -wateruptake "rootdist" ! "wcont", "rootdist", "smart" or "speciesspecific", - ! see documentation for water_uptake() - -!/////////////////////////////////////////////////////////////////////////////// -! PROCESS SETTINGS SPECIFIC TO NITROGEN -!/////////////////////////////////////////////////////////////////////////////// - -ifcentury 1 ! whether to use CENTURY SOM dynamics (mandatory for N cycling) -ifnlim 0 ! whether plant growth limited by available N -freenyears 100 ! number of years to spin up without N limitation (needed to build up a N pool) -nfix_a 0.102 ! first term in N fixation eqn (Conservative 0.102, Central 0.234, Upper 0.367) -nfix_b 0.524 ! second term in N fixation eqn (Conservative 0.524, Central -0.172, Upper -0.754) -nrelocfrac 0.5 ! fraction of N retranslocated prior to leaf and root shedding - - -!/////////////////////////////////////////////////////////////////////////////// -! SERIALIZATION SETTINGS -!/////////////////////////////////////////////////////////////////////////////// -state_year 500 ! year to save/start state file (no setting = after spinup) -restart 0 ! wheter to start from a state file -save_state 0 ! wheter to save a state file -state_path "" ! directory to put state files in - - -ifsmoothgreffmort 1 ! whether to vary mort_greff smoothly with growth efficiency (1) - ! or to use the standard step-function (0) - ! greff_min values below calibrated for the smooth (1) option -ifdroughtlimitedestab 1 ! whether establishment is limited by growing season drought -ifrainonwetdaysonly 1 ! whether to rain on wet days only (1), or to rain a bit every day (0) -ifbvoc 0 ! whether to include BVOC calculations (1) or not (0) - -!!!!!!!!!!!! landcover parameters !!!!!!!!!!!!!! - -run_landcover 0 ! whether to use (and change) landcover fractions (1) or not (0) - -run_urban 0 ! whether to simulate barren land (1) or not (0) -run_crop 1 ! whether to simulate crop vegetation (1) or not (0) -run_forest 0 ! whether to simulate managed forest (1) or not (0) -run_pasture 0 ! whether to simulate pasture (1) or not (0) -run_natural 0 ! whether to simulate natural vegetation (1) or not (0) -run_peatland 1 ! whether to simulate peatland (1) or not (0) - -lcfrac_fixed 0 ! use landcover fractions (%) below (1) or read from input file (0) -lc_fixed_urban 0 ! URBAN -lc_fixed_cropland 50 ! CROPLAND -lc_fixed_pasture 0 ! PASTURE -lc_fixed_forest 0 ! FOREST -lc_fixed_natural 25 ! NATURAL -lc_fixed_peatland 25 ! PEATLAND -equal_landcover_area 0 ! divide gridcell into equal active landcover fractions - -!/////////////////////////////////////////////////////////////////////////////////////// - - -!/////////////////////////////////////////////////////////////////////////////////////// -!// PARAMETERS FOR PFTS -!// Run GUESS with -help option for list of keywords and their meanings - -group "common" ( - - ! Parameters common to all PFTs - - lambda_max 0.8 ! 0.8 - emax 5 ! 5 - reprfrac 0.1 ! 0.1 - wscal_min 0.35 ! 0.35 - drought_tolerance 1e-04 ! 0.0001 - ! default value - ensures that this has little effect even if - ! ifdroughtlimitedestab is turned on - landcover "natural" - turnover_harv_prod 1 ! 1 -) - - -group "tree" ( - - ! Parameters common to all trees - - common - lifeform "tree" - pathway "c3" - rootdist 0.6 0.4 - crownarea_max 40 ! 40 - turnover_root 0.7 ! 0.7 - ltor_max 1 ! 1 - k_allom2 40 ! 40 - k_allom3 0.67 ! 0.67 - k_rp 1.6 ! 1.6 - wooddens 200 ! 200 - cton_root 29 ! 29 - cton_sap 330 ! 330 - nuptoroot 0.0028 ! 0.0028 - km_volume 1.477e-06 ! 0.000001477 - kest_repr 200 ! 200 - kest_bg 0.1 ! 0.1 - kest_pres 1 ! 1 - litterme 0.3 ! 0.3 - harv_eff 0.7 ! 0.7 - res_outtake 0.75 ! 0.75 - harvest_slow_frac 0.33 ! 0.33 - turnover_harv_prod 0.04 ! 0.04 -) - -group "shrub" ( - common - lifeform "tree" - leafphysiognomy "broadleaf" - pathway "c3" - rootdist 0.6 0.4 - crownarea_max 10 ! 10 - turnover_root 0.7 ! 0.7 - ltor_max 1 ! 1 - k_allom1 100 ! 100 - k_allom2 5 ! 5 - k_allom3 0.67 ! 0.67 - k_rp 1.6 ! 1.6 - wooddens 250 ! 250 - cton_root 29 ! 29 - cton_sap 330 ! 330 - nuptoroot 0.0028 ! 0.0028 - km_volume 1.477e-06 ! 0.000001477 - fnstorage 0.3 ! 0.3 - kest_repr 200 ! 200 - kest_bg 0.1 ! 0.1 - kest_pres 1 ! 1 - litterme 0.3 ! 0.3 - longevity 100 ! 100 -) - -group "needle_leaved" ( - leafphysiognomy "needleleaf" - k_allom1 150 ! 150 - k_latosa 4000 ! 4000 - ga 0.14 ! 0.140 -) - -group "broad_leaved" ( - leafphysiognomy "broadleaf" - k_allom1 250 ! 250 - k_latosa 5000 ! 5000 - leaflong 0.5 ! 0.5 - turnover_leaf 1 ! 1 - ga 0.04 ! 0.040 -) - -group "grass" ( - - ! Parameters common to all grasses - - common - lifeform "grass" - leafphysiognomy "broadleaf" - ltor_max 0.5 ! 0.5 - cton_root 29 ! 29 - nuptoroot 0.00551 ! 0.00551 - km_volume 1.876e-06 ! 0.000001876 - fnstorage 0.3 ! 0.3 - respcoeff 1 ! 1.0 - litterme 0.2 ! 0.2 - ga 0.03 ! 0.030 -) - - -! greff_min values below calibrated for the smooth (ifsmoothgreffmort 1) option -! Many THdiff values here -group "shade_tolerant" ( - est_max 0.05 ! 0.05 - parff_min 350000 ! 350000 - alphar 3 ! 3.0 - greff_min 0.04 ! 0.04 - turnover_sap 0.05 ! 0.05 -) - - -! So far only trial values; not in global version -group "intermediate_shade_tolerant" ( - est_max 0.15 ! 0.15 - parff_min 2e+06 ! 2000000 - alphar 7 ! 7.0 - greff_min 0.06 ! 0.06 - turnover_sap 0.075 ! 0.075 -) - - -! From global version; values from orginal European version after "!" -group "shade_intolerant" ( - est_max 0.2 ! 0.2 - parff_min 2500000 ! 2500000 - alphar 10 ! 10.0 - greff_min 0.08 ! 0.08 - turnover_sap 0.1 ! 0.1 -) - - -group "boreal_tree" ( - respcoeff 1 ! 1.0 - pstemp_min -4 ! -4 - pstemp_low 10 ! 10 - pstemp_high 25 ! 25 - pstemp_max 38 ! 38 -) - -group "temperate_tree" ( - respcoeff 1 ! 1.0 - pstemp_min -2 ! -2 - pstemp_low 15 ! 15 - pstemp_high 25 ! 25 - pstemp_max 38 ! 38 -) - - -!/////////////////////////////////////////////////////////////////////////////////////// -! PFTs and species follow -! -! THdiff notes: -! 1. Thomas Hickler didn't give the values used for the tcmax_est and twmin_est parameters -! 2. rootdist is different for (z1 in brackets): Abi_alb (0.8), Bet_pen (0.8), Bet_pub (0.8), Car_bet (0.7), -! Cor_ave (0.7), Fag_syl (0.8), Fra_exc (0.8) - - -pft "Abi_alb" ( - - include 1 ! 1 - tree - shade_tolerant - temperate_tree - needle_leaved - phenology "evergreen" - !sla 9.3 ! 9.3 - gmin 0.3 ! 0.3 - fnstorage 0.05 ! 0.05 - leaflong 3 ! 3 - turnover_leaf 0.33 ! 0.33 - phengdd5ramp 0 ! 0 - tcmin_surv -2 ! -2 - tcmin_est -2 ! -2 - tcmax_est 2 ! 2 - twmin_est 6 ! 6 - gdd5min_est 1600 ! 1600 - k_chilla 0 ! 0 - k_chillb 100 ! 100 - k_chillk 0.05 ! 0.05 - fireresist 0.1 ! 0.1 - intc 0.06 ! 0.06 - longevity 350 ! 350 - drought_tolerance 0.35 ! 0.35 - eps_iso 0.05 ! 0.05 - seas_iso 0 ! 0 - eps_mon 1.8 ! 1.8 - storfrac_mon 0.5 ! 0.5 -) - - -pft "BES" ( - - ! boreal evergreen shrub - - include 1 ! 1 - shrub - boreal_tree - shade_intolerant - rootdist 0.8 0.2 - phenology "evergreen" - crownarea_max 3 ! 3 - k_allom1 20 ! 20 - k_allom2 5 ! 5 - k_latosa 500 ! 500 - !sla 9.3 ! 9.3 - gmin 0.3 ! 0.3 - leaflong 2 ! 2 - turnover_leaf 0.5 ! 0.5 - turnover_sap 0.05 ! 0.05 - phengdd5ramp 0 ! 0 - tcmin_surv -1000 ! -1000 - tcmin_est -1000 ! -1000 - tcmax_est -1 ! -1.0 - twmin_est -1000 ! -1000 - gdd5min_est 200 ! 200 - longevity 50 ! 50 - k_chilla 0 ! 0 - k_chillb 100 ! 100 - k_chillk 0.05 ! 0.05 - fireresist 0.1 ! 0.1 - intc 0.06 ! 0.06 - drought_tolerance 0.25 ! 0.25 - eps_iso 2 ! 2.0 - seas_iso 0 ! 0 - eps_mon 4 ! 4.0 - storfrac_mon 0.5 ! 0.5 - ga 0.04 ! 0.040 -) - - -pft "Bet_pen" ( - - include 1 ! 1 - tree - shade_intolerant - temperate_tree - broad_leaved - phenology "summergreen" - !sla 24.3 ! 24.3 - gmin 0.5 ! 0.5 - fnstorage 0.15 ! 0.15 - phengdd5ramp 200 ! 200 - tcmin_surv -30 ! -30 - tcmin_est -30 ! -30 - tcmax_est 7 ! 7 - twmin_est 5 ! 5 - gdd5min_est 700 ! 700 - k_chilla 0 ! 0 - k_chillb 350 ! 350 - k_chillk 0.05 ! 0.05 - fireresist 0.1 ! 0.1 - intc 0.02 ! 0.02 - longevity 200 ! 200 - drought_tolerance 0.42 ! 0.42 - eps_iso 0.2 ! 0.2 - seas_iso 1 ! 1 - eps_mon 6 ! 6. - storfrac_mon 0 ! 0. -) - - -pft "Bet_pub" ( - - include 1 ! 1 - tree - shade_intolerant - boreal_tree - broad_leaved - phenology "summergreen" - !sla 24.3 ! 24.3 - gmin 0.5 ! 0.5 - fnstorage 0.15 ! 0.15 - phengdd5ramp 200 ! 200 - tcmin_surv -30 ! -30 - tcmin_est -30 ! -30 - tcmax_est 3 ! 3 - twmin_est 5 ! 5 - gdd5min_est 350 ! 350 - k_chilla 0 ! 0 - k_chillb 350 ! 350 - k_chillk 0.05 ! 0.05 - fireresist 0.1 ! 0.1 - intc 0.02 ! 0.02 - longevity 200 ! 200 - drought_tolerance 0.5 ! 0.5 - eps_iso 0 ! 0. - seas_iso 1 ! 1 - eps_mon 1 ! 1.0 - storfrac_mon 0 ! 0. -) - - -pft "Car_bet" ( - - include 1 ! 1 - tree - intermediate_shade_tolerant - temperate_tree - broad_leaved - phenology "summergreen" - !sla 24.3 ! 24.3 - gmin 0.5 ! 0.5 - fnstorage 0.15 ! 0.15 - phengdd5ramp 200 ! 200 - tcmin_surv -8 ! -8 - tcmin_est -8 ! -8 - tcmax_est 5 ! 5 - twmin_est 5 ! 5 - gdd5min_est 1200 ! 1200 - k_chilla 0 ! 0 - k_chillb 600 ! 600 - k_chillk 0.05 ! 0.05 - fireresist 0.1 ! 0.1 - intc 0.02 ! 0.02 - longevity 350 ! 350 - drought_tolerance 0.33 ! 0.33 - eps_iso 0 ! 0. - seas_iso 1 ! 1 - eps_mon 0.08 ! 0.08 - storfrac_mon 0 ! 0. -) - - -pft "Cor_ave" ( - - include 1 ! 1 - tree - crownarea_max 15 - broad_leaved - intermediate_shade_tolerant - temperate_tree - phenology "summergreen" - crownarea_max 15 ! 15 - k_latosa 4000 ! 4000 - !sla 12 ! 12 - gmin 0.5 ! 0.5 - fnstorage 0.15 ! 0.15 - phengdd5ramp 200 ! 200 - tcmin_surv -11 ! -11 - tcmin_est -11 ! -11 - tcmax_est 7 ! 7 - twmin_est 5 ! 5 - gdd5min_est 800 ! 800 - k_chilla 0 ! 0 - k_chillb 350 ! 350 - k_chillk 0.05 ! 0.05 - fireresist 0.1 ! 0.1 - intc 0.02 ! 0.02 - longevity 100 ! 100 - drought_tolerance 0.3 ! 0.3 - eps_iso 0 ! 0. - seas_iso 1 ! 1 - eps_mon 0 ! 0. - storfrac_mon 0 ! 0. -) - - -pft "Fag_syl" ( - - include 1 ! 1 - tree - shade_tolerant - temperate_tree - broad_leaved - phenology "summergreen" - !sla 24.3 ! 24.3 - gmin 0.5 ! 0.5 - fnstorage 0.15 ! 0.15 - phengdd5ramp 200 ! 200 - tcmin_surv -4 ! -4.0 - tcmin_est -3.5 ! -3.5 - tcmax_est 6 ! 6 - twmin_est 5 ! 5 - gdd5min_est 1500 ! 1500 - k_chilla 0 ! 0 - k_chillb 600 ! 600 - k_chillk 0.05 ! 0.05 - fireresist 0.1 ! 0.1 - intc 0.02 ! 0.02 - longevity 500 ! 500 - drought_tolerance 0.3 ! 0.3 - eps_iso 0 ! 0. - seas_iso 1 ! 1 - eps_mon 10 ! 10. - storfrac_mon 0 ! 0. -) - - -pft "Fra_exc" ( - - include 1 ! 1 - tree - intermediate_shade_tolerant - temperate_tree - broad_leaved - phenology "summergreen" - !sla 24.3 ! 24.3 - gmin 0.5 ! 0.5 - fnstorage 0.15 ! 0.15 - phengdd5ramp 200 ! 200 - tcmin_surv -16 ! -16 - tcmin_est -16 ! -16 - tcmax_est 6 ! 6 - twmin_est 5 ! 5 - gdd5min_est 1100 ! 1100 - k_chilla 0 ! 0 - k_chillb 100 ! 100 - k_chillk 0.05 ! 0.05 - fireresist 0.1 ! 0.1 - intc 0.02 ! 0.02 - longevity 350 ! 350 - drought_tolerance 0.4 ! 0.4 - eps_iso 0 ! 0. - seas_iso 1 ! 1 - eps_mon 0 ! 0. - storfrac_mon 0 ! 0. -) - - -pft "Jun_oxy" ( - - ! Thomas Hickler's values - - include 1 ! 1 - tree ! THdiff: - shrub - shade_intolerant - temperate_tree - needle_leaved - rootdist 0.5 0.5 - phenology "evergreen" - k_latosa 1500 ! 1500 - crownarea_max 10 ! 10 - !sla 10 ! 10 - gmin 0.5 ! 0.5 - fnstorage 0.05 ! 0.05 - leaflong 1.5 ! 1.5 - turnover_leaf 0.6667 ! 0.6667 - phengdd5ramp 0 ! 0 - tcmin_surv 0 ! 0 - tcmin_est 1 ! 1 - tcmax_est 1000 ! 1000 - twmin_est -1000 ! -1000 - gdd5min_est 2200 ! 2200 - k_chilla 0 ! 0 - k_chillb 100 ! 100 - k_chillk 0.05 ! 0.05 - fireresist 0.4 ! 0.4 - intc 0.02 ! 0.02 - longevity 200 ! 200 - drought_tolerance 0.01 ! 0.01 - eps_iso 0 ! 0. - seas_iso 0 ! 0 - eps_mon 2 ! 2.0 - storfrac_mon 0.5 ! 0.5 -) - - -pft "MRS" ( - - ! Thomas Hickler's values - ! Mediterranean raingreen low shrub: - ! Cistus, Rosmarinus, Genista, Lavandula, Erica - - include 1 ! 1 - shrub ! THdiff: - has k_allom1 as 250 - shade_intolerant - temperate_tree - rootdist 0.9 0.1 - phenology "raingreen" - k_latosa 1500 ! 1500 - !sla 10 ! 10 - gmin 0.5 ! 0.5 - leaflong 0.5 ! 0.5 - turnover_leaf 1 ! 1 - phengdd5ramp 0 ! 0 - tcmin_surv 0 ! 0 - tcmin_est 1 ! 1 - tcmax_est 1000 ! 1000 - twmin_est -1000 ! -1000 - gdd5min_est 2200 ! 2200 - k_chilla 0 ! 0 - k_chillb 100 ! 100 - k_chillk 0.05 ! 0.05 - fireresist 0.3 ! 0.3 - intc 0.02 ! 0.02 - longevity 100 ! 100 - drought_tolerance 0.01 ! 0.01 - eps_iso 2 ! 2.0 - seas_iso 0 ! 0 - eps_mon 4 ! 4.0 - storfrac_mon 0.5 ! 0.5 - ga 0.04 ! 0.040 -) - - -pft "Pic_abi" ( - - include 1 ! 1 - tree - shade_tolerant - boreal_tree - needle_leaved - rootdist 0.8 0.2 - phenology "evergreen" - !sla 9.3 ! 9.3 - gmin 0.3 ! 0.3 - fnstorage 0.05 ! 0.05 - leaflong 3 ! 3 - turnover_leaf 0.33 ! 0.33 - phengdd5ramp 0 ! 0 - tcmin_surv -30 ! -30 - tcmin_est -30 ! -30 - tcmax_est -1.5 ! -1.5 - twmin_est 5 ! 5 - gdd5min_est 600 ! 600 - k_chilla 0 ! 0 - k_chillb 100 ! 100 - k_chillk 0.05 ! 0.05 - fireresist 0.1 ! 0.1 - intc 0.06 ! 0.06 - longevity 500 ! 500 - drought_tolerance 0.43 ! 0.43 - eps_iso 0.5 ! 0.5 - seas_iso 0 ! 0 - eps_mon 6 ! 6.0 - storfrac_mon 0.5 ! 0.5 -) - - -pft "Pic_sit" ( - - ! Bjarki's values - - include 1 ! 1 - tree - intermediate_shade_tolerant ! Savill's silviculture book - boreal_tree - needle_leaved - rootdist 0.8 0.2 ! ThomasH - phenology "evergreen" - k_latosa 4500 ! 4500 - !sla 9.3 ! 9.3 - gmin 0.3 ! 0.3 - fnstorage 0.05 ! 0.05 - leaflong 4 ! 4 - turnover_leaf 0.25 ! 0.25 - phengdd5ramp 0 ! 0 - tcmin_surv -18 ! -18 - tcmin_est -17 ! -17 - tcmax_est 5.5 ! 5.5 - twmin_est -1000 ! -1000 - gdd5min_est 450 ! 450 - k_chilla 0 ! 0 - k_chillb 100 ! 100 - k_chillk 0.05 ! 0.05 - fireresist 0.1 ! 0.1 - intc 0.06 ! 0.06 - longevity 700 ! 700 - drought_tolerance 0.5 ! 0.5 - eps_iso 0 ! 0. - seas_iso 0 ! 0 - eps_mon 0 ! 0. - storfrac_mon 0.5 ! 0.5 - - ! wooddens 200 - Should be less dens than P. abies (Savill) - ! turnover_sap 0.065 ! Bjarki 30% + abies! -) - - - -pft "Pin_syl" ( - - include 1 ! 1 - tree - intermediate_shade_tolerant - boreal_tree - needle_leaved - phenology "evergreen" - k_latosa 3000 ! 3000 - !sla 9.3 ! 9.3 - gmin 0.3 ! 0.3 - fnstorage 0.05 ! 0.05 - leaflong 2 ! 2 - turnover_leaf 0.5 ! 0.5 - phengdd5ramp 0 ! 0 - tcmin_surv -30 ! -30 - tcmin_est -30 ! -30 - tcmax_est -1 ! -1.0 - twmin_est 5 ! 5 - gdd5min_est 500 ! 500 - k_chilla 0 ! 0 - k_chillb 100 ! 100 - k_chillk 0.05 ! 0.05 - fireresist 0.2 ! 0.2 - intc 0.06 ! 0.06 - longevity 350 ! 350 - drought_tolerance 0.25 ! 0.25 - eps_iso 0 ! 0. - seas_iso 0 ! 0 - eps_mon 4 ! 4.0 - storfrac_mon 0.5 ! 0.5 -) - - -pft "Pin_hal" ( - - ! Thomas Hickler's values - - include 1 ! 1 - tree - shade_intolerant - temperate_tree - needle_leaved - phenology "evergreen" - k_latosa 3000 ! 3000 - !sla 9.3 ! 9.3 - gmin 0.3 ! 0.3 - fnstorage 0.05 ! 0.05 - leaflong 2 ! 2 - turnover_leaf 0.5 ! 0.5 - phengdd5ramp 0 ! 0 - tcmin_surv 3 ! 3 - tcmin_est 3 ! 3 - tcmax_est 9 ! 9 - twmin_est 21 ! 21 - gdd5min_est 3000 ! 3000 - k_chilla 0 ! 0 - k_chillb 100 ! 100 - k_chillk 0.05 ! 0.05 - fireresist 0.2 ! 0.2 - intc 0.06 ! 0.06 - longevity 350 ! 350 - drought_tolerance 0.05 ! 0.05 - eps_iso 0 ! 0. - seas_iso 0 ! 0 - eps_mon 10 ! 10.0 - storfrac_mon 0.5 ! 0.5 -) - - -pft "Pop_tre" ( - - ! Not included in Thomas Hickler's paper - - include 1 ! 1 - tree - shade_intolerant - temperate_tree - broad_leaved - rootdist 0.7 0.3 - phenology "summergreen" - !sla 24.3 ! 24.3 - gmin 0.5 ! 0.5 - fnstorage 0.15 ! 0.15 - phengdd5ramp 200 ! 200 - tcmin_surv -31 ! -31 - tcmin_est -30 ! -30 - tcmax_est 6 ! 6 - twmin_est -1000 ! -1000 - gdd5min_est 500 ! 500 - k_chilla 0 ! 0 - k_chillb 350 ! 350 - k_chillk 0.05 ! 0.05 - fireresist 0.2 ! 0.2 - intc 0.02 ! 0.02 - longevity 160 ! 160 - drought_tolerance 0.4 ! 0.4 - eps_iso 20 ! 20. - seas_iso 1 ! 1 - eps_mon 4 ! 4.0 - storfrac_mon 0 ! 0. -) - - -pft "Que_coc" ( - - ! Thomas Hickler's values - - include 1 ! 1 - shrub ! THdiff: - has k_allom1 as 250 - intermediate_shade_tolerant - temperate_tree - rootdist 0.5 0.5 - phenology "evergreen" - k_latosa 2500 ! 2500 - !sla 10 ! 10 - gmin 0.5 ! 0.5 - leaflong 1.5 ! 1.5 - turnover_leaf 0.6667 ! 0.6667 - phengdd5ramp 0 ! 0 - tcmin_surv 0 ! 0 - tcmin_est 0 ! 0 - tcmax_est 11 ! 11 - twmin_est 21 ! 21 - gdd5min_est 2200 ! 2200 - k_chilla 0 ! 0 - k_chillb 100 ! 100 - k_chillk 0.05 ! 0.05 - fireresist 0.3 ! 0.3 - intc 0.02 ! 0.02 - longevity 350 ! 350 - drought_tolerance 0.1 ! 0.1 - eps_iso 0.1 ! 0.1 - seas_iso 0 ! 0 - eps_mon 10 ! 10.0 - storfrac_mon 0 ! 0. - ga 0.04 ! 0.040 -) - - -pft "Que_ile" ( - - include 1 ! 1 - tree - intermediate_shade_tolerant - temperate_tree - broad_leaved - rootdist 0.5 0.5 - phenology "evergreen" - k_latosa 3000 ! 3000 - !sla 9.3 ! 9.3 - gmin 0.5 ! 0.5 - fnstorage 0.05 ! 0.05 - leaflong 2 ! 2 - turnover_leaf 0.5 ! 0.5 - phengdd5ramp 0 ! 0 - tcmin_surv 3 ! 3 - tcmin_est 3 ! 3 - tcmax_est 7 ! 7 - twmin_est 5 ! 5 - gdd5min_est 1800 ! 1800 - k_chilla 0 ! 0 - k_chillb 100 ! 100 - k_chillk 0.05 ! 0.05 - fireresist 0.3 ! 0.3 - intc 0.02 ! 0.02 - longevity 350 ! 350 - drought_tolerance 0.1 ! 0.1 - eps_iso 0.05 ! 0.05 - seas_iso 0 ! 0 - eps_mon 16 ! 16.0 - storfrac_mon 0 ! 0. -) - - -pft "Que_pub" ( - - ! Thomas Hickler's values - - include 1 ! 1 - tree - intermediate_shade_tolerant - temperate_tree - broad_leaved - phenology "summergreen" - !sla 24.3 ! 24.3 - gmin 0.5 ! 0.5 - fnstorage 0.15 ! 0.15 - phengdd5ramp 200 ! 200 - tcmin_surv -6 ! -6 - tcmin_est -5 ! -5 - tcmax_est 6 ! 6 - twmin_est -1000 ! -1000 - gdd5min_est 1900 ! 1900 - k_chilla 0 ! 0 - k_chillb 100 ! 100 - k_chillk 0.05 ! 0.05 - fireresist 0.2 ! 0.2 - intc 0.02 ! 0.02 - longevity 500 ! 500 - drought_tolerance 0.2 ! 0.2 - eps_iso 50 ! 50.0 - seas_iso 1 ! 1 - eps_mon 0 ! 0. - storfrac_mon 0 ! 0. -) - - -pft "Que_rob" ( - - include 1 ! 1 - tree - intermediate_shade_tolerant - temperate_tree - broad_leaved - phenology "summergreen" - !sla 24.3 ! 24.3 - gmin 0.5 ! 0.5 - fnstorage 0.15 ! 0.15 - phengdd5ramp 200 ! 200 - tcmin_surv -10 ! -10 - tcmin_est -9 ! -9 - tcmax_est 6 ! 6 - twmin_est 5 ! 5 - gdd5min_est 1100 ! 1100 - k_chilla 0 ! 0 - k_chillb 100 ! 100 - k_chillk 0.05 ! 0.05 - fireresist 0.2 ! 0.2 - intc 0.02 ! 0.02 - longevity 500 ! 500 - drought_tolerance 0.25 ! 0.25 - eps_iso 40 ! 40.0 - seas_iso 1 ! 1 - eps_mon 0 ! 0. - storfrac_mon 0 ! 0. -) - - -pft "Til_cor" ( - - include 1 ! 1 - tree - intermediate_shade_tolerant - temperate_tree - broad_leaved - rootdist 0.8 0.2 - phenology "summergreen" - !sla 24.3 ! 24.3 - gmin 0.5 ! 0.5 - fnstorage 0.15 ! 0.15 - phengdd5ramp 200 ! 200 - tcmin_surv -12 ! -12 - tcmin_est -11 ! -11 - tcmax_est 5 ! 5 - twmin_est 5 ! 5 - gdd5min_est 1100 ! 1100 - k_chilla 0 ! 0 - k_chillb 600 ! 600 - k_chillk 0.05 ! 0.05 - fireresist 0.1 ! 0.1 - intc 0.02 ! 0.02 - longevity 350 ! 350 - drought_tolerance 0.33 ! 0.33 - eps_iso 0 ! 0. - seas_iso 1 ! 1 - eps_mon 0 ! 0. - storfrac_mon 0 ! 0. -) - - -pft "Ulm_gla" ( - - ! Not included in Thomas Hickler's paper - - include 1 ! 1 - tree - intermediate_shade_tolerant - temperate_tree - broad_leaved - phenology "summergreen" - !sla 24.3 ! 24.3 - gmin 0.5 ! 0.5 - fnstorage 0.15 ! 0.15 - phengdd5ramp 200 ! 200 - tcmin_surv -10.5 ! -10.5 - tcmin_est -9.5 ! -9.5 - tcmax_est 6 ! 6 - twmin_est 5 ! 5 - gdd5min_est 850 ! 850 - k_chilla 0 ! 0 - k_chillb 100 ! 100 - k_chillk 0.05 ! 0.05 - fireresist 0.1 ! 0.1 - intc 0.02 ! 0.02 - longevity 350 ! 350 - drought_tolerance 0.4 ! 0.4 - eps_iso 0 ! 0. - seas_iso 1 ! 1 - eps_mon 0 ! 0. - storfrac_mon 0 ! 0. -) - - -pft "C3_gr" ( - - include 1 ! 1 - grass - pathway "c3" - rootdist 0.9 0.1 - phenology "any" - !sla 32.4 ! 32.4 - gmin 0.5 ! 0.5 - leaflong 0.5 ! 0.5 - turnover_leaf 1 ! 1 - turnover_root 0.7 ! 0.7 - phengdd5ramp 100 ! 100 - pstemp_min -5 ! -5 - pstemp_low 10 ! 10 - pstemp_high 30 ! 30 - pstemp_max 45 ! 45 - tcmin_surv -1000 ! -1000 - tcmin_est -1000 ! -1000 - tcmax_est 1000 ! 1000 - twmin_est -1000 ! -1000 - gdd5min_est 0 ! 0 - parff_min 2e+06 ! 2000000 - fireresist 0.5 ! 0.5 - intc 0.01 ! 0.01 - drought_tolerance 0.01 ! 0.01 - eps_iso 0 ! 0. - seas_iso 1 ! 1 - eps_mon 1 ! 1.0 - storfrac_mon 0.5 ! 0.5 -) - - -pft "C4_gr" ( - - include 1 ! 1 - grass - pathway "c4" - rootdist 0.9 0.1 - phenology "any" - gmin 0.5 ! 0.5 - leaflong 0.5 ! 0.5 - turnover_leaf 1 ! 1 - turnover_root 0.7 ! 0.7 - phengdd5ramp 100 ! 100 - pstemp_min 6 ! 6 - pstemp_low 20 ! 20 - pstemp_high 45 ! 45 - pstemp_max 55 ! 55 - tcmin_surv 15.5 ! 15.5 - tcmin_est 15.5 ! 15.5 - tcmax_est 1000 ! 1000 - twmin_est -1000 ! -1000 - gdd5min_est 0 ! 0 - parff_min 1e+06 ! 1000000 - fireresist 0.5 ! 0.5 - intc 0.01 ! 0.01 - drought_tolerance 0.01 ! 0.01 - eps_iso 0 ! 0. - seas_iso 1 ! 1 - eps_mon 1 ! 1.0 - storfrac_mon 0.5 ! 0.5 -) - - -! Reference: Savill's silviculture book: -! The Silviculture of Trees used in British Forestry, Peter S. Savill diff --git a/rLPJGUESS/inst/extdata/outputsForTests/run_npatch/europe_cf.ins b/rLPJGUESS/inst/extdata/outputsForTests/run_npatch/europe_cf.ins deleted file mode 100644 index b2b4f2f..0000000 --- a/rLPJGUESS/inst/extdata/outputsForTests/run_npatch/europe_cf.ins +++ /dev/null @@ -1,50 +0,0 @@ -! -! Instruction file with European species to be used with the -! CF I/O module. -! -! Make sure to start LPJ-GUESS with -input cf when using this -! instruction file. -! - -import "/home/ramiro/Github/TestCode/LPJrunTest/runDirectory/europe.ins" - -coordinates_precision 2 - -!/////////////////////////////////////////////////////////////////////////////////////// -! Forcing Data & gridlists -! - -param "file_gridlist" (str "/home/ramiro/Github/TestCode/LPJrunTest/runDirectory/gridlist.txt") - -param "file_co2" (str "/home/ramiro/Github/TestCode/LPJrunTest/crudata/co2_1765-2500_RCP3.txt") -param "file_cru" (str "/home/ramiro/Github/TestCode/LPJrunTest/crudata/cru_1901_2006.bin") -param "file_cru_misc" (str "/home/ramiro/Github/TestCode/LPJrunTest/crudata/cru_1901_2006misc.bin") - -! N deposition (blank string to use constant pre-industrial level of 2 kgN/ha/year) -! type of N deposition time series: either "historic" (default), "rcp26", "rcp45","rcp60","rcp85" as ndep_timeseries in cfinput.cpp -! will work with "GlobalNitrogenDeposition.bin" no matter the value of ndep_timeseries, it will anyway get the right input file -! won´t work with any other RCP ndep file, no matter the value of ndep_timeseries - -param "file_ndep" (str "/home/ramiro/Github/TestCode/LPJrunTest/crudata/GlobalNitrogenDeposition.bin") - - -param "file_temp" (str "/home/ramiro/Github/TestCode/LPJrunTest/temp.nc") -param "variable_temp" (str "temp") - -param "file_prec" (str "/home/ramiro/Github/TestCode/LPJrunTest/prec.nc") -param "variable_prec" (str "prec") - -param "file_insol" (str "/home/ramiro/Github/TestCode/LPJrunTest/rad.nc") -param "variable_insol" (str "rad") - -! Wet days can only be used with monthly precipitation - param "file_wetdays" (str "") -! param "variable_wetdays" (str "_variable_wetdays_") - -! Min/max temp is required for BVOC, -! if BVOC is switched off these can be set to "" - param "file_min_temp" (str "") -! param "variable_min_temp" (str "_variable_min_temp_") - - param "file_max_temp" (str "") -! param "variable_max_temp" (str "_variable_max_temp_") diff --git a/rLPJGUESS/inst/extdata/outputsForTests/run_npatch/gridlist.txt b/rLPJGUESS/inst/extdata/outputsForTests/run_npatch/gridlist.txt deleted file mode 100644 index c8ed25d..0000000 --- a/rLPJGUESS/inst/extdata/outputsForTests/run_npatch/gridlist.txt +++ /dev/null @@ -1 +0,0 @@ -0 Erfurt diff --git a/rLPJGUESS/inst/extdata/outputsForTests/run_npatch/guess.log b/rLPJGUESS/inst/extdata/outputsForTests/run_npatch/guess.log deleted file mode 100644 index 575587d..0000000 --- a/rLPJGUESS/inst/extdata/outputsForTests/run_npatch/guess.log +++ /dev/null @@ -1,13 +0,0 @@ -[LPJ-GUESS Thu Jun 21 19:05:39 2018] - - - --------------------------------------------------- -LPJ-GUESS cohort mode - European species --------------------------------------------------- - -Commencing simulation for gridcell at (10.453,51.0792) -Description: Erfurt -Using soil code and Nitrogen deposition for (10.0,51.0) - -Finished diff --git a/rLPJGUESS/inst/extdata/outputsForTests/run_npatch/outDirectory/aaet.out b/rLPJGUESS/inst/extdata/outputsForTests/run_npatch/outDirectory/aaet.out deleted file mode 100644 index 54855c4..0000000 --- a/rLPJGUESS/inst/extdata/outputsForTests/run_npatch/outDirectory/aaet.out +++ /dev/null @@ -1,63 +0,0 @@ - Lon Lat Year Abi_alb BES Bet_pen Bet_pub Car_bet Cor_ave Fag_syl Fra_exc Jun_oxy MRS Pic_abi Pic_sit Pin_syl Pin_hal Pop_tre Que_coc Que_ile Que_pub Que_rob Til_cor Ulm_gla C3_gr C4_gr Total - 10.45 51.08 1951 0.00 0.67 19.06 58.01 20.07 5.03 94.92 24.33 0.00 0.00 0.91 1.49 1.70 0.00 11.93 0.00 0.00 6.80 25.99 14.75 16.52 0.00 0.00 302.18 - 10.45 51.08 1952 0.00 0.37 16.81 54.91 18.60 4.28 94.23 22.50 0.00 0.00 0.82 1.08 1.35 0.00 10.03 0.00 0.00 6.76 23.29 12.26 15.21 0.00 0.00 282.49 - 10.45 51.08 1953 0.00 0.27 17.03 63.89 21.19 4.32 102.01 25.59 0.00 0.00 0.90 1.05 1.42 0.00 10.63 0.00 0.00 7.46 25.85 14.38 17.42 0.00 0.00 313.42 - 10.45 51.08 1954 0.00 0.19 13.89 53.49 18.23 3.54 86.15 21.27 0.00 0.00 0.77 0.75 1.16 0.00 9.37 0.00 0.00 6.46 22.17 12.20 15.31 0.00 0.00 264.94 - 10.45 51.08 1955 0.00 0.14 13.55 55.20 18.36 2.98 82.92 21.71 0.00 0.00 0.76 0.64 1.11 0.00 9.04 0.00 0.00 6.23 22.27 12.14 15.88 0.00 0.00 262.92 - 10.45 51.08 1956 0.00 0.07 12.45 56.65 18.35 2.60 78.97 21.38 0.00 0.00 0.73 0.43 1.03 0.00 8.35 0.00 0.00 6.16 22.16 11.93 15.89 0.00 0.00 257.14 - 10.45 51.08 1957 0.00 0.00 13.59 68.81 20.96 2.62 92.03 24.78 0.00 0.00 0.80 0.27 1.09 0.00 9.09 0.00 0.00 7.27 25.69 13.72 17.91 0.00 0.00 298.62 - 10.45 51.08 1958 0.00 0.00 12.73 68.44 20.85 2.25 84.97 23.97 0.00 0.00 0.75 0.09 0.99 0.00 7.87 0.00 0.00 6.10 24.44 13.30 17.58 0.00 0.00 284.32 - 10.45 51.08 1959 0.00 0.00 9.80 66.68 19.21 1.70 88.53 22.03 0.00 0.00 0.73 0.06 0.69 0.00 5.55 0.00 0.00 7.23 24.24 10.82 15.36 0.00 0.00 272.61 - 10.45 51.08 1960 0.00 0.00 8.75 71.26 19.61 1.44 72.90 22.25 0.00 0.00 0.49 0.05 0.57 0.00 5.18 0.00 0.00 6.23 23.93 11.79 16.47 0.00 0.00 260.93 - 10.45 51.08 1961 0.00 0.00 8.61 75.01 20.18 1.37 77.00 22.95 0.00 0.00 0.54 0.02 0.47 0.00 5.14 0.00 0.00 5.50 23.74 11.85 16.68 16.12 0.00 285.16 - 10.45 51.08 1962 0.00 0.00 6.81 64.77 16.15 0.85 73.51 19.12 0.00 0.00 0.55 0.02 0.26 0.00 3.36 0.00 0.00 5.32 20.72 9.17 13.87 2.55 0.00 237.04 - 10.45 51.08 1963 0.00 0.00 7.10 74.02 17.33 0.66 78.41 21.33 0.00 0.00 0.61 0.02 0.01 0.00 3.57 0.00 0.00 5.67 22.77 10.38 14.83 1.50 0.00 258.21 - 10.45 51.08 1964 0.00 0.00 6.34 78.09 16.88 0.47 86.09 21.25 0.00 0.00 0.70 0.02 0.01 0.00 2.60 0.00 0.00 6.28 23.41 9.96 15.17 0.68 0.00 267.93 - 10.45 51.08 1965 0.00 0.00 5.79 77.13 16.49 0.42 75.02 20.94 0.00 0.00 0.60 0.02 0.01 0.00 2.38 0.00 0.00 5.33 22.17 9.46 15.29 0.32 0.00 251.37 - 10.45 51.08 1966 0.00 0.00 6.00 82.70 17.91 0.29 83.41 23.25 0.00 0.00 0.68 0.02 0.01 0.00 2.56 0.00 0.00 5.94 23.76 10.13 16.97 0.18 0.00 273.81 - 10.45 51.08 1967 0.00 0.00 5.60 87.72 18.65 0.21 51.07 23.31 0.00 0.00 0.12 0.00 0.00 0.00 2.62 0.00 0.00 6.19 22.34 9.96 17.86 0.00 0.00 245.63 - 10.45 51.08 1968 0.00 0.00 5.02 83.81 16.59 0.12 48.55 21.72 0.00 0.00 0.12 0.00 0.00 0.00 1.86 0.00 0.00 5.92 20.89 8.85 15.39 0.00 0.00 228.86 - 10.45 51.08 1969 0.00 0.00 4.87 82.66 16.13 0.10 48.87 21.68 0.00 0.00 0.13 0.00 0.00 0.00 1.35 0.00 0.00 6.03 20.79 8.28 15.32 0.00 0.00 226.20 - 10.45 51.08 1970 0.00 0.25 4.80 84.26 16.61 1.01 47.19 21.26 0.00 0.00 0.32 0.30 0.41 0.00 2.42 0.00 0.00 5.73 20.59 8.89 15.29 48.31 0.00 277.62 - 10.45 51.08 1971 0.00 0.34 4.34 86.98 17.15 1.79 51.69 21.43 0.00 0.00 0.46 0.46 0.65 0.00 3.11 0.00 0.00 6.38 21.41 8.33 15.21 40.97 0.00 280.70 - 10.45 51.08 1972 0.00 0.46 4.40 90.22 17.63 2.59 48.23 21.10 0.00 0.00 0.59 0.65 0.88 0.00 4.50 0.00 0.00 5.59 20.83 9.30 15.67 32.10 0.00 274.75 - 10.45 51.08 1973 0.00 0.58 5.25 88.22 17.44 3.77 50.03 20.20 0.00 0.00 0.78 0.91 1.26 0.00 6.20 0.00 0.00 5.89 20.21 8.54 15.19 14.16 0.00 258.62 - 10.45 51.08 1974 0.00 0.64 6.05 100.43 19.61 4.70 52.27 22.24 0.00 0.00 0.93 1.10 1.47 0.00 8.03 0.00 0.00 5.72 21.92 9.90 17.46 0.00 0.00 272.46 - 10.45 51.08 1975 0.00 0.62 6.51 105.82 19.40 5.33 54.39 23.45 0.00 0.00 1.02 1.17 1.64 0.00 9.08 0.00 0.00 6.03 23.08 10.32 18.62 0.00 0.00 286.47 - 10.45 51.08 1976 0.00 0.53 6.05 47.07 15.08 5.16 47.45 16.65 0.00 0.00 0.98 1.04 1.55 0.00 8.64 0.00 0.00 6.35 17.89 8.44 12.61 0.00 0.00 195.47 - 10.45 51.08 1977 0.00 0.52 6.21 50.86 15.29 5.06 43.00 16.76 0.00 0.00 0.94 1.03 1.45 0.00 8.79 0.00 0.00 5.22 17.32 9.00 12.67 0.00 0.00 194.14 - 10.45 51.08 1978 0.00 0.46 6.71 53.21 15.86 5.23 43.72 17.57 0.00 0.00 0.95 1.00 1.47 0.00 9.16 0.00 0.00 5.28 17.00 9.09 13.43 0.00 0.00 200.12 - 10.45 51.08 1979 0.00 0.70 8.10 56.22 17.44 5.94 43.97 17.35 0.00 0.00 1.10 1.20 1.93 0.00 10.15 0.00 0.00 5.23 17.99 10.02 14.13 47.56 0.00 259.05 - 10.45 51.08 1980 0.00 0.70 8.33 57.93 17.38 5.87 44.02 16.52 0.00 0.00 1.10 1.19 2.05 0.00 9.88 0.00 0.00 5.17 17.94 9.60 14.13 41.01 0.00 252.82 - 10.45 51.08 1981 0.00 0.79 10.86 63.42 20.44 7.14 46.17 19.23 0.00 0.00 1.35 1.48 2.56 0.00 12.59 0.00 0.00 5.67 20.70 12.27 16.87 35.18 0.00 276.73 - 10.45 51.08 1982 0.00 0.73 11.17 58.73 20.54 7.24 48.13 18.48 0.00 0.00 1.34 1.41 2.79 0.00 12.51 0.00 0.00 6.37 20.59 12.22 16.68 7.03 0.00 245.99 - 10.45 51.08 1983 0.00 0.81 13.68 67.68 23.97 8.41 49.66 21.54 0.00 0.00 1.56 1.56 3.23 0.00 15.09 0.00 0.00 6.43 23.89 15.16 20.05 0.00 0.00 272.71 - 10.45 51.08 1984 0.00 0.64 11.34 58.67 20.05 6.81 39.80 17.50 0.00 0.00 1.34 1.22 2.71 0.00 13.22 0.00 0.00 5.01 19.98 12.90 17.17 7.54 0.00 235.89 - 10.45 51.08 1985 0.00 0.73 14.11 73.99 24.46 7.83 49.39 21.11 0.00 0.00 1.53 1.29 3.10 0.00 15.50 0.00 0.00 6.12 24.02 15.29 21.09 3.41 0.00 282.97 - 10.45 51.08 1986 0.00 0.58 14.59 77.06 25.64 7.32 49.16 21.77 0.00 0.00 1.50 1.09 2.97 0.00 15.60 0.00 0.00 6.07 24.91 15.49 21.96 2.21 0.00 287.92 - 10.45 51.08 1987 0.00 0.49 13.64 73.58 24.26 6.39 45.52 20.09 0.00 0.00 1.38 0.82 2.61 0.00 14.13 0.00 0.00 5.57 22.76 14.55 20.73 0.79 0.00 267.31 - 10.45 51.08 1988 0.00 0.31 13.10 80.23 25.40 6.06 50.81 21.15 0.00 0.00 1.35 0.70 2.45 0.00 13.68 0.00 0.00 5.39 19.83 13.71 21.76 0.44 0.00 276.36 - 10.45 51.08 1989 0.00 0.20 11.51 35.05 21.36 5.02 46.31 14.42 0.00 0.00 1.32 0.56 2.05 0.00 11.33 0.00 0.00 6.03 19.56 11.60 16.22 0.26 0.00 202.80 - 10.45 51.08 1990 0.00 0.14 12.47 41.19 23.45 5.28 48.03 16.34 0.00 0.00 1.38 0.51 2.20 0.00 11.85 0.00 0.00 6.21 20.71 12.41 18.47 0.17 0.00 220.81 - 10.45 51.08 1991 0.00 0.08 10.78 36.26 20.54 3.93 44.76 14.60 0.00 0.00 1.09 0.40 1.67 0.00 9.93 0.00 0.00 6.24 18.94 10.84 15.67 50.35 0.00 246.07 - 10.45 51.08 1992 0.00 0.08 11.78 45.68 23.91 4.03 47.45 17.65 0.00 0.00 1.18 0.33 1.77 0.00 11.71 0.00 0.00 6.35 20.44 12.30 18.92 46.40 0.00 269.98 - 10.45 51.08 1993 0.00 0.04 12.25 53.59 26.79 3.90 50.09 20.39 0.00 0.00 1.25 0.27 1.84 0.00 11.24 0.00 0.00 6.38 22.91 13.38 21.17 38.63 0.00 284.12 - 10.45 51.08 1994 0.00 0.06 13.02 63.45 30.25 3.99 55.99 23.56 0.00 0.00 1.34 0.21 1.77 0.00 12.38 0.00 0.00 6.99 26.69 15.66 24.07 26.49 0.00 305.92 - 10.45 51.08 1995 0.00 0.07 12.79 65.16 29.93 3.78 55.26 24.07 0.00 0.00 1.29 0.21 1.54 0.00 12.31 0.00 0.00 6.73 26.59 15.13 24.59 2.31 0.00 281.74 - 10.45 51.08 1996 0.00 0.06 10.40 57.41 25.74 2.96 48.08 20.46 0.00 0.00 1.08 0.16 1.07 0.00 10.45 0.00 0.00 5.69 22.92 12.71 21.28 0.00 0.00 240.49 - 10.45 51.08 1997 0.00 0.08 11.34 70.86 30.69 3.22 59.18 24.70 0.00 0.00 1.19 0.17 1.12 0.00 11.56 0.00 0.00 6.97 27.63 14.43 25.70 0.00 0.00 288.85 - 10.45 51.08 1998 0.00 0.07 10.11 68.48 27.12 2.54 56.94 22.56 0.00 0.00 1.07 0.16 0.91 0.00 9.81 0.00 0.00 6.73 25.22 13.13 23.77 0.00 0.00 268.62 - 10.45 51.08 1999 0.00 0.08 12.14 84.02 32.35 2.48 63.21 27.22 0.00 0.00 1.18 0.16 0.85 0.00 10.02 0.00 0.00 7.28 29.60 15.57 28.75 0.00 0.00 314.90 - 10.45 51.08 2000 0.00 0.02 10.47 80.19 28.37 1.83 61.04 25.28 0.00 0.00 1.18 0.15 0.35 0.00 7.82 0.00 0.00 7.09 27.03 12.96 26.41 0.00 0.00 290.16 - 10.45 51.08 2001 0.00 0.02 10.00 82.88 28.45 1.61 60.85 24.93 0.00 0.00 1.20 0.14 0.30 0.00 7.01 0.00 0.00 6.96 26.53 12.83 26.37 0.00 0.00 290.08 - 10.45 51.08 2002 0.00 0.02 9.17 83.99 27.77 1.16 59.17 24.86 0.00 0.00 1.16 0.12 0.25 0.00 6.37 0.00 0.00 6.61 25.47 12.21 25.96 0.00 0.00 284.28 - 10.45 51.08 2003 0.00 0.02 7.67 88.36 28.37 0.99 66.76 25.17 0.00 0.00 1.39 0.13 0.28 0.00 6.13 0.00 0.00 7.64 25.93 11.41 26.89 0.00 0.00 297.14 - 10.45 51.08 2004 0.00 0.02 6.70 87.20 26.22 0.95 64.72 22.90 0.00 0.00 1.35 0.13 0.26 0.00 5.31 0.00 0.00 7.16 24.13 9.98 25.22 0.00 0.00 282.25 - 10.45 51.08 2005 0.00 0.02 6.44 95.52 27.82 0.93 66.81 24.50 0.00 0.00 1.43 0.12 0.25 0.00 4.45 0.00 0.00 6.30 25.38 9.73 27.01 0.00 0.00 296.71 - 10.45 51.08 2006 0.00 0.02 5.98 104.01 29.04 0.97 70.31 24.78 0.00 0.00 1.52 0.12 0.25 0.00 4.22 0.00 0.00 5.40 26.27 10.26 27.68 0.00 0.00 310.83 - 10.45 51.08 2007 0.00 0.02 4.76 106.33 28.41 0.87 67.62 25.04 0.00 0.00 1.49 0.10 0.23 0.00 2.97 0.00 0.00 5.17 25.74 9.24 28.23 0.00 0.00 306.22 - 10.45 51.08 2008 0.00 0.02 4.09 100.14 26.52 0.81 66.70 22.98 0.00 0.00 1.54 0.09 0.21 0.00 2.58 0.00 0.00 5.02 23.11 7.47 25.03 0.00 0.00 286.31 - 10.45 51.08 2009 0.00 0.02 3.20 104.08 25.39 0.61 64.77 22.35 0.00 0.00 1.55 0.08 0.19 0.00 1.90 0.00 0.00 4.79 22.11 7.18 24.08 0.00 0.00 282.32 - 10.45 51.08 2010 0.00 0.01 2.85 104.54 24.29 0.56 63.99 21.97 0.00 0.00 1.56 0.06 0.18 0.00 1.77 0.00 0.00 4.68 21.72 6.20 23.24 0.00 0.00 277.62 - 10.45 51.08 2011 0.00 0.01 2.74 115.74 24.17 0.28 70.25 22.70 0.00 0.00 1.72 0.06 0.18 0.00 1.55 0.00 0.00 4.99 22.62 5.94 24.81 0.00 0.00 297.77 - 10.45 51.08 2012 0.00 0.01 2.46 108.26 21.83 0.26 66.49 21.04 0.00 0.00 1.73 0.05 0.16 0.00 1.16 0.00 0.00 4.85 20.61 5.30 22.98 0.00 0.00 277.20 diff --git a/rLPJGUESS/inst/extdata/outputsForTests/run_npatch/outDirectory/agpp.out b/rLPJGUESS/inst/extdata/outputsForTests/run_npatch/outDirectory/agpp.out deleted file mode 100644 index c032a2f..0000000 --- a/rLPJGUESS/inst/extdata/outputsForTests/run_npatch/outDirectory/agpp.out +++ /dev/null @@ -1,63 +0,0 @@ - Lon Lat Year Abi_alb BES Bet_pen Bet_pub Car_bet Cor_ave Fag_syl Fra_exc Jun_oxy MRS Pic_abi Pic_sit Pin_syl Pin_hal Pop_tre Que_coc Que_ile Que_pub Que_rob Til_cor Ulm_gla C3_gr C4_gr Total - 10.45 51.08 1951 0.000 0.002 0.043 0.257 0.046 0.009 0.476 0.057 0.000 0.000 0.002 0.004 0.004 0.000 0.029 0.000 0.000 0.011 0.057 0.034 0.041 0.000 0.000 1.072 - 10.45 51.08 1952 0.000 0.001 0.038 0.244 0.042 0.007 0.476 0.052 0.000 0.000 0.002 0.002 0.003 0.000 0.024 0.000 0.000 0.010 0.050 0.029 0.038 0.000 0.000 1.018 - 10.45 51.08 1953 0.000 0.000 0.035 0.271 0.045 0.007 0.515 0.056 0.000 0.000 0.002 0.002 0.003 0.000 0.024 0.000 0.000 0.012 0.053 0.030 0.041 0.000 0.000 1.096 - 10.45 51.08 1954 0.000 0.000 0.031 0.237 0.041 0.005 0.460 0.050 0.000 0.000 0.002 0.001 0.003 0.000 0.022 0.000 0.000 0.011 0.049 0.027 0.038 0.000 0.000 0.978 - 10.45 51.08 1955 0.000 0.000 0.029 0.247 0.041 0.004 0.445 0.050 0.000 0.000 0.002 0.001 0.002 0.000 0.020 0.000 0.000 0.010 0.048 0.026 0.038 0.000 0.000 0.965 - 10.45 51.08 1956 0.000 0.000 0.027 0.255 0.041 0.004 0.444 0.051 0.000 0.000 0.002 0.001 0.002 0.000 0.019 0.000 0.000 0.011 0.049 0.026 0.039 0.000 0.000 0.970 - 10.45 51.08 1957 0.000 0.000 0.027 0.294 0.043 0.003 0.478 0.053 0.000 0.000 0.001 0.000 0.002 0.000 0.019 0.000 0.000 0.011 0.050 0.027 0.040 0.000 0.000 1.049 - 10.45 51.08 1958 0.000 0.000 0.025 0.285 0.043 0.003 0.474 0.051 0.000 0.000 0.001 0.000 0.001 0.000 0.015 0.000 0.000 0.009 0.048 0.025 0.039 0.000 0.000 1.020 - 10.45 51.08 1959 0.000 0.000 0.018 0.274 0.037 0.002 0.475 0.045 0.000 0.000 0.001 0.000 0.001 0.000 0.010 0.000 0.000 0.011 0.046 0.020 0.032 0.000 0.000 0.973 - 10.45 51.08 1960 0.000 0.000 0.017 0.306 0.040 0.002 0.433 0.048 0.000 0.000 0.001 0.000 0.001 0.000 0.010 0.000 0.000 0.010 0.049 0.022 0.037 0.000 0.000 0.977 - 10.45 51.08 1961 0.000 0.000 0.016 0.327 0.041 0.002 0.458 0.050 0.000 0.000 0.001 0.000 0.001 0.000 0.010 0.000 0.000 0.009 0.049 0.022 0.037 0.007 0.000 1.029 - 10.45 51.08 1962 0.000 0.000 0.012 0.287 0.032 0.001 0.432 0.039 0.000 0.000 0.001 0.000 0.000 0.000 0.006 0.000 0.000 0.009 0.041 0.016 0.029 0.001 0.000 0.906 - 10.45 51.08 1963 0.000 0.000 0.013 0.319 0.034 0.001 0.456 0.044 0.000 0.000 0.001 0.000 0.000 0.000 0.006 0.000 0.000 0.009 0.044 0.018 0.032 0.001 0.000 0.979 - 10.45 51.08 1964 0.000 0.000 0.010 0.312 0.030 0.000 0.485 0.041 0.000 0.000 0.001 0.000 0.000 0.000 0.004 0.000 0.000 0.009 0.041 0.016 0.030 0.000 0.000 0.982 - 10.45 51.08 1965 0.000 0.000 0.010 0.334 0.032 0.000 0.449 0.043 0.000 0.000 0.001 0.000 0.000 0.000 0.004 0.000 0.000 0.009 0.043 0.016 0.032 0.000 0.000 0.974 - 10.45 51.08 1966 0.000 0.000 0.010 0.345 0.034 0.000 0.504 0.047 0.000 0.000 0.001 0.000 0.000 0.000 0.004 0.000 0.000 0.010 0.046 0.016 0.035 0.000 0.000 1.053 - 10.45 51.08 1967 0.000 0.000 0.008 0.352 0.033 0.000 0.491 0.044 0.000 0.000 0.002 0.000 0.000 0.000 0.004 0.000 0.000 0.010 0.043 0.014 0.034 0.000 0.000 1.033 - 10.45 51.08 1968 0.000 0.000 0.008 0.351 0.030 0.000 0.318 0.042 0.000 0.000 0.000 0.000 0.000 0.000 0.003 0.000 0.000 0.010 0.038 0.013 0.030 0.000 0.000 0.841 - 10.45 51.08 1969 0.000 0.000 0.007 0.339 0.029 0.000 0.317 0.041 0.000 0.000 0.000 0.000 0.000 0.000 0.002 0.000 0.000 0.009 0.037 0.012 0.029 0.000 0.000 0.823 - 10.45 51.08 1970 0.000 0.002 0.011 0.351 0.033 0.005 0.310 0.042 0.000 0.000 0.002 0.003 0.003 0.000 0.010 0.000 0.000 0.009 0.040 0.016 0.032 0.093 0.000 0.961 - 10.45 51.08 1971 0.000 0.003 0.012 0.346 0.035 0.008 0.334 0.041 0.000 0.000 0.003 0.004 0.004 0.000 0.014 0.000 0.000 0.009 0.041 0.017 0.032 0.052 0.000 0.956 - 10.45 51.08 1972 0.000 0.004 0.014 0.393 0.040 0.011 0.317 0.044 0.000 0.000 0.004 0.005 0.006 0.000 0.020 0.000 0.000 0.009 0.044 0.021 0.037 0.023 0.000 0.993 - 10.45 51.08 1973 0.000 0.003 0.016 0.355 0.039 0.012 0.319 0.041 0.000 0.000 0.004 0.005 0.006 0.000 0.024 0.000 0.000 0.009 0.042 0.021 0.034 0.004 0.000 0.934 - 10.45 51.08 1974 0.000 0.003 0.019 0.427 0.046 0.014 0.339 0.048 0.000 0.000 0.004 0.005 0.006 0.000 0.028 0.000 0.000 0.009 0.048 0.024 0.041 0.000 0.000 1.061 - 10.45 51.08 1975 0.000 0.002 0.018 0.408 0.042 0.013 0.329 0.046 0.000 0.000 0.004 0.005 0.006 0.000 0.027 0.000 0.000 0.009 0.047 0.023 0.040 0.000 0.000 1.018 - 10.45 51.08 1976 0.000 0.002 0.017 0.351 0.036 0.011 0.337 0.037 0.000 0.000 0.003 0.004 0.005 0.000 0.024 0.000 0.000 0.008 0.040 0.019 0.032 0.000 0.000 0.927 - 10.45 51.08 1977 0.000 0.002 0.019 0.238 0.039 0.012 0.316 0.039 0.000 0.000 0.003 0.004 0.005 0.000 0.027 0.000 0.000 0.008 0.042 0.022 0.033 0.000 0.000 0.808 - 10.45 51.08 1978 0.000 0.001 0.018 0.237 0.038 0.011 0.309 0.039 0.000 0.000 0.003 0.003 0.005 0.000 0.026 0.000 0.000 0.008 0.039 0.021 0.033 0.000 0.000 0.792 - 10.45 51.08 1979 0.000 0.004 0.025 0.241 0.045 0.014 0.302 0.041 0.000 0.000 0.004 0.005 0.008 0.000 0.031 0.000 0.000 0.008 0.043 0.026 0.036 0.091 0.000 0.924 - 10.45 51.08 1980 0.000 0.005 0.028 0.251 0.047 0.014 0.303 0.040 0.000 0.000 0.005 0.006 0.009 0.000 0.031 0.000 0.000 0.008 0.043 0.027 0.038 0.058 0.000 0.913 - 10.45 51.08 1981 0.000 0.004 0.037 0.275 0.058 0.018 0.330 0.049 0.000 0.000 0.005 0.006 0.010 0.000 0.040 0.000 0.000 0.010 0.053 0.036 0.047 0.019 0.000 0.995 - 10.45 51.08 1982 0.000 0.004 0.034 0.227 0.053 0.016 0.324 0.043 0.000 0.000 0.006 0.006 0.011 0.000 0.036 0.000 0.000 0.009 0.046 0.033 0.042 0.003 0.000 0.892 - 10.45 51.08 1983 0.000 0.003 0.041 0.281 0.064 0.018 0.353 0.052 0.000 0.000 0.005 0.005 0.010 0.000 0.043 0.000 0.000 0.009 0.056 0.041 0.052 0.000 0.000 1.033 - 10.45 51.08 1984 0.000 0.003 0.035 0.253 0.058 0.015 0.302 0.046 0.000 0.000 0.005 0.004 0.009 0.000 0.039 0.000 0.000 0.009 0.052 0.036 0.048 0.004 0.000 0.917 - 10.45 51.08 1985 0.000 0.002 0.039 0.290 0.063 0.015 0.352 0.051 0.000 0.000 0.005 0.004 0.008 0.000 0.041 0.000 0.000 0.009 0.056 0.039 0.053 0.002 0.000 1.030 - 10.45 51.08 1986 0.000 0.002 0.039 0.306 0.066 0.013 0.348 0.052 0.000 0.000 0.004 0.003 0.008 0.000 0.040 0.000 0.000 0.009 0.058 0.038 0.055 0.001 0.000 1.043 - 10.45 51.08 1987 0.000 0.001 0.037 0.320 0.064 0.011 0.337 0.050 0.000 0.000 0.004 0.002 0.007 0.000 0.036 0.000 0.000 0.009 0.056 0.036 0.054 0.000 0.000 1.026 - 10.45 51.08 1988 0.000 0.001 0.032 0.306 0.060 0.009 0.366 0.047 0.000 0.000 0.004 0.002 0.006 0.000 0.032 0.000 0.000 0.008 0.053 0.031 0.051 0.000 0.000 1.007 - 10.45 51.08 1989 0.000 0.001 0.029 0.153 0.056 0.008 0.386 0.040 0.000 0.000 0.004 0.002 0.005 0.000 0.027 0.000 0.000 0.009 0.046 0.028 0.045 0.000 0.000 0.838 - 10.45 51.08 1990 0.000 0.000 0.031 0.189 0.061 0.008 0.407 0.047 0.000 0.000 0.004 0.001 0.005 0.000 0.028 0.000 0.000 0.010 0.052 0.030 0.053 0.000 0.000 0.928 - 10.45 51.08 1991 0.000 0.000 0.026 0.172 0.052 0.006 0.376 0.041 0.000 0.000 0.004 0.001 0.004 0.000 0.022 0.000 0.000 0.009 0.044 0.025 0.044 0.085 0.000 0.911 - 10.45 51.08 1992 0.000 0.000 0.027 0.199 0.060 0.006 0.373 0.049 0.000 0.000 0.004 0.001 0.005 0.000 0.026 0.000 0.000 0.009 0.050 0.028 0.053 0.064 0.000 0.954 - 10.45 51.08 1993 0.000 0.000 0.030 0.247 0.071 0.007 0.409 0.061 0.000 0.000 0.004 0.001 0.004 0.000 0.027 0.000 0.000 0.011 0.060 0.033 0.064 0.035 0.000 1.062 - 10.45 51.08 1994 0.000 0.000 0.029 0.281 0.074 0.006 0.417 0.065 0.000 0.000 0.004 0.001 0.004 0.000 0.027 0.000 0.000 0.011 0.064 0.035 0.067 0.013 0.000 1.098 - 10.45 51.08 1995 0.000 0.000 0.027 0.290 0.072 0.005 0.399 0.065 0.000 0.000 0.004 0.001 0.003 0.000 0.025 0.000 0.000 0.010 0.062 0.032 0.067 0.001 0.000 1.063 - 10.45 51.08 1996 0.000 0.000 0.023 0.280 0.066 0.004 0.371 0.060 0.000 0.000 0.003 0.001 0.002 0.000 0.022 0.000 0.000 0.010 0.056 0.028 0.062 0.000 0.000 0.990 - 10.45 51.08 1997 0.000 0.000 0.022 0.318 0.070 0.004 0.418 0.066 0.000 0.000 0.004 0.001 0.002 0.000 0.022 0.000 0.000 0.011 0.061 0.029 0.068 0.000 0.000 1.095 - 10.45 51.08 1998 0.000 0.000 0.020 0.323 0.065 0.004 0.427 0.063 0.000 0.000 0.003 0.000 0.002 0.000 0.019 0.000 0.000 0.011 0.057 0.027 0.067 0.000 0.000 1.088 - 10.45 51.08 1999 0.000 0.000 0.022 0.368 0.072 0.003 0.452 0.071 0.000 0.000 0.003 0.000 0.002 0.000 0.017 0.000 0.000 0.011 0.062 0.029 0.075 0.000 0.000 1.190 - 10.45 51.08 2000 0.000 0.000 0.018 0.360 0.063 0.002 0.440 0.067 0.000 0.000 0.004 0.000 0.001 0.000 0.013 0.000 0.000 0.011 0.055 0.024 0.070 0.000 0.000 1.129 - 10.45 51.08 2001 0.000 0.000 0.017 0.371 0.062 0.002 0.439 0.066 0.000 0.000 0.003 0.000 0.001 0.000 0.011 0.000 0.000 0.011 0.054 0.023 0.069 0.000 0.000 1.131 - 10.45 51.08 2002 0.000 0.000 0.015 0.385 0.060 0.001 0.423 0.064 0.000 0.000 0.003 0.000 0.001 0.000 0.010 0.000 0.000 0.010 0.051 0.021 0.067 0.000 0.000 1.111 - 10.45 51.08 2003 0.000 0.000 0.012 0.360 0.055 0.001 0.445 0.060 0.000 0.000 0.004 0.000 0.001 0.000 0.009 0.000 0.000 0.010 0.046 0.019 0.064 0.000 0.000 1.086 - 10.45 51.08 2004 0.000 0.000 0.011 0.400 0.057 0.001 0.478 0.062 0.000 0.000 0.004 0.000 0.000 0.000 0.008 0.000 0.000 0.011 0.047 0.018 0.067 0.000 0.000 1.165 - 10.45 51.08 2005 0.000 0.000 0.010 0.423 0.057 0.001 0.476 0.062 0.000 0.000 0.004 0.000 0.000 0.000 0.006 0.000 0.000 0.009 0.046 0.017 0.067 0.000 0.000 1.178 - 10.45 51.08 2006 0.000 0.000 0.008 0.435 0.057 0.001 0.477 0.064 0.000 0.000 0.004 0.000 0.000 0.000 0.005 0.000 0.000 0.007 0.045 0.015 0.068 0.000 0.000 1.188 - 10.45 51.08 2007 0.000 0.000 0.007 0.467 0.057 0.001 0.485 0.067 0.000 0.000 0.005 0.000 0.000 0.000 0.004 0.000 0.000 0.008 0.047 0.015 0.073 0.000 0.000 1.236 - 10.45 51.08 2008 0.000 0.000 0.006 0.431 0.051 0.001 0.470 0.059 0.000 0.000 0.004 0.000 0.000 0.000 0.003 0.000 0.000 0.007 0.039 0.012 0.062 0.000 0.000 1.146 - 10.45 51.08 2009 0.000 0.000 0.004 0.452 0.049 0.001 0.475 0.059 0.000 0.000 0.004 0.000 0.000 0.000 0.002 0.000 0.000 0.007 0.037 0.012 0.061 0.000 0.000 1.163 - 10.45 51.08 2010 0.000 0.000 0.004 0.459 0.045 0.001 0.444 0.056 0.000 0.000 0.004 0.000 0.000 0.000 0.002 0.000 0.000 0.006 0.035 0.010 0.058 0.000 0.000 1.124 - 10.45 51.08 2011 0.000 0.000 0.003 0.497 0.046 0.000 0.514 0.059 0.000 0.000 0.005 0.000 0.000 0.000 0.002 0.000 0.000 0.007 0.037 0.010 0.062 0.000 0.000 1.242 - 10.45 51.08 2012 0.000 0.000 0.003 0.466 0.039 0.000 0.482 0.054 0.000 0.000 0.005 0.000 0.000 0.000 0.001 0.000 0.000 0.007 0.031 0.009 0.057 0.000 0.000 1.153 diff --git a/rLPJGUESS/inst/extdata/outputsForTests/run_npatch/outDirectory/aiso.out b/rLPJGUESS/inst/extdata/outputsForTests/run_npatch/outDirectory/aiso.out deleted file mode 100644 index 7d6e828..0000000 --- a/rLPJGUESS/inst/extdata/outputsForTests/run_npatch/outDirectory/aiso.out +++ /dev/null @@ -1,63 +0,0 @@ - Lon Lat Year Abi_alb BES Bet_pen Bet_pub Car_bet Cor_ave Fag_syl Fra_exc Jun_oxy MRS Pic_abi Pic_sit Pin_syl Pin_hal Pop_tre Que_coc Que_ile Que_pub Que_rob Til_cor Ulm_gla C3_gr C4_gr Total - 10.45 51.08 1951 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1952 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1953 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1954 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1955 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1956 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1957 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1958 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1959 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1960 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1961 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1962 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1963 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1964 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1965 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1966 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1967 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1968 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1969 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1970 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1971 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1972 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1973 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1974 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1975 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1976 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1977 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1978 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1979 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1980 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1981 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1982 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1983 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1984 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1985 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1986 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1987 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1988 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1989 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1990 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1991 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1992 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1993 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1994 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1995 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1996 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1997 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1998 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1999 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 2000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 2001 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 2002 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 2003 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 2004 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 2005 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 2006 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 2007 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 2008 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 2009 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 2010 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 2011 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 2012 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 diff --git a/rLPJGUESS/inst/extdata/outputsForTests/run_npatch/outDirectory/amon.out b/rLPJGUESS/inst/extdata/outputsForTests/run_npatch/outDirectory/amon.out deleted file mode 100644 index 7d6e828..0000000 --- a/rLPJGUESS/inst/extdata/outputsForTests/run_npatch/outDirectory/amon.out +++ /dev/null @@ -1,63 +0,0 @@ - Lon Lat Year Abi_alb BES Bet_pen Bet_pub Car_bet Cor_ave Fag_syl Fra_exc Jun_oxy MRS Pic_abi Pic_sit Pin_syl Pin_hal Pop_tre Que_coc Que_ile Que_pub Que_rob Til_cor Ulm_gla C3_gr C4_gr Total - 10.45 51.08 1951 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1952 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1953 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1954 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1955 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1956 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1957 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1958 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1959 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1960 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1961 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1962 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1963 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1964 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1965 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1966 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1967 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1968 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1969 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1970 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1971 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1972 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1973 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1974 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1975 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1976 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1977 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1978 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1979 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1980 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1981 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1982 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1983 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1984 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1985 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1986 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1987 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1988 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1989 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1990 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1991 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1992 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1993 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1994 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1995 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1996 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1997 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1998 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1999 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 2000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 2001 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 2002 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 2003 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 2004 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 2005 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 2006 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 2007 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 2008 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 2009 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 2010 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 2011 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 2012 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 diff --git a/rLPJGUESS/inst/extdata/outputsForTests/run_npatch/outDirectory/anpp.out b/rLPJGUESS/inst/extdata/outputsForTests/run_npatch/outDirectory/anpp.out deleted file mode 100644 index 37b6c2e..0000000 --- a/rLPJGUESS/inst/extdata/outputsForTests/run_npatch/outDirectory/anpp.out +++ /dev/null @@ -1,63 +0,0 @@ - Lon Lat Year Abi_alb BES Bet_pen Bet_pub Car_bet Cor_ave Fag_syl Fra_exc Jun_oxy MRS Pic_abi Pic_sit Pin_syl Pin_hal Pop_tre Que_coc Que_ile Que_pub Que_rob Til_cor Ulm_gla C3_gr C4_gr Total - 10.45 51.08 1951 0.000 0.001 0.024 0.139 0.025 0.004 0.202 0.031 0.000 0.000 0.001 0.002 0.002 0.000 0.016 0.000 0.000 0.005 0.030 0.019 0.023 0.000 0.000 0.523 - 10.45 51.08 1952 0.000 0.000 0.020 0.127 0.022 0.003 0.203 0.027 0.000 0.000 0.001 0.001 0.001 0.000 0.013 0.000 0.000 0.005 0.025 0.015 0.020 0.000 0.000 0.481 - 10.45 51.08 1953 0.000 0.000 0.018 0.140 0.023 0.003 0.218 0.029 0.000 0.000 0.001 0.001 0.001 0.000 0.012 0.000 0.000 0.006 0.027 0.015 0.021 0.000 0.000 0.514 - 10.45 51.08 1954 0.000 0.000 0.016 0.125 0.021 0.002 0.190 0.026 0.000 0.000 0.001 0.001 0.001 0.000 0.011 0.000 0.000 0.005 0.024 0.014 0.020 0.000 0.000 0.459 - 10.45 51.08 1955 0.000 0.000 0.016 0.134 0.022 0.002 0.187 0.027 0.000 0.000 0.001 0.000 0.001 0.000 0.011 0.000 0.000 0.005 0.025 0.014 0.021 0.000 0.000 0.465 - 10.45 51.08 1956 0.000 0.000 0.015 0.140 0.022 0.002 0.197 0.027 0.000 0.000 0.001 0.000 0.001 0.000 0.010 0.000 0.000 0.005 0.026 0.014 0.021 0.000 0.000 0.483 - 10.45 51.08 1957 0.000 0.000 0.015 0.160 0.023 0.002 0.206 0.028 0.000 0.000 0.001 0.000 0.001 0.000 0.010 0.000 0.000 0.005 0.026 0.014 0.021 0.000 0.000 0.512 - 10.45 51.08 1958 0.000 0.000 0.013 0.151 0.022 0.001 0.200 0.026 0.000 0.000 0.001 0.000 0.001 0.000 0.008 0.000 0.000 0.004 0.024 0.013 0.021 0.000 0.000 0.486 - 10.45 51.08 1959 0.000 0.000 0.008 0.135 0.017 0.001 0.228 0.021 0.000 0.000 0.001 0.000 0.000 0.000 0.005 0.000 0.000 0.006 0.022 0.008 0.015 0.000 0.000 0.465 - 10.45 51.08 1960 0.000 0.000 0.009 0.166 0.021 0.001 0.200 0.025 0.000 0.000 0.001 0.000 0.000 0.000 0.005 0.000 0.000 0.005 0.025 0.012 0.020 0.000 0.000 0.490 - 10.45 51.08 1961 0.000 0.000 0.009 0.175 0.022 0.001 0.207 0.026 0.000 0.000 0.001 0.000 0.000 0.000 0.005 0.000 0.000 0.005 0.025 0.011 0.020 0.000 0.000 0.506 - 10.45 51.08 1962 0.000 0.000 0.006 0.152 0.016 0.000 0.204 0.020 0.000 0.000 0.001 0.000 0.000 0.000 0.003 0.000 0.000 0.005 0.020 0.008 0.014 0.001 0.000 0.448 - 10.45 51.08 1963 0.000 0.000 0.007 0.171 0.018 0.000 0.212 0.023 0.000 0.000 0.001 0.000 0.000 0.000 0.003 0.000 0.000 0.004 0.022 0.009 0.017 0.000 0.000 0.487 - 10.45 51.08 1964 0.000 0.000 0.005 0.157 0.015 0.000 0.219 0.020 0.000 0.000 0.001 0.000 0.000 0.000 0.002 0.000 0.000 0.005 0.020 0.007 0.015 0.000 0.000 0.465 - 10.45 51.08 1965 0.000 0.000 0.006 0.185 0.017 0.000 0.207 0.023 0.000 0.000 0.001 0.000 0.000 0.000 0.002 0.000 0.000 0.004 0.022 0.009 0.018 0.000 0.000 0.494 - 10.45 51.08 1966 0.000 0.000 0.005 0.191 0.018 0.000 0.231 0.025 0.000 0.000 0.001 0.000 0.000 0.000 0.002 0.000 0.000 0.005 0.024 0.009 0.019 0.000 0.000 0.532 - 10.45 51.08 1967 0.000 0.000 0.004 0.189 0.017 0.000 0.211 0.022 0.000 0.000 0.001 0.000 0.000 0.000 0.002 0.000 0.000 0.005 0.021 0.007 0.017 0.000 0.000 0.496 - 10.45 51.08 1968 0.000 0.000 0.004 0.189 0.015 0.000 0.143 0.021 0.000 0.000 0.000 0.000 0.000 0.000 0.001 0.000 0.000 0.005 0.019 0.006 0.015 -0.000 0.000 0.420 - 10.45 51.08 1969 0.000 0.000 0.004 0.180 0.014 0.000 0.141 0.021 0.000 0.000 0.000 0.000 0.000 0.000 0.001 0.000 0.000 0.004 0.018 0.006 0.015 -0.000 0.000 0.404 - 10.45 51.08 1970 0.000 0.002 0.006 0.188 0.018 0.004 0.136 0.022 0.000 0.000 0.001 0.002 0.002 0.000 0.007 0.000 0.000 0.004 0.021 0.009 0.017 0.046 0.000 0.483 - 10.45 51.08 1971 0.000 0.002 0.007 0.175 0.018 0.006 0.147 0.020 0.000 0.000 0.002 0.002 0.003 0.000 0.009 0.000 0.000 0.004 0.021 0.009 0.017 0.020 0.000 0.463 - 10.45 51.08 1972 0.000 0.002 0.009 0.219 0.023 0.007 0.143 0.024 0.000 0.000 0.002 0.003 0.004 0.000 0.014 0.000 0.000 0.004 0.025 0.013 0.021 0.005 0.000 0.518 - 10.45 51.08 1973 0.000 0.002 0.010 0.180 0.021 0.008 0.135 0.021 0.000 0.000 0.002 0.003 0.004 0.000 0.015 0.000 0.000 0.004 0.022 0.012 0.018 -0.001 0.000 0.457 - 10.45 51.08 1974 0.000 0.001 0.012 0.238 0.026 0.009 0.151 0.027 0.000 0.000 0.002 0.003 0.004 0.000 0.018 0.000 0.000 0.005 0.027 0.014 0.023 -0.000 0.000 0.560 - 10.45 51.08 1975 0.000 0.001 0.011 0.213 0.023 0.008 0.135 0.024 0.000 0.000 0.002 0.002 0.003 0.000 0.016 0.000 0.000 0.004 0.025 0.013 0.021 0.000 0.000 0.500 - 10.45 51.08 1976 0.000 0.001 0.009 0.165 0.018 0.006 0.142 0.017 0.000 0.000 0.002 0.002 0.002 0.000 0.013 0.000 0.000 0.003 0.019 0.010 0.015 0.000 0.000 0.424 - 10.45 51.08 1977 0.000 0.001 0.011 0.132 0.022 0.007 0.135 0.021 0.000 0.000 0.002 0.002 0.002 0.000 0.016 0.000 0.000 0.004 0.023 0.012 0.018 0.000 0.000 0.407 - 10.45 51.08 1978 0.000 0.000 0.011 0.133 0.022 0.006 0.135 0.022 0.000 0.000 0.002 0.001 0.002 0.000 0.015 0.000 0.000 0.004 0.022 0.012 0.018 0.000 0.000 0.405 - 10.45 51.08 1979 0.000 0.002 0.015 0.132 0.026 0.008 0.127 0.023 0.000 0.000 0.002 0.003 0.004 0.000 0.018 0.000 0.000 0.004 0.024 0.016 0.021 0.046 0.000 0.470 - 10.45 51.08 1980 0.000 0.003 0.017 0.139 0.027 0.008 0.130 0.023 0.000 0.000 0.003 0.003 0.005 0.000 0.019 0.000 0.000 0.004 0.024 0.016 0.022 0.024 0.000 0.465 - 10.45 51.08 1981 0.000 0.002 0.023 0.156 0.035 0.010 0.153 0.028 0.000 0.000 0.003 0.003 0.005 0.000 0.024 0.000 0.000 0.005 0.030 0.022 0.027 -0.002 0.000 0.525 - 10.45 51.08 1982 0.000 0.002 0.019 0.106 0.028 0.008 0.132 0.021 0.000 0.000 0.003 0.003 0.006 0.000 0.020 0.000 0.000 0.004 0.023 0.018 0.021 -0.000 0.000 0.413 - 10.45 51.08 1983 0.000 0.001 0.024 0.150 0.036 0.010 0.157 0.029 0.000 0.000 0.002 0.002 0.005 0.000 0.025 0.000 0.000 0.004 0.031 0.023 0.029 -0.000 0.000 0.529 - 10.45 51.08 1984 0.000 0.001 0.021 0.141 0.033 0.008 0.131 0.026 0.000 0.000 0.003 0.002 0.005 0.000 0.022 0.000 0.000 0.004 0.029 0.021 0.027 0.001 0.000 0.475 - 10.45 51.08 1985 0.000 0.001 0.023 0.165 0.036 0.008 0.165 0.029 0.000 0.000 0.002 0.002 0.004 0.000 0.024 0.000 0.000 0.005 0.031 0.022 0.030 0.001 0.000 0.548 - 10.45 51.08 1986 0.000 0.001 0.022 0.171 0.037 0.007 0.156 0.029 0.000 0.000 0.002 0.001 0.004 0.000 0.023 0.000 0.000 0.004 0.032 0.021 0.031 0.000 0.000 0.540 - 10.45 51.08 1987 0.000 0.000 0.021 0.182 0.036 0.006 0.153 0.028 0.000 0.000 0.002 0.001 0.003 0.000 0.021 0.000 0.000 0.005 0.031 0.020 0.030 0.000 0.000 0.539 - 10.45 51.08 1988 0.000 0.000 0.016 0.158 0.030 0.004 0.158 0.023 0.000 0.000 0.002 0.001 0.002 0.000 0.016 0.000 0.000 0.004 0.026 0.015 0.025 0.000 0.000 0.481 - 10.45 51.08 1989 0.000 0.000 0.014 0.082 0.027 0.003 0.171 0.020 0.000 0.000 0.002 0.000 0.002 0.000 0.013 0.000 0.000 0.004 0.023 0.013 0.022 0.000 0.000 0.398 - 10.45 51.08 1990 0.000 0.000 0.017 0.109 0.033 0.004 0.185 0.026 0.000 0.000 0.002 0.000 0.002 0.000 0.015 0.000 0.000 0.005 0.028 0.016 0.029 0.000 0.000 0.470 - 10.45 51.08 1991 0.000 0.000 0.012 0.094 0.025 0.002 0.161 0.021 0.000 0.000 0.002 0.000 0.001 0.000 0.011 0.000 0.000 0.005 0.021 0.012 0.022 0.035 0.000 0.425 - 10.45 51.08 1992 0.000 0.000 0.015 0.111 0.031 0.003 0.151 0.027 0.000 0.000 0.002 0.000 0.002 0.000 0.014 0.000 0.000 0.004 0.026 0.015 0.029 0.028 0.000 0.458 - 10.45 51.08 1993 0.000 0.000 0.017 0.148 0.041 0.004 0.186 0.036 0.000 0.000 0.002 0.000 0.002 0.000 0.016 0.000 0.000 0.006 0.034 0.019 0.038 0.011 0.000 0.559 - 10.45 51.08 1994 0.000 0.000 0.016 0.163 0.041 0.003 0.173 0.037 0.000 0.000 0.002 0.000 0.002 0.000 0.015 0.000 0.000 0.005 0.035 0.019 0.038 0.000 0.000 0.551 - 10.45 51.08 1995 0.000 0.000 0.015 0.167 0.039 0.003 0.167 0.037 0.000 0.000 0.002 0.000 0.001 0.000 0.014 0.000 0.000 0.005 0.034 0.017 0.038 -0.000 0.000 0.539 - 10.45 51.08 1996 0.000 0.000 0.013 0.163 0.036 0.002 0.165 0.033 0.000 0.000 0.002 0.000 0.001 0.000 0.012 0.000 0.000 0.005 0.031 0.016 0.035 -0.000 0.000 0.514 - 10.45 51.08 1997 0.000 0.000 0.012 0.181 0.037 0.002 0.181 0.036 0.000 0.000 0.002 0.000 0.001 0.000 0.011 0.000 0.000 0.005 0.032 0.015 0.037 0.000 0.000 0.552 - 10.45 51.08 1998 0.000 0.000 0.010 0.177 0.033 0.002 0.183 0.033 0.000 0.000 0.002 0.000 0.001 0.000 0.009 0.000 0.000 0.006 0.029 0.013 0.035 0.000 0.000 0.532 - 10.45 51.08 1999 0.000 0.000 0.012 0.204 0.038 0.002 0.194 0.038 0.000 0.000 0.002 0.000 0.001 0.000 0.009 0.000 0.000 0.006 0.032 0.015 0.040 0.000 0.000 0.593 - 10.45 51.08 2000 0.000 0.000 0.009 0.190 0.031 0.001 0.179 0.033 0.000 0.000 0.002 0.000 0.000 0.000 0.006 0.000 0.000 0.005 0.027 0.012 0.035 0.000 0.000 0.531 - 10.45 51.08 2001 0.000 0.000 0.008 0.199 0.031 0.001 0.186 0.034 0.000 0.000 0.002 0.000 0.000 0.000 0.006 0.000 0.000 0.005 0.027 0.011 0.036 0.000 0.000 0.546 - 10.45 51.08 2002 0.000 0.000 0.007 0.206 0.030 0.001 0.169 0.032 0.000 0.000 0.002 0.000 0.000 0.000 0.005 0.000 0.000 0.005 0.025 0.011 0.034 0.000 0.000 0.526 - 10.45 51.08 2003 0.000 0.000 0.005 0.176 0.025 0.001 0.176 0.028 0.000 0.000 0.002 0.000 0.000 0.000 0.004 0.000 0.000 0.004 0.021 0.008 0.030 0.000 0.000 0.481 - 10.45 51.08 2004 0.000 0.000 0.005 0.213 0.029 0.001 0.215 0.032 0.000 0.000 0.002 0.000 0.000 0.000 0.004 0.000 0.000 0.006 0.024 0.009 0.034 0.000 0.000 0.574 - 10.45 51.08 2005 0.000 0.000 0.005 0.226 0.028 0.000 0.204 0.031 0.000 0.000 0.002 0.000 0.000 0.000 0.003 0.000 0.000 0.004 0.023 0.009 0.034 0.000 0.000 0.570 - 10.45 51.08 2006 0.000 0.000 0.004 0.226 0.028 0.000 0.192 0.032 0.000 0.000 0.002 0.000 0.000 0.000 0.002 0.000 0.000 0.003 0.022 0.007 0.034 0.000 0.000 0.552 - 10.45 51.08 2007 0.000 0.000 0.003 0.251 0.028 0.000 0.200 0.035 0.000 0.000 0.002 0.000 0.000 0.000 0.002 0.000 0.000 0.004 0.024 0.007 0.038 0.000 0.000 0.596 - 10.45 51.08 2008 0.000 0.000 0.003 0.219 0.024 0.000 0.191 0.028 0.000 0.000 0.002 0.000 0.000 0.000 0.001 0.000 0.000 0.003 0.018 0.006 0.030 0.000 0.000 0.525 - 10.45 51.08 2009 0.000 0.000 0.002 0.231 0.023 0.000 0.192 0.028 0.000 0.000 0.002 0.000 0.000 0.000 0.001 0.000 0.000 0.003 0.018 0.006 0.029 0.000 0.000 0.536 - 10.45 51.08 2010 0.000 0.000 0.002 0.244 0.022 0.000 0.181 0.028 0.000 0.000 0.002 0.000 0.000 0.000 0.001 0.000 0.000 0.003 0.017 0.005 0.029 0.000 0.000 0.533 - 10.45 51.08 2011 0.000 0.000 0.002 0.256 0.022 0.000 0.216 0.028 0.000 0.000 0.003 0.000 0.000 0.000 0.001 0.000 0.000 0.003 0.018 0.005 0.030 0.000 0.000 0.584 - 10.45 51.08 2012 0.000 0.000 0.001 0.228 0.017 0.000 0.191 0.024 0.000 0.000 0.002 0.000 0.000 0.000 0.001 0.000 0.000 0.003 0.014 0.004 0.026 0.000 0.000 0.513 diff --git a/rLPJGUESS/inst/extdata/outputsForTests/run_npatch/outDirectory/cflux.out b/rLPJGUESS/inst/extdata/outputsForTests/run_npatch/outDirectory/cflux.out deleted file mode 100644 index a84e1e9..0000000 --- a/rLPJGUESS/inst/extdata/outputsForTests/run_npatch/outDirectory/cflux.out +++ /dev/null @@ -1,63 +0,0 @@ - Lon Lat Year Veg Repr Soil Fire Est NEE - 10.45 51.08 1951 -0.523 0.052 0.413 0.015 0.000 -0.04305 - 10.45 51.08 1952 -0.481 0.048 0.422 0.036 -0.000 0.02489 - 10.45 51.08 1953 -0.514 0.051 0.481 0.027 0.000 0.04479 - 10.45 51.08 1954 -0.459 0.046 0.399 0.022 -0.000 0.00836 - 10.45 51.08 1955 -0.465 0.047 0.365 0.013 0.000 -0.04051 - 10.45 51.08 1956 -0.483 0.048 0.351 0.005 0.000 -0.07787 - 10.45 51.08 1957 -0.512 0.051 0.423 0.015 0.000 -0.02277 - 10.45 51.08 1958 -0.486 0.049 0.399 0.009 -0.000 -0.02931 - 10.45 51.08 1959 -0.465 0.046 0.507 0.049 -0.000 0.13758 - 10.45 51.08 1960 -0.490 0.049 0.410 0.022 -0.008 -0.01789 - 10.45 51.08 1961 -0.506 0.051 0.467 0.025 -0.000 0.03631 - 10.45 51.08 1962 -0.448 0.045 0.400 0.034 0.000 0.03188 - 10.45 51.08 1963 -0.487 0.049 0.393 0.017 0.000 -0.02787 - 10.45 51.08 1964 -0.465 0.047 0.436 0.022 0.000 0.03905 - 10.45 51.08 1965 -0.494 0.049 0.348 0.011 0.000 -0.08589 - 10.45 51.08 1966 -0.532 0.053 0.380 0.008 0.000 -0.09009 - 10.45 51.08 1967 -0.496 0.050 0.416 0.012 0.000 -0.01785 - 10.45 51.08 1968 -0.420 0.042 0.456 0.021 0.000 0.09928 - 10.45 51.08 1969 -0.404 0.040 0.420 0.020 -0.089 -0.01326 - 10.45 51.08 1970 -0.483 0.048 0.415 0.033 -0.003 0.01073 - 10.45 51.08 1971 -0.463 0.046 0.522 0.053 -0.001 0.15746 - 10.45 51.08 1972 -0.518 0.052 0.379 0.007 -0.000 -0.07960 - 10.45 51.08 1973 -0.457 0.046 0.491 0.041 0.000 0.12144 - 10.45 51.08 1974 -0.560 0.056 0.415 0.007 -0.000 -0.08253 - 10.45 51.08 1975 -0.500 0.050 0.487 0.027 -0.000 0.06325 - 10.45 51.08 1976 -0.424 0.042 0.493 0.046 0.000 0.15744 - 10.45 51.08 1977 -0.407 0.041 0.411 0.017 0.000 0.06184 - 10.45 51.08 1978 -0.405 0.040 0.427 0.027 -0.090 -0.00087 - 10.45 51.08 1979 -0.470 0.047 0.460 0.040 -0.001 0.07537 - 10.45 51.08 1980 -0.465 0.047 0.467 0.044 -0.000 0.09220 - 10.45 51.08 1981 -0.525 0.053 0.450 0.016 -0.000 -0.00633 - 10.45 51.08 1982 -0.413 0.041 0.597 0.053 0.000 0.27765 - 10.45 51.08 1983 -0.529 0.053 0.509 0.042 -0.005 0.07039 - 10.45 51.08 1984 -0.475 0.047 0.374 0.007 0.000 -0.04628 - 10.45 51.08 1985 -0.548 0.055 0.505 0.058 0.000 0.07002 - 10.45 51.08 1986 -0.540 0.054 0.451 0.033 0.000 -0.00242 - 10.45 51.08 1987 -0.539 0.054 0.368 0.007 0.000 -0.11078 - 10.45 51.08 1988 -0.481 0.048 0.528 1.470 0.000 1.56483 - 10.45 51.08 1989 -0.398 0.040 0.528 0.031 0.000 0.20075 - 10.45 51.08 1990 -0.470 0.047 0.462 0.031 -0.081 -0.01109 - 10.45 51.08 1991 -0.425 0.042 0.452 0.039 -0.009 0.10066 - 10.45 51.08 1992 -0.458 0.046 0.477 0.030 -0.000 0.09538 - 10.45 51.08 1993 -0.559 0.056 0.391 0.018 -0.000 -0.09397 - 10.45 51.08 1994 -0.551 0.055 0.447 0.012 -0.000 -0.03704 - 10.45 51.08 1995 -0.539 0.054 0.393 0.007 -0.000 -0.08480 - 10.45 51.08 1996 -0.514 0.051 0.324 0.005 0.000 -0.13342 - 10.45 51.08 1997 -0.552 0.055 0.438 0.026 0.000 -0.03243 - 10.45 51.08 1998 -0.532 0.053 0.422 0.022 0.000 -0.03535 - 10.45 51.08 1999 -0.593 0.059 0.446 0.020 0.000 -0.06821 - 10.45 51.08 2000 -0.531 0.053 0.453 0.025 -0.000 -0.00046 - 10.45 51.08 2001 -0.546 0.055 0.414 0.019 0.000 -0.05902 - 10.45 51.08 2002 -0.526 0.053 0.367 0.004 0.000 -0.10196 - 10.45 51.08 2003 -0.481 0.048 0.478 0.028 0.000 0.07342 - 10.45 51.08 2004 -0.574 0.057 0.410 0.024 -0.000 -0.08323 - 10.45 51.08 2005 -0.570 0.057 0.423 0.022 0.000 -0.06834 - 10.45 51.08 2006 -0.552 0.055 0.429 0.016 0.000 -0.05161 - 10.45 51.08 2007 -0.596 0.060 0.371 0.009 0.000 -0.15584 - 10.45 51.08 2008 -0.525 0.053 0.427 0.022 0.000 -0.02306 - 10.45 51.08 2009 -0.536 0.054 0.391 0.014 0.000 -0.07710 - 10.45 51.08 2010 -0.533 0.053 0.335 0.011 0.000 -0.13295 - 10.45 51.08 2011 -0.584 0.058 0.425 0.021 0.000 -0.07978 - 10.45 51.08 2012 -0.513 0.051 0.397 0.017 0.000 -0.04673 diff --git a/rLPJGUESS/inst/extdata/outputsForTests/run_npatch/outDirectory/clitter.out b/rLPJGUESS/inst/extdata/outputsForTests/run_npatch/outDirectory/clitter.out deleted file mode 100644 index 9ec8c6f..0000000 --- a/rLPJGUESS/inst/extdata/outputsForTests/run_npatch/outDirectory/clitter.out +++ /dev/null @@ -1,63 +0,0 @@ - Lon Lat Year Abi_alb BES Bet_pen Bet_pub Car_bet Cor_ave Fag_syl Fra_exc Jun_oxy MRS Pic_abi Pic_sit Pin_syl Pin_hal Pop_tre Que_coc Que_ile Que_pub Que_rob Til_cor Ulm_gla C3_gr C4_gr Total - 10.45 51.08 1951 0.000 0.002 0.016 0.052 0.014 0.004 0.098 0.016 0.000 0.000 0.001 0.002 0.003 0.000 0.013 0.000 0.000 0.003 0.025 0.013 0.012 0.000 0.000 0.274 - 10.45 51.08 1952 0.000 0.002 0.028 0.051 0.014 0.005 0.129 0.027 0.000 0.000 0.001 0.002 0.002 0.000 0.014 0.000 0.000 0.003 0.019 0.010 0.012 0.000 0.000 0.319 - 10.45 51.08 1953 0.000 0.001 0.020 0.393 0.017 0.003 0.096 0.062 0.000 0.000 0.001 0.001 0.001 0.000 0.008 0.000 0.000 0.003 0.019 0.015 0.013 0.000 0.000 0.652 - 10.45 51.08 1954 0.000 0.001 0.018 0.066 0.017 0.005 0.097 0.017 0.000 0.000 0.001 0.001 0.001 0.000 0.014 0.000 0.000 0.003 0.015 0.013 0.013 0.000 0.000 0.280 - 10.45 51.08 1955 0.000 0.001 0.018 0.051 0.013 0.008 0.365 0.020 0.000 0.000 0.001 0.001 0.001 0.000 0.012 0.000 0.000 0.003 0.015 0.011 0.013 0.000 0.000 0.533 - 10.45 51.08 1956 0.000 0.000 0.017 0.052 0.024 0.003 0.092 0.020 0.000 0.000 0.001 0.001 0.001 0.000 0.010 0.000 0.000 0.003 0.017 0.009 0.019 0.000 0.000 0.268 - 10.45 51.08 1957 0.000 0.001 0.017 0.080 0.013 0.003 0.092 0.021 0.000 0.000 0.001 0.000 0.001 0.000 0.016 0.000 0.000 0.018 0.023 0.013 0.016 0.000 0.000 0.314 - 10.45 51.08 1958 0.000 0.000 0.021 0.057 0.016 0.002 1.862 0.020 0.000 0.000 0.001 0.000 0.002 0.000 0.016 0.000 0.000 0.003 0.014 0.011 0.017 0.000 0.000 2.040 - 10.45 51.08 1959 0.000 0.000 0.025 0.058 0.017 0.003 0.078 0.024 0.000 0.000 0.000 0.003 0.001 0.000 0.013 0.000 0.000 0.003 0.014 0.011 0.012 0.000 0.000 0.260 - 10.45 51.08 1960 0.000 0.000 0.008 0.062 0.013 0.001 0.082 0.015 0.000 0.000 0.002 0.000 0.000 0.000 0.006 0.000 0.000 0.019 0.031 0.008 0.015 0.000 0.000 0.264 - 10.45 51.08 1961 0.000 0.000 0.005 0.085 0.024 0.002 0.084 0.018 0.000 0.000 0.000 0.000 0.000 0.000 0.010 0.000 0.000 0.002 0.014 0.010 0.011 0.007 0.000 0.272 - 10.45 51.08 1962 0.000 0.000 0.010 0.062 0.019 0.003 0.085 0.014 0.000 0.000 0.000 0.000 0.000 0.000 0.005 0.000 0.000 0.002 0.014 0.009 0.020 0.001 0.000 0.246 - 10.45 51.08 1963 0.000 0.000 0.013 0.066 0.021 0.002 0.090 0.023 0.000 0.000 0.000 0.000 0.006 0.000 0.011 0.000 0.000 0.002 0.017 0.009 0.011 0.001 0.000 0.272 - 10.45 51.08 1964 0.000 0.000 0.012 0.095 0.011 0.000 0.088 0.014 0.000 0.000 0.000 0.000 0.000 0.000 0.004 0.000 0.000 0.002 0.013 0.010 0.010 0.000 0.000 0.261 - 10.45 51.08 1965 0.000 0.000 0.006 0.510 0.014 0.002 0.091 0.013 0.000 0.000 0.000 0.000 0.000 0.000 0.001 0.000 0.000 0.002 0.022 0.008 0.010 0.000 0.000 0.680 - 10.45 51.08 1966 0.000 0.000 0.009 0.076 0.010 0.001 0.091 0.022 0.000 0.000 0.000 0.000 0.000 0.000 0.001 0.000 0.000 0.002 0.017 0.010 0.010 0.000 0.000 0.250 - 10.45 51.08 1967 0.000 0.000 0.003 0.080 0.028 0.001 2.285 0.044 0.000 0.000 0.013 0.002 0.001 0.000 0.006 0.000 0.000 0.002 0.360 0.005 0.023 0.000 0.000 2.853 - 10.45 51.08 1968 0.000 0.000 0.003 0.119 0.013 0.000 0.063 0.013 0.000 0.000 0.000 0.000 0.000 0.000 0.006 0.000 0.000 0.002 0.012 0.007 0.010 0.000 0.000 0.248 - 10.45 51.08 1969 0.000 0.000 0.011 0.068 0.009 0.001 0.063 0.017 0.000 0.000 0.000 0.000 0.000 0.000 0.003 0.000 0.000 0.003 0.016 0.005 0.014 0.000 0.000 0.211 - 10.45 51.08 1970 0.000 0.000 0.015 0.071 0.010 0.002 0.064 0.013 0.000 0.000 0.000 0.000 0.001 0.000 0.009 0.000 0.000 0.003 0.012 0.008 0.015 0.049 0.000 0.272 - 10.45 51.08 1971 0.000 0.000 0.012 0.074 0.015 0.001 0.065 0.022 0.000 0.000 0.001 0.001 0.001 0.000 0.002 0.000 0.000 0.002 0.021 0.010 0.015 0.043 0.000 0.285 - 10.45 51.08 1972 0.000 0.001 0.003 0.120 0.020 0.002 0.067 0.018 0.000 0.000 0.001 0.001 0.001 0.000 0.006 0.000 0.000 0.002 0.027 0.018 0.015 0.023 0.000 0.324 - 10.45 51.08 1973 0.000 0.001 0.010 0.122 0.020 0.003 0.067 0.022 0.000 0.000 0.001 0.002 0.002 0.000 0.005 0.000 0.000 0.002 0.022 0.011 0.015 0.008 0.000 0.312 - 10.45 51.08 1974 0.000 0.001 0.010 0.102 0.035 0.003 0.068 0.013 0.000 0.000 0.001 0.002 0.002 0.000 0.009 0.000 0.000 0.002 0.018 0.006 0.011 0.001 0.000 0.285 - 10.45 51.08 1975 0.000 0.001 0.005 0.130 0.013 0.004 0.069 0.023 0.000 0.000 0.001 0.004 0.002 0.000 0.008 0.000 0.000 0.002 0.014 0.007 0.032 0.000 0.000 0.316 - 10.45 51.08 1976 0.000 0.001 0.011 1.314 0.059 0.004 0.162 0.077 0.000 0.000 0.002 0.002 0.002 0.000 0.009 0.000 0.000 0.002 0.078 0.023 0.070 0.000 0.000 1.816 - 10.45 51.08 1977 0.000 0.001 0.005 0.077 0.016 0.004 0.064 0.012 0.000 0.000 0.002 0.002 0.002 0.000 0.009 0.000 0.000 0.002 0.035 0.011 0.010 0.000 0.000 0.252 - 10.45 51.08 1978 0.000 0.001 0.006 0.047 0.012 0.004 0.064 0.037 0.000 0.000 0.001 0.002 0.002 0.000 0.013 0.000 0.000 0.002 0.012 0.011 0.015 0.000 0.000 0.229 - 10.45 51.08 1979 0.000 0.001 0.011 0.050 0.022 0.005 0.065 0.038 0.000 0.000 0.002 0.002 0.002 0.000 0.012 0.000 0.000 0.002 0.017 0.014 0.016 0.049 0.000 0.309 - 10.45 51.08 1980 0.000 0.002 0.007 0.556 0.020 0.005 0.472 0.012 0.000 0.000 0.002 0.002 0.003 0.000 0.011 0.000 0.000 0.002 0.015 0.008 0.011 0.043 0.000 1.171 - 10.45 51.08 1981 0.000 0.003 0.014 0.057 0.017 0.005 0.060 0.018 0.000 0.000 0.002 0.002 0.003 0.000 0.010 0.000 0.000 0.002 0.014 0.009 0.012 0.026 0.000 0.254 - 10.45 51.08 1982 0.000 0.001 0.011 0.056 0.025 0.007 0.062 0.016 0.000 0.000 0.002 0.002 0.003 0.000 0.016 0.000 0.000 0.002 0.015 0.010 0.013 0.004 0.000 0.246 - 10.45 51.08 1983 0.000 0.001 0.021 0.572 0.028 0.008 0.071 0.037 0.000 0.000 0.002 0.002 0.004 0.000 0.015 0.000 0.000 0.002 0.021 0.016 0.015 0.000 0.000 0.816 - 10.45 51.08 1984 0.000 0.001 0.011 0.057 0.020 0.007 0.064 0.020 0.000 0.000 0.002 0.002 0.004 0.000 0.015 0.000 0.000 0.002 0.021 0.015 0.026 0.004 0.000 0.271 - 10.45 51.08 1985 0.000 0.002 0.013 0.063 0.018 0.009 0.064 0.014 0.000 0.000 0.002 0.002 0.004 0.000 0.016 0.000 0.000 0.002 0.016 0.013 0.015 0.001 0.000 0.255 - 10.45 51.08 1986 0.000 0.001 0.014 0.063 0.020 0.006 0.066 0.021 0.000 0.000 0.002 0.002 0.003 0.000 0.020 0.000 0.000 0.002 0.025 0.015 0.016 0.001 0.000 0.277 - 10.45 51.08 1987 0.000 0.002 0.016 0.075 0.020 0.005 0.067 0.016 0.000 0.000 0.002 0.001 0.003 0.000 0.014 0.000 0.000 0.026 0.017 0.019 0.017 0.000 0.000 0.301 - 10.45 51.08 1988 0.000 0.001 0.017 0.093 0.021 0.007 0.071 0.018 0.000 0.000 0.002 0.001 0.004 0.000 0.024 0.000 0.000 0.002 0.019 0.015 0.020 0.000 0.000 0.315 - 10.45 51.08 1989 0.000 0.001 0.017 0.047 0.028 0.005 0.063 0.016 0.000 0.000 0.002 0.001 0.003 0.000 0.019 0.000 0.000 0.002 0.040 0.018 0.018 0.000 0.000 0.278 - 10.45 51.08 1990 0.000 0.001 0.010 0.054 0.021 0.007 0.065 0.013 0.000 0.000 0.002 0.001 0.003 0.000 0.012 0.000 0.000 0.002 0.015 0.010 0.023 0.000 0.000 0.239 - 10.45 51.08 1991 0.000 0.000 0.018 0.040 0.021 0.006 0.072 0.013 0.000 0.000 0.004 0.001 0.002 0.000 0.010 0.000 0.000 0.002 0.044 0.016 0.015 0.057 0.000 0.322 - 10.45 51.08 1992 0.000 0.000 0.018 0.047 0.022 0.006 0.069 0.014 0.000 0.000 0.001 0.000 0.002 0.000 0.025 0.000 0.000 0.002 0.018 0.012 0.021 0.037 0.000 0.295 - 10.45 51.08 1993 0.000 0.001 0.016 0.057 0.024 0.005 0.071 0.017 0.000 0.000 0.001 0.000 0.002 0.000 0.012 0.000 0.000 0.002 0.015 0.009 0.021 0.027 0.000 0.281 - 10.45 51.08 1994 0.000 0.000 0.010 0.063 0.022 0.003 0.073 0.015 0.000 0.000 0.001 0.000 0.002 0.000 0.009 0.000 0.000 0.003 0.020 0.015 0.016 0.016 0.000 0.268 - 10.45 51.08 1995 0.000 0.000 0.013 0.063 0.020 0.003 0.076 0.020 0.000 0.000 0.001 0.000 0.001 0.000 0.008 0.000 0.000 0.003 0.017 0.012 0.018 0.001 0.000 0.256 - 10.45 51.08 1996 0.000 0.000 0.015 0.076 0.021 0.002 0.077 0.018 0.000 0.000 0.001 0.000 0.008 0.000 0.012 0.000 0.000 0.003 0.018 0.010 0.018 0.000 0.000 0.281 - 10.45 51.08 1997 0.000 0.000 0.008 0.061 0.031 0.003 0.078 0.021 0.000 0.000 0.001 0.000 0.001 0.000 0.013 0.000 0.000 0.003 0.022 0.012 0.019 0.000 0.000 0.273 - 10.45 51.08 1998 0.000 0.000 0.007 0.068 0.024 0.003 0.083 0.018 0.000 0.000 0.003 0.000 0.001 0.000 0.019 0.000 0.000 0.003 0.022 0.010 0.019 0.000 0.000 0.282 - 10.45 51.08 1999 0.000 0.000 0.010 0.071 0.034 0.003 0.081 0.019 0.000 0.000 0.001 0.000 0.001 0.000 0.015 0.000 0.000 0.003 0.021 0.015 0.021 0.000 0.000 0.295 - 10.45 51.08 2000 0.000 0.001 0.009 0.078 0.020 0.010 0.083 0.024 0.000 0.000 0.001 0.000 0.008 0.000 0.013 0.000 0.000 0.003 0.023 0.013 0.023 0.000 0.000 0.308 - 10.45 51.08 2001 0.000 0.000 0.012 0.083 0.024 0.004 0.083 0.019 0.000 0.000 0.001 0.001 0.000 0.000 0.008 0.000 0.000 0.003 0.026 0.012 0.024 0.000 0.000 0.300 - 10.45 51.08 2002 0.000 0.000 0.021 0.096 0.022 0.002 0.084 0.027 0.000 0.000 0.001 0.000 0.000 0.000 0.004 0.000 0.000 0.003 0.025 0.010 0.023 0.000 0.000 0.320 - 10.45 51.08 2003 0.000 0.000 0.009 0.078 0.028 0.003 0.084 0.031 0.000 0.000 0.001 0.000 0.000 0.000 0.010 0.000 0.000 0.003 0.021 0.019 0.026 0.000 0.000 0.315 - 10.45 51.08 2004 0.000 0.000 0.010 0.099 0.018 0.000 0.085 0.017 0.000 0.000 0.001 0.000 0.000 0.000 0.014 0.000 0.000 0.031 0.017 0.012 0.018 0.000 0.000 0.323 - 10.45 51.08 2005 0.000 0.000 0.010 0.123 0.024 0.000 0.086 0.021 0.000 0.000 0.001 0.002 0.000 0.000 0.006 0.000 0.000 0.031 0.023 0.009 0.031 0.000 0.000 0.369 - 10.45 51.08 2006 0.000 0.000 0.014 0.116 0.017 0.000 0.087 0.046 0.000 0.000 0.001 0.000 0.000 0.000 0.011 0.000 0.000 0.002 0.022 0.008 0.017 0.000 0.000 0.342 - 10.45 51.08 2007 0.000 0.000 0.002 0.086 0.016 0.000 0.087 0.016 0.000 0.000 0.001 0.000 0.000 0.000 0.001 0.000 0.000 0.002 0.018 0.013 0.030 0.000 0.000 0.275 - 10.45 51.08 2008 0.000 0.000 0.013 0.087 0.037 0.001 0.088 0.021 0.000 0.000 0.001 0.000 0.000 0.000 0.007 0.000 0.000 0.002 0.021 0.007 0.025 0.000 0.000 0.312 - 10.45 51.08 2009 0.000 0.000 0.004 0.099 0.023 0.000 0.088 0.016 0.000 0.000 0.002 0.000 0.000 0.000 0.001 0.000 0.000 0.002 0.013 0.011 0.021 0.000 0.000 0.279 - 10.45 51.08 2010 0.000 0.000 0.004 0.093 0.032 0.002 0.089 0.024 0.000 0.000 0.002 0.000 0.000 0.000 0.003 0.000 0.000 0.002 0.017 0.009 0.016 0.000 0.000 0.294 - 10.45 51.08 2011 0.000 0.000 0.001 0.096 0.017 0.000 0.089 0.015 0.000 0.000 0.002 0.000 0.000 0.000 0.005 0.000 0.000 0.002 0.016 0.007 0.016 0.000 0.000 0.266 - 10.45 51.08 2012 0.000 0.000 0.009 0.137 0.020 0.000 0.090 0.024 0.000 0.000 0.002 0.000 0.000 0.000 0.001 0.000 0.000 0.004 0.014 0.010 0.020 0.000 0.000 0.332 diff --git a/rLPJGUESS/inst/extdata/outputsForTests/run_npatch/outDirectory/cmass.out b/rLPJGUESS/inst/extdata/outputsForTests/run_npatch/outDirectory/cmass.out deleted file mode 100644 index f694a2e..0000000 --- a/rLPJGUESS/inst/extdata/outputsForTests/run_npatch/outDirectory/cmass.out +++ /dev/null @@ -1,63 +0,0 @@ - Lon Lat Year Abi_alb BES Bet_pen Bet_pub Car_bet Cor_ave Fag_syl Fra_exc Jun_oxy MRS Pic_abi Pic_sit Pin_syl Pin_hal Pop_tre Que_coc Que_ile Que_pub Que_rob Til_cor Ulm_gla C3_gr C4_gr Total - 10.45 51.08 1951 0.000 0.004 0.136 1.793 0.183 0.028 5.534 0.279 0.000 0.000 0.014 0.011 0.011 0.000 0.074 0.000 0.000 0.113 0.569 0.098 0.145 0.000 0.000 8.993 - 10.45 51.08 1952 0.000 0.003 0.126 1.856 0.189 0.025 5.587 0.276 0.000 0.000 0.013 0.010 0.010 0.000 0.072 0.000 0.000 0.115 0.572 0.101 0.151 0.000 0.000 9.107 - 10.45 51.08 1953 0.000 0.002 0.122 1.588 0.193 0.025 5.688 0.240 0.000 0.000 0.013 0.009 0.010 0.000 0.075 0.000 0.000 0.117 0.577 0.100 0.157 0.000 0.000 8.917 - 10.45 51.08 1954 0.000 0.002 0.119 1.634 0.195 0.023 5.763 0.246 0.000 0.000 0.013 0.009 0.010 0.000 0.071 0.000 0.000 0.119 0.584 0.099 0.162 0.000 0.000 9.049 - 10.45 51.08 1955 0.000 0.001 0.115 1.704 0.201 0.017 5.566 0.250 0.000 0.000 0.013 0.009 0.009 0.000 0.069 0.000 0.000 0.121 0.591 0.100 0.168 0.000 0.000 8.934 - 10.45 51.08 1956 0.000 0.001 0.111 1.778 0.197 0.016 5.652 0.255 0.000 0.000 0.013 0.008 0.009 0.000 0.068 0.000 0.000 0.123 0.597 0.104 0.168 0.000 0.000 9.100 - 10.45 51.08 1957 0.000 0.000 0.108 1.843 0.204 0.014 5.746 0.259 0.000 0.000 0.013 0.008 0.009 0.000 0.061 0.000 0.000 0.109 0.597 0.104 0.171 0.000 0.000 9.246 - 10.45 51.08 1958 0.000 0.000 0.099 1.922 0.208 0.013 4.064 0.262 0.000 0.000 0.013 0.008 0.008 0.000 0.053 0.000 0.000 0.111 0.605 0.105 0.172 0.000 0.000 7.643 - 10.45 51.08 1959 0.000 0.000 0.081 1.985 0.206 0.010 4.191 0.257 0.000 0.000 0.013 0.005 0.007 0.000 0.044 0.000 0.000 0.113 0.610 0.102 0.174 0.000 0.000 7.800 - 10.45 51.08 1960 0.000 0.000 0.081 2.073 0.212 0.010 4.288 0.265 0.000 0.000 0.012 0.005 0.007 0.000 0.043 0.000 0.000 0.099 0.601 0.104 0.177 0.008 0.000 7.985 - 10.45 51.08 1961 0.000 0.000 0.084 2.145 0.208 0.009 4.391 0.271 0.000 0.000 0.012 0.005 0.007 0.000 0.038 0.000 0.000 0.101 0.610 0.104 0.183 0.001 0.000 8.169 - 10.45 51.08 1962 0.000 0.000 0.078 2.219 0.203 0.006 4.489 0.274 0.000 0.000 0.013 0.005 0.007 0.000 0.035 0.000 0.000 0.102 0.614 0.101 0.177 0.001 0.000 8.325 - 10.45 51.08 1963 0.000 0.000 0.072 2.307 0.198 0.005 4.589 0.271 0.000 0.000 0.013 0.005 0.001 0.000 0.027 0.000 0.000 0.104 0.617 0.100 0.181 0.000 0.000 8.490 - 10.45 51.08 1964 0.000 0.000 0.064 2.353 0.201 0.005 4.698 0.275 0.000 0.000 0.013 0.004 0.001 0.000 0.025 0.000 0.000 0.106 0.622 0.097 0.184 0.000 0.000 8.647 - 10.45 51.08 1965 0.000 0.000 0.063 2.010 0.203 0.003 4.794 0.282 0.000 0.000 0.013 0.004 0.001 0.000 0.025 0.000 0.000 0.107 0.620 0.096 0.189 0.000 0.000 8.412 - 10.45 51.08 1966 0.000 0.000 0.059 2.105 0.209 0.003 4.910 0.284 0.000 0.000 0.013 0.004 0.001 0.000 0.026 0.000 0.000 0.110 0.625 0.094 0.197 0.000 0.000 8.640 - 10.45 51.08 1967 0.000 0.000 0.060 2.195 0.196 0.002 2.815 0.260 0.000 0.000 0.000 0.002 0.000 0.000 0.021 0.000 0.000 0.111 0.284 0.095 0.189 0.000 0.000 6.233 - 10.45 51.08 1968 0.000 0.000 0.061 2.246 0.196 0.002 2.881 0.266 0.000 0.000 0.001 0.002 0.000 0.000 0.017 0.000 0.000 0.114 0.289 0.094 0.193 0.000 0.000 6.362 - 10.45 51.08 1969 0.000 0.002 0.055 2.344 0.203 0.004 2.945 0.269 0.000 0.000 0.001 0.004 0.002 0.000 0.018 0.000 0.000 0.115 0.292 0.097 0.194 0.061 0.000 6.604 - 10.45 51.08 1970 0.000 0.003 0.046 2.442 0.209 0.005 3.003 0.276 0.000 0.000 0.002 0.005 0.003 0.000 0.015 0.000 0.000 0.116 0.298 0.097 0.195 0.054 0.000 6.769 - 10.45 51.08 1971 0.000 0.004 0.040 2.526 0.210 0.009 3.071 0.271 0.000 0.000 0.003 0.006 0.005 0.000 0.021 0.000 0.000 0.118 0.296 0.095 0.196 0.029 0.000 6.900 - 10.45 51.08 1972 0.000 0.006 0.046 2.603 0.211 0.013 3.133 0.275 0.000 0.000 0.004 0.008 0.007 0.000 0.027 0.000 0.000 0.119 0.291 0.089 0.199 0.010 0.000 7.042 - 10.45 51.08 1973 0.000 0.006 0.045 2.643 0.211 0.018 3.188 0.272 0.000 0.000 0.005 0.009 0.008 0.000 0.036 0.000 0.000 0.120 0.289 0.088 0.201 0.001 0.000 7.140 - 10.45 51.08 1974 0.000 0.006 0.045 2.755 0.199 0.023 3.256 0.282 0.000 0.000 0.006 0.010 0.010 0.000 0.043 0.000 0.000 0.122 0.296 0.095 0.211 0.000 0.000 7.359 - 10.45 51.08 1975 0.000 0.006 0.050 2.816 0.207 0.026 3.309 0.281 0.000 0.000 0.007 0.008 0.011 0.000 0.050 0.000 0.000 0.123 0.305 0.099 0.197 0.000 0.000 7.493 - 10.45 51.08 1976 0.000 0.006 0.047 1.650 0.164 0.027 3.275 0.218 0.000 0.000 0.006 0.007 0.011 0.000 0.053 0.000 0.000 0.124 0.244 0.084 0.141 0.000 0.000 6.057 - 10.45 51.08 1977 0.000 0.005 0.051 1.691 0.168 0.029 3.332 0.226 0.000 0.000 0.006 0.007 0.011 0.000 0.057 0.000 0.000 0.126 0.230 0.085 0.148 0.000 0.000 6.171 - 10.45 51.08 1978 0.000 0.007 0.058 1.766 0.179 0.032 3.390 0.210 0.000 0.000 0.007 0.008 0.013 0.000 0.061 0.000 0.000 0.127 0.240 0.087 0.151 0.061 0.000 6.396 - 10.45 51.08 1979 0.000 0.007 0.061 1.834 0.181 0.034 3.439 0.192 0.000 0.000 0.008 0.008 0.015 0.000 0.065 0.000 0.000 0.128 0.244 0.087 0.154 0.054 0.000 6.511 - 10.45 51.08 1980 0.000 0.008 0.068 1.402 0.185 0.036 3.085 0.200 0.000 0.000 0.008 0.009 0.017 0.000 0.071 0.000 0.000 0.129 0.251 0.093 0.162 0.032 0.000 5.758 - 10.45 51.08 1981 0.000 0.007 0.075 1.486 0.199 0.040 3.162 0.208 0.000 0.000 0.009 0.010 0.019 0.000 0.083 0.000 0.000 0.132 0.265 0.104 0.175 0.005 0.000 5.976 - 10.45 51.08 1982 0.000 0.008 0.081 1.524 0.199 0.041 3.219 0.211 0.000 0.000 0.009 0.010 0.020 0.000 0.084 0.000 0.000 0.133 0.270 0.109 0.181 0.001 0.000 6.101 - 10.45 51.08 1983 0.000 0.008 0.081 1.087 0.203 0.042 3.289 0.200 0.000 0.000 0.009 0.010 0.021 0.000 0.092 0.000 0.000 0.135 0.277 0.114 0.192 0.005 0.000 5.765 - 10.45 51.08 1984 0.000 0.008 0.089 1.158 0.212 0.043 3.343 0.203 0.000 0.000 0.010 0.010 0.022 0.000 0.097 0.000 0.000 0.136 0.282 0.117 0.190 0.002 0.000 5.921 - 10.45 51.08 1985 0.000 0.007 0.097 1.242 0.227 0.041 3.428 0.214 0.000 0.000 0.010 0.009 0.022 0.000 0.102 0.000 0.000 0.138 0.294 0.124 0.202 0.001 0.000 6.158 - 10.45 51.08 1986 0.000 0.006 0.103 1.333 0.240 0.041 3.502 0.219 0.000 0.000 0.010 0.008 0.022 0.000 0.102 0.000 0.000 0.140 0.298 0.129 0.213 0.000 0.000 6.366 - 10.45 51.08 1987 0.000 0.004 0.107 1.422 0.253 0.041 3.572 0.229 0.000 0.000 0.009 0.008 0.021 0.000 0.107 0.000 0.000 0.118 0.308 0.127 0.223 0.000 0.000 6.550 - 10.45 51.08 1988 0.000 0.003 0.098 0.444 0.211 0.038 3.553 0.141 0.000 0.000 0.009 0.007 0.020 0.000 0.097 0.000 0.000 0.120 0.250 0.096 0.156 0.000 0.000 5.243 - 10.45 51.08 1989 0.000 0.002 0.094 0.470 0.208 0.036 3.644 0.143 0.000 0.000 0.009 0.007 0.019 0.000 0.090 0.000 0.000 0.122 0.230 0.090 0.159 0.000 0.000 5.323 - 10.45 51.08 1990 0.000 0.001 0.100 0.516 0.217 0.033 3.747 0.153 0.000 0.000 0.010 0.006 0.018 0.000 0.091 0.000 0.000 0.125 0.241 0.095 0.162 0.072 0.000 5.587 - 10.45 51.08 1991 0.000 0.001 0.094 0.563 0.218 0.030 3.821 0.159 0.000 0.000 0.007 0.006 0.017 0.000 0.091 0.000 0.000 0.127 0.217 0.090 0.169 0.046 0.000 5.655 - 10.45 51.08 1992 0.000 0.001 0.089 0.616 0.225 0.026 3.887 0.170 0.000 0.000 0.007 0.006 0.018 0.000 0.079 0.000 0.000 0.128 0.222 0.090 0.173 0.034 0.000 5.772 - 10.45 51.08 1993 0.000 0.000 0.089 0.691 0.238 0.025 3.984 0.184 0.000 0.000 0.007 0.006 0.017 0.000 0.080 0.000 0.000 0.131 0.238 0.098 0.186 0.016 0.000 5.993 - 10.45 51.08 1994 0.000 0.001 0.093 0.775 0.253 0.026 4.065 0.202 0.000 0.000 0.008 0.006 0.017 0.000 0.085 0.000 0.000 0.133 0.250 0.101 0.205 0.001 0.000 6.221 - 10.45 51.08 1995 0.000 0.001 0.094 0.863 0.268 0.026 4.140 0.215 0.000 0.000 0.008 0.006 0.017 0.000 0.089 0.000 0.000 0.135 0.263 0.105 0.221 0.000 0.000 6.449 - 10.45 51.08 1996 0.000 0.001 0.090 0.933 0.280 0.025 4.211 0.227 0.000 0.000 0.008 0.006 0.010 0.000 0.089 0.000 0.000 0.137 0.273 0.109 0.234 0.000 0.000 6.630 - 10.45 51.08 1997 0.000 0.001 0.093 1.034 0.282 0.024 4.295 0.238 0.000 0.000 0.008 0.006 0.010 0.000 0.085 0.000 0.000 0.139 0.279 0.110 0.248 0.000 0.000 6.854 - 10.45 51.08 1998 0.000 0.001 0.095 1.125 0.288 0.022 4.378 0.250 0.000 0.000 0.007 0.006 0.009 0.000 0.075 0.000 0.000 0.141 0.284 0.112 0.260 0.000 0.000 7.051 - 10.45 51.08 1999 0.000 0.001 0.095 1.237 0.288 0.020 4.472 0.265 0.000 0.000 0.007 0.006 0.009 0.000 0.068 0.000 0.000 0.143 0.292 0.111 0.275 0.000 0.000 7.289 - 10.45 51.08 2000 0.000 0.000 0.094 1.330 0.296 0.012 4.550 0.272 0.000 0.000 0.007 0.006 0.002 0.000 0.060 0.000 0.000 0.144 0.294 0.109 0.284 0.000 0.000 7.459 - 10.45 51.08 2001 0.000 0.000 0.090 1.425 0.300 0.009 4.634 0.283 0.000 0.000 0.008 0.005 0.002 0.000 0.057 0.000 0.000 0.146 0.292 0.107 0.292 0.000 0.000 7.649 - 10.45 51.08 2002 0.000 0.000 0.076 1.515 0.305 0.007 4.702 0.285 0.000 0.000 0.008 0.005 0.002 0.000 0.057 0.000 0.000 0.147 0.289 0.106 0.299 0.000 0.000 7.802 - 10.45 51.08 2003 0.000 0.000 0.071 1.595 0.299 0.005 4.777 0.279 0.000 0.000 0.008 0.005 0.002 0.000 0.050 0.000 0.000 0.148 0.287 0.094 0.300 0.000 0.000 7.920 - 10.45 51.08 2004 0.000 0.000 0.067 1.687 0.307 0.005 4.886 0.291 0.000 0.000 0.008 0.005 0.002 0.000 0.040 0.000 0.000 0.122 0.291 0.090 0.313 0.000 0.000 8.112 - 10.45 51.08 2005 0.000 0.000 0.060 1.767 0.308 0.005 4.984 0.298 0.000 0.000 0.009 0.002 0.002 0.000 0.036 0.000 0.000 0.095 0.288 0.088 0.313 0.000 0.000 8.256 - 10.45 51.08 2006 0.000 0.000 0.050 1.855 0.316 0.005 5.069 0.282 0.000 0.000 0.009 0.002 0.001 0.000 0.028 0.000 0.000 0.095 0.285 0.087 0.326 0.000 0.000 8.410 - 10.45 51.08 2007 0.000 0.000 0.050 1.995 0.325 0.005 5.162 0.296 0.000 0.000 0.010 0.002 0.001 0.000 0.028 0.000 0.000 0.097 0.289 0.081 0.330 0.000 0.000 8.671 - 10.45 51.08 2008 0.000 0.000 0.039 2.105 0.310 0.004 5.245 0.301 0.000 0.000 0.010 0.002 0.001 0.000 0.022 0.000 0.000 0.098 0.284 0.079 0.331 0.000 0.000 8.831 - 10.45 51.08 2009 0.000 0.000 0.037 2.214 0.308 0.004 5.330 0.310 0.000 0.000 0.011 0.002 0.001 0.000 0.022 0.000 0.000 0.098 0.287 0.073 0.336 0.000 0.000 9.033 - 10.45 51.08 2010 0.000 0.000 0.034 2.340 0.296 0.002 5.404 0.311 0.000 0.000 0.011 0.002 0.001 0.000 0.020 0.000 0.000 0.099 0.285 0.069 0.346 0.000 0.000 9.218 - 10.45 51.08 2011 0.000 0.000 0.035 2.474 0.298 0.002 5.509 0.322 0.000 0.000 0.011 0.002 0.001 0.000 0.015 0.000 0.000 0.100 0.285 0.066 0.356 0.000 0.000 9.477 - 10.45 51.08 2012 0.000 0.000 0.027 2.542 0.294 0.002 5.592 0.320 0.000 0.000 0.012 0.002 0.001 0.000 0.015 0.000 0.000 0.098 0.283 0.060 0.359 0.000 0.000 9.606 diff --git a/rLPJGUESS/inst/extdata/outputsForTests/run_npatch/outDirectory/cpool.out b/rLPJGUESS/inst/extdata/outputsForTests/run_npatch/outDirectory/cpool.out deleted file mode 100644 index e28fa17..0000000 --- a/rLPJGUESS/inst/extdata/outputsForTests/run_npatch/outDirectory/cpool.out +++ /dev/null @@ -1,63 +0,0 @@ - Lon Lat Year VegC LitterC SoilC Total - 10.45 51.08 1951 8.993 6.382 11.968 27.344 - 10.45 51.08 1952 9.107 6.241 11.970 27.319 - 10.45 51.08 1953 8.917 6.399 11.957 27.274 - 10.45 51.08 1954 9.049 6.255 11.962 27.266 - 10.45 51.08 1955 8.934 6.401 11.971 27.306 - 10.45 51.08 1956 9.100 6.298 11.986 27.384 - 10.45 51.08 1957 9.246 6.176 11.984 27.407 - 10.45 51.08 1958 7.643 7.809 11.984 27.436 - 10.45 51.08 1959 7.800 7.512 11.986 27.298 - 10.45 51.08 1960 7.985 7.337 11.994 27.316 - 10.45 51.08 1961 8.169 7.117 11.994 27.280 - 10.45 51.08 1962 8.325 6.923 12.001 27.248 - 10.45 51.08 1963 8.490 6.782 12.004 27.276 - 10.45 51.08 1964 8.647 6.590 12.000 27.237 - 10.45 51.08 1965 8.412 6.906 12.005 27.323 - 10.45 51.08 1966 8.640 6.762 12.011 27.413 - 10.45 51.08 1967 6.233 9.191 12.007 27.431 - 10.45 51.08 1968 6.362 8.940 12.030 27.332 - 10.45 51.08 1969 6.604 8.697 12.044 27.345 - 10.45 51.08 1970 6.769 8.507 12.058 27.334 - 10.45 51.08 1971 6.900 8.201 12.075 27.177 - 10.45 51.08 1972 7.042 8.113 12.102 27.256 - 10.45 51.08 1973 7.140 7.880 12.114 27.135 - 10.45 51.08 1974 7.359 7.732 12.126 27.217 - 10.45 51.08 1975 7.493 7.534 12.127 27.154 - 10.45 51.08 1976 6.057 8.816 12.124 26.997 - 10.45 51.08 1977 6.171 8.602 12.162 26.935 - 10.45 51.08 1978 6.396 8.362 12.178 26.936 - 10.45 51.08 1979 6.511 8.166 12.183 26.860 - 10.45 51.08 1980 5.758 8.807 12.203 26.768 - 10.45 51.08 1981 5.976 8.569 12.230 26.774 - 10.45 51.08 1982 6.101 8.166 12.231 26.497 - 10.45 51.08 1983 5.765 8.431 12.231 26.426 - 10.45 51.08 1984 5.921 8.300 12.252 26.473 - 10.45 51.08 1985 6.158 7.985 12.260 26.403 - 10.45 51.08 1986 6.366 7.774 12.265 26.405 - 10.45 51.08 1987 6.550 7.681 12.285 26.516 - 10.45 51.08 1988 5.243 7.426 12.282 24.951 - 10.45 51.08 1989 5.323 7.143 12.284 24.750 - 10.45 51.08 1990 5.587 6.905 12.269 24.761 - 10.45 51.08 1991 5.655 6.758 12.248 24.661 - 10.45 51.08 1992 5.772 6.552 12.242 24.565 - 10.45 51.08 1993 5.993 6.422 12.244 24.659 - 10.45 51.08 1994 6.221 6.245 12.231 24.696 - 10.45 51.08 1995 6.449 6.107 12.225 24.781 - 10.45 51.08 1996 6.630 6.053 12.231 24.915 - 10.45 51.08 1997 6.854 5.873 12.221 24.947 - 10.45 51.08 1998 7.051 5.724 12.208 24.982 - 10.45 51.08 1999 7.289 5.571 12.190 25.051 - 10.45 51.08 2000 7.459 5.424 12.169 25.051 - 10.45 51.08 2001 7.649 5.305 12.156 25.110 - 10.45 51.08 2002 7.802 5.254 12.155 25.212 - 10.45 51.08 2003 7.920 5.091 12.128 25.139 - 10.45 51.08 2004 8.112 4.998 12.111 25.222 - 10.45 51.08 2005 8.256 4.944 12.091 25.290 - 10.45 51.08 2006 8.410 4.863 12.069 25.342 - 10.45 51.08 2007 8.671 4.767 12.059 25.498 - 10.45 51.08 2008 8.831 4.655 12.035 25.521 - 10.45 51.08 2009 9.033 4.546 12.018 25.598 - 10.45 51.08 2010 9.218 4.497 12.015 25.731 - 10.45 51.08 2011 9.477 4.345 11.989 25.810 - 10.45 51.08 2012 9.606 4.288 11.964 25.857 diff --git a/rLPJGUESS/inst/extdata/outputsForTests/run_npatch/outDirectory/cton_leaf.out b/rLPJGUESS/inst/extdata/outputsForTests/run_npatch/outDirectory/cton_leaf.out deleted file mode 100644 index 58178c4..0000000 --- a/rLPJGUESS/inst/extdata/outputsForTests/run_npatch/outDirectory/cton_leaf.out +++ /dev/null @@ -1,63 +0,0 @@ - Lon Lat Year Abi_alb BES Bet_pen Bet_pub Car_bet Cor_ave Fag_syl Fra_exc Jun_oxy MRS Pic_abi Pic_sit Pin_syl Pin_hal Pop_tre Que_coc Que_ile Que_pub Que_rob Til_cor Ulm_gla C3_gr C4_gr Total - 10.45 51.08 1951 0.0 37.3 23.6 23.6 23.6 23.6 23.6 23.6 0.0 0.0 56.4 60.8 50.7 0.0 23.6 0.0 0.0 23.6 23.6 23.6 23.6 0.0 0.0 24.0 - 10.45 51.08 1952 0.0 37.3 23.6 23.6 23.6 23.6 23.6 23.6 0.0 0.0 56.4 60.8 50.7 0.0 23.6 0.0 0.0 23.6 23.6 23.6 23.6 0.0 0.0 23.9 - 10.45 51.08 1953 0.0 37.3 23.6 23.6 23.6 23.6 23.6 23.6 0.0 0.0 56.4 60.8 50.7 0.0 23.6 0.0 0.0 23.6 23.6 23.6 23.6 0.0 0.0 23.9 - 10.45 51.08 1954 0.0 37.3 23.6 23.6 23.6 23.6 23.6 23.6 0.0 0.0 56.4 60.8 50.7 0.0 23.6 0.0 0.0 23.6 23.6 23.6 23.6 0.0 0.0 23.8 - 10.45 51.08 1955 0.0 37.3 23.6 23.6 23.6 23.6 23.6 23.6 0.0 0.0 56.4 60.8 50.7 0.0 23.6 0.0 0.0 23.6 23.6 23.6 23.6 0.0 0.0 23.8 - 10.45 51.08 1956 0.0 37.3 23.6 23.6 23.6 23.6 23.6 23.6 0.0 0.0 56.4 60.8 50.7 0.0 23.6 0.0 0.0 23.6 23.6 23.6 23.6 0.0 0.0 23.8 - 10.45 51.08 1957 0.0 0.0 23.6 23.6 23.6 23.6 23.6 23.6 0.0 0.0 56.4 60.8 50.7 0.0 23.6 0.0 0.0 23.6 23.6 23.6 23.6 0.0 0.0 23.7 - 10.45 51.08 1958 0.0 0.0 23.6 23.6 23.6 23.6 23.6 23.6 0.0 0.0 56.4 60.8 50.7 0.0 23.6 0.0 0.0 23.6 23.6 23.6 23.6 0.0 0.0 23.7 - 10.45 51.08 1959 0.0 0.0 23.6 23.6 23.6 23.6 23.6 23.6 0.0 0.0 56.4 60.8 50.7 0.0 23.6 0.0 0.0 23.6 23.6 23.6 23.6 0.0 0.0 23.7 - 10.45 51.08 1960 0.0 0.0 23.6 23.6 23.6 23.6 23.6 23.6 0.0 0.0 56.4 60.8 50.7 0.0 23.6 0.0 0.0 23.6 23.6 23.6 23.6 23.6 0.0 23.7 - 10.45 51.08 1961 0.0 0.0 23.6 23.6 23.6 23.6 23.6 23.6 0.0 0.0 56.4 60.8 50.7 0.0 23.6 0.0 0.0 23.6 23.6 23.6 23.6 23.6 0.0 23.7 - 10.45 51.08 1962 0.0 0.0 23.6 23.6 23.6 23.6 23.6 23.6 0.0 0.0 56.4 60.8 50.7 0.0 23.6 0.0 0.0 23.6 23.6 23.6 23.6 23.6 0.0 23.7 - 10.45 51.08 1963 0.0 0.0 23.6 23.6 23.6 23.6 23.6 23.6 0.0 0.0 56.4 60.8 50.7 0.0 23.6 0.0 0.0 23.6 23.6 23.6 23.6 23.6 0.0 23.7 - 10.45 51.08 1964 0.0 0.0 23.6 23.6 23.6 23.6 23.6 23.6 0.0 0.0 56.4 60.8 50.7 0.0 23.6 0.0 0.0 23.6 23.6 23.6 23.6 23.6 0.0 23.7 - 10.45 51.08 1965 0.0 0.0 23.6 23.6 23.6 23.6 23.6 23.6 0.0 0.0 56.4 60.8 50.7 0.0 23.6 0.0 0.0 23.6 23.6 23.6 23.6 23.6 0.0 23.7 - 10.45 51.08 1966 0.0 0.0 23.6 23.6 23.6 23.6 23.6 23.6 0.0 0.0 56.4 60.8 50.7 0.0 23.6 0.0 0.0 23.6 23.6 23.6 23.6 23.6 0.0 23.7 - 10.45 51.08 1967 0.0 0.0 23.6 23.6 23.6 23.6 23.6 23.6 0.0 0.0 56.4 60.8 0.0 0.0 23.6 0.0 0.0 23.6 23.6 23.6 23.6 23.6 0.0 23.6 - 10.45 51.08 1968 0.0 0.0 23.6 23.6 23.6 23.6 23.6 23.6 0.0 0.0 56.4 60.8 0.0 0.0 23.6 0.0 0.0 23.6 23.6 23.6 23.6 23.6 0.0 23.6 - 10.45 51.08 1969 0.0 37.3 23.6 23.6 23.6 23.6 23.6 23.6 0.0 0.0 56.4 60.8 50.7 0.0 23.6 0.0 0.0 23.6 23.6 23.6 23.6 23.6 0.0 23.8 - 10.45 51.08 1970 0.0 37.3 23.6 23.6 23.6 23.6 23.6 23.6 0.0 0.0 56.4 60.8 50.7 0.0 23.6 0.0 0.0 23.6 23.6 23.6 23.6 23.6 0.0 23.9 - 10.45 51.08 1971 0.0 37.3 23.6 23.6 23.6 23.6 23.6 23.6 0.0 0.0 56.4 60.8 50.7 0.0 23.6 0.0 0.0 23.6 23.6 23.6 23.6 23.6 0.0 24.0 - 10.45 51.08 1972 0.0 37.3 23.6 23.6 23.6 23.6 23.6 23.6 0.0 0.0 56.4 60.8 50.7 0.0 23.6 0.0 0.0 23.6 23.6 23.6 23.6 23.6 0.0 24.1 - 10.45 51.08 1973 0.0 37.3 23.6 23.6 23.6 23.6 23.6 23.6 0.0 0.0 56.4 60.8 50.7 0.0 23.6 0.0 0.0 23.6 23.6 23.6 23.6 23.6 0.0 24.2 - 10.45 51.08 1974 0.0 37.3 23.6 23.6 23.6 23.6 23.6 23.6 0.0 0.0 56.4 60.8 50.7 0.0 23.6 0.0 0.0 23.6 23.6 23.6 23.6 0.0 0.0 24.2 - 10.45 51.08 1975 0.0 37.3 23.6 23.6 23.6 23.6 23.6 23.6 0.0 0.0 56.4 60.8 50.7 0.0 23.6 0.0 0.0 23.6 23.6 23.6 23.6 0.0 0.0 24.2 - 10.45 51.08 1976 0.0 37.3 23.6 23.6 23.6 23.6 23.6 23.6 0.0 0.0 56.4 60.8 50.7 0.0 23.6 0.0 0.0 23.6 23.6 23.6 23.6 0.0 0.0 24.3 - 10.45 51.08 1977 0.0 37.3 23.6 23.6 23.6 23.6 23.6 23.6 0.0 0.0 56.4 60.8 50.7 0.0 23.6 0.0 0.0 23.6 23.6 23.6 23.6 0.0 0.0 24.2 - 10.45 51.08 1978 0.0 37.3 23.6 23.6 23.6 23.6 23.6 23.6 0.0 0.0 56.4 60.8 50.7 0.0 23.6 0.0 0.0 23.6 23.6 23.6 23.6 23.6 0.0 24.2 - 10.45 51.08 1979 0.0 37.3 23.6 23.6 23.6 23.6 23.6 23.6 0.0 0.0 56.4 60.8 50.7 0.0 23.6 0.0 0.0 23.6 23.6 23.6 23.6 23.6 0.0 24.3 - 10.45 51.08 1980 0.0 37.3 23.6 23.6 23.6 23.6 23.6 23.6 0.0 0.0 56.4 60.8 50.7 0.0 23.6 0.0 0.0 23.6 23.6 23.6 23.6 23.6 0.0 24.4 - 10.45 51.08 1981 0.0 37.3 23.6 23.6 23.6 23.6 23.6 23.6 0.0 0.0 56.4 60.8 50.7 0.0 23.6 0.0 0.0 23.6 23.6 23.6 23.6 23.6 0.0 24.4 - 10.45 51.08 1982 0.0 37.3 23.6 23.6 23.6 23.6 23.6 23.6 0.0 0.0 56.4 60.8 50.7 0.0 23.6 0.0 0.0 23.6 23.6 23.6 23.6 23.6 0.0 24.4 - 10.45 51.08 1983 0.0 37.3 23.6 23.6 23.6 23.6 23.6 23.6 0.0 0.0 56.4 60.8 50.7 0.0 23.6 0.0 0.0 23.6 23.6 23.6 23.6 23.6 0.0 24.3 - 10.45 51.08 1984 0.0 37.3 23.6 23.6 23.6 23.6 23.6 23.6 0.0 0.0 56.4 60.8 50.7 0.0 23.6 0.0 0.0 23.6 23.6 23.6 23.6 23.6 0.0 24.3 - 10.45 51.08 1985 0.0 37.3 23.6 23.6 23.6 23.6 23.6 23.6 0.0 0.0 56.4 60.8 50.7 0.0 23.6 0.0 0.0 23.6 23.6 23.6 23.6 23.6 0.0 24.2 - 10.45 51.08 1986 0.0 37.3 23.6 23.6 23.6 23.6 23.6 23.6 0.0 0.0 56.4 60.8 50.7 0.0 23.6 0.0 0.0 23.6 23.6 23.6 23.6 23.6 0.0 24.2 - 10.45 51.08 1987 0.0 37.3 23.6 23.6 23.6 23.6 23.6 23.6 0.0 0.0 56.4 60.8 50.7 0.0 23.6 0.0 0.0 23.6 23.6 23.6 23.6 23.6 0.0 24.1 - 10.45 51.08 1988 0.0 37.3 23.6 23.6 23.6 23.6 23.6 23.6 0.0 0.0 56.4 60.8 50.7 0.0 23.6 0.0 0.0 23.6 23.6 23.6 23.6 23.6 0.0 24.2 - 10.45 51.08 1989 0.0 37.3 23.6 23.6 23.6 23.6 23.6 23.6 0.0 0.0 56.4 60.8 50.7 0.0 23.6 0.0 0.0 23.6 23.6 23.6 23.6 23.6 0.0 24.1 - 10.45 51.08 1990 0.0 37.3 23.6 23.6 23.6 23.6 23.6 23.6 0.0 0.0 56.4 60.8 50.7 0.0 23.6 0.0 0.0 23.6 23.6 23.6 23.6 23.6 0.0 24.0 - 10.45 51.08 1991 0.0 37.3 23.6 23.6 23.6 23.6 23.6 23.6 0.0 0.0 56.4 60.8 50.7 0.0 23.6 0.0 0.0 23.6 23.6 23.6 23.6 23.6 0.0 23.9 - 10.45 51.08 1992 0.0 37.3 23.6 23.6 23.6 23.6 23.6 23.6 0.0 0.0 56.4 60.8 50.7 0.0 23.6 0.0 0.0 23.6 23.6 23.6 23.6 23.6 0.0 23.9 - 10.45 51.08 1993 0.0 37.3 23.6 23.6 23.6 23.6 23.6 23.6 0.0 0.0 56.4 60.8 50.7 0.0 23.6 0.0 0.0 23.6 23.6 23.6 23.6 23.6 0.0 23.9 - 10.45 51.08 1994 0.0 37.3 23.6 23.6 23.6 23.6 23.6 23.6 0.0 0.0 56.4 60.8 50.7 0.0 23.6 0.0 0.0 23.6 23.6 23.6 23.6 23.6 0.0 23.9 - 10.45 51.08 1995 0.0 37.3 23.6 23.6 23.6 23.6 23.6 23.6 0.0 0.0 56.4 60.8 50.7 0.0 23.6 0.0 0.0 23.6 23.6 23.6 23.6 23.6 0.0 23.9 - 10.45 51.08 1996 0.0 37.3 23.6 23.6 23.6 23.6 23.6 23.6 0.0 0.0 56.4 60.8 50.7 0.0 23.6 0.0 0.0 23.6 23.6 23.6 23.6 23.6 0.0 23.8 - 10.45 51.08 1997 0.0 37.3 23.6 23.6 23.6 23.6 23.6 23.6 0.0 0.0 56.4 60.8 50.7 0.0 23.6 0.0 0.0 23.6 23.6 23.6 23.6 23.6 0.0 23.8 - 10.45 51.08 1998 0.0 37.3 23.6 23.6 23.6 23.6 23.6 23.6 0.0 0.0 56.4 60.8 50.7 0.0 23.6 0.0 0.0 23.6 23.6 23.6 23.6 23.6 0.0 23.8 - 10.45 51.08 1999 0.0 37.3 23.6 23.6 23.6 23.6 23.6 23.6 0.0 0.0 56.4 60.8 50.7 0.0 23.6 0.0 0.0 23.6 23.6 23.6 23.6 0.0 0.0 23.8 - 10.45 51.08 2000 0.0 37.3 23.6 23.6 23.6 23.6 23.6 23.6 0.0 0.0 56.4 60.8 50.7 0.0 23.6 0.0 0.0 23.6 23.6 23.6 23.6 0.0 0.0 23.8 - 10.45 51.08 2001 0.0 37.3 23.6 23.6 23.6 23.6 23.6 23.6 0.0 0.0 56.4 60.8 50.7 0.0 23.6 0.0 0.0 23.6 23.6 23.6 23.6 0.0 0.0 23.8 - 10.45 51.08 2002 0.0 37.3 23.6 23.6 23.6 23.6 23.6 23.6 0.0 0.0 56.4 60.8 50.7 0.0 23.6 0.0 0.0 23.6 23.6 23.6 23.6 0.0 0.0 23.8 - 10.45 51.08 2003 0.0 37.3 23.6 23.6 23.6 23.6 23.6 23.6 0.0 0.0 56.4 60.8 50.7 0.0 23.6 0.0 0.0 23.6 23.6 23.6 23.6 0.0 0.0 23.8 - 10.45 51.08 2004 0.0 37.3 23.6 23.6 23.6 23.6 23.6 23.6 0.0 0.0 56.4 60.8 50.7 0.0 23.6 0.0 0.0 23.6 23.6 23.6 23.6 0.0 0.0 23.8 - 10.45 51.08 2005 0.0 37.3 23.6 23.6 23.6 23.6 23.6 23.6 0.0 0.0 56.4 60.8 50.7 0.0 23.6 0.0 0.0 23.6 23.6 23.6 23.6 0.0 0.0 23.8 - 10.45 51.08 2006 0.0 37.3 23.6 23.6 23.6 23.6 23.6 23.6 0.0 0.0 56.4 60.8 50.7 0.0 23.6 0.0 0.0 23.6 23.6 23.6 23.6 0.0 0.0 23.8 - 10.45 51.08 2007 0.0 37.3 23.6 23.6 23.6 23.6 23.6 23.6 0.0 0.0 56.4 60.8 50.7 0.0 23.6 0.0 0.0 23.6 23.6 23.6 23.6 0.0 0.0 23.8 - 10.45 51.08 2008 0.0 37.3 23.6 23.6 23.6 23.6 23.6 23.6 0.0 0.0 56.4 60.8 50.7 0.0 23.6 0.0 0.0 23.6 23.6 23.6 23.6 0.0 0.0 23.8 - 10.45 51.08 2009 0.0 37.3 23.6 23.6 23.6 23.6 23.6 23.6 0.0 0.0 56.4 60.8 50.7 0.0 23.6 0.0 0.0 23.6 23.6 23.6 23.6 0.0 0.0 23.8 - 10.45 51.08 2010 0.0 37.3 23.6 23.6 23.6 23.6 23.6 23.6 0.0 0.0 56.4 60.8 50.7 0.0 23.6 0.0 0.0 23.6 23.6 23.6 23.6 0.0 0.0 23.8 - 10.45 51.08 2011 0.0 37.3 23.6 23.6 23.6 23.6 23.6 23.6 0.0 0.0 56.4 60.8 50.7 0.0 23.6 0.0 0.0 23.6 23.6 23.6 23.6 0.0 0.0 23.8 - 10.45 51.08 2012 0.0 37.3 23.6 23.6 23.6 23.6 23.6 23.6 0.0 0.0 56.4 60.8 50.7 0.0 23.6 0.0 0.0 23.6 23.6 23.6 23.6 0.0 0.0 23.8 diff --git a/rLPJGUESS/inst/extdata/outputsForTests/run_npatch/outDirectory/dens.out b/rLPJGUESS/inst/extdata/outputsForTests/run_npatch/outDirectory/dens.out deleted file mode 100644 index e4319cf..0000000 --- a/rLPJGUESS/inst/extdata/outputsForTests/run_npatch/outDirectory/dens.out +++ /dev/null @@ -1,63 +0,0 @@ - Lon Lat Year Abi_alb BES Bet_pen Bet_pub Car_bet Cor_ave Fag_syl Fra_exc Jun_oxy MRS Pic_abi Pic_sit Pin_syl Pin_hal Pop_tre Que_coc Que_ile Que_pub Que_rob Til_cor Ulm_gla C3_gr C4_gr Total - 10.45 51.08 1951 0.0000 0.0048 0.0142 0.0156 0.0118 0.0072 0.0142 0.0146 0.0000 0.0000 0.0022 0.0070 0.0064 0.0000 0.0096 0.0000 0.0000 0.0016 0.0116 0.0116 0.0108 0.0000 0.0000 0.1432 - 10.45 51.08 1952 0.0000 0.0032 0.0128 0.0152 0.0118 0.0066 0.0140 0.0144 0.0000 0.0000 0.0022 0.0068 0.0064 0.0000 0.0088 0.0000 0.0000 0.0016 0.0114 0.0116 0.0108 0.0000 0.0000 0.1376 - 10.45 51.08 1953 0.0000 0.0028 0.0118 0.0148 0.0116 0.0066 0.0140 0.0136 0.0000 0.0000 0.0022 0.0066 0.0064 0.0000 0.0086 0.0000 0.0000 0.0016 0.0112 0.0112 0.0106 0.0000 0.0000 0.1336 - 10.45 51.08 1954 0.0000 0.0022 0.0112 0.0146 0.0114 0.0060 0.0140 0.0132 0.0000 0.0000 0.0022 0.0066 0.0064 0.0000 0.0080 0.0000 0.0000 0.0016 0.0112 0.0108 0.0106 0.0000 0.0000 0.1300 - 10.45 51.08 1955 0.0000 0.0014 0.0104 0.0144 0.0114 0.0044 0.0136 0.0130 0.0000 0.0000 0.0022 0.0066 0.0064 0.0000 0.0074 0.0000 0.0000 0.0016 0.0110 0.0106 0.0104 0.0000 0.0000 0.1248 - 10.45 51.08 1956 0.0000 0.0010 0.0098 0.0144 0.0112 0.0040 0.0132 0.0128 0.0000 0.0000 0.0022 0.0062 0.0064 0.0000 0.0070 0.0000 0.0000 0.0016 0.0108 0.0106 0.0098 0.0000 0.0000 0.1210 - 10.45 51.08 1957 0.0000 0.0000 0.0090 0.0138 0.0112 0.0036 0.0132 0.0122 0.0000 0.0000 0.0022 0.0062 0.0064 0.0000 0.0060 0.0000 0.0000 0.0014 0.0104 0.0102 0.0096 0.0000 0.0000 0.1154 - 10.45 51.08 1958 0.0000 0.0000 0.0080 0.0136 0.0110 0.0034 0.0126 0.0118 0.0000 0.0000 0.0022 0.0002 0.0058 0.0000 0.0050 0.0000 0.0000 0.0014 0.0104 0.0100 0.0092 0.0000 0.0000 0.1046 - 10.45 51.08 1959 0.0000 0.0000 0.0066 0.0136 0.0108 0.0028 0.0124 0.0114 0.0000 0.0000 0.0022 0.0002 0.0058 0.0000 0.0042 0.0000 0.0000 0.0014 0.0104 0.0098 0.0092 0.0000 0.0000 0.1008 - 10.45 51.08 1960 0.0000 0.0000 0.0064 0.0134 0.0108 0.0028 0.0122 0.0112 0.0000 0.0000 0.0004 0.0002 0.0058 0.0000 0.0040 0.0000 0.0000 0.0012 0.0102 0.0096 0.0088 0.0000 0.0000 0.0970 - 10.45 51.08 1961 0.0000 0.0000 0.0064 0.0132 0.0102 0.0024 0.0124 0.0110 0.0000 0.0000 0.0004 0.0002 0.0058 0.0000 0.0034 0.0000 0.0000 0.0012 0.0102 0.0092 0.0088 0.0000 0.0000 0.0948 - 10.45 51.08 1962 0.0000 0.0000 0.0060 0.0132 0.0098 0.0018 0.0124 0.0110 0.0000 0.0000 0.0004 0.0002 0.0058 0.0000 0.0032 0.0000 0.0000 0.0012 0.0102 0.0090 0.0084 0.0000 0.0000 0.0926 - 10.45 51.08 1963 0.0000 0.0000 0.0054 0.0128 0.0092 0.0014 0.0100 0.0106 0.0000 0.0000 0.0006 0.0002 0.0004 0.0000 0.0024 0.0000 0.0000 0.0012 0.0100 0.0088 0.0084 0.0000 0.0000 0.0814 - 10.45 51.08 1964 0.0000 0.0000 0.0048 0.0124 0.0090 0.0014 0.0100 0.0104 0.0000 0.0000 0.0006 0.0002 0.0004 0.0000 0.0022 0.0000 0.0000 0.0012 0.0100 0.0084 0.0084 0.0000 0.0000 0.0794 - 10.45 51.08 1965 0.0000 0.0000 0.0046 0.0120 0.0088 0.0010 0.0100 0.0104 0.0000 0.0000 0.0006 0.0002 0.0004 0.0000 0.0022 0.0000 0.0000 0.0012 0.0096 0.0082 0.0084 0.0000 0.0000 0.0776 - 10.45 51.08 1966 0.0000 0.0000 0.0042 0.0116 0.0088 0.0008 0.0100 0.0100 0.0000 0.0000 0.0008 0.0002 0.0004 0.0000 0.0022 0.0000 0.0000 0.0012 0.0094 0.0078 0.0084 0.0000 0.0000 0.0758 - 10.45 51.08 1967 0.0000 0.0000 0.0042 0.0114 0.0084 0.0006 0.0074 0.0098 0.0000 0.0000 0.0002 0.0000 0.0000 0.0000 0.0018 0.0000 0.0000 0.0012 0.0090 0.0078 0.0078 0.0000 0.0000 0.0696 - 10.45 51.08 1968 0.0000 0.0000 0.0042 0.0110 0.0082 0.0006 0.0074 0.0098 0.0000 0.0000 0.0002 0.0000 0.0000 0.0000 0.0014 0.0000 0.0000 0.0012 0.0090 0.0076 0.0078 0.0000 0.0000 0.0684 - 10.45 51.08 1969 0.0000 0.0062 0.0036 0.0110 0.0082 0.0004 0.0074 0.0096 0.0000 0.0000 0.0002 0.0000 0.0000 0.0000 0.0012 0.0000 0.0000 0.0012 0.0088 0.0076 0.0076 0.0000 0.0000 0.0730 - 10.45 51.08 1970 0.0000 0.0062 0.0028 0.0196 0.0082 0.0000 0.0074 0.0096 0.0000 0.0000 0.0002 0.0000 0.0000 0.0000 0.0006 0.0000 0.0000 0.0012 0.0088 0.0074 0.0074 0.0000 0.0000 0.0794 - 10.45 51.08 1971 0.0000 0.0062 0.0078 0.0192 0.0150 0.0076 0.0094 0.0136 0.0000 0.0000 0.0002 0.0000 0.0000 0.0000 0.0104 0.0000 0.0000 0.0012 0.0144 0.0132 0.0122 0.0000 0.0000 0.1304 - 10.45 51.08 1972 0.0000 0.0062 0.0078 0.0220 0.0152 0.0076 0.0130 0.0140 0.0000 0.0000 0.0032 0.0000 0.0058 0.0000 0.0106 0.0000 0.0000 0.0012 0.0144 0.0124 0.0136 0.0000 0.0000 0.1470 - 10.45 51.08 1973 0.0000 0.0060 0.0074 0.0218 0.0148 0.0078 0.0130 0.0136 0.0000 0.0000 0.0032 0.0052 0.0058 0.0000 0.0106 0.0000 0.0000 0.0012 0.0140 0.0118 0.0134 0.0000 0.0000 0.1496 - 10.45 51.08 1974 0.0000 0.0058 0.0070 0.0216 0.0142 0.0078 0.0130 0.0136 0.0000 0.0000 0.0034 0.0052 0.0058 0.0000 0.0104 0.0000 0.0000 0.0012 0.0138 0.0118 0.0134 0.0000 0.0000 0.1480 - 10.45 51.08 1975 0.0000 0.0056 0.0070 0.0218 0.0140 0.0078 0.0130 0.0132 0.0000 0.0000 0.0034 0.0052 0.0058 0.0000 0.0102 0.0000 0.0000 0.0012 0.0138 0.0118 0.0126 0.0000 0.0000 0.1464 - 10.45 51.08 1976 0.0000 0.0056 0.0066 0.0168 0.0118 0.0078 0.0106 0.0106 0.0000 0.0000 0.0034 0.0052 0.0058 0.0000 0.0100 0.0000 0.0000 0.0012 0.0112 0.0104 0.0102 0.0000 0.0000 0.1272 - 10.45 51.08 1977 0.0000 0.0050 0.0066 0.0164 0.0116 0.0078 0.0106 0.0106 0.0000 0.0000 0.0034 0.0052 0.0058 0.0000 0.0098 0.0000 0.0000 0.0012 0.0106 0.0100 0.0102 0.0000 0.0000 0.1248 - 10.45 51.08 1978 0.0000 0.0118 0.0066 0.0162 0.0116 0.0076 0.0106 0.0102 0.0000 0.0000 0.0034 0.0052 0.0058 0.0000 0.0092 0.0000 0.0000 0.0012 0.0106 0.0096 0.0098 0.0000 0.0000 0.1294 - 10.45 51.08 1979 0.0000 0.0112 0.0062 0.0224 0.0112 0.0074 0.0106 0.0098 0.0000 0.0000 0.0036 0.0052 0.0058 0.0000 0.0086 0.0000 0.0000 0.0012 0.0104 0.0088 0.0094 0.0000 0.0000 0.1318 - 10.45 51.08 1980 0.0000 0.0100 0.0156 0.0214 0.0206 0.0140 0.0132 0.0160 0.0000 0.0000 0.0036 0.0052 0.0058 0.0000 0.0172 0.0000 0.0000 0.0012 0.0158 0.0182 0.0164 0.0000 0.0000 0.1942 - 10.45 51.08 1981 0.0000 0.0074 0.0148 0.0218 0.0202 0.0140 0.0134 0.0158 0.0000 0.0000 0.0058 0.0052 0.0124 0.0000 0.0172 0.0000 0.0000 0.0012 0.0158 0.0182 0.0162 0.0000 0.0000 0.1994 - 10.45 51.08 1982 0.0000 0.0074 0.0148 0.0216 0.0202 0.0138 0.0164 0.0156 0.0000 0.0000 0.0058 0.0090 0.0124 0.0000 0.0166 0.0000 0.0000 0.0012 0.0162 0.0182 0.0164 0.0000 0.0000 0.2056 - 10.45 51.08 1983 0.0000 0.0070 0.0138 0.0214 0.0196 0.0132 0.0162 0.0154 0.0000 0.0000 0.0058 0.0090 0.0124 0.0000 0.0162 0.0000 0.0000 0.0012 0.0160 0.0174 0.0160 0.0000 0.0000 0.2006 - 10.45 51.08 1984 0.0000 0.0070 0.0138 0.0214 0.0194 0.0128 0.0162 0.0150 0.0000 0.0000 0.0058 0.0090 0.0124 0.0000 0.0158 0.0000 0.0000 0.0012 0.0158 0.0170 0.0156 0.0000 0.0000 0.1982 - 10.45 51.08 1985 0.0000 0.0062 0.0136 0.0212 0.0194 0.0118 0.0162 0.0150 0.0000 0.0000 0.0060 0.0090 0.0122 0.0000 0.0152 0.0000 0.0000 0.0012 0.0158 0.0168 0.0156 0.0000 0.0000 0.1952 - 10.45 51.08 1986 0.0000 0.0056 0.0134 0.0210 0.0194 0.0114 0.0162 0.0148 0.0000 0.0000 0.0060 0.0086 0.0122 0.0000 0.0144 0.0000 0.0000 0.0012 0.0154 0.0164 0.0156 0.0000 0.0000 0.1916 - 10.45 51.08 1987 0.0000 0.0040 0.0128 0.0206 0.0194 0.0112 0.0162 0.0148 0.0000 0.0000 0.0060 0.0036 0.0122 0.0000 0.0142 0.0000 0.0000 0.0010 0.0154 0.0158 0.0156 0.0000 0.0000 0.1828 - 10.45 51.08 1988 0.0000 0.0028 0.0118 0.0158 0.0174 0.0106 0.0142 0.0112 0.0000 0.0000 0.0062 0.0034 0.0118 0.0000 0.0126 0.0000 0.0000 0.0010 0.0130 0.0130 0.0128 0.0000 0.0000 0.1576 - 10.45 51.08 1989 0.0000 0.0018 0.0112 0.0150 0.0166 0.0104 0.0142 0.0110 0.0000 0.0000 0.0062 0.0034 0.0118 0.0000 0.0116 0.0000 0.0000 0.0010 0.0126 0.0122 0.0126 0.0000 0.0000 0.1516 - 10.45 51.08 1990 0.0000 0.0014 0.0112 0.0144 0.0162 0.0094 0.0138 0.0108 0.0000 0.0000 0.0062 0.0034 0.0114 0.0000 0.0112 0.0000 0.0000 0.0010 0.0124 0.0122 0.0120 0.0000 0.0000 0.1470 - 10.45 51.08 1991 0.0000 0.0014 0.0102 0.0192 0.0158 0.0086 0.0106 0.0108 0.0000 0.0000 0.0032 0.0034 0.0114 0.0000 0.0110 0.0000 0.0000 0.0010 0.0120 0.0114 0.0120 0.0000 0.0000 0.1420 - 10.45 51.08 1992 0.0000 0.0012 0.0104 0.0188 0.0178 0.0086 0.0148 0.0116 0.0000 0.0000 0.0032 0.0034 0.0114 0.0000 0.0106 0.0000 0.0000 0.0020 0.0148 0.0118 0.0128 0.0000 0.0000 0.1532 - 10.45 51.08 1993 0.0000 0.0006 0.0110 0.0242 0.0190 0.0086 0.0218 0.0142 0.0000 0.0000 0.0040 0.0034 0.0118 0.0000 0.0118 0.0000 0.0000 0.0022 0.0170 0.0142 0.0148 0.0000 0.0000 0.1786 - 10.45 51.08 1994 0.0000 0.0006 0.0108 0.0238 0.0188 0.0084 0.0218 0.0142 0.0000 0.0000 0.0040 0.0004 0.0116 0.0000 0.0116 0.0000 0.0000 0.0022 0.0168 0.0136 0.0148 0.0000 0.0000 0.1734 - 10.45 51.08 1995 0.0000 0.0006 0.0104 0.0230 0.0188 0.0082 0.0218 0.0140 0.0000 0.0000 0.0040 0.0004 0.0122 0.0000 0.0116 0.0000 0.0000 0.0022 0.0168 0.0134 0.0146 0.0000 0.0000 0.1720 - 10.45 51.08 1996 0.0000 0.0006 0.0098 0.0226 0.0188 0.0080 0.0218 0.0140 0.0000 0.0000 0.0040 0.0004 0.0070 0.0000 0.0112 0.0000 0.0000 0.0022 0.0168 0.0134 0.0146 0.0000 0.0000 0.1652 - 10.45 51.08 1997 0.0000 0.0006 0.0096 0.0226 0.0182 0.0074 0.0218 0.0138 0.0000 0.0000 0.0044 0.0004 0.0070 0.0000 0.0106 0.0000 0.0000 0.0022 0.0166 0.0132 0.0146 0.0000 0.0000 0.1630 - 10.45 51.08 1998 0.0000 0.0006 0.0096 0.0222 0.0178 0.0068 0.0192 0.0138 0.0000 0.0000 0.0022 0.0004 0.0070 0.0000 0.0092 0.0000 0.0000 0.0022 0.0164 0.0130 0.0146 0.0000 0.0000 0.1550 - 10.45 51.08 1999 0.0000 0.0006 0.0092 0.0218 0.0170 0.0062 0.0192 0.0138 0.0000 0.0000 0.0022 0.0004 0.0070 0.0000 0.0082 0.0000 0.0000 0.0022 0.0158 0.0124 0.0144 0.0000 0.0000 0.1504 - 10.45 51.08 2000 0.0000 0.0002 0.0090 0.0214 0.0170 0.0036 0.0192 0.0134 0.0000 0.0000 0.0022 0.0004 0.0010 0.0000 0.0074 0.0000 0.0000 0.0022 0.0154 0.0120 0.0142 0.0000 0.0000 0.1386 - 10.45 51.08 2001 0.0000 0.0002 0.0084 0.0206 0.0166 0.0028 0.0192 0.0134 0.0000 0.0000 0.0022 0.0004 0.0010 0.0000 0.0070 0.0000 0.0000 0.0022 0.0150 0.0116 0.0140 0.0000 0.0000 0.1346 - 10.45 51.08 2002 0.0000 0.0002 0.0070 0.0200 0.0164 0.0022 0.0192 0.0128 0.0000 0.0000 0.0022 0.0004 0.0010 0.0000 0.0068 0.0000 0.0000 0.0022 0.0146 0.0112 0.0138 0.0000 0.0000 0.1300 - 10.45 51.08 2003 0.0000 0.0002 0.0066 0.0200 0.0158 0.0014 0.0192 0.0120 0.0000 0.0000 0.0024 0.0004 0.0010 0.0000 0.0060 0.0000 0.0000 0.0022 0.0142 0.0096 0.0134 0.0000 0.0000 0.1244 - 10.45 51.08 2004 0.0000 0.0002 0.0060 0.0194 0.0156 0.0014 0.0190 0.0120 0.0000 0.0000 0.0024 0.0004 0.0010 0.0000 0.0048 0.0000 0.0000 0.0020 0.0140 0.0088 0.0134 0.0000 0.0000 0.1204 - 10.45 51.08 2005 0.0000 0.0002 0.0054 0.0184 0.0152 0.0014 0.0190 0.0116 0.0000 0.0000 0.0026 0.0004 0.0010 0.0000 0.0044 0.0000 0.0000 0.0018 0.0136 0.0084 0.0124 0.0000 0.0000 0.1158 - 10.45 51.08 2006 0.0000 0.0002 0.0042 0.0180 0.0150 0.0014 0.0190 0.0110 0.0000 0.0000 0.0026 0.0004 0.0010 0.0000 0.0032 0.0000 0.0000 0.0018 0.0132 0.0080 0.0124 0.0000 0.0000 0.1114 - 10.45 51.08 2007 0.0000 0.0002 0.0042 0.0176 0.0150 0.0014 0.0192 0.0108 0.0000 0.0000 0.0026 0.0004 0.0010 0.0000 0.0032 0.0000 0.0000 0.0018 0.0128 0.0070 0.0118 0.0000 0.0000 0.1090 - 10.45 51.08 2008 0.0000 0.0002 0.0032 0.0176 0.0146 0.0012 0.0192 0.0104 0.0000 0.0000 0.0026 0.0004 0.0010 0.0000 0.0026 0.0000 0.0000 0.0018 0.0124 0.0066 0.0114 0.0000 0.0000 0.1052 - 10.45 51.08 2009 0.0000 0.0002 0.0030 0.0172 0.0142 0.0012 0.0192 0.0104 0.0000 0.0000 0.0026 0.0004 0.0010 0.0000 0.0026 0.0000 0.0000 0.0018 0.0124 0.0056 0.0110 0.0000 0.0000 0.1028 - 10.45 51.08 2010 0.0000 0.0002 0.0028 0.0166 0.0132 0.0006 0.0190 0.0100 0.0000 0.0000 0.0026 0.0004 0.0010 0.0000 0.0022 0.0000 0.0000 0.0018 0.0120 0.0050 0.0110 0.0000 0.0000 0.0984 - 10.45 51.08 2011 0.0000 0.0002 0.0028 0.0164 0.0128 0.0006 0.0186 0.0100 0.0000 0.0000 0.0026 0.0004 0.0010 0.0000 0.0018 0.0000 0.0000 0.0018 0.0118 0.0046 0.0108 0.0000 0.0000 0.0962 - 10.45 51.08 2012 0.0000 0.0002 0.0022 0.0152 0.0124 0.0006 0.0184 0.0094 0.0000 0.0000 0.0026 0.0004 0.0010 0.0000 0.0016 0.0000 0.0000 0.0016 0.0114 0.0038 0.0106 0.0000 0.0000 0.0914 diff --git a/rLPJGUESS/inst/extdata/outputsForTests/run_npatch/outDirectory/firert.out b/rLPJGUESS/inst/extdata/outputsForTests/run_npatch/outDirectory/firert.out deleted file mode 100644 index fc4946f..0000000 --- a/rLPJGUESS/inst/extdata/outputsForTests/run_npatch/outDirectory/firert.out +++ /dev/null @@ -1,63 +0,0 @@ - Lon Lat Year FireRT - 10.45 51.08 1951 690.2 - 10.45 51.08 1952 170.6 - 10.45 51.08 1953 534.1 - 10.45 51.08 1954 653.9 - 10.45 51.08 1955 703.6 - 10.45 51.08 1956 1000.0 - 10.45 51.08 1957 680.9 - 10.45 51.08 1958 841.0 - 10.45 51.08 1959 144.9 - 10.45 51.08 1960 650.5 - 10.45 51.08 1961 477.2 - 10.45 51.08 1962 480.4 - 10.45 51.08 1963 662.1 - 10.45 51.08 1964 631.2 - 10.45 51.08 1965 833.2 - 10.45 51.08 1966 833.1 - 10.45 51.08 1967 709.8 - 10.45 51.08 1968 653.3 - 10.45 51.08 1969 450.4 - 10.45 51.08 1970 502.4 - 10.45 51.08 1971 181.1 - 10.45 51.08 1972 1000.0 - 10.45 51.08 1973 440.3 - 10.45 51.08 1974 1000.0 - 10.45 51.08 1975 389.0 - 10.45 51.08 1976 190.0 - 10.45 51.08 1977 713.6 - 10.45 51.08 1978 670.8 - 10.45 51.08 1979 504.4 - 10.45 51.08 1980 473.0 - 10.45 51.08 1981 733.9 - 10.45 51.08 1982 188.8 - 10.45 51.08 1983 409.2 - 10.45 51.08 1984 1000.0 - 10.45 51.08 1985 452.9 - 10.45 51.08 1986 489.7 - 10.45 51.08 1987 1000.0 - 10.45 51.08 1988 456.4 - 10.45 51.08 1989 621.0 - 10.45 51.08 1990 440.4 - 10.45 51.08 1991 438.5 - 10.45 51.08 1992 474.8 - 10.45 51.08 1993 528.7 - 10.45 51.08 1994 626.3 - 10.45 51.08 1995 891.2 - 10.45 51.08 1996 1000.0 - 10.45 51.08 1997 480.4 - 10.45 51.08 1998 518.6 - 10.45 51.08 1999 554.0 - 10.45 51.08 2000 474.6 - 10.45 51.08 2001 506.9 - 10.45 51.08 2002 1000.0 - 10.45 51.08 2003 191.5 - 10.45 51.08 2004 473.1 - 10.45 51.08 2005 486.3 - 10.45 51.08 2006 659.6 - 10.45 51.08 2007 605.6 - 10.45 51.08 2008 471.4 - 10.45 51.08 2009 522.9 - 10.45 51.08 2010 548.4 - 10.45 51.08 2011 326.8 - 10.45 51.08 2012 560.0 diff --git a/rLPJGUESS/inst/extdata/outputsForTests/run_npatch/outDirectory/fpc.out b/rLPJGUESS/inst/extdata/outputsForTests/run_npatch/outDirectory/fpc.out deleted file mode 100644 index a47a3ae..0000000 --- a/rLPJGUESS/inst/extdata/outputsForTests/run_npatch/outDirectory/fpc.out +++ /dev/null @@ -1,63 +0,0 @@ - Lon Lat Year Abi_alb BES Bet_pen Bet_pub Car_bet Cor_ave Fag_syl Fra_exc Jun_oxy MRS Pic_abi Pic_sit Pin_syl Pin_hal Pop_tre Que_coc Que_ile Que_pub Que_rob Til_cor Ulm_gla C3_gr C4_gr Total - 10.45 51.08 1951 0.000 0.001 0.049 0.150 0.052 0.013 0.204 0.063 0.000 0.000 0.002 0.003 0.004 0.000 0.031 0.000 0.000 0.015 0.062 0.038 0.044 0.000 0.000 0.731 - 10.45 51.08 1952 0.000 0.001 0.045 0.155 0.052 0.011 0.201 0.063 0.000 0.000 0.002 0.003 0.004 0.000 0.029 0.000 0.000 0.015 0.061 0.038 0.045 0.000 0.000 0.725 - 10.45 51.08 1953 0.000 0.001 0.042 0.153 0.053 0.011 0.202 0.062 0.000 0.000 0.002 0.002 0.004 0.000 0.029 0.000 0.000 0.015 0.061 0.037 0.045 0.000 0.000 0.719 - 10.45 51.08 1954 0.000 0.000 0.040 0.156 0.052 0.009 0.201 0.062 0.000 0.000 0.002 0.002 0.003 0.000 0.027 0.000 0.000 0.015 0.062 0.036 0.046 0.000 0.000 0.715 - 10.45 51.08 1955 0.000 0.000 0.037 0.163 0.053 0.008 0.193 0.062 0.000 0.000 0.002 0.001 0.003 0.000 0.025 0.000 0.000 0.015 0.062 0.036 0.047 0.000 0.000 0.709 - 10.45 51.08 1956 0.000 0.000 0.036 0.171 0.053 0.007 0.193 0.062 0.000 0.000 0.002 0.001 0.003 0.000 0.024 0.000 0.000 0.015 0.062 0.036 0.046 0.000 0.000 0.712 - 10.45 51.08 1957 0.000 0.000 0.034 0.176 0.054 0.006 0.194 0.062 0.000 0.000 0.002 0.000 0.003 0.000 0.021 0.000 0.000 0.013 0.061 0.035 0.046 0.000 0.000 0.707 - 10.45 51.08 1958 0.000 0.000 0.030 0.183 0.054 0.005 0.171 0.062 0.000 0.000 0.002 0.000 0.002 0.000 0.018 0.000 0.000 0.013 0.061 0.035 0.045 0.000 0.000 0.682 - 10.45 51.08 1959 0.000 0.000 0.024 0.185 0.051 0.004 0.172 0.058 0.000 0.000 0.001 0.000 0.002 0.000 0.014 0.000 0.000 0.014 0.061 0.033 0.044 0.000 0.000 0.664 - 10.45 51.08 1960 0.000 0.000 0.023 0.194 0.053 0.004 0.174 0.060 0.000 0.000 0.001 0.000 0.001 0.000 0.014 0.000 0.000 0.012 0.060 0.033 0.044 0.035 0.000 0.707 - 10.45 51.08 1961 0.000 0.000 0.023 0.200 0.051 0.003 0.175 0.060 0.000 0.000 0.001 0.000 0.001 0.000 0.012 0.000 0.000 0.012 0.061 0.032 0.045 0.006 0.000 0.682 - 10.45 51.08 1962 0.000 0.000 0.021 0.204 0.048 0.002 0.175 0.059 0.000 0.000 0.001 0.000 0.000 0.000 0.011 0.000 0.000 0.012 0.060 0.030 0.042 0.003 0.000 0.669 - 10.45 51.08 1963 0.000 0.000 0.019 0.211 0.045 0.001 0.176 0.058 0.000 0.000 0.001 0.000 0.000 0.000 0.008 0.000 0.000 0.012 0.059 0.029 0.043 0.001 0.000 0.664 - 10.45 51.08 1964 0.000 0.000 0.016 0.211 0.045 0.001 0.176 0.057 0.000 0.000 0.001 0.000 0.000 0.000 0.007 0.000 0.000 0.013 0.059 0.026 0.042 0.001 0.000 0.656 - 10.45 51.08 1965 0.000 0.000 0.016 0.208 0.045 0.001 0.178 0.058 0.000 0.000 0.001 0.000 0.000 0.000 0.007 0.000 0.000 0.013 0.057 0.026 0.043 0.000 0.000 0.654 - 10.45 51.08 1966 0.000 0.000 0.014 0.216 0.046 0.001 0.180 0.058 0.000 0.000 0.001 0.000 0.000 0.000 0.007 0.000 0.000 0.013 0.058 0.025 0.045 0.000 0.000 0.663 - 10.45 51.08 1967 0.000 0.000 0.014 0.222 0.044 0.000 0.110 0.058 0.000 0.000 0.000 0.000 0.000 0.000 0.005 0.000 0.000 0.013 0.054 0.025 0.042 0.000 0.000 0.588 - 10.45 51.08 1968 0.000 0.000 0.014 0.223 0.043 0.000 0.111 0.058 0.000 0.000 0.000 0.000 0.000 0.000 0.004 0.000 0.000 0.013 0.054 0.024 0.042 0.000 0.000 0.587 - 10.45 51.08 1969 0.000 0.001 0.014 0.234 0.046 0.003 0.113 0.059 0.000 0.000 0.001 0.001 0.001 0.000 0.007 0.000 0.000 0.013 0.056 0.026 0.043 0.147 0.000 0.764 - 10.45 51.08 1970 0.000 0.001 0.013 0.245 0.048 0.005 0.115 0.060 0.000 0.000 0.001 0.001 0.002 0.000 0.009 0.000 0.000 0.013 0.057 0.027 0.044 0.136 0.000 0.779 - 10.45 51.08 1971 0.000 0.001 0.013 0.253 0.049 0.007 0.117 0.059 0.000 0.000 0.002 0.002 0.002 0.000 0.013 0.000 0.000 0.013 0.057 0.026 0.044 0.089 0.000 0.747 - 10.45 51.08 1972 0.000 0.002 0.015 0.263 0.051 0.010 0.120 0.060 0.000 0.000 0.002 0.002 0.003 0.000 0.017 0.000 0.000 0.013 0.056 0.026 0.046 0.040 0.000 0.726 - 10.45 51.08 1973 0.000 0.002 0.016 0.265 0.051 0.012 0.122 0.058 0.000 0.000 0.002 0.003 0.004 0.000 0.020 0.000 0.000 0.013 0.056 0.026 0.046 0.004 0.000 0.699 - 10.45 51.08 1974 0.000 0.002 0.017 0.278 0.051 0.014 0.124 0.061 0.000 0.000 0.003 0.003 0.004 0.000 0.024 0.000 0.000 0.013 0.058 0.028 0.049 0.000 0.000 0.729 - 10.45 51.08 1975 0.000 0.002 0.019 0.283 0.052 0.015 0.126 0.060 0.000 0.000 0.003 0.003 0.004 0.000 0.026 0.000 0.000 0.013 0.060 0.029 0.048 0.000 0.000 0.742 - 10.45 51.08 1976 0.000 0.002 0.019 0.146 0.044 0.015 0.105 0.047 0.000 0.000 0.003 0.003 0.004 0.000 0.026 0.000 0.000 0.013 0.048 0.027 0.037 0.000 0.000 0.539 - 10.45 51.08 1977 0.000 0.001 0.020 0.151 0.045 0.016 0.107 0.049 0.000 0.000 0.003 0.003 0.004 0.000 0.028 0.000 0.000 0.013 0.047 0.027 0.039 0.000 0.000 0.553 - 10.45 51.08 1978 0.000 0.002 0.025 0.163 0.051 0.018 0.109 0.050 0.000 0.000 0.003 0.004 0.006 0.000 0.031 0.000 0.000 0.013 0.051 0.030 0.042 0.147 0.000 0.744 - 10.45 51.08 1979 0.000 0.002 0.027 0.172 0.053 0.019 0.112 0.049 0.000 0.000 0.003 0.004 0.006 0.000 0.033 0.000 0.000 0.012 0.053 0.031 0.043 0.137 0.000 0.759 - 10.45 51.08 1980 0.000 0.002 0.031 0.172 0.056 0.020 0.106 0.052 0.000 0.000 0.004 0.004 0.007 0.000 0.036 0.000 0.000 0.012 0.055 0.034 0.046 0.099 0.000 0.737 - 10.45 51.08 1981 0.000 0.002 0.033 0.184 0.061 0.022 0.109 0.055 0.000 0.000 0.004 0.004 0.008 0.000 0.041 0.000 0.000 0.013 0.059 0.039 0.051 0.019 0.000 0.705 - 10.45 51.08 1982 0.000 0.002 0.035 0.187 0.062 0.022 0.110 0.055 0.000 0.000 0.004 0.004 0.008 0.000 0.041 0.000 0.000 0.013 0.060 0.041 0.052 0.002 0.000 0.698 - 10.45 51.08 1983 0.000 0.002 0.037 0.190 0.064 0.022 0.111 0.056 0.000 0.000 0.004 0.004 0.008 0.000 0.043 0.000 0.000 0.013 0.062 0.042 0.055 0.019 0.000 0.731 - 10.45 51.08 1984 0.000 0.002 0.039 0.200 0.066 0.022 0.112 0.057 0.000 0.000 0.004 0.004 0.009 0.000 0.044 0.000 0.000 0.013 0.063 0.043 0.057 0.007 0.000 0.742 - 10.45 51.08 1985 0.000 0.002 0.041 0.210 0.070 0.021 0.115 0.059 0.000 0.000 0.004 0.003 0.008 0.000 0.045 0.000 0.000 0.013 0.066 0.044 0.060 0.005 0.000 0.766 - 10.45 51.08 1986 0.000 0.002 0.043 0.222 0.074 0.020 0.116 0.061 0.000 0.000 0.004 0.003 0.008 0.000 0.044 0.000 0.000 0.013 0.066 0.045 0.063 0.002 0.000 0.785 - 10.45 51.08 1987 0.000 0.001 0.042 0.232 0.076 0.019 0.118 0.063 0.000 0.000 0.004 0.002 0.008 0.000 0.045 0.000 0.000 0.011 0.069 0.045 0.065 0.001 0.000 0.801 - 10.45 51.08 1988 0.000 0.001 0.040 0.115 0.068 0.017 0.097 0.046 0.000 0.000 0.004 0.002 0.007 0.000 0.039 0.000 0.000 0.011 0.057 0.040 0.052 0.000 0.000 0.595 - 10.45 51.08 1989 0.000 0.000 0.037 0.116 0.065 0.016 0.097 0.046 0.000 0.000 0.003 0.002 0.006 0.000 0.035 0.000 0.000 0.011 0.055 0.037 0.052 0.000 0.000 0.579 - 10.45 51.08 1990 0.000 0.000 0.039 0.123 0.068 0.014 0.099 0.049 0.000 0.000 0.003 0.001 0.006 0.000 0.035 0.000 0.000 0.012 0.058 0.038 0.052 0.158 0.000 0.757 - 10.45 51.08 1991 0.000 0.000 0.035 0.131 0.068 0.012 0.103 0.050 0.000 0.000 0.003 0.001 0.005 0.000 0.034 0.000 0.000 0.013 0.056 0.036 0.054 0.124 0.000 0.725 - 10.45 51.08 1992 0.000 0.000 0.032 0.140 0.069 0.010 0.107 0.053 0.000 0.000 0.003 0.001 0.005 0.000 0.030 0.000 0.000 0.013 0.058 0.036 0.055 0.104 0.000 0.716 - 10.45 51.08 1993 0.000 0.000 0.032 0.153 0.073 0.010 0.113 0.057 0.000 0.000 0.003 0.001 0.004 0.000 0.031 0.000 0.000 0.013 0.063 0.039 0.058 0.059 0.000 0.709 - 10.45 51.08 1994 0.000 0.000 0.033 0.166 0.076 0.010 0.120 0.061 0.000 0.000 0.003 0.000 0.004 0.000 0.032 0.000 0.000 0.014 0.066 0.039 0.062 0.005 0.000 0.693 - 10.45 51.08 1995 0.000 0.000 0.033 0.178 0.080 0.009 0.124 0.063 0.000 0.000 0.003 0.000 0.004 0.000 0.033 0.000 0.000 0.014 0.070 0.040 0.066 0.000 0.000 0.717 - 10.45 51.08 1996 0.000 0.000 0.031 0.186 0.081 0.008 0.127 0.065 0.000 0.000 0.003 0.000 0.003 0.000 0.032 0.000 0.000 0.014 0.071 0.041 0.068 0.000 0.000 0.731 - 10.45 51.08 1997 0.000 0.000 0.031 0.199 0.080 0.007 0.131 0.066 0.000 0.000 0.002 0.000 0.003 0.000 0.030 0.000 0.000 0.014 0.072 0.040 0.070 0.000 0.000 0.747 - 10.45 51.08 1998 0.000 0.000 0.031 0.209 0.080 0.006 0.133 0.067 0.000 0.000 0.002 0.000 0.002 0.000 0.025 0.000 0.000 0.014 0.072 0.039 0.071 0.000 0.000 0.752 - 10.45 51.08 1999 0.000 0.000 0.030 0.221 0.078 0.005 0.136 0.070 0.000 0.000 0.002 0.000 0.002 0.000 0.022 0.000 0.000 0.015 0.073 0.038 0.073 0.000 0.000 0.765 - 10.45 51.08 2000 0.000 0.000 0.028 0.229 0.078 0.004 0.137 0.068 0.000 0.000 0.002 0.000 0.001 0.000 0.019 0.000 0.000 0.015 0.071 0.036 0.073 0.000 0.000 0.763 - 10.45 51.08 2001 0.000 0.000 0.026 0.236 0.077 0.003 0.139 0.069 0.000 0.000 0.002 0.000 0.001 0.000 0.018 0.000 0.000 0.015 0.070 0.034 0.072 0.000 0.000 0.762 - 10.45 51.08 2002 0.000 0.000 0.021 0.242 0.076 0.003 0.140 0.067 0.000 0.000 0.003 0.000 0.001 0.000 0.017 0.000 0.000 0.015 0.068 0.033 0.072 0.000 0.000 0.756 - 10.45 51.08 2003 0.000 0.000 0.019 0.247 0.072 0.002 0.140 0.062 0.000 0.000 0.003 0.000 0.001 0.000 0.015 0.000 0.000 0.014 0.065 0.027 0.069 0.000 0.000 0.736 - 10.45 51.08 2004 0.000 0.000 0.017 0.252 0.072 0.002 0.141 0.063 0.000 0.000 0.003 0.000 0.001 0.000 0.011 0.000 0.000 0.013 0.064 0.025 0.070 0.000 0.000 0.735 - 10.45 51.08 2005 0.000 0.000 0.015 0.255 0.070 0.002 0.142 0.062 0.000 0.000 0.003 0.000 0.001 0.000 0.010 0.000 0.000 0.010 0.063 0.024 0.067 0.000 0.000 0.724 - 10.45 51.08 2006 0.000 0.000 0.012 0.260 0.070 0.002 0.143 0.060 0.000 0.000 0.003 0.000 0.001 0.000 0.007 0.000 0.000 0.010 0.060 0.023 0.067 0.000 0.000 0.719 - 10.45 51.08 2007 0.000 0.000 0.012 0.272 0.070 0.002 0.145 0.062 0.000 0.000 0.003 0.000 0.001 0.000 0.007 0.000 0.000 0.010 0.060 0.020 0.066 0.000 0.000 0.730 - 10.45 51.08 2008 0.000 0.000 0.009 0.279 0.067 0.001 0.145 0.059 0.000 0.000 0.003 0.000 0.000 0.000 0.005 0.000 0.000 0.010 0.057 0.019 0.063 0.000 0.000 0.718 - 10.45 51.08 2009 0.000 0.000 0.008 0.284 0.065 0.001 0.145 0.059 0.000 0.000 0.003 0.000 0.000 0.000 0.005 0.000 0.000 0.010 0.057 0.017 0.061 0.000 0.000 0.716 - 10.45 51.08 2010 0.000 0.000 0.007 0.292 0.059 0.001 0.145 0.056 0.000 0.000 0.003 0.000 0.000 0.000 0.004 0.000 0.000 0.010 0.055 0.015 0.061 0.000 0.000 0.708 - 10.45 51.08 2011 0.000 0.000 0.007 0.301 0.058 0.001 0.145 0.056 0.000 0.000 0.003 0.000 0.000 0.000 0.003 0.000 0.000 0.010 0.054 0.014 0.060 0.000 0.000 0.712 - 10.45 51.08 2012 0.000 0.000 0.005 0.298 0.054 0.001 0.145 0.053 0.000 0.000 0.003 0.000 0.000 0.000 0.003 0.000 0.000 0.009 0.051 0.011 0.058 0.000 0.000 0.692 diff --git a/rLPJGUESS/inst/extdata/outputsForTests/run_npatch/outDirectory/lai.out b/rLPJGUESS/inst/extdata/outputsForTests/run_npatch/outDirectory/lai.out deleted file mode 100644 index 8ab3f5f..0000000 --- a/rLPJGUESS/inst/extdata/outputsForTests/run_npatch/outDirectory/lai.out +++ /dev/null @@ -1,63 +0,0 @@ - Lon Lat Year Abi_alb BES Bet_pen Bet_pub Car_bet Cor_ave Fag_syl Fra_exc Jun_oxy MRS Pic_abi Pic_sit Pin_syl Pin_hal Pop_tre Que_coc Que_ile Que_pub Que_rob Til_cor Ulm_gla C3_gr C4_gr Total - 10.45 51.08 1951 0.0000 0.0053 0.1930 0.7672 0.2081 0.0456 1.4567 0.2545 0.0000 0.0000 0.0076 0.0136 0.0143 0.0000 0.1270 0.0000 0.0000 0.0433 0.2351 0.1594 0.1875 0.0000 0.0000 3.7181 - 10.45 51.08 1952 0.0000 0.0030 0.1706 0.7828 0.2073 0.0402 1.4553 0.2534 0.0000 0.0000 0.0069 0.0095 0.0127 0.0000 0.1158 0.0000 0.0000 0.0428 0.2296 0.1548 0.1879 0.0000 0.0000 3.6726 - 10.45 51.08 1953 0.0000 0.0022 0.1602 0.7564 0.2054 0.0372 1.4741 0.2472 0.0000 0.0000 0.0065 0.0067 0.0114 0.0000 0.1135 0.0000 0.0000 0.0438 0.2273 0.1485 0.1889 0.0000 0.0000 3.6292 - 10.45 51.08 1954 0.0000 0.0014 0.1495 0.7646 0.2014 0.0300 1.4696 0.2455 0.0000 0.0000 0.0062 0.0051 0.0104 0.0000 0.1050 0.0000 0.0000 0.0441 0.2265 0.1401 0.1891 0.0000 0.0000 3.5885 - 10.45 51.08 1955 0.0000 0.0006 0.1366 0.7966 0.2023 0.0256 1.3932 0.2432 0.0000 0.0000 0.0056 0.0030 0.0092 0.0000 0.0956 0.0000 0.0000 0.0440 0.2261 0.1374 0.1900 0.0000 0.0000 3.5090 - 10.45 51.08 1956 0.0000 0.0002 0.1289 0.8306 0.2005 0.0218 1.4039 0.2425 0.0000 0.0000 0.0052 0.0016 0.0083 0.0000 0.0896 0.0000 0.0000 0.0443 0.2238 0.1380 0.1844 0.0000 0.0000 3.5237 - 10.45 51.08 1957 0.0000 0.0000 0.1219 0.8579 0.2032 0.0185 1.4216 0.2378 0.0000 0.0000 0.0047 0.0005 0.0074 0.0000 0.0769 0.0000 0.0000 0.0387 0.2183 0.1320 0.1842 0.0000 0.0000 3.5236 - 10.45 51.08 1958 0.0000 0.0000 0.1076 0.8919 0.2003 0.0160 1.1971 0.2356 0.0000 0.0000 0.0040 0.0004 0.0058 0.0000 0.0651 0.0000 0.0000 0.0385 0.2188 0.1295 0.1782 0.0000 0.0000 3.2888 - 10.45 51.08 1959 0.0000 0.0000 0.0815 0.8816 0.1854 0.0112 1.2444 0.2164 0.0000 0.0000 0.0034 0.0003 0.0038 0.0000 0.0496 0.0000 0.0000 0.0402 0.2101 0.1149 0.1678 0.0000 0.0000 3.2106 - 10.45 51.08 1960 0.0000 0.0000 0.0784 0.9287 0.1889 0.0102 1.2753 0.2211 0.0000 0.0000 0.0033 0.0003 0.0030 0.0000 0.0485 0.0000 0.0000 0.0348 0.2078 0.1144 0.1675 0.0728 0.0000 3.3548 - 10.45 51.08 1961 0.0000 0.0000 0.0777 0.9585 0.1828 0.0080 1.3073 0.2212 0.0000 0.0000 0.0035 0.0002 0.0020 0.0000 0.0403 0.0000 0.0000 0.0355 0.2108 0.1098 0.1708 0.0116 0.0000 3.3400 - 10.45 51.08 1962 0.0000 0.0000 0.0671 0.9613 0.1674 0.0050 1.3263 0.2112 0.0000 0.0000 0.0037 0.0001 0.0006 0.0000 0.0340 0.0000 0.0000 0.0360 0.2027 0.0992 0.1558 0.0064 0.0000 3.2770 - 10.45 51.08 1963 0.0000 0.0000 0.0590 0.9930 0.1567 0.0035 1.3524 0.2050 0.0000 0.0000 0.0039 0.0001 0.0000 0.0000 0.0244 0.0000 0.0000 0.0359 0.1979 0.0942 0.1562 0.0026 0.0000 3.2848 - 10.45 51.08 1964 0.0000 0.0000 0.0507 0.9781 0.1517 0.0029 1.3805 0.1991 0.0000 0.0000 0.0040 0.0001 0.0000 0.0000 0.0204 0.0000 0.0000 0.0363 0.1922 0.0838 0.1513 0.0015 0.0000 3.2524 - 10.45 51.08 1965 0.0000 0.0000 0.0481 0.9553 0.1502 0.0018 1.4007 0.2029 0.0000 0.0000 0.0042 0.0001 0.0001 0.0000 0.0201 0.0000 0.0000 0.0363 0.1884 0.0827 0.1545 0.0007 0.0000 3.2462 - 10.45 51.08 1966 0.0000 0.0000 0.0433 1.0000 0.1544 0.0013 1.4372 0.2018 0.0000 0.0000 0.0043 0.0001 0.0001 0.0000 0.0199 0.0000 0.0000 0.0377 0.1904 0.0793 0.1591 0.0003 0.0000 3.3291 - 10.45 51.08 1967 0.0000 0.0000 0.0420 1.0327 0.1492 0.0008 0.9581 0.2012 0.0000 0.0000 0.0010 0.0000 0.0000 0.0000 0.0154 0.0000 0.0000 0.0378 0.1794 0.0773 0.1479 0.0000 0.0000 2.8428 - 10.45 51.08 1968 0.0000 0.0000 0.0400 1.0349 0.1435 0.0006 0.9710 0.1997 0.0000 0.0000 0.0010 0.0000 0.0000 0.0000 0.0110 0.0000 0.0000 0.0385 0.1781 0.0729 0.1464 0.0000 0.0000 2.8377 - 10.45 51.08 1969 0.0000 0.0041 0.0428 1.0772 0.1537 0.0106 0.9840 0.2009 0.0000 0.0000 0.0036 0.0043 0.0046 0.0000 0.0256 0.0000 0.0000 0.0382 0.1834 0.0803 0.1510 0.5305 0.0000 3.4947 - 10.45 51.08 1970 0.0000 0.0061 0.0429 1.1204 0.1623 0.0187 0.9958 0.2050 0.0000 0.0000 0.0055 0.0069 0.0072 0.0000 0.0369 0.0000 0.0000 0.0376 0.1902 0.0841 0.1561 0.4582 0.0000 3.5337 - 10.45 51.08 1971 0.0000 0.0078 0.0462 1.1339 0.1677 0.0288 1.0119 0.1981 0.0000 0.0000 0.0075 0.0096 0.0103 0.0000 0.0550 0.0000 0.0000 0.0375 0.1886 0.0865 0.1555 0.2368 0.0000 3.3817 - 10.45 51.08 1972 0.0000 0.0097 0.0590 1.1868 0.1805 0.0398 1.0280 0.2061 0.0000 0.0000 0.0100 0.0131 0.0138 0.0000 0.0766 0.0000 0.0000 0.0370 0.1938 0.0929 0.1651 0.0883 0.0000 3.4005 - 10.45 51.08 1973 0.0000 0.0102 0.0659 1.1787 0.1841 0.0487 1.0316 0.1990 0.0000 0.0000 0.0118 0.0153 0.0162 0.0000 0.0956 0.0000 0.0000 0.0363 0.1943 0.0951 0.1666 0.0080 0.0000 3.3574 - 10.45 51.08 1974 0.0000 0.0101 0.0752 1.2480 0.1904 0.0568 1.0519 0.2114 0.0000 0.0000 0.0132 0.0166 0.0179 0.0000 0.1140 0.0000 0.0000 0.0367 0.2078 0.1069 0.1808 0.0000 0.0000 3.5379 - 10.45 51.08 1975 0.0000 0.0094 0.0812 1.2654 0.1971 0.0604 1.0531 0.2095 0.0000 0.0000 0.0137 0.0164 0.0185 0.0000 0.1213 0.0000 0.0000 0.0360 0.2146 0.1113 0.1781 0.0000 0.0000 3.5859 - 10.45 51.08 1976 0.0000 0.0086 0.0804 0.6885 0.1719 0.0593 0.9762 0.1704 0.0000 0.0000 0.0130 0.0149 0.0175 0.0000 0.1185 0.0000 0.0000 0.0346 0.1792 0.1028 0.1434 0.0000 0.0000 2.7789 - 10.45 51.08 1977 0.0000 0.0070 0.0853 0.7155 0.1782 0.0603 0.9832 0.1774 0.0000 0.0000 0.0127 0.0137 0.0170 0.0000 0.1228 0.0000 0.0000 0.0345 0.1777 0.1037 0.1509 0.0000 0.0000 2.8401 - 10.45 51.08 1978 0.0000 0.0109 0.1036 0.7682 0.2007 0.0676 0.9923 0.1836 0.0000 0.0000 0.0144 0.0159 0.0218 0.0000 0.1354 0.0000 0.0000 0.0343 0.1931 0.1193 0.1633 0.5287 0.0000 3.5531 - 10.45 51.08 1979 0.0000 0.0120 0.1135 0.8063 0.2120 0.0704 0.9958 0.1850 0.0000 0.0000 0.0153 0.0170 0.0246 0.0000 0.1414 0.0000 0.0000 0.0340 0.2008 0.1227 0.1712 0.4612 0.0000 3.5831 - 10.45 51.08 1980 0.0000 0.0126 0.1287 0.7925 0.2230 0.0731 0.9182 0.1954 0.0000 0.0000 0.0165 0.0185 0.0279 0.0000 0.1502 0.0000 0.0000 0.0335 0.2072 0.1357 0.1835 0.2714 0.0000 3.3876 - 10.45 51.08 1981 0.0000 0.0113 0.1430 0.8554 0.2494 0.0811 0.9504 0.2121 0.0000 0.0000 0.0174 0.0190 0.0301 0.0000 0.1737 0.0000 0.0000 0.0347 0.2279 0.1600 0.2050 0.0402 0.0000 3.4107 - 10.45 51.08 1982 0.0000 0.0122 0.1507 0.8363 0.2508 0.0786 0.9537 0.2079 0.0000 0.0000 0.0178 0.0181 0.0318 0.0000 0.1696 0.0000 0.0000 0.0345 0.2262 0.1649 0.2072 0.0045 0.0000 3.3648 - 10.45 51.08 1983 0.0000 0.0118 0.1601 0.8431 0.2659 0.0794 0.9739 0.2176 0.0000 0.0000 0.0172 0.0164 0.0319 0.0000 0.1808 0.0000 0.0000 0.0345 0.2382 0.1717 0.2236 0.0391 0.0000 3.5052 - 10.45 51.08 1984 0.0000 0.0114 0.1683 0.8853 0.2758 0.0777 0.9794 0.2215 0.0000 0.0000 0.0175 0.0156 0.0317 0.0000 0.1835 0.0000 0.0000 0.0347 0.2436 0.1772 0.2321 0.0139 0.0000 3.5692 - 10.45 51.08 1985 0.0000 0.0093 0.1749 0.9347 0.2912 0.0732 1.0080 0.2322 0.0000 0.0000 0.0166 0.0133 0.0298 0.0000 0.1834 0.0000 0.0000 0.0354 0.2540 0.1836 0.2441 0.0091 0.0000 3.6931 - 10.45 51.08 1986 0.0000 0.0079 0.1798 0.9945 0.3059 0.0704 1.0268 0.2389 0.0000 0.0000 0.0162 0.0106 0.0283 0.0000 0.1805 0.0000 0.0000 0.0353 0.2576 0.1846 0.2555 0.0035 0.0000 3.7963 - 10.45 51.08 1987 0.0000 0.0050 0.1748 1.0427 0.3153 0.0663 1.0402 0.2450 0.0000 0.0000 0.0154 0.0095 0.0261 0.0000 0.1804 0.0000 0.0000 0.0299 0.2647 0.1861 0.2630 0.0017 0.0000 3.8661 - 10.45 51.08 1988 0.0000 0.0030 0.1574 0.5334 0.2847 0.0567 0.9657 0.1927 0.0000 0.0000 0.0143 0.0074 0.0226 0.0000 0.1504 0.0000 0.0000 0.0306 0.2269 0.1629 0.2185 0.0009 0.0000 3.0281 - 10.45 51.08 1989 0.0000 0.0017 0.1420 0.5352 0.2643 0.0492 0.9876 0.1871 0.0000 0.0000 0.0132 0.0056 0.0200 0.0000 0.1301 0.0000 0.0000 0.0315 0.2153 0.1461 0.2120 0.0006 0.0000 2.9415 - 10.45 51.08 1990 0.0000 0.0011 0.1463 0.5789 0.2735 0.0432 1.0286 0.2000 0.0000 0.0000 0.0132 0.0046 0.0177 0.0000 0.1290 0.0000 0.0000 0.0345 0.2286 0.1489 0.2157 0.6230 0.0000 3.6868 - 10.45 51.08 1991 0.0000 0.0010 0.1267 0.6115 0.2647 0.0352 1.0535 0.2011 0.0000 0.0000 0.0112 0.0027 0.0151 0.0000 0.1211 0.0000 0.0000 0.0363 0.2165 0.1353 0.2166 0.3854 0.0000 3.4338 - 10.45 51.08 1992 0.0000 0.0009 0.1162 0.6564 0.2683 0.0303 1.0733 0.2128 0.0000 0.0000 0.0116 0.0023 0.0141 0.0000 0.1066 0.0000 0.0000 0.0375 0.2231 0.1349 0.2223 0.2941 0.0000 3.4047 - 10.45 51.08 1993 0.0000 0.0009 0.1174 0.7413 0.2903 0.0295 1.1228 0.2355 0.0000 0.0000 0.0117 0.0019 0.0128 0.0000 0.1110 0.0000 0.0000 0.0403 0.2488 0.1481 0.2418 0.1411 0.0000 3.4952 - 10.45 51.08 1994 0.0000 0.0010 0.1232 0.8271 0.3097 0.0295 1.1596 0.2577 0.0000 0.0000 0.0117 0.0021 0.0117 0.0000 0.1172 0.0000 0.0000 0.0424 0.2661 0.1514 0.2650 0.0105 0.0000 3.5858 - 10.45 51.08 1995 0.0000 0.0011 0.1215 0.8981 0.3231 0.0280 1.1824 0.2693 0.0000 0.0000 0.0115 0.0021 0.0104 0.0000 0.1203 0.0000 0.0000 0.0434 0.2796 0.1543 0.2810 0.0001 0.0000 3.7261 - 10.45 51.08 1996 0.0000 0.0010 0.1126 0.9404 0.3269 0.0258 1.1950 0.2758 0.0000 0.0000 0.0108 0.0020 0.0090 0.0000 0.1148 0.0000 0.0000 0.0440 0.2835 0.1543 0.2879 0.0000 0.0000 3.7839 - 10.45 51.08 1997 0.0000 0.0010 0.1108 1.0109 0.3200 0.0224 1.2177 0.2794 0.0000 0.0000 0.0109 0.0019 0.0081 0.0000 0.1051 0.0000 0.0000 0.0451 0.2846 0.1495 0.2961 0.0000 0.0000 3.8635 - 10.45 51.08 1998 0.0000 0.0010 0.1060 1.0549 0.3130 0.0187 1.2359 0.2806 0.0000 0.0000 0.0107 0.0018 0.0061 0.0000 0.0863 0.0000 0.0000 0.0459 0.2787 0.1436 0.2973 0.0000 0.0000 3.8806 - 10.45 51.08 1999 0.0000 0.0009 0.1020 1.1253 0.3076 0.0156 1.2639 0.2910 0.0000 0.0000 0.0110 0.0016 0.0047 0.0000 0.0753 0.0000 0.0000 0.0466 0.2803 0.1379 0.3051 0.0000 0.0000 3.9687 - 10.45 51.08 2000 0.0000 0.0002 0.0939 1.1530 0.3022 0.0134 1.2732 0.2823 0.0000 0.0000 0.0114 0.0015 0.0026 0.0000 0.0652 0.0000 0.0000 0.0462 0.2696 0.1276 0.2996 0.0000 0.0000 3.9420 - 10.45 51.08 2001 0.0000 0.0002 0.0839 1.1817 0.2915 0.0100 1.2845 0.2828 0.0000 0.0000 0.0114 0.0013 0.0024 0.0000 0.0584 0.0000 0.0000 0.0461 0.2593 0.1192 0.2967 0.0000 0.0000 3.9295 - 10.45 51.08 2002 0.0000 0.0002 0.0678 1.2040 0.2840 0.0082 1.2825 0.2735 0.0000 0.0000 0.0114 0.0012 0.0021 0.0000 0.0541 0.0000 0.0000 0.0452 0.2481 0.1122 0.2916 0.0000 0.0000 3.8861 - 10.45 51.08 2003 0.0000 0.0002 0.0584 1.2010 0.2620 0.0072 1.2810 0.2496 0.0000 0.0000 0.0116 0.0011 0.0020 0.0000 0.0453 0.0000 0.0000 0.0439 0.2323 0.0924 0.2746 0.0000 0.0000 3.7625 - 10.45 51.08 2004 0.0000 0.0002 0.0520 1.2242 0.2595 0.0069 1.3092 0.2510 0.0000 0.0000 0.0120 0.0010 0.0018 0.0000 0.0357 0.0000 0.0000 0.0393 0.2265 0.0854 0.2759 0.0000 0.0000 3.7805 - 10.45 51.08 2005 0.0000 0.0002 0.0442 1.2422 0.2518 0.0065 1.3269 0.2469 0.0000 0.0000 0.0122 0.0009 0.0017 0.0000 0.0304 0.0000 0.0000 0.0334 0.2177 0.0812 0.2638 0.0000 0.0000 3.7598 - 10.45 51.08 2006 0.0000 0.0001 0.0345 1.2642 0.2494 0.0059 1.3335 0.2417 0.0000 0.0000 0.0120 0.0007 0.0015 0.0000 0.0213 0.0000 0.0000 0.0321 0.2081 0.0753 0.2657 0.0000 0.0000 3.7458 - 10.45 51.08 2007 0.0000 0.0001 0.0334 1.3305 0.2498 0.0055 1.3472 0.2482 0.0000 0.0000 0.0132 0.0007 0.0014 0.0000 0.0203 0.0000 0.0000 0.0323 0.2073 0.0673 0.2641 0.0000 0.0000 3.8214 - 10.45 51.08 2008 0.0000 0.0001 0.0246 1.3446 0.2362 0.0042 1.3476 0.2379 0.0000 0.0000 0.0135 0.0006 0.0013 0.0000 0.0141 0.0000 0.0000 0.0315 0.1912 0.0615 0.2505 0.0000 0.0000 3.7593 - 10.45 51.08 2009 0.0000 0.0001 0.0215 1.3620 0.2238 0.0038 1.3507 0.2351 0.0000 0.0000 0.0139 0.0005 0.0012 0.0000 0.0130 0.0000 0.0000 0.0308 0.1859 0.0542 0.2440 0.0000 0.0000 3.7405 - 10.45 51.08 2010 0.0000 0.0001 0.0188 1.3938 0.2038 0.0017 1.3432 0.2264 0.0000 0.0000 0.0136 0.0003 0.0011 0.0000 0.0105 0.0000 0.0000 0.0293 0.1772 0.0487 0.2411 0.0000 0.0000 3.7098 - 10.45 51.08 2011 0.0000 0.0001 0.0178 1.4311 0.1974 0.0016 1.3611 0.2252 0.0000 0.0000 0.0145 0.0003 0.0010 0.0000 0.0080 0.0000 0.0000 0.0294 0.1720 0.0439 0.2391 0.0000 0.0000 3.7424 - 10.45 51.08 2012 0.0000 0.0001 0.0140 1.3985 0.1825 0.0015 1.3583 0.2122 0.0000 0.0000 0.0151 0.0003 0.0009 0.0000 0.0069 0.0000 0.0000 0.0261 0.1590 0.0378 0.2288 0.0000 0.0000 3.6417 diff --git a/rLPJGUESS/inst/extdata/outputsForTests/run_npatch/outDirectory/maet.out b/rLPJGUESS/inst/extdata/outputsForTests/run_npatch/outDirectory/maet.out deleted file mode 100644 index 6af19de..0000000 --- a/rLPJGUESS/inst/extdata/outputsForTests/run_npatch/outDirectory/maet.out +++ /dev/null @@ -1,63 +0,0 @@ - Lon Lat Year Jan Feb Mar Apr May Jun Jul Aug Sep Oct Nov Dec - 10.45 51.08 1951 0.003 0.013 2.138 23.246 46.806 57.277 67.535 52.082 35.327 15.427 2.411 0.003 - 10.45 51.08 1952 0.001 0.003 0.774 29.429 52.396 66.051 64.047 39.885 19.780 9.583 0.673 0.001 - 10.45 51.08 1953 0.001 0.191 8.040 42.125 56.337 50.046 64.113 56.341 21.560 13.846 0.904 0.002 - 10.45 51.08 1954 0.001 0.001 1.902 17.102 57.541 52.615 41.726 46.667 30.069 14.084 3.254 0.001 - 10.45 51.08 1955 0.000 0.001 1.557 19.258 51.016 55.243 48.037 41.942 30.340 13.495 2.385 0.001 - 10.45 51.08 1956 0.005 0.000 0.965 12.583 57.106 42.547 52.376 45.303 32.104 12.742 1.407 0.001 - 10.45 51.08 1957 0.012 0.161 10.823 31.412 47.361 66.524 56.699 47.834 25.125 12.698 0.067 0.000 - 10.45 51.08 1958 0.000 0.652 1.458 13.512 48.959 53.744 63.268 55.978 34.985 13.967 1.529 0.000 - 10.45 51.08 1959 0.000 0.035 7.514 32.440 52.452 61.972 49.757 43.786 16.511 8.050 0.100 0.000 - 10.45 51.08 1960 0.000 0.006 2.498 17.683 43.546 66.489 52.256 41.329 24.724 10.108 2.408 0.000 - 10.45 51.08 1961 0.000 0.199 8.093 23.705 37.247 62.008 53.538 47.869 37.093 15.417 0.012 0.002 - 10.45 51.08 1962 0.001 0.007 0.372 15.137 36.226 58.115 50.423 40.528 27.154 6.940 2.137 0.000 - 10.45 51.08 1963 0.000 0.000 0.744 15.648 49.210 52.696 53.546 41.534 30.764 11.504 2.937 0.000 - 10.45 51.08 1964 0.000 0.000 0.056 14.860 54.946 72.462 57.152 35.933 23.453 8.578 0.512 0.002 - 10.45 51.08 1965 0.023 0.000 0.672 14.034 40.790 53.353 49.464 50.146 27.942 13.829 1.113 0.000 - 10.45 51.08 1966 0.001 1.603 4.482 20.980 55.231 59.808 45.385 45.021 27.451 13.559 0.289 0.000 - 10.45 51.08 1967 0.000 0.604 7.195 16.587 51.652 49.916 70.790 44.405 24.598 14.838 2.367 0.000 - 10.45 51.08 1968 0.000 0.001 3.153 23.223 36.152 48.773 49.882 36.087 20.851 9.393 1.345 0.000 - 10.45 51.08 1969 0.000 0.000 0.000 7.323 38.999 47.754 56.932 33.890 26.319 11.902 3.079 0.000 - 10.45 51.08 1970 0.000 0.000 0.425 8.479 42.241 69.857 62.526 45.832 36.223 9.203 2.898 0.112 - 10.45 51.08 1971 0.023 0.062 1.097 21.050 53.190 49.496 67.096 47.410 25.154 13.397 2.695 0.028 - 10.45 51.08 1972 0.007 0.053 4.970 19.682 44.092 62.250 55.909 45.279 26.611 13.050 2.823 0.020 - 10.45 51.08 1973 0.003 0.005 1.745 8.548 49.266 60.441 53.267 40.779 30.272 12.126 2.162 0.009 - 10.45 51.08 1974 0.027 0.555 7.936 30.351 42.409 51.387 51.164 49.509 33.735 6.928 0.014 0.014 - 10.45 51.08 1975 0.010 0.021 1.328 15.531 48.406 50.827 68.107 56.417 33.543 10.271 2.004 0.002 - 10.45 51.08 1976 0.005 0.011 0.657 19.544 57.169 70.265 50.053 33.127 13.646 13.201 2.492 0.002 - 10.45 51.08 1977 0.004 0.109 5.559 14.165 40.358 32.468 42.538 27.197 20.218 10.063 1.455 0.002 - 10.45 51.08 1978 0.002 0.067 3.421 15.249 31.471 42.390 42.431 35.768 17.960 10.356 1.186 0.004 - 10.45 51.08 1979 0.016 0.001 0.495 11.141 47.221 58.288 48.207 48.848 29.587 13.969 1.204 0.071 - 10.45 51.08 1980 0.024 0.139 1.125 11.988 49.993 55.027 45.385 47.565 29.791 11.522 0.327 0.085 - 10.45 51.08 1981 0.063 0.035 9.578 27.349 47.999 53.090 50.283 45.522 30.764 11.733 0.312 0.001 - 10.45 51.08 1982 0.005 0.012 0.787 17.590 48.715 53.584 54.722 39.170 17.702 9.359 4.361 0.007 - 10.45 51.08 1983 0.010 0.040 3.760 21.777 37.921 61.378 64.455 47.857 26.399 12.327 1.519 0.004 - 10.45 51.08 1984 0.005 0.005 0.231 12.615 30.268 50.573 54.602 48.881 23.507 12.271 2.985 0.004 - 10.45 51.08 1985 0.003 0.022 0.513 21.725 51.644 49.408 67.532 51.829 28.587 10.515 1.171 0.023 - 10.45 51.08 1986 0.013 0.002 1.108 9.042 53.712 63.775 62.563 49.833 27.250 16.494 4.132 0.005 - 10.45 51.08 1987 0.001 0.003 0.433 23.770 42.884 43.546 64.425 45.592 30.474 14.510 1.700 0.002 - 10.45 51.08 1988 0.004 0.008 0.731 19.944 61.036 48.089 67.722 52.172 20.707 8.599 2.005 0.002 - 10.45 51.08 1989 0.016 0.094 6.466 15.452 52.181 49.468 25.938 23.494 16.681 12.035 0.972 0.002 - 10.45 51.08 1990 0.003 1.597 12.038 19.756 51.637 38.587 43.486 25.411 17.978 10.352 0.005 0.001 - 10.45 51.08 1991 0.009 0.043 7.921 27.567 37.510 51.186 35.719 52.244 22.626 10.637 1.021 0.004 - 10.45 51.08 1992 0.006 0.132 3.670 20.859 58.234 49.297 61.009 39.474 29.440 7.422 0.461 0.009 - 10.45 51.08 1993 0.026 0.109 6.410 33.852 49.148 55.400 54.609 51.178 23.079 10.074 0.256 0.008 - 10.45 51.08 1994 0.006 0.053 6.246 22.702 49.842 61.937 74.946 48.671 27.932 11.059 2.516 0.022 - 10.45 51.08 1995 0.001 0.146 3.158 19.596 46.608 44.371 69.031 61.092 21.693 15.232 0.994 0.000 - 10.45 51.08 1996 0.000 0.001 0.173 17.180 33.367 60.896 52.001 44.962 19.023 10.785 2.191 0.000 - 10.45 51.08 1997 0.000 0.395 8.023 21.497 50.340 57.203 46.233 58.778 35.888 9.352 1.164 0.000 - 10.45 51.08 1998 0.001 1.500 7.831 27.752 59.194 59.716 47.739 35.613 22.790 6.788 0.001 0.000 - 10.45 51.08 1999 0.004 0.181 4.757 25.655 58.006 57.285 63.408 52.260 40.579 11.212 1.567 0.000 - 10.45 51.08 2000 0.000 0.296 5.358 30.797 65.498 59.308 40.260 46.792 26.957 13.813 1.384 0.001 - 10.45 51.08 2001 0.000 0.066 2.613 19.053 65.587 49.317 70.266 44.435 20.417 16.741 1.583 0.000 - 10.45 51.08 2002 0.033 2.048 10.102 26.041 46.943 60.972 51.342 48.476 30.783 7.550 0.001 0.000 - 10.45 51.08 2003 0.000 0.000 4.192 26.199 52.949 78.645 57.706 33.491 33.966 9.239 0.828 0.000 - 10.45 51.08 2004 0.000 0.350 8.846 33.466 43.429 56.525 56.853 45.718 21.203 15.925 0.001 0.000 - 10.45 51.08 2005 0.001 0.000 4.622 30.084 54.916 55.749 50.677 44.077 36.185 17.720 2.681 0.000 - 10.45 51.08 2006 0.000 0.001 1.130 21.054 55.964 68.109 71.630 36.530 40.120 14.633 2.795 0.001 - 10.45 51.08 2007 0.001 0.025 3.463 40.967 53.951 62.185 56.004 50.044 26.262 12.348 0.976 0.000 - 10.45 51.08 2008 0.018 1.506 7.012 20.812 60.243 64.297 59.444 41.277 19.005 12.181 0.615 0.000 - 10.45 51.08 2009 0.000 0.001 0.667 33.287 50.315 45.614 58.425 56.838 27.725 8.550 0.897 0.000 - 10.45 51.08 2010 0.000 0.001 4.974 32.478 32.226 66.664 63.586 37.507 25.493 13.278 1.428 0.000 - 10.45 51.08 2011 0.001 0.144 8.646 40.198 52.997 53.900 50.415 43.301 34.296 13.449 0.419 0.001 - 10.45 51.08 2012 0.001 0.006 10.687 22.696 56.422 45.100 54.121 51.725 21.635 13.643 1.163 0.000 diff --git a/rLPJGUESS/inst/extdata/outputsForTests/run_npatch/outDirectory/mevap.out b/rLPJGUESS/inst/extdata/outputsForTests/run_npatch/outDirectory/mevap.out deleted file mode 100644 index fc5b79e..0000000 --- a/rLPJGUESS/inst/extdata/outputsForTests/run_npatch/outDirectory/mevap.out +++ /dev/null @@ -1,63 +0,0 @@ - Lon Lat Year Jan Feb Mar Apr May Jun Jul Aug Sep Oct Nov Dec - 10.45 51.08 1951 6.019 12.597 21.598 17.603 5.644 27.984 14.704 18.284 8.340 3.057 4.971 6.169 - 10.45 51.08 1952 4.337 3.312 26.814 27.998 19.000 10.796 3.851 1.988 11.416 8.672 6.562 3.899 - 10.45 51.08 1953 0.146 5.228 22.313 7.650 5.770 13.587 17.858 8.977 2.662 1.938 3.190 2.262 - 10.45 51.08 1954 4.243 9.859 20.186 23.034 10.136 6.963 17.752 16.937 8.539 7.074 3.367 4.905 - 10.45 51.08 1955 0.726 6.024 9.964 26.932 9.501 10.198 18.453 20.948 9.210 4.048 3.893 5.601 - 10.45 51.08 1956 6.430 0.000 21.817 26.894 16.899 21.041 28.547 16.003 7.172 4.677 3.797 4.002 - 10.45 51.08 1957 6.827 12.224 19.126 11.370 9.241 13.819 17.514 15.141 7.342 8.486 9.333 4.879 - 10.45 51.08 1958 7.565 10.860 9.861 24.851 18.926 20.074 20.791 15.041 6.956 6.592 5.230 5.810 - 10.45 51.08 1959 7.743 9.691 14.005 12.508 10.740 15.576 2.930 12.282 3.732 0.800 7.311 4.518 - 10.45 51.08 1960 4.823 11.290 16.920 14.090 16.504 12.075 6.276 11.068 10.392 7.290 5.187 2.123 - 10.45 51.08 1961 1.414 15.308 14.695 19.134 20.475 23.799 4.550 7.179 3.838 0.927 2.102 4.067 - 10.45 51.08 1962 7.480 11.944 9.437 26.114 12.406 6.101 11.121 5.979 6.184 1.912 0.562 1.570 - 10.45 51.08 1963 0.000 0.000 19.895 26.321 11.555 13.422 17.369 20.144 7.407 5.889 4.527 4.429 - 10.45 51.08 1964 3.408 12.005 14.591 25.577 23.919 13.344 10.059 9.520 4.802 2.785 3.051 2.796 - 10.45 51.08 1965 5.497 0.000 14.333 22.617 21.074 21.732 12.787 12.617 7.805 2.940 1.127 5.332 - 10.45 51.08 1966 4.396 9.815 17.403 21.073 12.216 15.446 28.662 16.572 10.418 4.001 7.551 5.711 - 10.45 51.08 1967 6.599 11.171 20.501 18.443 12.403 23.686 14.953 11.194 13.006 7.017 3.703 4.262 - 10.45 51.08 1968 4.603 11.788 25.703 17.078 17.918 15.870 11.798 11.820 12.243 10.013 5.964 3.150 - 10.45 51.08 1969 5.298 3.132 0.000 31.294 27.867 26.370 12.355 7.982 14.739 4.133 2.416 1.596 - 10.45 51.08 1970 0.000 2.544 14.052 33.085 18.214 7.626 6.833 16.824 6.744 3.822 2.934 4.737 - 10.45 51.08 1971 3.377 9.037 13.930 14.320 9.811 9.664 4.362 1.716 2.017 2.701 2.985 5.454 - 10.45 51.08 1972 3.687 7.846 25.753 15.474 12.844 16.339 13.487 19.847 5.856 2.321 3.248 5.341 - 10.45 51.08 1973 5.350 9.824 22.633 18.073 14.156 5.880 5.419 5.289 6.105 5.938 5.717 5.528 - 10.45 51.08 1974 7.002 10.122 20.124 10.646 9.711 13.075 17.074 8.866 5.591 3.502 8.951 6.690 - 10.45 51.08 1975 7.998 11.043 21.054 28.489 14.779 10.139 10.495 3.742 4.649 2.359 2.691 2.677 - 10.45 51.08 1976 6.643 10.032 14.826 13.786 6.717 12.838 2.054 2.760 1.241 2.732 2.125 3.063 - 10.45 51.08 1977 3.938 9.686 21.118 20.073 13.511 19.747 25.583 25.668 14.351 7.526 8.525 5.676 - 10.45 51.08 1978 6.045 5.442 18.122 14.120 15.442 8.907 14.142 14.287 9.336 8.315 4.244 3.783 - 10.45 51.08 1979 0.000 0.000 17.725 29.279 16.930 8.423 11.690 6.550 4.162 2.394 4.607 5.653 - 10.45 51.08 1980 5.079 11.124 11.903 18.950 15.707 7.727 8.474 3.422 3.388 3.575 3.409 3.428 - 10.45 51.08 1981 2.319 8.537 22.777 10.970 18.386 15.032 5.708 13.490 5.538 7.528 9.156 1.919 - 10.45 51.08 1982 5.868 11.192 17.068 12.943 13.562 4.571 6.605 5.154 1.051 2.972 1.662 2.154 - 10.45 51.08 1983 3.826 5.745 13.780 33.170 14.881 11.976 5.162 9.617 5.633 2.535 0.945 1.265 - 10.45 51.08 1984 3.232 8.937 17.574 33.313 19.978 15.650 10.552 13.253 8.523 6.613 4.710 5.726 - 10.45 51.08 1985 2.431 10.135 15.128 17.608 6.563 8.735 8.848 7.416 4.639 1.151 0.356 2.841 - 10.45 51.08 1986 6.362 3.675 21.584 30.379 18.409 14.485 5.505 7.444 7.907 5.137 3.373 3.865 - 10.45 51.08 1987 1.780 4.269 7.223 23.576 11.142 20.983 12.718 14.390 9.005 5.565 3.095 5.479 - 10.45 51.08 1988 7.783 8.233 10.995 28.143 6.574 6.704 16.046 5.871 2.752 1.310 1.038 4.551 - 10.45 51.08 1989 8.133 9.328 23.316 13.113 16.210 16.834 10.080 9.244 6.362 6.203 8.533 6.144 - 10.45 51.08 1990 7.340 13.612 18.459 12.796 11.082 18.734 14.706 5.984 8.130 5.220 3.733 4.121 - 10.45 51.08 1991 5.754 7.433 14.428 7.171 5.967 6.820 5.803 13.714 2.504 1.527 1.149 1.795 - 10.45 51.08 1992 4.569 8.249 19.500 24.181 8.472 10.227 16.934 6.424 7.809 2.731 6.063 5.941 - 10.45 51.08 1993 7.102 3.555 18.806 12.431 9.258 20.244 17.846 10.611 6.719 4.380 5.288 5.784 - 10.45 51.08 1994 7.771 9.798 24.676 23.503 15.232 14.875 19.281 11.414 11.032 4.911 5.753 6.346 - 10.45 51.08 1995 7.438 14.327 17.356 18.653 15.059 21.390 22.124 13.104 11.414 8.116 4.049 3.082 - 10.45 51.08 1996 4.355 10.213 15.090 19.511 17.860 15.950 18.760 17.586 9.102 5.555 4.239 4.852 - 10.45 51.08 1997 5.992 14.757 22.914 21.223 11.336 5.075 17.237 12.102 5.799 3.900 4.229 4.058 - 10.45 51.08 1998 7.282 10.298 15.712 10.582 12.482 11.109 11.805 5.725 10.866 9.641 9.530 5.441 - 10.45 51.08 1999 7.010 9.872 19.278 16.985 9.437 16.453 20.641 8.614 4.898 1.919 4.978 5.506 - 10.45 51.08 2000 7.216 15.359 24.840 20.878 8.690 6.483 7.506 10.226 9.857 5.923 4.587 3.416 - 10.45 51.08 2001 3.937 8.649 16.106 24.855 14.547 11.768 20.970 3.980 4.888 4.817 5.568 5.247 - 10.45 51.08 2002 7.548 11.970 18.783 14.684 16.422 17.586 15.462 15.775 7.115 10.591 10.784 4.256 - 10.45 51.08 2003 7.451 11.117 23.571 12.803 8.782 20.920 5.670 2.094 5.543 3.816 4.625 5.227 - 10.45 51.08 2004 6.293 10.813 14.975 12.625 18.231 8.495 13.746 4.841 3.240 2.684 3.916 4.607 - 10.45 51.08 2005 6.787 9.888 18.346 18.287 10.739 5.350 10.245 13.737 10.084 6.187 3.234 3.103 - 10.45 51.08 2006 3.887 6.268 12.532 23.962 13.538 17.502 17.647 12.187 10.914 5.280 3.749 3.506 - 10.45 51.08 2007 6.186 10.840 22.432 16.511 10.771 22.233 19.776 21.066 7.969 6.615 6.074 5.495 - 10.45 51.08 2008 7.658 10.383 18.091 24.582 10.792 8.839 10.920 3.524 3.931 4.880 6.177 5.237 - 10.45 51.08 2009 5.662 9.212 20.842 20.625 17.984 11.603 14.433 6.887 6.549 4.993 8.771 5.531 - 10.45 51.08 2010 0.000 2.929 22.894 13.539 16.108 10.096 16.676 21.529 8.808 7.986 7.549 0.000 - 10.45 51.08 2011 4.892 10.746 20.139 11.129 3.596 6.139 16.737 11.222 9.780 4.649 3.247 2.987 - 10.45 51.08 2012 7.147 9.404 16.401 7.287 8.561 17.531 20.071 10.648 4.799 3.329 2.889 5.314 diff --git a/rLPJGUESS/inst/extdata/outputsForTests/run_npatch/outDirectory/mgpp.out b/rLPJGUESS/inst/extdata/outputsForTests/run_npatch/outDirectory/mgpp.out deleted file mode 100644 index 2d9438a..0000000 --- a/rLPJGUESS/inst/extdata/outputsForTests/run_npatch/outDirectory/mgpp.out +++ /dev/null @@ -1,63 +0,0 @@ - Lon Lat Year Jan Feb Mar Apr May Jun Jul Aug Sep Oct Nov Dec - 10.45 51.08 1951 0.000 0.001 0.005 0.057 0.179 0.221 0.218 0.176 0.131 0.067 0.017 0.000 - 10.45 51.08 1952 0.000 0.000 0.002 0.091 0.210 0.226 0.189 0.136 0.102 0.054 0.008 0.000 - 10.45 51.08 1953 0.000 0.001 0.019 0.143 0.187 0.185 0.204 0.187 0.097 0.068 0.005 0.000 - 10.45 51.08 1954 0.000 0.000 0.005 0.042 0.196 0.187 0.175 0.167 0.116 0.072 0.017 0.000 - 10.45 51.08 1955 0.000 0.000 0.003 0.043 0.189 0.204 0.174 0.152 0.123 0.065 0.012 0.000 - 10.45 51.08 1956 0.000 0.000 0.002 0.031 0.190 0.178 0.191 0.178 0.129 0.063 0.008 0.000 - 10.45 51.08 1957 0.000 0.001 0.031 0.104 0.180 0.213 0.172 0.173 0.111 0.064 0.001 0.000 - 10.45 51.08 1958 0.000 0.002 0.003 0.033 0.175 0.196 0.210 0.189 0.134 0.068 0.010 0.000 - 10.45 51.08 1959 0.000 0.000 0.019 0.106 0.200 0.206 0.156 0.149 0.086 0.049 0.001 0.000 - 10.45 51.08 1960 0.000 0.000 0.005 0.046 0.164 0.218 0.199 0.158 0.112 0.058 0.016 0.000 - 10.45 51.08 1961 0.000 0.001 0.020 0.096 0.160 0.208 0.179 0.168 0.126 0.071 0.000 0.000 - 10.45 51.08 1962 0.000 0.000 0.001 0.036 0.148 0.206 0.191 0.156 0.118 0.040 0.010 0.000 - 10.45 51.08 1963 0.000 0.000 0.001 0.045 0.180 0.200 0.184 0.162 0.126 0.059 0.022 0.000 - 10.45 51.08 1964 0.000 0.000 0.000 0.044 0.206 0.236 0.194 0.145 0.108 0.045 0.003 0.000 - 10.45 51.08 1965 0.000 0.000 0.001 0.034 0.155 0.203 0.188 0.193 0.127 0.065 0.007 0.000 - 10.45 51.08 1966 0.000 0.004 0.010 0.072 0.214 0.208 0.185 0.173 0.118 0.067 0.002 0.000 - 10.45 51.08 1967 0.000 0.002 0.016 0.044 0.184 0.196 0.225 0.166 0.112 0.075 0.013 0.000 - 10.45 51.08 1968 0.000 0.000 0.007 0.064 0.148 0.173 0.171 0.130 0.091 0.051 0.007 0.000 - 10.45 51.08 1969 0.000 0.000 0.000 0.018 0.143 0.174 0.172 0.129 0.108 0.060 0.019 0.000 - 10.45 51.08 1970 0.000 0.000 0.001 0.022 0.153 0.220 0.206 0.162 0.132 0.047 0.018 0.001 - 10.45 51.08 1971 0.000 0.000 0.002 0.056 0.170 0.184 0.213 0.151 0.105 0.060 0.014 0.000 - 10.45 51.08 1972 0.000 0.000 0.011 0.056 0.165 0.226 0.183 0.167 0.110 0.057 0.016 0.000 - 10.45 51.08 1973 0.000 0.000 0.005 0.020 0.172 0.212 0.186 0.148 0.119 0.060 0.012 0.000 - 10.45 51.08 1974 0.001 0.002 0.022 0.099 0.180 0.211 0.201 0.172 0.136 0.038 0.001 0.001 - 10.45 51.08 1975 0.001 0.000 0.004 0.040 0.183 0.201 0.217 0.181 0.129 0.051 0.011 0.000 - 10.45 51.08 1976 0.000 0.000 0.002 0.048 0.201 0.229 0.156 0.137 0.073 0.064 0.015 0.000 - 10.45 51.08 1977 0.000 0.001 0.017 0.043 0.169 0.138 0.163 0.120 0.089 0.055 0.013 0.000 - 10.45 51.08 1978 0.000 0.000 0.008 0.041 0.126 0.164 0.165 0.140 0.089 0.053 0.005 0.000 - 10.45 51.08 1979 0.000 0.000 0.003 0.032 0.150 0.199 0.183 0.173 0.118 0.059 0.008 0.001 - 10.45 51.08 1980 0.000 0.001 0.003 0.032 0.161 0.206 0.169 0.165 0.119 0.056 0.001 0.000 - 10.45 51.08 1981 0.000 0.000 0.028 0.090 0.175 0.187 0.173 0.161 0.123 0.056 0.002 0.000 - 10.45 51.08 1982 0.000 0.001 0.004 0.045 0.161 0.192 0.184 0.139 0.082 0.057 0.026 0.000 - 10.45 51.08 1983 0.001 0.000 0.010 0.072 0.172 0.217 0.206 0.166 0.120 0.060 0.010 0.000 - 10.45 51.08 1984 0.000 0.000 0.002 0.033 0.124 0.199 0.195 0.173 0.105 0.071 0.014 0.000 - 10.45 51.08 1985 0.000 0.000 0.002 0.059 0.180 0.197 0.227 0.188 0.119 0.049 0.007 0.001 - 10.45 51.08 1986 0.000 0.000 0.004 0.025 0.191 0.212 0.208 0.175 0.124 0.080 0.025 0.001 - 10.45 51.08 1987 0.000 0.000 0.001 0.063 0.172 0.189 0.217 0.174 0.126 0.069 0.013 0.000 - 10.45 51.08 1988 0.001 0.001 0.002 0.050 0.213 0.188 0.224 0.173 0.095 0.050 0.011 0.000 - 10.45 51.08 1989 0.000 0.001 0.016 0.053 0.198 0.189 0.117 0.108 0.081 0.064 0.009 0.000 - 10.45 51.08 1990 0.000 0.005 0.040 0.075 0.215 0.163 0.173 0.108 0.093 0.054 0.001 0.000 - 10.45 51.08 1991 0.000 0.000 0.022 0.089 0.147 0.203 0.130 0.170 0.094 0.049 0.005 0.000 - 10.45 51.08 1992 0.000 0.001 0.009 0.059 0.208 0.184 0.200 0.132 0.125 0.036 0.002 0.000 - 10.45 51.08 1993 0.000 0.000 0.016 0.105 0.198 0.204 0.198 0.183 0.107 0.049 0.001 0.000 - 10.45 51.08 1994 0.000 0.000 0.017 0.072 0.209 0.220 0.212 0.172 0.126 0.053 0.015 0.000 - 10.45 51.08 1995 0.000 0.001 0.007 0.063 0.191 0.187 0.217 0.202 0.110 0.077 0.007 0.000 - 10.45 51.08 1996 0.000 0.000 0.001 0.052 0.151 0.219 0.212 0.178 0.097 0.063 0.016 0.000 - 10.45 51.08 1997 0.000 0.002 0.023 0.060 0.197 0.217 0.195 0.192 0.150 0.051 0.007 0.000 - 10.45 51.08 1998 0.000 0.005 0.023 0.111 0.231 0.220 0.191 0.144 0.115 0.046 0.000 0.000 - 10.45 51.08 1999 0.000 0.000 0.013 0.089 0.232 0.232 0.212 0.190 0.151 0.059 0.011 0.000 - 10.45 51.08 2000 0.000 0.001 0.015 0.096 0.241 0.207 0.177 0.179 0.125 0.077 0.011 0.000 - 10.45 51.08 2001 0.000 0.000 0.008 0.063 0.246 0.209 0.239 0.159 0.108 0.087 0.011 0.000 - 10.45 51.08 2002 0.000 0.008 0.035 0.099 0.200 0.224 0.190 0.176 0.133 0.046 0.000 0.000 - 10.45 51.08 2003 0.000 0.000 0.010 0.075 0.215 0.264 0.199 0.123 0.147 0.047 0.006 0.000 - 10.45 51.08 2004 0.000 0.001 0.026 0.128 0.202 0.227 0.224 0.167 0.108 0.082 0.000 0.000 - 10.45 51.08 2005 0.000 0.000 0.013 0.107 0.207 0.214 0.196 0.177 0.150 0.095 0.019 0.000 - 10.45 51.08 2006 0.000 0.000 0.003 0.067 0.232 0.242 0.212 0.168 0.157 0.086 0.021 0.000 - 10.45 51.08 2007 0.000 0.000 0.011 0.131 0.232 0.237 0.215 0.202 0.132 0.066 0.009 0.000 - 10.45 51.08 2008 0.000 0.005 0.022 0.076 0.243 0.242 0.217 0.163 0.099 0.073 0.005 0.000 - 10.45 51.08 2009 0.000 0.000 0.002 0.123 0.224 0.205 0.217 0.200 0.131 0.052 0.009 0.000 - 10.45 51.08 2010 0.000 0.000 0.016 0.112 0.162 0.248 0.211 0.167 0.127 0.069 0.011 0.000 - 10.45 51.08 2011 0.000 0.001 0.021 0.163 0.224 0.220 0.211 0.174 0.151 0.074 0.004 0.000 - 10.45 51.08 2012 0.000 0.000 0.029 0.083 0.228 0.205 0.215 0.195 0.114 0.074 0.008 0.000 diff --git a/rLPJGUESS/inst/extdata/outputsForTests/run_npatch/outDirectory/mintercep.out b/rLPJGUESS/inst/extdata/outputsForTests/run_npatch/outDirectory/mintercep.out deleted file mode 100644 index 8e1494f..0000000 --- a/rLPJGUESS/inst/extdata/outputsForTests/run_npatch/outDirectory/mintercep.out +++ /dev/null @@ -1,63 +0,0 @@ - Lon Lat Year Jan Feb Mar Apr May Jun Jul Aug Sep Oct Nov Dec - 10.45 51.08 1951 0.021 0.031 0.173 0.488 2.165 10.239 2.715 4.967 2.604 0.839 1.151 0.017 - 10.45 51.08 1952 0.030 0.021 0.283 1.542 4.812 2.521 1.238 2.562 6.710 3.996 2.206 0.019 - 10.45 51.08 1953 0.021 0.020 0.040 0.794 3.036 6.293 3.340 2.765 1.311 1.614 0.005 0.015 - 10.45 51.08 1954 0.020 0.016 0.043 0.802 1.414 2.817 6.883 4.512 2.723 2.545 0.757 0.018 - 10.45 51.08 1955 0.012 0.021 0.037 0.596 2.217 3.600 6.070 3.426 2.742 1.429 0.156 0.017 - 10.45 51.08 1956 0.011 0.009 0.015 1.035 1.872 7.428 9.263 4.503 1.282 2.763 0.983 0.009 - 10.45 51.08 1957 0.022 0.061 0.594 0.817 3.201 3.816 5.344 2.650 3.801 1.049 0.007 0.007 - 10.45 51.08 1958 0.009 0.322 0.711 0.611 4.378 4.071 4.106 4.579 2.986 2.203 1.127 0.007 - 10.45 51.08 1959 0.005 0.002 0.260 1.742 2.600 2.606 0.805 3.251 0.028 1.274 0.016 0.003 - 10.45 51.08 1960 0.006 0.003 0.068 0.822 3.343 1.471 2.410 3.702 2.636 3.305 1.026 0.005 - 10.45 51.08 1961 0.003 0.004 0.381 4.256 5.754 4.263 2.396 2.309 1.187 0.736 0.005 0.005 - 10.45 51.08 1962 0.003 0.007 0.029 0.428 2.560 0.809 3.637 1.646 1.641 0.402 0.186 0.003 - 10.45 51.08 1963 0.002 0.001 0.052 0.541 1.477 5.078 1.804 6.011 1.980 1.395 1.782 0.001 - 10.45 51.08 1964 0.001 0.003 0.011 1.080 3.411 2.276 2.316 2.727 1.363 1.267 0.091 0.008 - 10.45 51.08 1965 0.019 0.003 0.012 0.888 1.259 4.795 3.218 2.248 2.192 0.429 0.840 0.004 - 10.45 51.08 1966 0.004 0.059 0.321 1.490 2.678 4.758 4.743 3.966 0.983 2.384 0.332 0.004 - 10.45 51.08 1967 0.003 0.027 0.406 0.464 2.543 4.808 2.346 3.421 3.291 1.581 0.361 0.003 - 10.45 51.08 1968 0.001 0.003 0.020 1.842 1.677 2.884 1.793 2.558 2.517 1.763 0.446 0.000 - 10.45 51.08 1969 0.001 0.001 0.001 0.588 3.217 4.490 0.448 3.628 1.619 0.647 0.816 0.000 - 10.45 51.08 1970 0.006 0.022 0.021 0.365 3.212 2.398 2.072 5.878 0.973 2.784 1.472 0.127 - 10.45 51.08 1971 0.010 0.025 0.049 1.049 1.917 3.751 0.620 1.983 1.375 1.412 0.852 0.015 - 10.45 51.08 1972 0.010 0.003 0.117 0.685 3.165 3.960 5.392 4.869 1.288 1.050 0.692 0.003 - 10.45 51.08 1973 0.019 0.043 0.021 0.290 1.786 2.358 3.107 1.508 2.805 2.389 0.622 0.019 - 10.45 51.08 1974 0.022 0.148 0.306 0.590 3.098 4.893 3.685 2.973 1.484 3.163 0.023 0.049 - 10.45 51.08 1975 0.019 0.027 0.159 0.470 2.604 4.479 1.699 2.481 1.822 1.844 0.229 0.014 - 10.45 51.08 1976 0.057 0.017 0.048 0.450 2.116 3.274 1.616 2.015 2.170 1.309 0.958 0.023 - 10.45 51.08 1977 0.028 0.051 0.590 0.535 1.334 4.197 2.991 5.303 1.520 1.443 1.168 0.031 - 10.45 51.08 1978 0.018 0.030 0.128 0.281 2.576 1.167 2.537 2.943 2.938 1.087 0.005 0.033 - 10.45 51.08 1979 0.060 0.045 0.184 0.518 1.694 3.522 3.226 1.240 2.503 0.400 1.463 0.100 - 10.45 51.08 1980 0.065 0.050 0.070 0.845 1.258 3.336 2.962 0.944 2.595 1.390 0.291 0.092 - 10.45 51.08 1981 0.149 0.051 0.519 1.290 3.910 2.780 1.636 4.268 1.853 1.832 0.093 0.049 - 10.45 51.08 1982 0.038 0.010 0.061 0.401 1.284 2.236 2.834 0.884 0.559 2.158 0.615 0.032 - 10.45 51.08 1983 0.065 0.047 0.300 2.271 5.178 1.367 1.546 2.637 2.691 0.232 0.137 0.028 - 10.45 51.08 1984 0.063 0.074 0.009 0.251 5.925 2.687 3.383 3.735 3.007 3.052 0.149 0.024 - 10.45 51.08 1985 0.033 0.026 0.068 0.471 2.049 3.756 2.743 2.798 1.152 0.200 0.577 0.051 - 10.45 51.08 1986 0.056 0.032 0.107 0.609 4.682 2.874 2.764 3.447 2.849 1.346 0.347 0.039 - 10.45 51.08 1987 0.044 0.051 0.072 0.212 3.625 7.730 4.335 4.125 4.568 1.136 1.587 0.022 - 10.45 51.08 1988 0.030 0.052 0.151 0.387 1.398 3.822 4.052 1.187 1.500 0.910 1.072 0.043 - 10.45 51.08 1989 0.019 0.027 0.230 1.469 1.530 2.704 2.225 1.168 1.943 1.264 1.024 0.027 - 10.45 51.08 1990 0.014 0.214 0.523 1.815 0.627 3.885 1.039 1.884 2.285 0.443 0.046 0.023 - 10.45 51.08 1991 0.023 0.017 0.319 0.533 1.620 3.314 1.025 3.569 0.930 0.810 0.308 0.019 - 10.45 51.08 1992 0.010 0.016 0.604 0.310 1.161 3.665 3.660 1.619 1.505 2.126 0.219 0.017 - 10.45 51.08 1993 0.039 0.029 0.114 0.398 3.846 3.145 4.491 2.080 2.449 1.852 0.148 0.032 - 10.45 51.08 1994 0.021 0.021 0.421 1.528 4.548 2.430 4.089 4.504 2.295 1.208 0.443 0.022 - 10.45 51.08 1995 0.024 0.057 0.130 1.212 3.896 4.415 5.630 2.195 4.059 0.646 0.602 0.010 - 10.45 51.08 1996 0.001 0.017 0.024 0.673 4.568 3.790 4.495 5.538 1.793 2.339 1.542 0.009 - 10.45 51.08 1997 0.006 0.102 0.905 0.918 2.721 1.794 7.681 2.645 0.735 2.493 0.212 0.015 - 10.45 51.08 1998 0.012 0.103 0.619 2.321 2.515 3.628 4.583 1.746 4.465 3.650 0.024 0.005 - 10.45 51.08 1999 0.011 0.032 0.326 0.921 3.788 4.606 4.617 3.103 1.531 0.897 0.653 0.012 - 10.45 51.08 2000 0.011 0.095 0.759 1.271 1.714 2.569 3.819 3.712 3.930 1.868 0.325 0.006 - 10.45 51.08 2001 0.007 0.020 1.009 1.216 2.133 5.239 4.957 1.205 3.585 1.791 1.028 0.009 - 10.45 51.08 2002 0.010 0.690 1.464 1.673 4.731 4.502 4.885 4.709 2.464 2.310 0.018 0.011 - 10.45 51.08 2003 0.009 0.006 0.045 0.400 3.613 4.970 2.573 1.331 2.914 1.837 0.126 0.006 - 10.45 51.08 2004 0.008 0.028 0.256 1.801 6.088 2.774 4.315 1.909 2.008 0.592 0.011 0.004 - 10.45 51.08 2005 0.007 0.015 0.150 1.347 2.716 2.582 4.655 3.074 3.773 1.122 0.619 0.009 - 10.45 51.08 2006 0.005 0.011 0.088 1.562 2.938 3.969 3.211 5.841 0.576 2.558 1.210 0.005 - 10.45 51.08 2007 0.014 0.019 0.212 0.251 5.668 4.589 6.266 4.739 3.530 0.437 1.069 0.008 - 10.45 51.08 2008 0.019 0.072 0.855 2.123 1.026 3.449 3.402 1.882 2.340 3.014 0.052 0.007 - 10.45 51.08 2009 0.003 0.018 0.055 2.164 4.052 3.396 4.218 0.888 2.989 2.634 1.395 0.013 - 10.45 51.08 2010 0.008 0.008 0.250 0.458 5.443 0.767 6.556 7.244 2.358 0.741 0.525 0.010 - 10.45 51.08 2011 0.008 0.013 0.180 1.228 0.415 4.593 3.875 4.539 1.647 1.903 0.000 0.011 - 10.45 51.08 2012 0.014 0.005 0.035 0.472 2.053 6.283 5.747 2.607 1.672 1.120 0.359 0.012 diff --git a/rLPJGUESS/inst/extdata/outputsForTests/run_npatch/outDirectory/miso.out b/rLPJGUESS/inst/extdata/outputsForTests/run_npatch/outDirectory/miso.out deleted file mode 100644 index 8edc368..0000000 --- a/rLPJGUESS/inst/extdata/outputsForTests/run_npatch/outDirectory/miso.out +++ /dev/null @@ -1,63 +0,0 @@ - Lon Lat Year Jan Feb Mar Apr May Jun Jul Aug Sep Oct Nov Dec - 10.45 51.08 1951 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1952 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1953 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1954 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1955 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1956 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1957 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1958 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1959 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1960 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1961 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1962 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1963 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1964 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1965 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1966 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1967 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1968 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1969 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1970 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1971 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1972 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1973 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1974 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1975 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1976 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1977 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1978 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1979 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1980 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1981 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1982 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1983 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1984 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1985 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1986 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1987 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1988 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1989 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1990 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1991 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1992 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1993 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1994 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1995 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1996 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1997 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1998 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1999 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 2000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 2001 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 2002 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 2003 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 2004 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 2005 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 2006 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 2007 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 2008 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 2009 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 2010 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 2011 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 2012 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 diff --git a/rLPJGUESS/inst/extdata/outputsForTests/run_npatch/outDirectory/mlai.out b/rLPJGUESS/inst/extdata/outputsForTests/run_npatch/outDirectory/mlai.out deleted file mode 100644 index 5dbd03b..0000000 --- a/rLPJGUESS/inst/extdata/outputsForTests/run_npatch/outDirectory/mlai.out +++ /dev/null @@ -1,63 +0,0 @@ - Lon Lat Year Jan Feb Mar Apr May Jun Jul Aug Sep Oct Nov Dec - 10.45 51.08 1951 0.047 0.047 0.219 1.091 3.252 3.631 3.631 3.631 3.631 3.631 2.376 0.047 - 10.45 51.08 1952 0.041 0.041 0.123 1.829 3.718 3.718 3.718 3.718 3.718 3.718 1.426 0.041 - 10.45 51.08 1953 0.032 0.044 0.359 2.450 3.672 3.672 3.672 3.672 3.672 3.672 0.494 0.032 - 10.45 51.08 1954 0.027 0.027 0.122 0.917 2.963 3.629 3.629 3.629 3.629 3.629 2.885 0.027 - 10.45 51.08 1955 0.023 0.023 0.116 0.973 3.322 3.586 3.586 3.586 3.586 3.586 2.280 0.023 - 10.45 51.08 1956 0.020 0.018 0.059 0.743 2.857 3.509 3.509 3.509 3.509 3.509 2.229 0.019 - 10.45 51.08 1957 0.037 0.072 0.758 2.318 3.508 3.523 3.523 3.523 3.523 3.456 0.073 0.015 - 10.45 51.08 1958 0.013 0.210 0.558 0.897 2.962 3.430 3.430 3.430 3.430 3.430 1.868 0.013 - 10.45 51.08 1959 0.010 0.019 0.579 2.202 3.289 3.289 3.289 3.289 3.289 3.267 0.148 0.010 - 10.45 51.08 1960 0.017 0.012 0.272 1.200 2.911 3.408 3.408 3.408 3.408 3.408 2.264 0.058 - 10.45 51.08 1961 0.007 0.022 0.681 2.358 3.355 3.355 3.355 3.355 3.355 3.280 0.060 0.022 - 10.45 51.08 1962 0.007 0.015 0.056 0.704 2.828 3.340 3.340 3.340 3.340 3.340 1.673 0.006 - 10.45 51.08 1963 0.004 0.004 0.060 0.831 2.855 3.275 3.275 3.275 3.275 3.275 2.404 0.005 - 10.45 51.08 1964 0.004 0.004 0.011 0.711 2.981 3.285 3.285 3.285 3.285 3.285 0.770 0.024 - 10.45 51.08 1965 0.042 0.004 0.035 0.765 2.392 3.252 3.252 3.252 3.252 3.252 1.520 0.004 - 10.45 51.08 1966 0.011 0.173 0.635 1.472 3.188 3.246 3.246 3.246 3.246 3.246 0.669 0.004 - 10.45 51.08 1967 0.001 0.093 0.421 0.868 2.332 2.821 2.821 2.821 2.821 2.821 1.619 0.001 - 10.45 51.08 1968 0.001 0.003 0.113 1.378 2.829 2.843 2.843 2.843 2.843 2.843 1.024 0.001 - 10.45 51.08 1969 0.011 0.010 0.010 0.531 2.587 3.130 3.130 3.130 3.130 3.130 2.938 0.018 - 10.45 51.08 1970 0.017 0.017 0.042 0.469 2.638 3.430 3.467 3.501 3.501 3.501 3.501 0.242 - 10.45 51.08 1971 0.029 0.044 0.121 1.065 3.034 3.535 3.269 3.343 3.535 3.535 2.483 0.053 - 10.45 51.08 1972 0.057 0.037 0.238 1.318 2.979 3.382 3.382 3.382 3.382 3.382 2.098 0.046 - 10.45 51.08 1973 0.049 0.047 0.110 0.518 2.442 3.400 3.389 3.378 3.400 3.400 1.836 0.049 - 10.45 51.08 1974 0.060 0.215 0.563 1.990 3.163 3.349 3.349 3.349 3.349 3.349 0.053 0.062 - 10.45 51.08 1975 0.058 0.061 0.203 0.721 2.952 3.538 3.538 3.538 3.538 3.538 1.566 0.058 - 10.45 51.08 1976 0.058 0.058 0.081 0.887 2.442 2.863 2.863 2.863 2.863 2.863 1.928 0.058 - 10.45 51.08 1977 0.054 0.063 0.580 1.197 2.541 2.779 2.779 2.779 2.779 2.779 0.986 0.054 - 10.45 51.08 1978 0.065 0.064 0.334 1.121 2.624 3.138 3.138 3.138 3.138 3.138 1.509 0.108 - 10.45 51.08 1979 0.150 0.063 0.088 0.698 2.394 3.504 3.557 3.557 3.504 3.557 1.578 0.254 - 10.45 51.08 1980 0.189 0.081 0.125 0.812 2.325 3.552 3.583 3.434 3.583 3.583 0.952 0.348 - 10.45 51.08 1981 0.264 0.086 0.675 2.502 3.301 3.388 3.388 3.388 3.388 3.388 0.312 0.076 - 10.45 51.08 1982 0.079 0.078 0.106 0.861 2.445 3.406 3.405 3.405 3.394 3.410 3.236 0.085 - 10.45 51.08 1983 0.087 0.110 0.394 1.306 3.262 3.405 3.405 3.405 3.405 3.405 1.639 0.092 - 10.45 51.08 1984 0.082 0.077 0.086 0.526 2.523 3.505 3.505 3.505 3.505 3.505 2.364 0.084 - 10.45 51.08 1985 0.083 0.078 0.100 1.318 2.996 3.569 3.569 3.569 3.569 3.569 1.357 0.092 - 10.45 51.08 1986 0.105 0.069 0.107 0.513 3.206 3.693 3.693 3.693 3.693 3.693 3.306 0.073 - 10.45 51.08 1987 0.063 0.063 0.078 0.982 3.434 3.796 3.796 3.796 3.796 3.796 2.801 0.063 - 10.45 51.08 1988 0.056 0.057 0.093 0.909 3.414 3.831 3.831 3.831 3.831 3.831 2.698 0.056 - 10.45 51.08 1989 0.049 0.057 0.369 1.542 2.872 3.028 3.028 3.028 3.028 3.028 0.967 0.047 - 10.45 51.08 1990 0.090 0.247 1.335 2.434 3.195 3.202 3.202 3.202 3.202 2.407 0.277 0.042 - 10.45 51.08 1991 0.058 0.039 0.811 2.445 3.446 3.622 3.464 3.685 3.643 3.705 0.982 0.047 - 10.45 51.08 1992 0.046 0.052 0.381 1.069 3.007 3.382 3.434 3.434 3.434 3.434 0.423 0.054 - 10.45 51.08 1993 0.062 0.167 0.617 1.853 3.348 3.405 3.405 3.405 3.405 3.405 0.704 0.048 - 10.45 51.08 1994 0.037 0.036 0.527 1.564 3.441 3.495 3.495 3.495 3.495 3.495 1.252 0.102 - 10.45 51.08 1995 0.027 0.070 0.365 1.362 3.412 3.585 3.585 3.585 3.585 3.585 1.650 0.027 - 10.45 51.08 1996 0.025 0.025 0.040 0.798 3.346 3.726 3.726 3.726 3.726 3.726 2.862 0.025 - 10.45 51.08 1997 0.023 0.077 0.814 1.521 3.405 3.784 3.784 3.784 3.784 3.784 1.151 0.023 - 10.45 51.08 1998 0.022 0.240 1.127 2.740 3.861 3.861 3.861 3.861 3.861 3.198 0.022 0.022 - 10.45 51.08 1999 0.022 0.069 0.445 1.914 3.779 3.881 3.881 3.881 3.881 3.881 1.174 0.020 - 10.45 51.08 2000 0.016 0.087 0.582 1.842 3.966 3.966 3.966 3.966 3.966 3.966 1.065 0.016 - 10.45 51.08 2001 0.016 0.069 0.503 1.631 3.700 3.942 3.942 3.942 3.942 3.942 1.580 0.016 - 10.45 51.08 2002 0.022 0.698 1.564 2.613 3.903 3.929 3.929 3.929 3.929 2.645 0.015 0.015 - 10.45 51.08 2003 0.015 0.015 0.214 1.403 3.814 3.886 3.886 3.886 3.886 3.886 0.531 0.015 - 10.45 51.08 2004 0.015 0.269 0.921 2.303 3.762 3.762 3.762 3.762 3.762 3.574 0.015 0.015 - 10.45 51.08 2005 0.015 0.015 0.275 1.927 3.753 3.780 3.780 3.780 3.780 3.780 1.200 0.015 - 10.45 51.08 2006 0.015 0.015 0.071 1.252 3.527 3.755 3.755 3.755 3.755 3.755 2.259 0.015 - 10.45 51.08 2007 0.014 0.020 0.217 1.852 3.741 3.746 3.746 3.746 3.746 3.746 1.261 0.014 - 10.45 51.08 2008 0.032 0.243 0.891 1.668 3.622 3.821 3.821 3.821 3.821 3.821 0.812 0.015 - 10.45 51.08 2009 0.016 0.016 0.070 1.989 3.759 3.759 3.759 3.759 3.759 3.759 1.263 0.016 - 10.45 51.08 2010 0.016 0.016 0.303 1.887 3.680 3.740 3.740 3.740 3.740 3.740 1.164 0.016 - 10.45 51.08 2011 0.016 0.083 0.496 2.599 3.710 3.710 3.710 3.710 3.710 3.688 0.169 0.015 - 10.45 51.08 2012 0.016 0.017 0.511 1.874 3.729 3.742 3.742 3.742 3.742 3.742 0.939 0.016 diff --git a/rLPJGUESS/inst/extdata/outputsForTests/run_npatch/outDirectory/mmon.out b/rLPJGUESS/inst/extdata/outputsForTests/run_npatch/outDirectory/mmon.out deleted file mode 100644 index 8edc368..0000000 --- a/rLPJGUESS/inst/extdata/outputsForTests/run_npatch/outDirectory/mmon.out +++ /dev/null @@ -1,63 +0,0 @@ - Lon Lat Year Jan Feb Mar Apr May Jun Jul Aug Sep Oct Nov Dec - 10.45 51.08 1951 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1952 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1953 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1954 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1955 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1956 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1957 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1958 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1959 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1960 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1961 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1962 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1963 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1964 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1965 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1966 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1967 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1968 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1969 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1970 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1971 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1972 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1973 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1974 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1975 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1976 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1977 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1978 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1979 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1980 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1981 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1982 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1983 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1984 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1985 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1986 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1987 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1988 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1989 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1990 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1991 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1992 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1993 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1994 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1995 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1996 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1997 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1998 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1999 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 2000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 2001 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 2002 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 2003 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 2004 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 2005 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 2006 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 2007 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 2008 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 2009 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 2010 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 2011 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 2012 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 diff --git a/rLPJGUESS/inst/extdata/outputsForTests/run_npatch/outDirectory/mnee.out b/rLPJGUESS/inst/extdata/outputsForTests/run_npatch/outDirectory/mnee.out deleted file mode 100644 index d8aad6e..0000000 --- a/rLPJGUESS/inst/extdata/outputsForTests/run_npatch/outDirectory/mnee.out +++ /dev/null @@ -1,63 +0,0 @@ - Lon Lat Year Jan Feb Mar Apr May Jun Jul Aug Sep Oct Nov Dec - 10.45 51.08 1951 -0.022 -0.017 -0.015 -0.002 0.049 0.077 0.045 0.025 0.002 0.005 -0.018 -0.018 - 10.45 51.08 1952 -0.016 -0.007 -0.020 0.005 0.077 0.062 -0.010 -0.035 0.018 0.007 -0.013 -0.008 - 10.45 51.08 1953 -0.009 -0.011 -0.018 0.037 0.035 0.029 0.033 0.023 -0.020 -0.015 -0.028 -0.023 - 10.45 51.08 1954 -0.008 -0.004 -0.023 -0.004 0.060 0.013 0.037 0.025 -0.002 0.002 -0.017 -0.020 - 10.45 51.08 1955 -0.007 -0.009 -0.009 -0.004 0.058 0.051 0.015 0.023 0.011 0.000 -0.013 -0.016 - 10.45 51.08 1956 -0.018 -0.001 -0.014 -0.009 0.058 0.045 0.048 0.045 0.018 -0.007 -0.014 -0.019 - 10.45 51.08 1957 -0.011 -0.025 -0.016 0.030 0.063 0.038 -0.009 0.035 0.015 0.006 -0.025 -0.012 - 10.45 51.08 1958 -0.015 -0.020 -0.007 -0.002 0.044 0.055 0.044 0.023 0.002 -0.004 -0.016 -0.017 - 10.45 51.08 1959 -0.016 -0.008 -0.022 0.019 0.061 0.049 -0.038 -0.008 -0.028 -0.020 -0.019 -0.012 - 10.45 51.08 1960 -0.015 -0.009 -0.019 -0.009 0.052 0.051 0.040 0.014 0.006 -0.001 -0.016 -0.013 - 10.45 51.08 1961 -0.008 -0.020 -0.025 0.019 0.062 0.067 0.009 0.021 -0.020 -0.025 -0.027 -0.013 - 10.45 51.08 1962 -0.017 -0.012 -0.007 -0.016 0.046 0.050 0.044 -0.001 0.009 -0.030 -0.014 -0.007 - 10.45 51.08 1963 -0.002 -0.002 -0.015 -0.008 0.055 0.041 0.013 0.021 0.013 -0.000 -0.015 -0.007 - 10.45 51.08 1964 -0.004 -0.009 -0.010 -0.009 0.072 0.044 0.013 -0.007 -0.011 -0.012 -0.023 -0.015 - 10.45 51.08 1965 -0.014 -0.005 -0.012 -0.014 0.051 0.063 0.038 0.048 0.024 -0.003 -0.012 -0.015 - 10.45 51.08 1966 -0.008 -0.015 -0.017 0.011 0.068 0.040 0.057 0.038 0.020 -0.014 -0.015 -0.014 - 10.45 51.08 1967 -0.014 -0.019 -0.019 -0.002 0.051 0.064 0.035 0.007 0.011 -0.009 -0.015 -0.011 - 10.45 51.08 1968 -0.007 -0.013 -0.013 -0.006 0.042 0.025 0.001 -0.014 -0.014 -0.013 -0.018 -0.006 - 10.45 51.08 1969 -0.009 -0.007 -0.005 -0.016 0.034 0.048 -0.002 -0.039 0.014 -0.009 -0.019 -0.004 - 10.45 51.08 1970 -0.004 -0.005 -0.009 -0.012 0.048 0.044 0.024 0.016 0.012 -0.016 -0.017 -0.014 - 10.45 51.08 1971 -0.007 -0.018 -0.012 -0.007 0.024 0.036 0.026 -0.042 -0.008 -0.018 -0.015 -0.018 - 10.45 51.08 1972 -0.008 -0.012 -0.020 -0.002 0.056 0.079 0.016 0.034 0.018 0.004 -0.015 -0.013 - 10.45 51.08 1973 -0.009 -0.014 -0.019 -0.016 0.047 0.036 -0.007 -0.024 -0.012 0.002 -0.012 -0.008 - 10.45 51.08 1974 -0.022 -0.020 -0.009 0.020 0.070 0.075 0.061 0.012 0.009 -0.006 -0.022 -0.022 - 10.45 51.08 1975 -0.029 -0.016 -0.021 -0.001 0.060 0.058 0.028 -0.015 -0.007 -0.018 -0.013 -0.014 - 10.45 51.08 1976 -0.019 -0.007 -0.013 -0.008 0.059 0.064 -0.056 -0.013 -0.033 -0.017 -0.014 -0.012 - 10.45 51.08 1977 -0.009 -0.019 -0.023 0.004 0.050 0.009 0.020 0.007 -0.001 -0.009 -0.021 -0.012 - 10.45 51.08 1978 -0.015 -0.006 -0.021 -0.007 0.030 0.010 0.027 -0.005 -0.001 -0.005 -0.019 -0.011 - 10.45 51.08 1979 -0.003 -0.003 -0.014 -0.007 0.040 0.009 0.032 0.013 -0.006 -0.016 -0.013 -0.021 - 10.45 51.08 1980 -0.006 -0.016 -0.018 -0.010 0.055 0.035 0.026 -0.013 -0.009 -0.013 -0.021 -0.012 - 10.45 51.08 1981 -0.009 -0.008 -0.008 0.013 0.059 0.036 0.001 0.015 0.008 -0.004 -0.021 -0.007 - 10.45 51.08 1982 -0.006 -0.009 -0.020 -0.010 0.036 0.000 -0.012 -0.044 -0.060 -0.025 -0.017 -0.017 - 10.45 51.08 1983 -0.026 -0.009 -0.019 0.017 0.060 0.060 -0.002 -0.007 -0.006 -0.020 -0.019 -0.011 - 10.45 51.08 1984 -0.023 -0.010 -0.012 -0.008 0.036 0.069 0.046 0.022 0.007 0.002 -0.015 -0.013 - 10.45 51.08 1985 -0.003 -0.006 -0.015 -0.007 0.040 0.042 0.044 0.019 -0.002 -0.036 -0.013 -0.020 - 10.45 51.08 1986 -0.010 -0.003 -0.013 -0.009 0.044 0.063 0.015 -0.002 0.030 0.000 -0.010 -0.016 - 10.45 51.08 1987 -0.005 -0.005 -0.006 -0.000 0.060 0.072 0.038 0.040 0.003 0.004 -0.015 -0.012 - 10.45 51.08 1988 -0.026 -0.018 -0.016 -0.006 0.051 0.026 0.044 -0.010 -0.024 -0.031 -0.019 -0.016 - 10.45 51.08 1989 -0.022 -0.017 -0.023 -0.007 0.060 0.038 -0.043 -0.044 -0.031 -0.011 -0.018 -0.013 - 10.45 51.08 1990 -0.015 -0.024 -0.007 0.020 0.071 0.043 0.026 -0.051 -0.002 -0.016 -0.026 -0.010 - 10.45 51.08 1991 -0.019 -0.004 -0.021 0.022 0.055 0.063 -0.047 0.013 -0.032 -0.028 -0.020 -0.010 - 10.45 51.08 1992 -0.017 -0.014 -0.021 0.006 0.058 0.015 0.031 -0.043 0.016 -0.017 -0.020 -0.013 - 10.45 51.08 1993 -0.017 -0.005 -0.009 0.024 0.034 0.062 0.058 0.034 0.016 -0.008 -0.011 -0.012 - 10.45 51.08 1994 -0.020 -0.010 -0.016 0.016 0.068 0.070 0.008 -0.006 0.029 0.003 -0.018 -0.018 - 10.45 51.08 1995 -0.011 -0.023 -0.017 0.007 0.070 0.067 0.033 0.018 0.019 0.004 -0.016 -0.005 - 10.45 51.08 1996 -0.003 -0.004 -0.011 -0.004 0.051 0.058 0.072 0.030 0.020 0.004 -0.014 -0.008 - 10.45 51.08 1997 -0.005 -0.019 -0.016 0.012 0.057 0.052 0.041 0.012 0.020 -0.013 -0.014 -0.014 - 10.45 51.08 1998 -0.026 -0.016 -0.013 0.032 0.078 0.050 0.035 -0.020 0.020 -0.003 -0.016 -0.011 - 10.45 51.08 1999 -0.024 -0.010 -0.018 0.018 0.080 0.074 0.043 0.024 0.002 -0.012 -0.015 -0.016 - 10.45 51.08 2000 -0.015 -0.020 -0.016 0.019 0.060 0.035 0.035 0.011 0.013 0.003 -0.024 -0.023 - 10.45 51.08 2001 -0.015 -0.021 -0.016 0.012 0.094 0.065 0.063 -0.027 0.007 -0.002 -0.017 -0.011 - 10.45 51.08 2002 -0.011 -0.027 -0.001 0.036 0.069 0.063 0.032 0.020 0.018 -0.004 -0.024 -0.011 - 10.45 51.08 2003 -0.013 -0.007 -0.021 0.007 0.051 0.067 0.011 -0.074 0.026 -0.006 -0.022 -0.015 - 10.45 51.08 2004 -0.015 -0.021 -0.005 0.046 0.089 0.071 0.063 -0.016 -0.011 0.003 -0.028 -0.012 - 10.45 51.08 2005 -0.023 -0.007 -0.010 0.027 0.072 0.044 0.014 0.034 0.016 0.013 -0.019 -0.013 - 10.45 51.08 2006 -0.007 -0.008 -0.009 0.005 0.079 0.080 -0.002 0.020 0.020 -0.005 -0.023 -0.026 - 10.45 51.08 2007 -0.034 -0.022 -0.028 0.034 0.073 0.069 0.058 0.061 0.035 0.007 -0.013 -0.014 - 10.45 51.08 2008 -0.026 -0.019 -0.013 0.022 0.085 0.056 0.036 -0.009 -0.006 0.006 -0.022 -0.013 - 10.45 51.08 2009 -0.007 -0.012 -0.026 0.023 0.085 0.067 0.040 0.015 0.006 -0.008 -0.025 -0.015 - 10.45 51.08 2010 -0.004 -0.007 -0.016 0.030 0.058 0.076 0.006 0.035 0.031 0.012 -0.020 -0.004 - 10.45 51.08 2011 -0.016 -0.013 -0.011 0.046 0.065 0.043 0.055 0.016 0.022 -0.003 -0.022 -0.022 - 10.45 51.08 2012 -0.023 -0.007 -0.021 0.012 0.065 0.058 0.054 0.019 -0.006 0.002 -0.022 -0.015 diff --git a/rLPJGUESS/inst/extdata/outputsForTests/run_npatch/outDirectory/mnpp.out b/rLPJGUESS/inst/extdata/outputsForTests/run_npatch/outDirectory/mnpp.out deleted file mode 100644 index cc41a1e..0000000 --- a/rLPJGUESS/inst/extdata/outputsForTests/run_npatch/outDirectory/mnpp.out +++ /dev/null @@ -1,63 +0,0 @@ - Lon Lat Year Jan Feb Mar Apr May Jun Jul Aug Sep Oct Nov Dec - 10.45 51.08 1951 -0.009 -0.008 -0.006 0.027 0.108 0.129 0.119 0.086 0.061 0.032 -0.004 -0.010 - 10.45 51.08 1952 -0.008 -0.006 -0.009 0.044 0.127 0.132 0.091 0.050 0.050 0.021 -0.005 -0.007 - 10.45 51.08 1953 -0.006 -0.007 0.001 0.086 0.105 0.099 0.105 0.095 0.035 0.023 -0.010 -0.012 - 10.45 51.08 1954 -0.005 -0.004 -0.009 0.018 0.118 0.098 0.094 0.083 0.051 0.028 -0.003 -0.012 - 10.45 51.08 1955 -0.005 -0.005 -0.006 0.018 0.115 0.117 0.086 0.072 0.059 0.028 -0.004 -0.010 - 10.45 51.08 1956 -0.008 -0.001 -0.009 0.011 0.113 0.101 0.102 0.098 0.066 0.025 -0.005 -0.011 - 10.45 51.08 1957 -0.008 -0.011 0.008 0.062 0.111 0.117 0.080 0.092 0.055 0.026 -0.013 -0.008 - 10.45 51.08 1958 -0.007 -0.009 -0.004 0.013 0.099 0.112 0.114 0.096 0.064 0.026 -0.006 -0.011 - 10.45 51.08 1959 -0.007 -0.005 0.002 0.061 0.124 0.120 0.069 0.071 0.031 0.016 -0.009 -0.008 - 10.45 51.08 1960 -0.008 -0.006 -0.006 0.021 0.097 0.127 0.115 0.082 0.055 0.023 -0.003 -0.007 - 10.45 51.08 1961 -0.006 -0.010 0.002 0.051 0.097 0.121 0.097 0.089 0.055 0.027 -0.010 -0.008 - 10.45 51.08 1962 -0.010 -0.006 -0.006 0.010 0.090 0.122 0.110 0.077 0.060 0.006 -0.002 -0.005 - 10.45 51.08 1963 -0.002 -0.002 -0.009 0.018 0.109 0.115 0.093 0.082 0.063 0.025 -0.000 -0.004 - 10.45 51.08 1964 -0.004 -0.006 -0.007 0.016 0.124 0.134 0.099 0.066 0.047 0.015 -0.011 -0.008 - 10.45 51.08 1965 -0.008 -0.004 -0.008 0.012 0.092 0.117 0.104 0.108 0.067 0.028 -0.004 -0.010 - 10.45 51.08 1966 -0.005 -0.007 -0.002 0.037 0.131 0.116 0.103 0.092 0.060 0.024 -0.008 -0.009 - 10.45 51.08 1967 -0.009 -0.008 -0.000 0.020 0.109 0.114 0.121 0.082 0.051 0.027 -0.003 -0.008 - 10.45 51.08 1968 -0.005 -0.006 -0.005 0.032 0.091 0.100 0.095 0.064 0.042 0.018 -0.005 -0.004 - 10.45 51.08 1969 -0.006 -0.004 -0.005 0.002 0.083 0.103 0.091 0.061 0.056 0.026 0.001 -0.003 - 10.45 51.08 1970 -0.004 -0.005 -0.006 0.005 0.092 0.129 0.117 0.083 0.068 0.014 -0.003 -0.007 - 10.45 51.08 1971 -0.005 -0.007 -0.006 0.028 0.098 0.108 0.120 0.067 0.049 0.021 -0.001 -0.010 - 10.45 51.08 1972 -0.004 -0.006 -0.003 0.029 0.100 0.138 0.096 0.089 0.058 0.027 -0.000 -0.007 - 10.45 51.08 1973 -0.006 -0.006 -0.007 0.005 0.105 0.125 0.099 0.066 0.056 0.027 -0.002 -0.006 - 10.45 51.08 1974 -0.010 -0.007 0.005 0.059 0.113 0.130 0.118 0.089 0.071 0.014 -0.011 -0.012 - 10.45 51.08 1975 -0.011 -0.006 -0.007 0.017 0.112 0.120 0.120 0.088 0.061 0.018 -0.002 -0.008 - 10.45 51.08 1976 -0.009 -0.005 -0.006 0.022 0.123 0.135 0.063 0.061 0.023 0.025 -0.001 -0.007 - 10.45 51.08 1977 -0.006 -0.006 0.002 0.023 0.107 0.077 0.091 0.061 0.044 0.022 -0.002 -0.007 - 10.45 51.08 1978 -0.006 -0.004 -0.004 0.021 0.076 0.096 0.095 0.075 0.045 0.022 -0.006 -0.006 - 10.45 51.08 1979 -0.003 -0.003 -0.007 0.013 0.089 0.112 0.105 0.095 0.059 0.024 -0.003 -0.010 - 10.45 51.08 1980 -0.004 -0.007 -0.006 0.013 0.102 0.124 0.095 0.084 0.058 0.022 -0.010 -0.007 - 10.45 51.08 1981 -0.004 -0.004 0.009 0.053 0.106 0.108 0.096 0.086 0.064 0.023 -0.009 -0.004 - 10.45 51.08 1982 -0.005 -0.004 -0.006 0.023 0.098 0.110 0.096 0.061 0.022 0.021 0.005 -0.007 - 10.45 51.08 1983 -0.009 -0.004 -0.002 0.040 0.107 0.131 0.110 0.083 0.059 0.023 -0.004 -0.006 - 10.45 51.08 1984 -0.007 -0.005 -0.006 0.013 0.074 0.122 0.114 0.092 0.053 0.031 -0.002 -0.006 - 10.45 51.08 1985 -0.003 -0.004 -0.006 0.030 0.109 0.120 0.134 0.106 0.060 0.014 -0.002 -0.010 - 10.45 51.08 1986 -0.006 -0.002 -0.006 0.007 0.112 0.126 0.116 0.091 0.070 0.037 0.004 -0.008 - 10.45 51.08 1987 -0.003 -0.005 -0.005 0.032 0.108 0.114 0.122 0.096 0.061 0.031 -0.003 -0.008 - 10.45 51.08 1988 -0.010 -0.007 -0.007 0.023 0.128 0.107 0.126 0.084 0.037 0.013 -0.003 -0.010 - 10.45 51.08 1989 -0.007 -0.006 0.001 0.028 0.125 0.115 0.051 0.043 0.032 0.028 -0.003 -0.008 - 10.45 51.08 1990 -0.007 -0.006 0.018 0.044 0.136 0.095 0.097 0.039 0.048 0.021 -0.010 -0.006 - 10.45 51.08 1991 -0.007 -0.004 0.004 0.052 0.091 0.124 0.049 0.083 0.032 0.012 -0.006 -0.006 - 10.45 51.08 1992 -0.006 -0.007 -0.003 0.031 0.127 0.102 0.107 0.049 0.065 0.010 -0.009 -0.007 - 10.45 51.08 1993 -0.009 -0.004 0.003 0.060 0.117 0.120 0.113 0.100 0.054 0.018 -0.006 -0.008 - 10.45 51.08 1994 -0.009 -0.005 0.001 0.040 0.128 0.131 0.106 0.084 0.066 0.023 -0.003 -0.011 - 10.45 51.08 1995 -0.007 -0.009 -0.004 0.032 0.118 0.111 0.115 0.105 0.055 0.032 -0.005 -0.004 - 10.45 51.08 1996 -0.003 -0.004 -0.007 0.022 0.091 0.128 0.125 0.092 0.050 0.027 -0.002 -0.005 - 10.45 51.08 1997 -0.004 -0.009 0.005 0.033 0.119 0.128 0.106 0.094 0.079 0.017 -0.006 -0.009 - 10.45 51.08 1998 -0.011 -0.007 0.005 0.064 0.141 0.125 0.103 0.060 0.055 0.014 -0.008 -0.008 - 10.45 51.08 1999 -0.011 -0.006 -0.003 0.049 0.142 0.138 0.109 0.097 0.069 0.021 -0.004 -0.010 - 10.45 51.08 2000 -0.008 -0.010 -0.001 0.051 0.143 0.111 0.095 0.083 0.058 0.031 -0.008 -0.012 - 10.45 51.08 2001 -0.008 -0.010 -0.005 0.032 0.150 0.123 0.130 0.062 0.051 0.033 -0.005 -0.008 - 10.45 51.08 2002 -0.009 -0.007 0.013 0.057 0.116 0.124 0.096 0.080 0.065 0.013 -0.014 -0.008 - 10.45 51.08 2003 -0.008 -0.004 -0.007 0.038 0.125 0.148 0.096 0.023 0.075 0.016 -0.012 -0.010 - 10.45 51.08 2004 -0.007 -0.010 0.007 0.076 0.124 0.133 0.125 0.070 0.042 0.035 -0.013 -0.008 - 10.45 51.08 2005 -0.011 -0.006 -0.003 0.061 0.122 0.119 0.094 0.090 0.070 0.043 -0.001 -0.009 - 10.45 51.08 2006 -0.005 -0.006 -0.007 0.032 0.140 0.139 0.092 0.083 0.071 0.032 -0.005 -0.014 - 10.45 51.08 2007 -0.016 -0.012 -0.008 0.074 0.136 0.130 0.111 0.105 0.067 0.026 -0.006 -0.010 - 10.45 51.08 2008 -0.014 -0.008 0.003 0.040 0.146 0.135 0.110 0.067 0.038 0.029 -0.012 -0.009 - 10.45 51.08 2009 -0.006 -0.007 -0.013 0.064 0.132 0.117 0.109 0.093 0.057 0.014 -0.014 -0.010 - 10.45 51.08 2010 -0.004 -0.007 -0.004 0.064 0.094 0.142 0.093 0.077 0.062 0.028 -0.009 -0.004 - 10.45 51.08 2011 -0.011 -0.008 0.002 0.094 0.130 0.118 0.111 0.077 0.070 0.027 -0.011 -0.014 - 10.45 51.08 2012 -0.012 -0.006 0.002 0.042 0.129 0.112 0.109 0.087 0.043 0.029 -0.010 -0.012 diff --git a/rLPJGUESS/inst/extdata/outputsForTests/run_npatch/outDirectory/mpet.out b/rLPJGUESS/inst/extdata/outputsForTests/run_npatch/outDirectory/mpet.out deleted file mode 100644 index 84c8a50..0000000 --- a/rLPJGUESS/inst/extdata/outputsForTests/run_npatch/outDirectory/mpet.out +++ /dev/null @@ -1,63 +0,0 @@ - Lon Lat Year Jan Feb Mar Apr May Jun Jul Aug Sep Oct Nov Dec - 10.45 51.08 1951 3.014 5.903 14.237 55.153 80.199 107.484 113.020 92.138 61.789 28.157 7.814 2.662 - 10.45 51.08 1952 2.824 4.756 12.786 61.099 91.172 109.390 125.081 95.188 43.072 23.151 6.614 2.101 - 10.45 51.08 1953 2.471 5.317 28.736 71.040 104.124 91.474 109.125 95.624 61.265 28.647 5.260 2.664 - 10.45 51.08 1954 2.549 4.556 16.282 42.728 98.648 107.803 81.520 85.366 54.803 28.523 8.787 2.618 - 10.45 51.08 1955 2.938 4.796 13.183 44.856 88.253 97.476 89.484 75.589 55.057 26.315 6.500 2.554 - 10.45 51.08 1956 3.236 3.076 15.213 35.764 99.979 83.162 101.682 82.653 56.311 27.268 6.237 2.588 - 10.45 51.08 1957 3.238 6.566 27.284 57.465 84.907 127.833 104.814 84.226 48.970 25.030 4.531 2.414 - 10.45 51.08 1958 3.167 7.405 12.425 34.210 90.905 96.416 111.917 100.416 63.652 28.327 6.523 2.617 - 10.45 51.08 1959 3.608 6.152 23.694 63.099 95.088 114.963 127.584 86.661 73.329 34.618 4.676 2.562 - 10.45 51.08 1960 2.371 4.330 12.487 42.421 83.677 116.878 98.258 80.135 48.202 23.697 7.836 1.992 - 10.45 51.08 1961 2.562 7.607 23.321 48.683 71.269 109.119 94.141 83.060 66.008 28.999 3.862 2.261 - 10.45 51.08 1962 3.492 5.502 12.594 42.279 69.224 109.242 93.147 90.666 60.001 27.236 6.581 2.225 - 10.45 51.08 1963 1.969 3.913 13.737 41.627 88.683 101.329 115.590 87.697 57.403 24.391 9.902 2.172 - 10.45 51.08 1964 2.793 6.088 10.490 43.875 100.816 132.875 121.214 88.427 60.969 22.952 4.571 2.474 - 10.45 51.08 1965 3.255 4.592 13.127 39.526 78.720 101.067 92.389 90.900 53.385 27.169 5.519 2.547 - 10.45 51.08 1966 2.680 8.117 18.303 45.805 100.887 114.191 88.661 86.147 51.427 29.255 4.725 2.537 - 10.45 51.08 1967 3.345 7.477 23.405 40.904 97.780 95.533 127.346 84.849 49.813 30.319 7.474 2.415 - 10.45 51.08 1968 3.414 6.794 23.951 63.436 78.354 104.792 110.767 83.458 49.168 24.973 7.300 2.388 - 10.45 51.08 1969 2.982 4.640 8.588 34.834 85.346 102.738 117.106 88.734 56.029 26.026 8.989 1.618 - 10.45 51.08 1970 1.925 3.729 9.623 24.231 71.328 116.071 100.791 77.996 56.714 19.660 7.877 2.051 - 10.45 51.08 1971 2.358 4.017 9.335 43.070 82.489 78.914 123.273 98.365 54.071 28.782 6.679 1.996 - 10.45 51.08 1972 2.029 4.299 19.393 36.732 73.079 99.468 93.272 76.343 43.609 23.352 7.137 2.153 - 10.45 51.08 1973 2.437 4.827 14.350 26.435 82.168 97.663 99.323 97.458 55.618 24.057 6.680 2.021 - 10.45 51.08 1974 3.073 5.445 19.928 53.078 73.096 89.027 87.408 83.829 56.680 17.491 3.827 2.572 - 10.45 51.08 1975 3.158 4.786 12.505 36.645 78.861 84.128 106.249 104.305 54.620 20.107 5.516 1.854 - 10.45 51.08 1976 2.294 4.066 10.356 40.149 91.333 110.085 121.521 88.616 42.005 23.037 6.771 1.826 - 10.45 51.08 1977 3.919 8.243 23.167 41.118 88.280 79.127 96.906 69.635 48.070 26.572 8.924 3.181 - 10.45 51.08 1978 3.038 4.987 18.489 42.292 71.702 90.147 92.367 79.928 43.268 24.647 6.011 2.273 - 10.45 51.08 1979 1.990 3.564 11.107 30.375 82.972 97.869 79.626 78.241 52.390 24.381 6.130 2.419 - 10.45 51.08 1980 2.016 5.123 9.288 32.513 83.499 90.923 73.823 86.118 52.427 22.564 3.644 1.989 - 10.45 51.08 1981 2.627 4.025 22.089 48.525 81.609 87.933 82.384 78.068 51.825 22.908 4.475 1.661 - 10.45 51.08 1982 2.557 5.486 16.104 46.007 87.727 106.488 111.157 95.102 67.217 23.751 9.959 2.297 - 10.45 51.08 1983 3.092 4.046 14.797 44.500 70.162 101.495 123.398 90.544 55.472 25.124 6.483 1.872 - 10.45 51.08 1984 2.627 4.068 10.619 40.361 58.565 82.369 89.522 81.161 41.901 24.828 7.154 2.148 - 10.45 51.08 1985 1.975 4.071 9.658 42.913 83.378 82.369 111.352 83.601 53.532 25.171 4.889 2.421 - 10.45 51.08 1986 2.479 2.732 12.280 25.896 90.156 101.182 101.682 87.765 46.395 28.290 8.606 2.360 - 10.45 51.08 1987 1.734 3.870 9.485 49.019 71.428 78.021 103.935 75.690 53.742 25.368 6.465 1.986 - 10.45 51.08 1988 3.056 4.606 9.680 44.924 96.942 87.558 108.038 98.056 51.142 24.009 6.568 2.190 - 10.45 51.08 1989 5.296 8.314 29.385 42.883 117.828 110.924 110.104 98.819 57.536 30.130 8.873 3.652 - 10.45 51.08 1990 3.872 11.438 31.858 49.703 111.137 89.764 109.485 103.014 42.930 29.563 5.188 2.641 - 10.45 51.08 1991 2.705 4.836 20.887 48.332 63.156 88.748 120.533 88.738 63.137 27.106 5.105 1.969 - 10.45 51.08 1992 2.557 5.220 16.251 44.054 105.313 93.080 108.543 91.775 52.154 17.891 4.970 2.248 - 10.45 51.08 1993 3.108 4.333 19.263 59.386 98.554 94.675 95.736 86.259 42.722 21.508 3.407 2.306 - 10.45 51.08 1994 3.204 5.110 19.949 46.163 89.743 106.696 131.207 91.597 51.210 23.127 7.921 2.815 - 10.45 51.08 1995 3.336 7.295 17.758 45.225 87.690 85.335 129.054 108.827 45.713 29.426 5.958 1.993 - 10.45 51.08 1996 2.376 5.269 10.877 51.445 66.276 109.544 95.658 85.678 37.301 23.934 7.956 2.129 - 10.45 51.08 1997 2.557 6.971 22.571 46.129 89.270 106.938 96.141 101.983 64.785 24.259 5.544 2.302 - 10.45 51.08 1998 3.381 8.174 21.454 51.932 99.553 103.064 90.553 92.439 45.397 19.566 3.664 2.437 - 10.45 51.08 1999 3.366 5.316 17.499 48.863 98.381 98.742 109.181 88.960 69.920 21.857 5.962 2.357 - 10.45 51.08 2000 2.894 6.446 17.808 57.232 105.755 112.425 72.386 97.364 50.036 26.311 6.391 2.646 - 10.45 51.08 2001 2.938 5.536 12.932 39.347 106.107 86.667 118.166 93.065 39.484 30.626 6.741 1.954 - 10.45 51.08 2002 3.232 9.002 23.679 47.873 81.865 103.475 90.100 84.929 53.379 19.831 3.996 1.951 - 10.45 51.08 2003 2.801 4.590 19.511 56.341 89.908 131.195 107.975 119.055 58.875 20.191 5.532 2.459 - 10.45 51.08 2004 2.728 5.428 21.946 59.251 78.915 94.859 97.771 99.199 62.560 28.763 3.827 2.208 - 10.45 51.08 2005 3.095 4.336 18.061 56.271 92.472 111.331 107.126 76.881 66.337 31.367 8.123 2.182 - 10.45 51.08 2006 2.571 4.413 11.691 45.176 94.777 115.720 145.543 69.263 71.014 28.989 8.799 2.815 - 10.45 51.08 2007 3.437 6.104 21.159 75.700 100.755 108.994 103.611 90.126 49.214 22.940 5.937 2.247 - 10.45 51.08 2008 3.621 8.104 20.350 42.298 98.701 112.344 108.211 85.492 47.162 25.851 4.586 2.068 - 10.45 51.08 2009 2.666 4.650 11.568 67.632 88.615 80.983 102.845 98.553 55.766 20.245 6.850 2.176 - 10.45 51.08 2010 2.081 4.590 19.192 58.775 63.178 113.124 127.021 74.012 46.905 25.113 6.125 1.633 - 10.45 51.08 2011 3.072 5.684 25.813 70.621 104.731 103.522 90.656 80.429 61.519 30.721 5.712 2.580 - 10.45 51.08 2012 3.151 4.671 29.136 43.973 100.114 86.172 99.888 98.763 57.146 27.088 5.797 2.375 diff --git a/rLPJGUESS/inst/extdata/outputsForTests/run_npatch/outDirectory/mra.out b/rLPJGUESS/inst/extdata/outputsForTests/run_npatch/outDirectory/mra.out deleted file mode 100644 index 2b3420e..0000000 --- a/rLPJGUESS/inst/extdata/outputsForTests/run_npatch/outDirectory/mra.out +++ /dev/null @@ -1,63 +0,0 @@ - Lon Lat Year Jan Feb Mar Apr May Jun Jul Aug Sep Oct Nov Dec - 10.45 51.08 1951 0.010 0.009 0.011 0.030 0.071 0.092 0.099 0.090 0.070 0.036 0.021 0.011 - 10.45 51.08 1952 0.008 0.007 0.011 0.047 0.082 0.094 0.099 0.086 0.052 0.033 0.012 0.007 - 10.45 51.08 1953 0.006 0.008 0.019 0.056 0.082 0.086 0.099 0.092 0.062 0.044 0.016 0.012 - 10.45 51.08 1954 0.005 0.004 0.014 0.024 0.078 0.089 0.080 0.084 0.065 0.044 0.020 0.012 - 10.45 51.08 1955 0.005 0.005 0.009 0.025 0.074 0.086 0.087 0.080 0.064 0.038 0.016 0.010 - 10.45 51.08 1956 0.008 0.001 0.011 0.020 0.076 0.076 0.089 0.079 0.063 0.039 0.013 0.011 - 10.45 51.08 1957 0.008 0.012 0.023 0.043 0.068 0.095 0.092 0.081 0.056 0.038 0.014 0.008 - 10.45 51.08 1958 0.008 0.011 0.007 0.020 0.076 0.084 0.096 0.092 0.070 0.042 0.016 0.011 - 10.45 51.08 1959 0.007 0.005 0.018 0.045 0.076 0.086 0.087 0.078 0.055 0.033 0.010 0.008 - 10.45 51.08 1960 0.008 0.006 0.012 0.025 0.067 0.091 0.085 0.077 0.056 0.035 0.019 0.007 - 10.45 51.08 1961 0.006 0.011 0.018 0.045 0.063 0.087 0.082 0.078 0.071 0.044 0.011 0.008 - 10.45 51.08 1962 0.010 0.006 0.007 0.026 0.058 0.085 0.081 0.078 0.058 0.034 0.012 0.005 - 10.45 51.08 1963 0.002 0.002 0.010 0.027 0.072 0.085 0.091 0.080 0.063 0.034 0.022 0.004 - 10.45 51.08 1964 0.004 0.006 0.007 0.029 0.082 0.102 0.095 0.079 0.061 0.030 0.014 0.008 - 10.45 51.08 1965 0.008 0.004 0.009 0.022 0.063 0.086 0.084 0.085 0.060 0.037 0.011 0.010 - 10.45 51.08 1966 0.005 0.011 0.012 0.035 0.083 0.091 0.082 0.081 0.059 0.044 0.010 0.009 - 10.45 51.08 1967 0.009 0.010 0.017 0.024 0.075 0.082 0.104 0.084 0.060 0.049 0.016 0.008 - 10.45 51.08 1968 0.005 0.006 0.012 0.031 0.057 0.073 0.076 0.066 0.048 0.033 0.012 0.004 - 10.45 51.08 1969 0.006 0.004 0.005 0.016 0.059 0.071 0.082 0.068 0.052 0.034 0.018 0.003 - 10.45 51.08 1970 0.004 0.005 0.007 0.017 0.061 0.092 0.089 0.080 0.064 0.033 0.021 0.008 - 10.45 51.08 1971 0.006 0.007 0.008 0.028 0.072 0.077 0.093 0.084 0.055 0.038 0.016 0.010 - 10.45 51.08 1972 0.004 0.007 0.014 0.027 0.065 0.087 0.087 0.078 0.051 0.030 0.016 0.007 - 10.45 51.08 1973 0.006 0.007 0.011 0.015 0.067 0.087 0.087 0.081 0.063 0.033 0.014 0.007 - 10.45 51.08 1974 0.010 0.009 0.016 0.039 0.067 0.081 0.084 0.082 0.064 0.024 0.012 0.012 - 10.45 51.08 1975 0.012 0.007 0.011 0.023 0.071 0.081 0.098 0.093 0.068 0.032 0.013 0.008 - 10.45 51.08 1976 0.009 0.006 0.008 0.026 0.078 0.095 0.092 0.076 0.050 0.040 0.016 0.007 - 10.45 51.08 1977 0.006 0.008 0.015 0.020 0.061 0.061 0.072 0.059 0.045 0.033 0.015 0.007 - 10.45 51.08 1978 0.006 0.004 0.012 0.020 0.050 0.067 0.069 0.065 0.044 0.030 0.011 0.007 - 10.45 51.08 1979 0.003 0.003 0.009 0.019 0.061 0.087 0.078 0.078 0.059 0.035 0.012 0.011 - 10.45 51.08 1980 0.004 0.008 0.009 0.019 0.059 0.082 0.074 0.080 0.061 0.034 0.011 0.007 - 10.45 51.08 1981 0.004 0.005 0.019 0.037 0.068 0.079 0.077 0.075 0.058 0.033 0.012 0.004 - 10.45 51.08 1982 0.005 0.005 0.011 0.022 0.063 0.083 0.087 0.078 0.060 0.037 0.021 0.008 - 10.45 51.08 1983 0.010 0.004 0.012 0.032 0.065 0.086 0.096 0.083 0.060 0.037 0.013 0.007 - 10.45 51.08 1984 0.007 0.005 0.007 0.020 0.050 0.077 0.081 0.081 0.052 0.040 0.016 0.007 - 10.45 51.08 1985 0.003 0.004 0.009 0.029 0.071 0.076 0.094 0.083 0.059 0.035 0.009 0.011 - 10.45 51.08 1986 0.006 0.002 0.010 0.017 0.079 0.086 0.092 0.084 0.054 0.043 0.021 0.009 - 10.45 51.08 1987 0.003 0.005 0.006 0.031 0.064 0.075 0.094 0.079 0.066 0.038 0.016 0.009 - 10.45 51.08 1988 0.011 0.008 0.009 0.027 0.084 0.080 0.098 0.089 0.058 0.037 0.015 0.010 - 10.45 51.08 1989 0.007 0.007 0.015 0.025 0.074 0.075 0.067 0.065 0.049 0.036 0.012 0.008 - 10.45 51.08 1990 0.007 0.011 0.022 0.031 0.078 0.068 0.076 0.069 0.046 0.033 0.010 0.006 - 10.45 51.08 1991 0.008 0.004 0.018 0.037 0.056 0.079 0.081 0.087 0.062 0.037 0.012 0.006 - 10.45 51.08 1992 0.007 0.007 0.012 0.028 0.080 0.082 0.093 0.083 0.060 0.026 0.011 0.007 - 10.45 51.08 1993 0.009 0.004 0.013 0.045 0.082 0.084 0.085 0.083 0.052 0.032 0.007 0.008 - 10.45 51.08 1994 0.009 0.005 0.017 0.033 0.080 0.089 0.106 0.088 0.060 0.030 0.019 0.011 - 10.45 51.08 1995 0.007 0.010 0.011 0.031 0.073 0.076 0.102 0.097 0.055 0.045 0.012 0.005 - 10.45 51.08 1996 0.003 0.004 0.007 0.030 0.060 0.090 0.088 0.086 0.047 0.036 0.018 0.005 - 10.45 51.08 1997 0.004 0.011 0.018 0.028 0.078 0.090 0.089 0.098 0.071 0.034 0.013 0.009 - 10.45 51.08 1998 0.011 0.013 0.018 0.047 0.090 0.095 0.088 0.085 0.060 0.032 0.009 0.008 - 10.45 51.08 1999 0.011 0.007 0.015 0.040 0.090 0.094 0.103 0.093 0.081 0.038 0.015 0.010 - 10.45 51.08 2000 0.008 0.011 0.017 0.046 0.099 0.096 0.082 0.096 0.067 0.046 0.019 0.012 - 10.45 51.08 2001 0.009 0.010 0.013 0.031 0.095 0.086 0.109 0.097 0.057 0.054 0.016 0.008 - 10.45 51.08 2002 0.009 0.015 0.022 0.041 0.084 0.099 0.095 0.096 0.068 0.033 0.015 0.008 - 10.45 51.08 2003 0.008 0.004 0.017 0.037 0.090 0.116 0.103 0.100 0.073 0.031 0.018 0.010 - 10.45 51.08 2004 0.008 0.011 0.019 0.051 0.078 0.093 0.099 0.098 0.066 0.047 0.013 0.008 - 10.45 51.08 2005 0.011 0.006 0.015 0.046 0.085 0.095 0.102 0.087 0.080 0.052 0.020 0.009 - 10.45 51.08 2006 0.005 0.006 0.010 0.035 0.091 0.103 0.121 0.085 0.086 0.054 0.026 0.014 - 10.45 51.08 2007 0.016 0.012 0.019 0.057 0.096 0.107 0.104 0.097 0.066 0.040 0.015 0.010 - 10.45 51.08 2008 0.015 0.012 0.018 0.036 0.097 0.107 0.108 0.096 0.061 0.044 0.017 0.009 - 10.45 51.08 2009 0.006 0.007 0.015 0.059 0.092 0.088 0.108 0.108 0.074 0.038 0.024 0.010 - 10.45 51.08 2010 0.004 0.007 0.019 0.048 0.068 0.106 0.118 0.090 0.065 0.041 0.020 0.004 - 10.45 51.08 2011 0.011 0.009 0.019 0.069 0.095 0.102 0.099 0.097 0.081 0.048 0.015 0.014 - 10.45 51.08 2012 0.012 0.006 0.026 0.041 0.099 0.093 0.107 0.108 0.071 0.046 0.019 0.012 diff --git a/rLPJGUESS/inst/extdata/outputsForTests/run_npatch/outDirectory/mrh.out b/rLPJGUESS/inst/extdata/outputsForTests/run_npatch/outDirectory/mrh.out deleted file mode 100644 index 6962ae8..0000000 --- a/rLPJGUESS/inst/extdata/outputsForTests/run_npatch/outDirectory/mrh.out +++ /dev/null @@ -1,63 +0,0 @@ - Lon Lat Year Jan Feb Mar Apr May Jun Jul Aug Sep Oct Nov Dec - 10.45 51.08 1951 0.012 0.009 0.009 0.030 0.059 0.052 0.073 0.062 0.058 0.027 0.014 0.008 - 10.45 51.08 1952 0.009 0.001 0.011 0.039 0.050 0.070 0.101 0.085 0.032 0.015 0.008 0.001 - 10.45 51.08 1953 0.003 0.004 0.019 0.050 0.070 0.070 0.072 0.073 0.055 0.038 0.018 0.011 - 10.45 51.08 1954 0.002 0.000 0.014 0.023 0.058 0.085 0.057 0.058 0.054 0.026 0.014 0.008 - 10.45 51.08 1955 0.002 0.004 0.003 0.022 0.057 0.066 0.071 0.050 0.048 0.028 0.009 0.005 - 10.45 51.08 1956 0.010 0.000 0.006 0.020 0.055 0.056 0.054 0.053 0.048 0.032 0.009 0.008 - 10.45 51.08 1957 0.003 0.014 0.024 0.032 0.048 0.080 0.089 0.057 0.040 0.020 0.012 0.004 - 10.45 51.08 1958 0.008 0.011 0.003 0.015 0.055 0.057 0.070 0.073 0.062 0.031 0.010 0.006 - 10.45 51.08 1959 0.009 0.002 0.024 0.042 0.063 0.072 0.107 0.079 0.060 0.036 0.010 0.004 - 10.45 51.08 1960 0.007 0.003 0.013 0.031 0.045 0.076 0.075 0.067 0.050 0.023 0.013 0.006 - 10.45 51.08 1961 0.003 0.010 0.027 0.032 0.035 0.054 0.089 0.068 0.075 0.052 0.017 0.005 - 10.45 51.08 1962 0.007 0.006 0.001 0.026 0.044 0.072 0.066 0.078 0.051 0.036 0.012 0.002 - 10.45 51.08 1963 0.000 0.000 0.006 0.026 0.054 0.074 0.080 0.061 0.051 0.025 0.015 0.003 - 10.45 51.08 1964 0.000 0.003 0.003 0.025 0.052 0.091 0.086 0.073 0.058 0.027 0.012 0.007 - 10.45 51.08 1965 0.006 0.001 0.004 0.026 0.041 0.054 0.066 0.061 0.043 0.032 0.008 0.005 - 10.45 51.08 1966 0.003 0.007 0.015 0.025 0.063 0.076 0.046 0.054 0.040 0.038 0.006 0.005 - 10.45 51.08 1967 0.005 0.011 0.019 0.022 0.058 0.050 0.085 0.075 0.040 0.036 0.013 0.003 - 10.45 51.08 1968 0.002 0.008 0.009 0.039 0.049 0.075 0.095 0.078 0.056 0.031 0.014 0.002 - 10.45 51.08 1969 0.003 0.004 0.001 0.018 0.049 0.055 0.093 0.100 0.042 0.035 0.020 0.001 - 10.45 51.08 1970 0.000 0.000 0.003 0.017 0.044 0.085 0.093 0.067 0.056 0.029 0.014 0.007 - 10.45 51.08 1971 0.002 0.011 0.006 0.035 0.074 0.072 0.094 0.109 0.058 0.039 0.014 0.008 - 10.45 51.08 1972 0.004 0.005 0.018 0.031 0.044 0.059 0.080 0.055 0.040 0.023 0.015 0.006 - 10.45 51.08 1973 0.003 0.008 0.012 0.021 0.058 0.089 0.106 0.090 0.068 0.025 0.010 0.002 - 10.45 51.08 1974 0.013 0.013 0.014 0.039 0.043 0.055 0.057 0.078 0.063 0.020 0.010 0.010 - 10.45 51.08 1975 0.018 0.009 0.014 0.018 0.052 0.061 0.091 0.102 0.067 0.036 0.011 0.006 - 10.45 51.08 1976 0.011 0.001 0.006 0.030 0.064 0.071 0.119 0.074 0.056 0.041 0.013 0.006 - 10.45 51.08 1977 0.003 0.012 0.025 0.019 0.058 0.068 0.071 0.054 0.046 0.031 0.019 0.005 - 10.45 51.08 1978 0.009 0.002 0.018 0.028 0.046 0.086 0.068 0.080 0.046 0.027 0.013 0.004 - 10.45 51.08 1979 0.000 0.000 0.008 0.020 0.050 0.103 0.072 0.082 0.065 0.040 0.010 0.010 - 10.45 51.08 1980 0.002 0.010 0.012 0.024 0.046 0.088 0.069 0.098 0.067 0.035 0.011 0.005 - 10.45 51.08 1981 0.004 0.003 0.018 0.040 0.047 0.072 0.095 0.071 0.057 0.027 0.012 0.003 - 10.45 51.08 1982 0.001 0.005 0.014 0.032 0.062 0.109 0.108 0.105 0.083 0.046 0.022 0.009 - 10.45 51.08 1983 0.017 0.005 0.016 0.023 0.046 0.071 0.112 0.090 0.065 0.043 0.015 0.005 - 10.45 51.08 1984 0.016 0.005 0.006 0.021 0.038 0.053 0.069 0.071 0.046 0.029 0.013 0.007 - 10.45 51.08 1985 0.000 0.002 0.009 0.037 0.069 0.078 0.090 0.086 0.062 0.050 0.011 0.010 - 10.45 51.08 1986 0.004 0.001 0.007 0.016 0.067 0.063 0.101 0.092 0.039 0.037 0.014 0.008 - 10.45 51.08 1987 0.002 0.001 0.001 0.032 0.048 0.042 0.085 0.055 0.058 0.027 0.013 0.004 - 10.45 51.08 1988 0.016 0.011 0.009 0.029 0.077 0.082 0.082 0.094 0.061 0.044 0.016 0.007 - 10.45 51.08 1989 0.015 0.010 0.024 0.035 0.064 0.077 0.094 0.087 0.063 0.039 0.016 0.005 - 10.45 51.08 1990 0.008 0.018 0.025 0.025 0.065 0.052 0.071 0.090 0.049 0.037 0.016 0.004 - 10.45 51.08 1991 0.012 0.001 0.024 0.030 0.036 0.061 0.095 0.070 0.064 0.040 0.014 0.004 - 10.45 51.08 1992 0.011 0.008 0.018 0.025 0.070 0.086 0.075 0.092 0.049 0.027 0.010 0.006 - 10.45 51.08 1993 0.008 0.001 0.012 0.036 0.083 0.058 0.054 0.067 0.038 0.026 0.005 0.004 - 10.45 51.08 1994 0.011 0.005 0.017 0.024 0.061 0.061 0.099 0.089 0.038 0.020 0.015 0.008 - 10.45 51.08 1995 0.004 0.014 0.014 0.025 0.048 0.044 0.082 0.087 0.037 0.028 0.011 0.001 - 10.45 51.08 1996 0.000 0.000 0.004 0.026 0.040 0.071 0.052 0.063 0.030 0.023 0.012 0.003 - 10.45 51.08 1997 0.000 0.010 0.021 0.020 0.062 0.076 0.065 0.082 0.060 0.029 0.008 0.005 - 10.45 51.08 1998 0.015 0.009 0.019 0.032 0.063 0.074 0.068 0.080 0.036 0.017 0.007 0.002 - 10.45 51.08 1999 0.013 0.004 0.015 0.031 0.062 0.064 0.066 0.073 0.067 0.033 0.011 0.006 - 10.45 51.08 2000 0.007 0.010 0.015 0.032 0.083 0.077 0.060 0.072 0.044 0.028 0.016 0.011 - 10.45 51.08 2001 0.007 0.012 0.011 0.019 0.056 0.058 0.067 0.089 0.044 0.035 0.012 0.003 - 10.45 51.08 2002 0.002 0.020 0.015 0.021 0.047 0.062 0.064 0.059 0.048 0.017 0.010 0.003 - 10.45 51.08 2003 0.005 0.003 0.014 0.031 0.074 0.082 0.086 0.097 0.048 0.022 0.011 0.006 - 10.45 51.08 2004 0.008 0.010 0.012 0.030 0.036 0.062 0.062 0.086 0.053 0.032 0.015 0.004 - 10.45 51.08 2005 0.012 0.001 0.008 0.034 0.050 0.075 0.081 0.056 0.055 0.030 0.019 0.005 - 10.45 51.08 2006 0.002 0.002 0.002 0.027 0.062 0.059 0.094 0.063 0.051 0.036 0.018 0.012 - 10.45 51.08 2007 0.018 0.011 0.020 0.039 0.063 0.061 0.053 0.044 0.032 0.019 0.008 0.004 - 10.45 51.08 2008 0.011 0.012 0.016 0.018 0.060 0.078 0.074 0.076 0.045 0.023 0.010 0.004 - 10.45 51.08 2009 0.001 0.004 0.013 0.041 0.047 0.050 0.070 0.077 0.050 0.022 0.011 0.005 - 10.45 51.08 2010 0.000 0.001 0.012 0.034 0.036 0.066 0.087 0.042 0.031 0.017 0.011 0.000 - 10.45 51.08 2011 0.006 0.005 0.013 0.048 0.065 0.075 0.056 0.061 0.048 0.030 0.011 0.008 - 10.45 51.08 2012 0.012 0.001 0.024 0.030 0.064 0.054 0.054 0.068 0.049 0.027 0.011 0.004 diff --git a/rLPJGUESS/inst/extdata/outputsForTests/run_npatch/outDirectory/mrunoff.out b/rLPJGUESS/inst/extdata/outputsForTests/run_npatch/outDirectory/mrunoff.out deleted file mode 100644 index 470f84f..0000000 --- a/rLPJGUESS/inst/extdata/outputsForTests/run_npatch/outDirectory/mrunoff.out +++ /dev/null @@ -1,63 +0,0 @@ - Lon Lat Year Jan Feb Mar Apr May Jun Jul Aug Sep Oct Nov Dec - 10.45 51.08 1951 2.679 9.246 11.701 2.431 0.241 61.412 0.000 2.812 0.774 0.216 27.593 5.596 - 10.45 51.08 1952 12.249 19.992 43.412 20.288 4.992 0.291 0.000 0.000 65.152 26.295 51.324 19.265 - 10.45 51.08 1953 26.046 49.496 0.621 0.000 0.000 4.512 0.233 0.307 0.000 0.000 0.000 2.058 - 10.45 51.08 1954 17.149 5.144 5.120 13.752 0.589 0.000 3.844 4.741 6.327 8.526 6.125 22.911 - 10.45 51.08 1955 25.677 19.260 30.802 10.064 0.493 0.359 6.362 14.824 1.928 3.180 6.441 24.965 - 10.45 51.08 1956 13.794 0.000 42.928 25.237 0.746 21.998 87.442 8.877 1.547 8.421 16.791 12.057 - 10.45 51.08 1957 23.891 28.180 14.946 4.321 0.518 0.000 1.531 1.042 6.958 5.170 17.544 12.940 - 10.45 51.08 1958 25.198 12.427 64.826 15.021 7.300 26.213 21.751 1.391 1.587 9.401 12.232 20.085 - 10.45 51.08 1959 11.403 3.611 3.670 2.801 0.688 1.032 0.000 0.000 0.000 0.000 0.910 2.209 - 10.45 51.08 1960 18.366 5.182 10.077 5.280 18.355 0.201 0.000 3.004 6.661 56.878 15.021 26.912 - 10.45 51.08 1961 32.233 24.370 8.714 44.384 45.086 46.337 0.000 0.000 0.000 0.000 0.317 13.409 - 10.45 51.08 1962 12.705 14.320 13.841 8.158 6.908 0.005 0.000 0.000 0.000 0.000 0.026 2.292 - 10.45 51.08 1963 0.335 0.396 25.646 5.782 2.009 2.479 2.726 5.874 1.531 7.792 15.421 1.932 - 10.45 51.08 1964 4.059 13.646 6.546 13.621 33.992 0.000 0.000 0.000 0.000 0.000 0.568 0.677 - 10.45 51.08 1965 4.819 3.958 25.516 10.223 4.449 11.390 0.552 0.970 0.984 0.622 8.259 42.596 - 10.45 51.08 1966 10.216 26.403 9.235 14.989 0.305 1.745 26.362 21.626 1.882 35.548 23.329 30.746 - 10.45 51.08 1967 15.385 12.742 24.901 8.455 0.978 8.852 0.000 0.000 6.353 5.370 7.053 12.097 - 10.45 51.08 1968 22.153 15.159 16.143 5.520 7.328 4.031 2.094 3.247 8.237 18.483 9.223 3.547 - 10.45 51.08 1969 11.811 6.499 11.307 52.759 40.986 26.015 1.214 6.172 8.352 2.062 5.715 0.090 - 10.45 51.08 1970 5.843 51.380 18.014 22.862 15.645 1.526 0.000 12.209 0.248 10.938 14.162 8.830 - 10.45 51.08 1971 10.749 11.836 6.841 3.790 0.339 3.682 0.118 0.000 0.000 0.000 6.942 1.860 - 10.45 51.08 1972 0.000 1.591 4.573 7.658 4.595 6.497 24.437 41.389 0.658 2.189 10.131 1.135 - 10.45 51.08 1973 7.010 9.173 11.414 8.087 3.840 0.000 0.000 0.000 0.000 9.270 2.460 12.219 - 10.45 51.08 1974 5.537 9.784 8.259 0.000 2.264 4.026 6.019 0.358 0.500 28.817 8.514 35.389 - 10.45 51.08 1975 4.718 9.253 12.291 19.969 1.279 1.510 0.049 0.000 0.000 0.545 2.155 1.402 - 10.45 51.08 1976 21.187 4.202 3.290 1.221 0.076 4.401 0.000 0.000 0.000 0.000 0.000 0.651 - 10.45 51.08 1977 4.123 6.261 13.548 5.134 0.572 6.581 1.374 55.565 5.664 5.069 49.408 21.296 - 10.45 51.08 1978 7.176 7.162 18.291 4.592 8.726 2.228 4.145 5.357 10.025 10.733 0.931 12.851 - 10.45 51.08 1979 1.243 2.119 87.924 17.576 3.471 0.078 1.091 0.610 0.164 0.287 6.680 18.453 - 10.45 51.08 1980 10.025 11.772 7.943 12.926 0.798 0.771 3.727 0.000 0.000 0.714 4.108 9.312 - 10.45 51.08 1981 6.912 13.276 19.774 3.383 10.867 2.891 0.396 27.249 3.471 19.105 25.123 25.988 - 10.45 51.08 1982 32.491 1.234 10.476 3.879 1.923 0.000 0.000 0.000 0.000 0.000 0.739 2.208 - 10.45 51.08 1983 3.916 2.858 6.066 59.964 16.103 0.522 0.000 0.000 0.760 0.164 1.407 1.886 - 10.45 51.08 1984 6.186 9.971 3.650 15.156 35.624 10.174 1.619 3.344 6.453 11.423 27.064 4.210 - 10.45 51.08 1985 11.792 5.038 10.447 4.172 1.315 2.581 0.254 0.149 0.245 0.000 0.034 7.374 - 10.45 51.08 1986 10.713 0.720 20.516 22.243 4.652 5.872 0.000 0.000 2.206 11.799 1.721 13.055 - 10.45 51.08 1987 22.681 13.334 51.686 3.215 3.029 33.615 2.621 7.478 26.888 3.340 16.453 15.273 - 10.45 51.08 1988 17.543 21.257 55.475 16.082 0.000 0.536 1.501 0.036 0.000 0.000 1.857 22.942 - 10.45 51.08 1989 5.530 4.588 8.794 5.177 0.151 0.203 0.000 0.000 0.106 3.156 16.513 23.463 - 10.45 51.08 1990 5.667 9.638 12.400 11.904 0.631 12.909 3.244 1.231 4.873 2.434 15.645 13.346 - 10.45 51.08 1991 9.903 4.542 5.297 1.531 1.987 1.112 0.000 9.191 0.000 0.000 0.325 4.417 - 10.45 51.08 1992 3.530 4.588 40.074 5.759 1.816 0.000 19.427 0.000 0.768 5.069 21.166 24.999 - 10.45 51.08 1993 12.318 10.580 7.209 2.549 0.645 3.884 24.103 2.121 4.178 8.106 8.097 49.216 - 10.45 51.08 1994 16.723 9.541 24.258 69.514 4.230 2.027 0.487 1.515 5.949 2.400 10.593 12.869 - 10.45 51.08 1995 20.406 21.791 8.954 10.290 2.642 26.307 10.121 0.000 16.730 1.868 6.500 5.975 - 10.45 51.08 1996 1.019 9.638 7.570 3.952 13.021 0.538 11.516 12.615 5.460 10.899 22.889 34.145 - 10.45 51.08 1997 7.388 32.305 28.036 8.720 2.400 0.000 33.105 0.644 0.000 4.543 3.966 10.751 - 10.45 51.08 1998 5.240 4.062 12.876 6.759 0.688 0.576 3.747 0.028 8.490 42.690 34.427 3.775 - 10.45 51.08 1999 10.054 9.717 13.935 7.540 0.103 4.671 10.177 0.281 0.000 0.644 9.327 14.173 - 10.45 51.08 2000 12.990 23.261 26.678 3.463 0.280 0.000 0.152 0.647 4.920 5.533 4.778 3.199 - 10.45 51.08 2001 4.588 3.949 36.517 9.895 1.792 2.505 6.031 0.000 3.350 4.425 19.083 8.946 - 10.45 51.08 2002 5.343 17.262 19.832 5.911 8.713 24.269 15.644 4.971 2.132 14.541 65.697 85.298 - 10.45 51.08 2003 25.555 9.091 10.820 1.685 2.382 2.979 0.000 0.000 0.000 0.114 2.393 6.437 - 10.45 51.08 2004 7.547 5.455 4.221 3.416 67.095 0.203 5.103 0.000 0.000 0.000 6.931 3.928 - 10.45 51.08 2005 3.296 12.221 10.128 4.042 2.742 0.000 0.000 4.230 2.713 2.234 4.533 6.082 - 10.45 51.08 2006 4.261 4.117 12.697 8.399 1.764 3.598 7.898 3.923 0.112 2.578 6.404 3.934 - 10.45 51.08 2007 9.904 7.395 10.286 0.656 3.413 5.852 23.281 72.310 61.092 1.339 13.496 9.588 - 10.45 51.08 2008 6.802 5.616 16.837 22.919 1.080 0.000 0.654 0.000 0.000 7.644 4.677 12.093 - 10.45 51.08 2009 2.076 8.062 10.908 2.396 6.835 3.600 3.194 0.000 0.000 8.554 23.170 46.593 - 10.45 51.08 2010 8.412 36.941 7.461 1.432 22.243 2.813 14.815 42.394 17.807 3.255 51.673 7.081 - 10.45 51.08 2011 94.673 7.902 3.861 0.782 0.000 0.000 1.676 4.406 1.730 2.462 0.000 8.160 - 10.45 51.08 2012 19.116 2.967 1.632 1.224 0.564 5.285 10.700 0.008 0.472 1.698 7.739 16.036 diff --git a/rLPJGUESS/inst/extdata/outputsForTests/run_npatch/outDirectory/mwcont_lower.out b/rLPJGUESS/inst/extdata/outputsForTests/run_npatch/outDirectory/mwcont_lower.out deleted file mode 100644 index 14e495c..0000000 --- a/rLPJGUESS/inst/extdata/outputsForTests/run_npatch/outDirectory/mwcont_lower.out +++ /dev/null @@ -1,63 +0,0 @@ - Lon Lat Year Jan Feb Mar Apr May Jun Jul Aug Sep Oct Nov Dec - 10.45 51.08 1951 0.621 0.715 0.782 0.818 0.762 0.725 0.685 0.644 0.605 0.584 0.632 0.696 - 10.45 51.08 1952 0.744 0.799 0.874 0.913 0.892 0.823 0.622 0.437 0.508 0.696 0.853 0.921 - 10.45 51.08 1953 0.970 0.999 0.995 0.952 0.813 0.693 0.643 0.564 0.493 0.481 0.507 0.530 - 10.45 51.08 1954 0.606 0.659 0.719 0.766 0.723 0.570 0.558 0.593 0.598 0.616 0.641 0.682 - 10.45 51.08 1955 0.741 0.826 0.855 0.917 0.882 0.787 0.716 0.726 0.712 0.710 0.733 0.785 - 10.45 51.08 1956 0.869 0.889 0.936 0.965 0.945 0.891 0.941 0.970 0.963 0.959 0.992 1.000 - 10.45 51.08 1957 1.000 1.000 0.998 0.981 0.916 0.787 0.661 0.626 0.621 0.659 0.693 0.730 - 10.45 51.08 1958 0.832 0.887 0.949 0.992 0.979 0.918 0.890 0.799 0.744 0.762 0.829 0.878 - 10.45 51.08 1959 0.949 0.976 0.980 0.961 0.896 0.792 0.601 0.488 0.453 0.424 0.528 0.603 - 10.45 51.08 1960 0.710 0.795 0.847 0.859 0.834 0.756 0.616 0.557 0.568 0.620 0.718 0.783 - 10.45 51.08 1961 0.873 0.962 0.995 0.995 0.990 0.971 0.819 0.734 0.639 0.541 0.547 0.639 - 10.45 51.08 1962 0.715 0.781 0.815 0.883 0.876 0.779 0.641 0.533 0.506 0.502 0.507 0.545 - 10.45 51.08 1963 0.570 0.575 0.660 0.741 0.712 0.614 0.581 0.584 0.587 0.613 0.642 0.678 - 10.45 51.08 1964 0.692 0.747 0.778 0.834 0.832 0.710 0.530 0.469 0.449 0.455 0.496 0.543 - 10.45 51.08 1965 0.616 0.679 0.728 0.787 0.802 0.755 0.699 0.649 0.605 0.595 0.605 0.703 - 10.45 51.08 1966 0.776 0.834 0.872 0.922 0.889 0.769 0.766 0.746 0.757 0.740 0.821 0.896 - 10.45 51.08 1967 0.964 0.989 0.999 0.994 0.937 0.884 0.797 0.671 0.676 0.700 0.722 0.773 - 10.45 51.08 1968 0.821 0.877 0.935 0.940 0.922 0.856 0.725 0.626 0.617 0.662 0.688 0.718 - 10.45 51.08 1969 0.756 0.809 0.846 0.940 0.970 0.939 0.849 0.677 0.666 0.654 0.683 0.710 - 10.45 51.08 1970 0.721 0.810 0.894 0.964 0.991 0.927 0.786 0.736 0.739 0.749 0.829 0.882 - 10.45 51.08 1971 0.906 0.961 0.986 0.986 0.931 0.869 0.741 0.512 0.445 0.438 0.473 0.572 - 10.45 51.08 1972 0.603 0.634 0.672 0.732 0.720 0.690 0.656 0.663 0.660 0.651 0.679 0.716 - 10.45 51.08 1973 0.728 0.778 0.836 0.865 0.859 0.744 0.571 0.481 0.427 0.480 0.578 0.674 - 10.45 51.08 1974 0.751 0.807 0.858 0.830 0.802 0.760 0.770 0.691 0.644 0.661 0.778 0.872 - 10.45 51.08 1975 0.942 0.968 0.985 0.996 0.948 0.851 0.772 0.576 0.465 0.456 0.492 0.558 - 10.45 51.08 1976 0.671 0.771 0.809 0.823 0.747 0.631 0.408 0.312 0.283 0.294 0.337 0.416 - 10.45 51.08 1977 0.483 0.592 0.668 0.740 0.739 0.674 0.671 0.721 0.760 0.773 0.847 0.918 - 10.45 51.08 1978 0.974 0.994 1.000 0.991 0.969 0.885 0.807 0.730 0.703 0.733 0.739 0.772 - 10.45 51.08 1979 0.814 0.825 0.920 0.996 0.978 0.883 0.801 0.748 0.663 0.635 0.673 0.743 - 10.45 51.08 1980 0.801 0.876 0.904 0.949 0.922 0.812 0.771 0.648 0.557 0.553 0.593 0.657 - 10.45 51.08 1981 0.746 0.788 0.844 0.850 0.841 0.818 0.761 0.707 0.693 0.732 0.794 0.878 - 10.45 51.08 1982 0.934 0.953 0.966 0.967 0.924 0.762 0.608 0.475 0.395 0.395 0.428 0.484 - 10.45 51.08 1983 0.553 0.622 0.657 0.773 0.817 0.804 0.637 0.474 0.440 0.439 0.437 0.458 - 10.45 51.08 1984 0.518 0.622 0.676 0.754 0.795 0.846 0.783 0.739 0.722 0.812 0.853 0.892 - 10.45 51.08 1985 0.911 0.955 0.974 0.980 0.930 0.803 0.689 0.544 0.460 0.399 0.391 0.422 - 10.45 51.08 1986 0.506 0.553 0.622 0.749 0.766 0.764 0.600 0.438 0.413 0.413 0.445 0.474 - 10.45 51.08 1987 0.593 0.668 0.751 0.853 0.802 0.839 0.813 0.819 0.802 0.821 0.891 0.973 - 10.45 51.08 1988 1.000 1.000 0.999 0.989 0.893 0.689 0.583 0.454 0.380 0.380 0.392 0.481 - 10.45 51.08 1989 0.596 0.632 0.722 0.759 0.731 0.626 0.551 0.558 0.555 0.579 0.621 0.674 - 10.45 51.08 1990 0.722 0.758 0.806 0.809 0.755 0.649 0.608 0.561 0.576 0.590 0.610 0.653 - 10.45 51.08 1991 0.718 0.736 0.759 0.752 0.721 0.621 0.558 0.556 0.534 0.523 0.539 0.566 - 10.45 51.08 1992 0.625 0.658 0.707 0.766 0.716 0.577 0.567 0.541 0.547 0.558 0.610 0.703 - 10.45 51.08 1993 0.763 0.806 0.854 0.858 0.740 0.705 0.670 0.665 0.643 0.659 0.702 0.777 - 10.45 51.08 1994 0.876 0.937 0.990 0.991 0.932 0.899 0.778 0.641 0.646 0.656 0.700 0.773 - 10.45 51.08 1995 0.828 0.926 0.975 0.987 0.949 0.961 0.883 0.756 0.737 0.780 0.820 0.850 - 10.45 51.08 1996 0.875 0.895 0.938 0.961 0.953 0.898 0.843 0.782 0.814 0.852 0.924 0.977 - 10.45 51.08 1997 0.991 0.999 0.998 0.995 0.958 0.808 0.689 0.648 0.561 0.541 0.578 0.656 - 10.45 51.08 1998 0.739 0.776 0.830 0.843 0.777 0.663 0.576 0.511 0.520 0.634 0.816 0.863 - 10.45 51.08 1999 0.892 0.947 0.995 0.993 0.921 0.822 0.759 0.655 0.555 0.515 0.535 0.622 - 10.45 51.08 2000 0.699 0.810 0.929 0.969 0.855 0.661 0.528 0.462 0.453 0.473 0.506 0.547 - 10.45 51.08 2001 0.593 0.638 0.726 0.854 0.829 0.729 0.650 0.526 0.501 0.522 0.566 0.715 - 10.45 51.08 2002 0.761 0.813 0.898 0.925 0.950 0.916 0.846 0.827 0.781 0.834 0.959 0.999 - 10.45 51.08 2003 1.000 1.000 0.999 0.983 0.903 0.797 0.630 0.422 0.366 0.392 0.423 0.486 - 10.45 51.08 2004 0.566 0.635 0.668 0.665 0.688 0.615 0.539 0.443 0.400 0.389 0.412 0.459 - 10.45 51.08 2005 0.506 0.582 0.653 0.697 0.652 0.514 0.398 0.401 0.398 0.401 0.414 0.447 - 10.45 51.08 2006 0.496 0.529 0.570 0.651 0.607 0.534 0.407 0.384 0.404 0.404 0.434 0.470 - 10.45 51.08 2007 0.542 0.624 0.720 0.741 0.603 0.504 0.486 0.488 0.486 0.510 0.600 0.750 - 10.45 51.08 2008 0.809 0.873 0.927 0.986 0.928 0.770 0.633 0.467 0.415 0.434 0.477 0.560 - 10.45 51.08 2009 0.611 0.653 0.780 0.814 0.791 0.750 0.679 0.558 0.469 0.510 0.618 0.761 - 10.45 51.08 2010 0.841 0.872 0.937 0.941 0.918 0.902 0.700 0.743 0.829 0.849 0.909 0.971 - 10.45 51.08 2011 0.994 1.000 0.997 0.953 0.805 0.593 0.535 0.483 0.471 0.466 0.469 0.506 - 10.45 51.08 2012 0.612 0.672 0.700 0.680 0.598 0.510 0.546 0.511 0.492 0.486 0.498 0.562 diff --git a/rLPJGUESS/inst/extdata/outputsForTests/run_npatch/outDirectory/mwcont_upper.out b/rLPJGUESS/inst/extdata/outputsForTests/run_npatch/outDirectory/mwcont_upper.out deleted file mode 100644 index 064939c..0000000 --- a/rLPJGUESS/inst/extdata/outputsForTests/run_npatch/outDirectory/mwcont_upper.out +++ /dev/null @@ -1,63 +0,0 @@ - Lon Lat Year Jan Feb Mar Apr May Jun Jul Aug Sep Oct Nov Dec - 10.45 51.08 1951 0.833 0.855 0.819 0.527 0.312 0.754 0.550 0.661 0.522 0.448 0.800 0.904 - 10.45 51.08 1952 0.910 0.926 0.909 0.736 0.698 0.442 0.148 0.140 0.737 0.930 0.924 0.938 - 10.45 51.08 1953 0.919 0.944 0.713 0.379 0.248 0.424 0.588 0.391 0.194 0.264 0.515 0.532 - 10.45 51.08 1954 0.770 0.873 0.742 0.661 0.378 0.257 0.574 0.625 0.524 0.708 0.723 0.807 - 10.45 51.08 1955 0.941 0.928 0.918 0.723 0.429 0.381 0.587 0.807 0.634 0.583 0.814 0.868 - 10.45 51.08 1956 0.907 0.864 0.826 0.720 0.545 0.724 0.829 0.673 0.530 0.596 0.788 0.801 - 10.45 51.08 1957 0.893 0.835 0.726 0.535 0.397 0.385 0.528 0.577 0.533 0.842 0.888 0.894 - 10.45 51.08 1958 0.924 0.838 0.901 0.746 0.616 0.692 0.639 0.511 0.426 0.696 0.910 0.889 - 10.45 51.08 1959 0.909 0.803 0.621 0.522 0.420 0.422 0.118 0.371 0.192 0.150 0.790 0.822 - 10.45 51.08 1960 0.884 0.886 0.764 0.527 0.635 0.494 0.264 0.436 0.567 0.831 0.904 0.918 - 10.45 51.08 1961 0.939 0.874 0.637 0.771 0.840 0.748 0.250 0.331 0.242 0.166 0.429 0.803 - 10.45 51.08 1962 0.895 0.894 0.910 0.683 0.543 0.266 0.364 0.242 0.332 0.225 0.241 0.516 - 10.45 51.08 1963 0.629 0.635 0.833 0.710 0.460 0.417 0.478 0.619 0.442 0.623 0.753 0.873 - 10.45 51.08 1964 0.862 0.857 0.739 0.690 0.678 0.410 0.275 0.313 0.256 0.369 0.542 0.649 - 10.45 51.08 1965 0.804 0.862 0.885 0.633 0.610 0.622 0.534 0.510 0.494 0.380 0.573 0.897 - 10.45 51.08 1966 0.902 0.930 0.746 0.685 0.463 0.435 0.827 0.656 0.675 0.572 0.914 0.915 - 10.45 51.08 1967 0.918 0.808 0.733 0.612 0.390 0.654 0.463 0.418 0.683 0.691 0.725 0.798 - 10.45 51.08 1968 0.918 0.881 0.837 0.544 0.610 0.437 0.306 0.337 0.518 0.804 0.817 0.779 - 10.45 51.08 1969 0.791 0.805 0.899 0.826 0.770 0.765 0.444 0.360 0.748 0.583 0.682 0.754 - 10.45 51.08 1970 0.780 0.940 0.897 0.809 0.673 0.354 0.278 0.677 0.570 0.679 0.912 0.895 - 10.45 51.08 1971 0.869 0.790 0.693 0.538 0.419 0.476 0.181 0.115 0.160 0.330 0.631 0.877 - 10.45 51.08 1972 0.808 0.804 0.775 0.612 0.612 0.670 0.611 0.855 0.620 0.494 0.736 0.858 - 10.45 51.08 1973 0.817 0.875 0.813 0.612 0.494 0.262 0.213 0.206 0.396 0.700 0.908 0.911 - 10.45 51.08 1974 0.876 0.828 0.803 0.459 0.508 0.562 0.714 0.502 0.447 0.651 0.883 0.920 - 10.45 51.08 1975 0.891 0.822 0.762 0.729 0.599 0.498 0.481 0.211 0.384 0.469 0.596 0.655 - 10.45 51.08 1976 0.886 0.856 0.678 0.502 0.299 0.509 0.110 0.141 0.120 0.423 0.551 0.685 - 10.45 51.08 1977 0.694 0.746 0.792 0.681 0.467 0.502 0.694 0.824 0.752 0.743 0.908 0.916 - 10.45 51.08 1978 0.865 0.810 0.726 0.547 0.582 0.351 0.440 0.485 0.575 0.806 0.720 0.788 - 10.45 51.08 1979 0.857 0.883 0.912 0.794 0.541 0.316 0.489 0.343 0.310 0.334 0.707 0.894 - 10.45 51.08 1980 0.880 0.823 0.664 0.626 0.462 0.307 0.440 0.162 0.235 0.466 0.647 0.843 - 10.45 51.08 1981 0.913 0.903 0.835 0.583 0.772 0.682 0.348 0.622 0.511 0.894 0.894 0.943 - 10.45 51.08 1982 0.920 0.867 0.671 0.470 0.437 0.196 0.223 0.186 0.081 0.451 0.526 0.580 - 10.45 51.08 1983 0.618 0.664 0.651 0.850 0.712 0.551 0.200 0.378 0.334 0.296 0.249 0.428 - 10.45 51.08 1984 0.590 0.833 0.743 0.784 0.732 0.725 0.550 0.641 0.740 0.848 0.860 0.911 - 10.45 51.08 1985 0.918 0.879 0.753 0.584 0.320 0.350 0.289 0.274 0.255 0.132 0.189 0.575 - 10.45 51.08 1986 0.868 0.863 0.845 0.869 0.638 0.671 0.231 0.298 0.509 0.589 0.837 0.772 - 10.45 51.08 1987 0.941 0.924 0.946 0.661 0.549 0.859 0.567 0.718 0.670 0.785 0.806 0.919 - 10.45 51.08 1988 0.892 0.858 0.885 0.698 0.281 0.227 0.527 0.239 0.166 0.177 0.291 0.798 - 10.45 51.08 1989 0.878 0.756 0.746 0.563 0.444 0.375 0.256 0.252 0.291 0.444 0.819 0.899 - 10.45 51.08 1990 0.886 0.800 0.783 0.624 0.383 0.582 0.473 0.233 0.453 0.376 0.565 0.805 - 10.45 51.08 1991 0.813 0.758 0.662 0.433 0.381 0.251 0.162 0.547 0.149 0.167 0.291 0.473 - 10.45 51.08 1992 0.762 0.739 0.749 0.672 0.346 0.345 0.571 0.220 0.416 0.389 0.709 0.932 - 10.45 51.08 1993 0.925 0.924 0.795 0.525 0.290 0.715 0.683 0.522 0.561 0.654 0.827 0.901 - 10.45 51.08 1994 0.917 0.871 0.844 0.748 0.578 0.560 0.494 0.402 0.670 0.652 0.757 0.917 - 10.45 51.08 1995 0.905 0.887 0.712 0.618 0.556 0.780 0.564 0.450 0.696 0.778 0.724 0.753 - 10.45 51.08 1996 0.828 0.830 0.726 0.576 0.715 0.539 0.646 0.647 0.744 0.735 0.899 0.914 - 10.45 51.08 1997 0.917 0.892 0.826 0.654 0.466 0.196 0.487 0.506 0.359 0.474 0.675 0.841 - 10.45 51.08 1998 0.863 0.761 0.736 0.559 0.495 0.382 0.391 0.231 0.636 0.901 0.930 0.884 - 10.45 51.08 1999 0.837 0.804 0.760 0.621 0.371 0.547 0.667 0.426 0.277 0.283 0.706 0.875 - 10.45 51.08 2000 0.897 0.907 0.867 0.647 0.337 0.190 0.350 0.327 0.554 0.656 0.643 0.652 - 10.45 51.08 2001 0.655 0.722 0.789 0.775 0.550 0.438 0.625 0.219 0.424 0.543 0.764 0.926 - 10.45 51.08 2002 0.891 0.838 0.863 0.676 0.730 0.678 0.617 0.709 0.584 0.795 0.919 0.923 - 10.45 51.08 2003 0.926 0.895 0.772 0.464 0.382 0.527 0.221 0.085 0.345 0.481 0.589 0.825 - 10.45 51.08 2004 0.857 0.862 0.695 0.535 0.793 0.436 0.510 0.193 0.199 0.287 0.527 0.820 - 10.45 51.08 2005 0.843 0.895 0.852 0.605 0.485 0.217 0.280 0.510 0.386 0.471 0.508 0.664 - 10.45 51.08 2006 0.700 0.678 0.773 0.676 0.492 0.569 0.445 0.466 0.482 0.491 0.614 0.637 - 10.45 51.08 2007 0.756 0.777 0.714 0.496 0.344 0.656 0.673 0.793 0.661 0.814 0.848 0.901 - 10.45 51.08 2008 0.850 0.755 0.743 0.778 0.442 0.260 0.348 0.151 0.246 0.532 0.802 0.910 - 10.45 51.08 2009 0.853 0.800 0.802 0.587 0.683 0.560 0.514 0.318 0.364 0.636 0.907 0.938 - 10.45 51.08 2010 0.949 0.949 0.802 0.523 0.690 0.461 0.436 0.839 0.705 0.870 0.915 0.941 - 10.45 51.08 2011 0.940 0.837 0.685 0.455 0.164 0.220 0.571 0.468 0.489 0.453 0.461 0.616 - 10.45 51.08 2012 0.865 0.853 0.637 0.421 0.347 0.522 0.648 0.374 0.265 0.325 0.479 0.860 diff --git a/rLPJGUESS/inst/extdata/outputsForTests/run_npatch/outDirectory/nflux.out b/rLPJGUESS/inst/extdata/outputsForTests/run_npatch/outDirectory/nflux.out deleted file mode 100644 index 9d4079d..0000000 --- a/rLPJGUESS/inst/extdata/outputsForTests/run_npatch/outDirectory/nflux.out +++ /dev/null @@ -1,63 +0,0 @@ - Lon Lat Year dep fix fert flux leach NEE - 10.45 51.08 1951 -11.23 -2.30 -0.00 2.15 0.25 -11.13 - 10.45 51.08 1952 -11.23 -2.14 -0.00 4.03 0.59 -8.75 - 10.45 51.08 1953 -11.23 -2.27 -0.00 3.29 0.25 -9.95 - 10.45 51.08 1954 -11.23 -2.50 -0.00 2.76 0.37 -10.59 - 10.45 51.08 1955 -11.23 -2.47 -0.00 1.97 0.42 -11.31 - 10.45 51.08 1956 -11.23 -2.65 -0.00 1.31 0.50 -12.07 - 10.45 51.08 1957 -11.23 -2.60 -0.00 2.34 0.53 -10.96 - 10.45 51.08 1958 -11.23 -2.42 -0.00 1.74 0.55 -11.36 - 10.45 51.08 1959 -11.23 -2.42 -0.00 4.84 0.12 -8.69 - 10.45 51.08 1960 -14.10 -2.71 -0.00 2.70 0.42 -13.70 - 10.45 51.08 1961 -14.10 -2.73 -0.00 3.08 0.46 -13.28 - 10.45 51.08 1962 -14.10 -2.77 -0.00 3.80 0.26 -12.81 - 10.45 51.08 1963 -14.10 -2.28 -0.00 2.38 0.30 -13.70 - 10.45 51.08 1964 -14.10 -2.00 -0.00 2.86 0.22 -13.02 - 10.45 51.08 1965 -14.10 -2.62 -0.00 1.72 0.41 -14.59 - 10.45 51.08 1966 -14.10 -2.54 -0.00 1.58 0.51 -14.56 - 10.45 51.08 1967 -14.10 -2.47 -0.00 2.06 0.49 -14.01 - 10.45 51.08 1968 -14.10 -2.16 -0.00 2.54 0.45 -13.27 - 10.45 51.08 1969 -14.10 -2.26 -0.00 2.43 0.47 -13.46 - 10.45 51.08 1970 -16.97 -2.39 -0.00 3.40 0.55 -15.41 - 10.45 51.08 1971 -16.97 -2.40 -0.00 4.96 0.19 -14.22 - 10.45 51.08 1972 -16.97 -2.72 -0.00 1.28 0.19 -18.22 - 10.45 51.08 1973 -16.97 -2.19 -0.00 4.25 0.28 -14.63 - 10.45 51.08 1974 -16.97 -2.69 -0.00 1.38 0.39 -17.89 - 10.45 51.08 1975 -16.97 -2.23 -0.00 3.20 0.27 -15.73 - 10.45 51.08 1976 -16.97 -2.24 -0.00 4.62 0.14 -14.45 - 10.45 51.08 1977 -16.97 -2.01 -0.00 1.87 0.43 -16.69 - 10.45 51.08 1978 -16.97 -2.66 -0.00 2.90 0.40 -16.33 - 10.45 51.08 1979 -16.97 -2.34 -0.00 4.01 0.42 -14.88 - 10.45 51.08 1980 -17.99 -2.45 -0.00 4.26 0.30 -15.88 - 10.45 51.08 1981 -17.99 -2.39 -0.00 2.05 0.43 -17.90 - 10.45 51.08 1982 -17.99 -2.00 -0.00 5.17 0.20 -14.63 - 10.45 51.08 1983 -17.99 -1.97 -0.00 4.16 0.19 -15.61 - 10.45 51.08 1984 -17.99 -2.55 -0.00 1.39 0.37 -18.79 - 10.45 51.08 1985 -17.99 -2.31 -0.00 5.55 0.20 -14.55 - 10.45 51.08 1986 -17.99 -2.18 -0.00 3.60 0.29 -16.29 - 10.45 51.08 1987 -17.99 -2.60 -0.00 1.37 0.41 -18.82 - 10.45 51.08 1988 -17.99 -2.27 -0.00 95.09 0.56 75.39 - 10.45 51.08 1989 -17.99 -1.92 -0.00 3.42 0.27 -16.23 - 10.45 51.08 1990 -19.66 -2.50 -0.00 3.46 0.38 -18.31 - 10.45 51.08 1991 -19.66 -2.48 -0.00 4.27 0.14 -17.72 - 10.45 51.08 1992 -19.66 -1.82 -0.00 3.47 0.34 -17.67 - 10.45 51.08 1993 -19.66 -2.10 -0.00 2.35 0.42 -18.98 - 10.45 51.08 1994 -19.66 -2.09 -0.00 2.16 0.50 -19.10 - 10.45 51.08 1995 -19.66 -2.33 -0.00 1.56 0.44 -19.99 - 10.45 51.08 1996 -19.66 -2.72 -0.00 1.30 0.42 -20.66 - 10.45 51.08 1997 -19.66 -2.62 -0.00 3.42 0.50 -18.36 - 10.45 51.08 1998 -19.66 -2.77 -0.00 2.97 0.41 -19.04 - 10.45 51.08 1999 -19.66 -2.44 -0.00 2.85 0.32 -18.92 - 10.45 51.08 2000 -21.34 -2.45 -0.00 3.41 0.38 -20.00 - 10.45 51.08 2001 -21.34 -2.49 -0.00 2.75 0.38 -20.70 - 10.45 51.08 2002 -21.34 -2.73 -0.00 1.39 0.65 -22.03 - 10.45 51.08 2003 -21.34 -2.07 -0.00 3.80 0.26 -19.35 - 10.45 51.08 2004 -21.34 -2.58 -0.00 3.16 0.19 -20.58 - 10.45 51.08 2005 -21.34 -2.51 -0.00 3.07 0.23 -20.55 - 10.45 51.08 2006 -21.34 -2.30 -0.00 2.52 0.22 -20.90 - 10.45 51.08 2007 -21.34 -2.31 -0.00 1.84 0.34 -21.47 - 10.45 51.08 2008 -21.34 -2.58 -0.00 3.24 0.34 -20.35 - 10.45 51.08 2009 -21.34 -2.24 -0.00 2.38 0.35 -20.85 - 10.45 51.08 2010 -20.03 -2.64 -0.00 2.00 0.38 -20.28 - 10.45 51.08 2011 -20.03 -2.45 -0.00 3.09 0.30 -19.09 - 10.45 51.08 2012 -20.03 -2.50 -0.00 2.68 0.23 -19.62 diff --git a/rLPJGUESS/inst/extdata/outputsForTests/run_npatch/outDirectory/ngases.out b/rLPJGUESS/inst/extdata/outputsForTests/run_npatch/outDirectory/ngases.out deleted file mode 100644 index 621fd8b..0000000 --- a/rLPJGUESS/inst/extdata/outputsForTests/run_npatch/outDirectory/ngases.out +++ /dev/null @@ -1,63 +0,0 @@ - Lon Lat Year NH3 NO NO2 N2O N2 NSoil Total - 10.45 51.08 1951 0.278 0.357 0.090 0.041 0.413 0.972 2.151 - 10.45 51.08 1952 0.674 0.865 0.217 0.100 0.999 1.172 4.027 - 10.45 51.08 1953 0.501 0.643 0.161 0.074 0.743 1.170 3.293 - 10.45 51.08 1954 0.408 0.524 0.131 0.061 0.605 1.034 2.763 - 10.45 51.08 1955 0.242 0.310 0.078 0.036 0.358 0.947 1.971 - 10.45 51.08 1956 0.102 0.131 0.033 0.015 0.151 0.881 1.313 - 10.45 51.08 1957 0.288 0.370 0.093 0.043 0.428 1.118 2.339 - 10.45 51.08 1958 0.163 0.209 0.052 0.024 0.241 1.055 1.744 - 10.45 51.08 1959 0.871 1.118 0.280 0.129 1.291 1.151 4.839 - 10.45 51.08 1960 0.417 0.536 0.134 0.062 0.619 0.931 2.700 - 10.45 51.08 1961 0.478 0.614 0.154 0.071 0.709 1.058 3.084 - 10.45 51.08 1962 0.665 0.854 0.214 0.099 0.986 0.979 3.796 - 10.45 51.08 1963 0.336 0.431 0.108 0.050 0.498 0.958 2.381 - 10.45 51.08 1964 0.418 0.536 0.135 0.062 0.620 1.093 2.863 - 10.45 51.08 1965 0.208 0.267 0.067 0.031 0.309 0.839 1.722 - 10.45 51.08 1966 0.157 0.202 0.051 0.023 0.233 0.911 1.577 - 10.45 51.08 1967 0.238 0.305 0.077 0.035 0.353 1.056 2.063 - 10.45 51.08 1968 0.390 0.501 0.126 0.058 0.579 0.886 2.539 - 10.45 51.08 1969 0.365 0.469 0.118 0.054 0.542 0.883 2.431 - 10.45 51.08 1970 0.574 0.737 0.185 0.085 0.851 0.971 3.402 - 10.45 51.08 1971 0.912 1.172 0.294 0.135 1.353 1.089 4.955 - 10.45 51.08 1972 0.123 0.158 0.040 0.018 0.183 0.759 1.280 - 10.45 51.08 1973 0.722 0.927 0.233 0.107 1.071 1.186 4.246 - 10.45 51.08 1974 0.118 0.152 0.038 0.018 0.175 0.875 1.376 - 10.45 51.08 1975 0.471 0.605 0.152 0.070 0.698 1.203 3.199 - 10.45 51.08 1976 0.819 1.051 0.264 0.121 1.214 1.148 4.618 - 10.45 51.08 1977 0.292 0.375 0.094 0.043 0.433 0.632 1.869 - 10.45 51.08 1978 0.467 0.599 0.150 0.069 0.692 0.927 2.904 - 10.45 51.08 1979 0.680 0.873 0.219 0.101 1.009 1.125 4.008 - 10.45 51.08 1980 0.769 0.988 0.248 0.114 1.141 1.005 4.265 - 10.45 51.08 1981 0.272 0.349 0.088 0.040 0.403 0.895 2.047 - 10.45 51.08 1982 0.914 1.173 0.294 0.136 1.355 1.294 5.166 - 10.45 51.08 1983 0.734 0.943 0.236 0.109 1.089 1.049 4.160 - 10.45 51.08 1984 0.126 0.162 0.041 0.019 0.188 0.852 1.388 - 10.45 51.08 1985 1.037 1.331 0.334 0.154 1.538 1.155 5.549 - 10.45 51.08 1986 0.594 0.763 0.191 0.088 0.881 1.079 3.596 - 10.45 51.08 1987 0.120 0.154 0.039 0.018 0.178 0.858 1.366 - 10.45 51.08 1988 22.137 28.422 7.129 3.283 32.831 1.291 95.093 - 10.45 51.08 1989 0.554 0.711 0.178 0.082 0.821 1.069 3.416 - 10.45 51.08 1990 0.562 0.721 0.181 0.083 0.833 1.081 3.462 - 10.45 51.08 1991 0.720 0.924 0.232 0.107 1.067 1.220 4.270 - 10.45 51.08 1992 0.549 0.705 0.177 0.081 0.814 1.140 3.466 - 10.45 51.08 1993 0.325 0.418 0.105 0.048 0.483 0.976 2.355 - 10.45 51.08 1994 0.223 0.287 0.072 0.033 0.331 1.210 2.157 - 10.45 51.08 1995 0.123 0.158 0.040 0.018 0.183 1.036 1.559 - 10.45 51.08 1996 0.098 0.126 0.032 0.015 0.145 0.881 1.295 - 10.45 51.08 1997 0.509 0.653 0.164 0.075 0.755 1.259 3.415 - 10.45 51.08 1998 0.419 0.538 0.135 0.062 0.622 1.193 2.970 - 10.45 51.08 1999 0.392 0.504 0.126 0.058 0.582 1.190 2.853 - 10.45 51.08 2000 0.499 0.641 0.161 0.074 0.741 1.293 3.409 - 10.45 51.08 2001 0.373 0.479 0.120 0.055 0.554 1.169 2.751 - 10.45 51.08 2002 0.088 0.113 0.028 0.013 0.131 1.015 1.389 - 10.45 51.08 2003 0.564 0.724 0.182 0.084 0.836 1.412 3.802 - 10.45 51.08 2004 0.477 0.613 0.154 0.071 0.708 1.139 3.160 - 10.45 51.08 2005 0.434 0.557 0.140 0.064 0.643 1.232 3.068 - 10.45 51.08 2006 0.309 0.396 0.099 0.046 0.458 1.215 2.522 - 10.45 51.08 2007 0.188 0.241 0.061 0.028 0.279 1.047 1.843 - 10.45 51.08 2008 0.455 0.585 0.147 0.068 0.675 1.311 3.241 - 10.45 51.08 2009 0.295 0.378 0.095 0.044 0.437 1.136 2.385 - 10.45 51.08 2010 0.235 0.301 0.076 0.035 0.348 1.002 1.996 - 10.45 51.08 2011 0.431 0.553 0.139 0.064 0.639 1.260 3.086 - 10.45 51.08 2012 0.353 0.453 0.114 0.052 0.524 1.186 2.682 diff --git a/rLPJGUESS/inst/extdata/outputsForTests/run_npatch/outDirectory/nlitter.out b/rLPJGUESS/inst/extdata/outputsForTests/run_npatch/outDirectory/nlitter.out deleted file mode 100644 index 2a20e13..0000000 --- a/rLPJGUESS/inst/extdata/outputsForTests/run_npatch/outDirectory/nlitter.out +++ /dev/null @@ -1,63 +0,0 @@ - Lon Lat Year Abi_alb BES Bet_pen Bet_pub Car_bet Cor_ave Fag_syl Fra_exc Jun_oxy MRS Pic_abi Pic_sit Pin_syl Pin_hal Pop_tre Que_coc Que_ile Que_pub Que_rob Til_cor Ulm_gla C3_gr C4_gr Total - 10.45 51.08 1951 0.00 0.28 5.33 19.47 5.32 1.31 37.92 6.52 0.00 0.00 0.14 0.32 0.38 0.00 3.70 0.00 0.00 1.12 7.04 4.39 4.78 0.00 0.00 98.05 - 10.45 51.08 1952 0.00 0.20 6.18 19.61 5.35 1.39 39.97 7.25 0.00 0.00 0.14 0.25 0.28 0.00 3.76 0.00 0.00 1.12 6.32 4.11 4.81 0.00 0.00 100.74 - 10.45 51.08 1953 0.00 0.08 5.05 41.67 5.68 1.06 37.86 9.59 0.00 0.00 0.13 0.18 0.26 0.00 3.03 0.00 0.00 1.12 6.33 4.46 4.94 0.00 0.00 121.44 - 10.45 51.08 1954 0.00 0.08 4.83 20.32 5.68 1.21 38.30 6.53 0.00 0.00 0.12 0.12 0.24 0.00 3.54 0.00 0.00 1.14 6.01 4.24 4.98 0.00 0.00 97.33 - 10.45 51.08 1955 0.00 0.07 4.61 19.81 5.28 1.32 55.68 6.73 0.00 0.00 0.11 0.10 0.21 0.00 3.19 0.00 0.00 1.15 5.98 3.81 5.00 0.00 0.00 113.03 - 10.45 51.08 1956 0.00 0.03 4.15 20.48 5.99 0.80 35.69 6.61 0.00 0.00 0.10 0.07 0.18 0.00 2.79 0.00 0.00 1.15 6.06 3.59 5.44 0.00 0.00 93.14 - 10.45 51.08 1957 0.00 0.05 4.00 22.87 5.12 0.70 36.46 6.68 0.00 0.00 0.09 0.03 0.17 0.00 3.13 0.00 0.00 2.16 6.34 3.89 5.00 0.00 0.00 96.71 - 10.45 51.08 1958 0.00 0.00 4.16 21.49 5.46 0.55 148.39 6.38 0.00 0.00 0.09 0.01 0.19 0.00 2.81 0.00 0.00 0.94 5.70 3.58 5.22 0.00 0.00 204.97 - 10.45 51.08 1959 0.00 0.00 4.16 22.97 5.39 0.62 29.83 6.74 0.00 0.00 0.08 0.13 0.11 0.00 2.38 0.00 0.00 1.00 5.66 3.54 4.48 0.00 0.00 87.10 - 10.45 51.08 1960 0.00 0.00 2.44 23.84 5.15 0.32 32.49 6.05 0.00 0.00 0.12 0.01 0.08 0.00 1.58 0.00 0.00 2.12 6.80 3.27 4.95 5.97 0.00 95.20 - 10.45 51.08 1961 0.00 0.00 2.04 25.71 5.77 0.40 33.17 5.99 0.00 0.00 0.06 0.00 0.06 0.00 1.79 0.00 0.00 0.87 5.33 3.19 4.36 2.76 0.00 91.52 - 10.45 51.08 1962 0.00 0.00 2.44 23.56 5.26 0.41 33.58 5.71 0.00 0.00 0.06 0.02 0.04 0.00 1.23 0.00 0.00 0.93 5.47 3.04 5.07 0.42 0.00 87.23 - 10.45 51.08 1963 0.00 0.00 2.45 25.75 5.28 0.27 35.02 6.36 0.00 0.00 0.07 0.00 0.24 0.00 1.64 0.00 0.00 0.94 5.69 2.88 4.22 0.23 0.00 91.05 - 10.45 51.08 1964 0.00 0.00 2.19 27.81 4.14 0.09 35.19 5.41 0.00 0.00 0.07 0.02 0.00 0.00 0.82 0.00 0.00 0.94 5.16 2.82 4.10 0.09 0.00 88.86 - 10.45 51.08 1965 0.00 0.00 1.58 53.29 4.32 0.21 35.40 5.35 0.00 0.00 0.07 0.00 0.00 0.00 0.55 0.00 0.00 0.95 5.80 2.44 4.08 0.05 0.00 114.08 - 10.45 51.08 1966 0.00 0.00 1.68 25.21 3.91 0.11 36.45 5.89 0.00 0.00 0.07 0.01 0.00 0.00 0.52 0.00 0.00 0.95 5.24 2.52 4.02 0.03 0.00 86.61 - 10.45 51.08 1967 0.00 0.00 1.13 26.33 5.21 0.10 176.21 7.23 0.00 0.00 0.46 0.05 0.05 0.00 0.89 0.00 0.00 0.98 26.86 2.06 5.05 1.05 0.00 253.67 - 10.45 51.08 1968 0.00 0.00 1.09 29.65 4.10 0.02 24.85 5.23 0.00 0.00 0.02 0.00 0.00 0.00 0.78 0.00 0.00 0.99 4.67 2.19 3.78 0.00 0.00 77.37 - 10.45 51.08 1969 0.00 0.02 1.80 26.32 3.85 0.17 25.16 5.59 0.00 0.00 0.04 0.04 0.05 0.00 0.64 0.00 0.00 1.00 5.09 2.01 4.25 8.54 0.00 84.57 - 10.45 51.08 1970 0.00 0.07 1.97 28.13 3.96 0.34 25.58 5.20 0.00 0.00 0.07 0.07 0.09 0.00 1.15 0.00 0.00 1.00 4.75 2.24 4.27 17.21 0.00 96.09 - 10.45 51.08 1971 0.00 0.10 1.70 28.76 4.40 0.37 25.84 5.92 0.00 0.00 0.10 0.11 0.14 0.00 0.80 0.00 0.00 0.98 5.51 2.46 4.29 16.61 0.00 98.09 - 10.45 51.08 1972 0.00 0.14 1.06 32.51 4.88 0.57 26.22 5.53 0.00 0.00 0.13 0.17 0.20 0.00 1.38 0.00 0.00 0.98 5.87 3.12 4.31 8.88 0.00 95.94 - 10.45 51.08 1973 0.00 0.18 1.78 32.79 5.01 0.89 26.58 5.82 0.00 0.00 0.17 0.22 0.26 0.00 1.63 0.00 0.00 0.97 5.47 2.60 4.40 3.16 0.00 91.92 - 10.45 51.08 1974 0.00 0.20 1.98 32.21 6.16 1.15 26.83 5.11 0.00 0.00 0.21 0.26 0.31 0.00 2.37 0.00 0.00 0.95 5.26 2.31 4.21 5.92 0.00 95.45 - 10.45 51.08 1975 0.00 0.21 1.80 34.71 4.76 1.37 27.21 6.05 0.00 0.00 0.23 0.38 0.35 0.00 2.79 0.00 0.00 0.96 5.22 2.65 5.96 0.00 0.00 94.64 - 10.45 51.08 1976 0.00 0.18 2.48 113.94 8.43 1.52 34.04 10.06 0.00 0.00 0.24 0.28 0.37 0.00 3.09 0.00 0.00 0.94 10.15 4.12 8.81 0.00 0.00 198.66 - 10.45 51.08 1977 0.00 0.22 2.12 20.32 4.88 1.59 25.59 4.57 0.00 0.00 0.25 0.27 0.36 0.00 3.25 0.00 0.00 0.90 6.26 3.05 3.84 0.00 0.00 77.48 - 10.45 51.08 1978 0.00 0.18 2.31 18.03 4.70 1.66 25.59 6.37 0.00 0.00 0.24 0.26 0.39 0.00 3.70 0.00 0.00 0.90 4.58 3.15 4.36 8.54 0.00 84.96 - 10.45 51.08 1979 0.00 0.24 2.93 19.38 5.69 1.77 25.81 6.38 0.00 0.00 0.25 0.27 0.43 0.00 3.62 0.00 0.00 0.90 5.30 3.54 4.51 16.11 0.00 97.12 - 10.45 51.08 1980 0.00 0.29 2.72 51.59 5.74 1.79 51.68 4.63 0.00 0.00 0.27 0.29 0.48 0.00 3.65 0.00 0.00 0.89 5.21 2.90 4.27 16.66 0.00 153.07 - 10.45 51.08 1981 0.00 0.39 3.61 20.30 5.74 1.80 22.99 5.32 0.00 0.00 0.30 0.32 0.55 0.00 3.77 0.00 0.00 0.87 5.23 3.38 4.66 9.93 0.00 89.15 - 10.45 51.08 1982 0.00 0.19 3.41 21.31 6.72 2.11 24.39 5.39 0.00 0.00 0.31 0.33 0.58 0.00 4.59 0.00 0.00 0.90 5.69 3.82 5.00 2.15 0.00 86.89 - 10.45 51.08 1983 0.00 0.26 4.59 54.95 7.26 2.23 25.57 6.87 0.00 0.00 0.33 0.33 0.65 0.00 4.58 0.00 0.00 0.90 6.30 4.64 5.44 8.54 0.00 133.44 - 10.45 51.08 1984 0.00 0.23 3.98 22.14 6.97 2.16 25.05 5.99 0.00 0.00 0.32 0.29 0.64 0.00 4.88 0.00 0.00 0.90 6.56 4.65 6.53 1.40 0.00 92.71 - 10.45 51.08 1985 0.00 0.28 4.45 23.04 7.00 2.33 25.42 5.65 0.00 0.00 0.31 0.27 0.64 0.00 5.03 0.00 0.00 0.90 6.24 4.64 5.91 0.50 0.00 92.60 - 10.45 51.08 1986 0.00 0.23 4.68 23.78 7.56 2.05 26.10 6.42 0.00 0.00 0.31 0.27 0.62 0.00 5.32 0.00 0.00 0.92 7.21 4.94 6.34 0.33 0.00 97.07 - 10.45 51.08 1987 0.00 0.27 4.97 26.13 7.88 1.92 26.65 6.17 0.00 0.00 0.30 0.18 0.56 0.00 4.86 0.00 0.00 2.44 6.62 5.31 6.59 0.12 0.00 100.98 - 10.45 51.08 1988 0.00 0.18 4.85 31.13 8.42 1.92 27.65 6.91 0.00 0.00 0.27 0.18 0.55 0.00 5.67 0.00 0.00 0.75 7.24 5.39 7.34 0.06 0.00 108.52 - 10.45 51.08 1989 0.00 0.13 4.75 14.64 8.28 1.60 25.03 5.30 0.00 0.00 0.27 0.14 0.47 0.00 4.63 0.00 0.00 0.80 7.67 5.02 5.95 0.03 0.00 84.70 - 10.45 51.08 1990 0.00 0.09 3.90 15.51 7.38 1.68 25.82 5.11 0.00 0.00 0.25 0.11 0.46 0.00 3.85 0.00 0.00 0.83 5.87 4.00 6.43 8.75 0.00 90.06 - 10.45 51.08 1991 0.00 0.03 4.63 14.82 7.58 1.41 27.33 5.34 0.00 0.00 0.36 0.09 0.37 0.00 3.61 0.00 0.00 0.89 7.94 4.57 5.66 18.63 0.00 103.28 - 10.45 51.08 1992 0.00 0.03 4.19 16.76 7.44 1.28 27.36 5.40 0.00 0.00 0.20 0.05 0.32 0.00 4.61 0.00 0.00 0.93 6.05 3.94 6.33 14.20 0.00 99.11 - 10.45 51.08 1993 0.00 0.05 3.65 17.76 7.45 1.03 27.83 5.77 0.00 0.00 0.21 0.05 0.30 0.00 3.20 0.00 0.00 0.95 5.81 3.55 6.20 10.69 0.00 94.51 - 10.45 51.08 1994 0.00 0.02 3.20 18.98 7.62 0.80 28.72 5.92 0.00 0.00 0.21 0.03 0.28 0.00 2.99 0.00 0.00 1.01 6.52 4.21 6.01 5.57 0.00 92.09 - 10.45 51.08 1995 0.00 0.02 3.50 20.84 7.80 0.80 29.75 6.72 0.00 0.00 0.21 0.03 0.23 0.00 2.98 0.00 0.00 1.06 6.63 4.02 6.73 0.38 0.00 91.70 - 10.45 51.08 1996 0.00 0.02 3.67 23.36 8.24 0.78 30.46 6.74 0.00 0.00 0.21 0.03 0.48 0.00 3.41 0.00 0.00 1.10 7.13 3.96 7.09 6.62 0.00 103.28 - 10.45 51.08 1997 0.00 0.02 2.93 23.51 9.11 0.82 30.91 7.27 0.00 0.00 0.20 0.04 0.18 0.00 3.42 0.00 0.00 1.13 7.57 4.11 7.37 0.00 0.00 98.58 - 10.45 51.08 1998 0.00 0.02 2.89 25.71 8.49 0.76 31.85 7.13 0.00 0.00 0.28 0.03 0.16 0.00 3.72 0.00 0.00 1.15 7.56 3.94 7.62 0.00 0.00 101.31 - 10.45 51.08 1999 0.00 0.02 3.01 27.15 9.18 0.68 32.01 7.30 0.00 0.00 0.19 0.04 0.12 0.00 3.00 0.00 0.00 1.18 7.47 4.17 7.86 0.86 0.00 104.23 - 10.45 51.08 2000 0.00 0.05 2.81 28.73 7.94 1.21 32.64 7.85 0.00 0.00 0.20 0.03 0.40 0.00 2.59 0.00 0.00 1.20 7.55 3.86 8.04 0.00 0.00 105.10 - 10.45 51.08 2001 0.00 0.00 2.89 30.12 8.26 0.60 33.10 7.31 0.00 0.00 0.20 0.05 0.05 0.00 2.04 0.00 0.00 1.20 7.68 3.65 8.06 0.00 0.00 105.22 - 10.45 51.08 2002 0.00 0.00 3.40 31.75 7.83 0.43 33.40 8.04 0.00 0.00 0.20 0.03 0.05 0.00 1.58 0.00 0.00 1.20 7.42 3.32 7.99 0.00 0.00 106.64 - 10.45 51.08 2003 0.00 0.00 2.12 30.59 8.09 0.45 33.31 8.10 0.00 0.00 0.20 0.03 0.04 0.00 1.96 0.00 0.00 1.18 6.81 3.91 8.05 0.00 0.00 104.85 - 10.45 51.08 2004 0.00 0.00 2.01 33.12 7.00 0.19 33.53 6.48 0.00 0.00 0.21 0.03 0.04 0.00 2.09 0.00 0.00 2.94 6.33 2.98 7.25 0.00 0.00 104.19 - 10.45 51.08 2005 0.00 0.00 1.93 34.64 7.36 0.18 33.98 6.91 0.00 0.00 0.21 0.11 0.04 0.00 1.25 0.00 0.00 2.83 6.60 2.56 8.20 0.00 0.00 106.79 - 10.45 51.08 2006 0.00 0.00 2.06 34.20 6.65 0.17 34.47 8.42 0.00 0.00 0.22 0.01 0.03 0.00 1.52 0.00 0.00 0.87 6.31 2.33 6.88 0.00 0.00 104.14 - 10.45 51.08 2007 0.00 0.00 0.90 32.79 6.54 0.15 34.74 6.35 0.00 0.00 0.21 0.01 0.03 0.00 0.54 0.00 0.00 0.84 5.81 2.62 7.84 0.00 0.00 99.37 - 10.45 51.08 2008 0.00 0.00 1.74 34.06 7.86 0.21 34.97 6.75 0.00 0.00 0.23 0.01 0.03 0.00 1.03 0.00 0.00 0.84 5.98 1.94 7.40 0.00 0.00 103.06 - 10.45 51.08 2009 0.00 0.00 0.85 35.84 6.76 0.11 35.14 6.25 0.00 0.00 0.24 0.01 0.03 0.00 0.37 0.00 0.00 0.82 5.03 2.18 6.93 0.00 0.00 100.57 - 10.45 51.08 2010 0.00 0.00 0.77 35.71 7.17 0.27 35.21 6.75 0.00 0.00 0.25 0.01 0.02 0.00 0.56 0.00 0.00 0.80 5.24 1.87 6.36 0.00 0.00 100.98 - 10.45 51.08 2011 0.00 0.00 0.49 36.16 5.62 0.05 35.13 5.88 0.00 0.00 0.24 0.01 0.02 0.00 0.61 0.00 0.00 0.76 4.94 1.57 6.32 0.00 0.00 97.81 - 10.45 51.08 2012 0.00 0.00 1.09 39.80 5.72 0.04 35.38 6.58 0.00 0.00 0.26 0.01 0.02 0.00 0.26 0.00 0.00 0.95 4.76 1.75 6.57 0.00 0.00 103.19 diff --git a/rLPJGUESS/inst/extdata/outputsForTests/run_npatch/outDirectory/nmass.out b/rLPJGUESS/inst/extdata/outputsForTests/run_npatch/outDirectory/nmass.out deleted file mode 100644 index 50607f6..0000000 --- a/rLPJGUESS/inst/extdata/outputsForTests/run_npatch/outDirectory/nmass.out +++ /dev/null @@ -1,63 +0,0 @@ - Lon Lat Year Abi_alb BES Bet_pen Bet_pub Car_bet Cor_ave Fag_syl Fra_exc Jun_oxy MRS Pic_abi Pic_sit Pin_syl Pin_hal Pop_tre Que_coc Que_ile Que_pub Que_rob Til_cor Ulm_gla C3_gr C4_gr Total - 10.45 51.08 1951 0.00 0.60 16.02 135.14 18.86 3.75 392.23 26.56 0.00 0.00 0.62 0.93 0.88 0.00 9.72 0.00 0.00 8.51 44.93 12.38 15.73 0.00 0.00 686.85 - 10.45 51.08 1952 0.00 0.41 16.16 140.06 19.44 3.67 397.53 27.28 0.00 0.00 0.61 0.81 0.77 0.00 9.63 0.00 0.00 8.63 44.58 12.44 16.29 0.00 0.00 698.32 - 10.45 51.08 1953 0.00 0.26 14.80 145.06 19.95 3.35 400.97 27.21 0.00 0.00 0.60 0.67 0.73 0.00 9.15 0.00 0.00 8.71 44.77 12.64 16.82 0.00 0.00 705.68 - 10.45 51.08 1954 0.00 0.21 14.33 127.56 20.16 3.28 407.83 24.73 0.00 0.00 0.58 0.56 0.69 0.00 9.37 0.00 0.00 8.88 45.01 12.35 17.31 0.00 0.00 692.85 - 10.45 51.08 1955 0.00 0.15 13.63 130.93 20.08 2.84 412.45 25.05 0.00 0.00 0.57 0.49 0.64 0.00 8.73 0.00 0.00 9.01 45.34 11.93 17.59 0.00 0.00 699.45 - 10.45 51.08 1956 0.00 0.09 12.83 136.08 20.44 2.18 397.35 25.13 0.00 0.00 0.55 0.42 0.60 0.00 8.20 0.00 0.00 9.12 45.70 11.90 17.91 0.00 0.00 688.51 - 10.45 51.08 1957 0.00 0.05 12.30 141.80 20.08 1.94 403.55 25.36 0.00 0.00 0.54 0.37 0.57 0.00 7.92 0.00 0.00 9.25 45.96 12.13 17.67 0.00 0.00 699.49 - 10.45 51.08 1958 0.00 0.00 11.76 146.72 20.71 1.72 409.98 25.44 0.00 0.00 0.52 0.33 0.54 0.00 6.97 0.00 0.00 8.19 45.83 11.92 17.92 0.00 0.00 708.56 - 10.45 51.08 1959 0.00 0.00 10.60 153.26 20.84 1.58 297.07 25.66 0.00 0.00 0.50 0.33 0.46 0.00 5.97 0.00 0.00 8.34 46.26 11.89 17.70 0.00 0.00 600.45 - 10.45 51.08 1960 0.00 0.00 8.77 158.51 20.80 1.28 307.76 25.22 0.00 0.00 0.49 0.20 0.40 0.00 5.01 0.00 0.00 8.56 46.75 11.65 18.08 9.58 0.00 623.05 - 10.45 51.08 1961 0.00 0.00 8.48 164.10 20.87 1.22 314.48 25.33 0.00 0.00 0.43 0.19 0.36 0.00 4.75 0.00 0.00 7.45 45.76 11.45 17.78 5.17 0.00 627.82 - 10.45 51.08 1962 0.00 0.00 8.60 168.09 20.26 1.02 321.03 25.61 0.00 0.00 0.44 0.19 0.33 0.00 4.08 0.00 0.00 7.62 46.44 11.26 18.26 2.60 0.00 635.82 - 10.45 51.08 1963 0.00 0.00 8.02 175.38 19.68 0.74 328.51 25.85 0.00 0.00 0.45 0.17 0.29 0.00 3.78 0.00 0.00 7.74 46.71 10.94 17.55 2.37 0.00 648.19 - 10.45 51.08 1964 0.00 0.00 7.19 181.04 18.75 0.56 335.11 25.20 0.00 0.00 0.46 0.17 0.05 0.00 2.80 0.00 0.00 7.83 46.54 10.59 17.67 2.20 0.00 656.15 - 10.45 51.08 1965 0.00 0.00 6.40 183.67 18.87 0.54 341.63 25.43 0.00 0.00 0.47 0.16 0.05 0.00 2.54 0.00 0.00 7.95 46.82 10.06 17.84 2.15 0.00 664.58 - 10.45 51.08 1966 0.00 0.00 6.16 160.93 18.76 0.38 349.07 25.79 0.00 0.00 0.48 0.16 0.05 0.00 2.54 0.00 0.00 8.05 46.35 9.87 18.11 2.12 0.00 648.81 - 10.45 51.08 1967 0.00 0.00 5.71 168.36 19.28 0.30 357.25 25.72 0.00 0.00 0.49 0.15 0.05 0.00 2.58 0.00 0.00 8.23 46.63 9.55 18.65 2.09 0.00 665.05 - 10.45 51.08 1968 0.00 0.00 5.74 175.19 18.23 0.22 209.88 24.14 0.00 0.00 0.04 0.10 0.00 0.00 2.10 0.00 0.00 8.34 24.82 9.57 17.74 1.04 0.00 497.16 - 10.45 51.08 1969 0.00 0.11 5.89 178.88 18.30 0.39 214.44 24.61 0.00 0.00 0.10 0.19 0.10 0.00 1.89 0.00 0.00 8.49 25.30 9.50 18.18 13.91 0.00 520.27 - 10.45 51.08 1970 0.00 0.21 5.31 186.70 18.79 0.59 218.95 24.68 0.00 0.00 0.16 0.27 0.18 0.00 2.06 0.00 0.00 8.57 25.40 9.72 18.22 26.85 0.00 546.67 - 10.45 51.08 1971 0.00 0.32 4.62 193.76 19.42 0.89 222.94 25.20 0.00 0.00 0.23 0.38 0.30 0.00 2.13 0.00 0.00 8.63 26.01 9.84 18.35 25.73 0.00 558.73 - 10.45 51.08 1972 0.00 0.44 4.34 200.43 19.84 1.46 227.63 24.90 0.00 0.00 0.32 0.50 0.45 0.00 3.12 0.00 0.00 8.73 25.91 9.94 18.51 16.22 0.00 562.73 - 10.45 51.08 1973 0.00 0.56 5.14 205.87 20.21 2.22 232.05 25.23 0.00 0.00 0.42 0.65 0.61 0.00 4.26 0.00 0.00 8.80 25.65 9.55 18.96 9.08 0.00 569.25 - 10.45 51.08 1974 0.00 0.61 5.39 209.30 20.51 2.86 235.84 25.02 0.00 0.00 0.51 0.76 0.74 0.00 5.64 0.00 0.00 8.85 25.75 9.77 19.32 5.92 0.00 576.78 - 10.45 51.08 1975 0.00 0.62 5.74 217.76 19.97 3.47 240.60 26.04 0.00 0.00 0.57 0.82 0.83 0.00 6.83 0.00 0.00 8.97 26.61 10.62 20.40 0.00 0.00 589.87 - 10.45 51.08 1976 0.00 0.60 6.34 222.68 20.86 3.87 244.04 25.93 0.00 0.00 0.60 0.73 0.88 0.00 7.65 0.00 0.00 9.02 27.53 11.15 19.52 0.00 0.00 601.39 - 10.45 51.08 1977 0.00 0.58 6.24 129.90 17.38 4.03 239.33 20.71 0.00 0.00 0.60 0.69 0.88 0.00 8.03 0.00 0.00 9.03 22.50 9.97 14.83 0.00 0.00 484.70 - 10.45 51.08 1978 0.00 0.61 6.80 131.76 17.81 4.26 242.88 21.32 0.00 0.00 0.61 0.69 0.96 0.00 8.53 0.00 0.00 9.12 21.45 10.06 15.45 12.86 0.00 505.17 - 10.45 51.08 1979 0.00 0.69 7.54 138.11 18.91 4.49 246.74 20.24 0.00 0.00 0.64 0.72 1.06 0.00 8.78 0.00 0.00 9.20 22.46 10.34 15.82 25.72 0.00 531.48 - 10.45 51.08 1980 0.00 0.75 7.92 143.15 19.29 4.68 249.94 19.12 0.00 0.00 0.68 0.77 1.18 0.00 9.23 0.00 0.00 9.28 22.89 10.31 16.19 25.76 0.00 541.15 - 10.45 51.08 1981 0.00 0.78 9.08 116.83 20.07 5.00 225.17 20.14 0.00 0.00 0.75 0.85 1.36 0.00 10.03 0.00 0.00 9.33 23.66 11.40 17.26 17.45 0.00 489.17 - 10.45 51.08 1982 0.00 0.67 9.86 124.05 21.77 5.58 231.64 21.06 0.00 0.00 0.79 0.87 1.47 0.00 11.49 0.00 0.00 9.50 25.16 12.82 18.67 8.02 0.00 503.41 - 10.45 51.08 1983 0.00 0.76 11.02 128.24 22.48 5.82 235.95 21.72 0.00 0.00 0.85 0.89 1.63 0.00 11.99 0.00 0.00 9.59 26.05 13.95 19.75 10.14 0.00 520.83 - 10.45 51.08 1984 0.00 0.74 11.35 100.16 23.19 5.92 240.36 21.31 0.00 0.00 0.83 0.82 1.66 0.00 12.88 0.00 0.00 9.69 26.81 14.43 20.98 2.59 0.00 493.72 - 10.45 51.08 1985 0.00 0.73 12.18 105.16 24.02 5.88 244.26 21.54 0.00 0.00 0.83 0.78 1.65 0.00 13.20 0.00 0.00 9.79 27.12 14.76 20.99 1.48 0.00 504.38 - 10.45 51.08 1986 0.00 0.63 13.01 112.46 25.72 5.67 250.41 22.77 0.00 0.00 0.82 0.72 1.63 0.00 13.67 0.00 0.00 9.94 28.45 15.55 22.36 1.27 0.00 525.08 - 10.45 51.08 1987 0.00 0.55 13.52 120.14 26.93 5.53 255.64 23.18 0.00 0.00 0.80 0.61 1.56 0.00 13.51 0.00 0.00 10.03 28.60 15.82 23.33 1.01 0.00 540.76 - 10.45 51.08 1988 0.00 0.37 13.07 63.36 24.78 5.36 254.45 17.88 0.00 0.00 0.77 0.56 1.48 0.00 13.73 0.00 0.00 8.47 25.26 13.66 19.54 0.94 0.00 463.68 - 10.45 51.08 1989 0.00 0.25 12.70 48.71 24.50 4.97 256.59 16.49 0.00 0.00 0.75 0.49 1.38 0.00 12.31 0.00 0.00 8.63 24.54 12.85 18.46 0.90 0.00 444.53 - 10.45 51.08 1990 0.00 0.16 12.00 50.89 23.77 4.72 263.10 16.59 0.00 0.00 0.73 0.43 1.31 0.00 11.34 0.00 0.00 8.80 23.08 11.89 18.63 14.04 0.00 461.49 - 10.45 51.08 1991 0.00 0.10 12.40 54.51 24.44 4.21 270.59 17.54 0.00 0.00 0.72 0.38 1.20 0.00 11.28 0.00 0.00 9.03 24.03 12.20 18.72 30.81 0.00 492.17 - 10.45 51.08 1992 0.00 0.08 11.33 59.17 24.38 3.77 275.77 18.03 0.00 0.00 0.56 0.32 1.12 0.00 11.06 0.00 0.00 9.21 22.23 11.40 19.34 24.55 0.00 492.29 - 10.45 51.08 1993 0.00 0.08 10.45 63.17 24.62 3.31 280.51 18.88 0.00 0.00 0.58 0.30 1.07 0.00 9.48 0.00 0.00 9.35 22.58 11.26 19.54 20.16 0.00 495.35 - 10.45 51.08 1994 0.00 0.05 10.29 70.08 25.86 3.12 287.87 20.32 0.00 0.00 0.59 0.29 1.01 0.00 9.58 0.00 0.00 9.61 24.22 12.06 20.74 13.26 0.00 508.94 - 10.45 51.08 1995 0.00 0.06 10.71 78.49 27.41 3.15 294.44 22.19 0.00 0.00 0.60 0.29 0.96 0.00 10.03 0.00 0.00 9.83 25.56 12.25 22.75 7.86 0.00 526.57 - 10.45 51.08 1996 0.00 0.06 10.69 86.48 28.92 3.11 300.02 23.38 0.00 0.00 0.59 0.29 0.93 0.00 10.49 0.00 0.00 10.00 27.01 12.58 24.28 7.48 0.00 546.31 - 10.45 51.08 1997 0.00 0.07 10.15 92.93 29.88 3.02 305.11 24.61 0.00 0.00 0.58 0.29 0.62 0.00 10.25 0.00 0.00 10.15 27.83 12.87 25.50 0.86 0.00 554.72 - 10.45 51.08 1998 0.00 0.07 10.34 101.98 29.92 2.82 311.16 25.52 0.00 0.00 0.59 0.29 0.60 0.00 9.76 0.00 0.00 10.32 28.37 12.92 26.80 0.86 0.00 572.31 - 10.45 51.08 1999 0.00 0.06 10.36 109.79 30.22 2.56 316.82 26.47 0.00 0.00 0.52 0.28 0.53 0.00 8.40 0.00 0.00 10.49 28.59 12.90 27.73 0.86 0.00 586.59 - 10.45 51.08 2000 0.00 0.06 10.20 118.78 29.83 2.30 323.50 27.68 0.00 0.00 0.54 0.27 0.48 0.00 7.48 0.00 0.00 10.64 29.04 12.56 28.78 0.00 0.00 602.14 - 10.45 51.08 2001 0.00 0.02 9.93 126.29 30.33 1.43 328.96 27.92 0.00 0.00 0.56 0.27 0.13 0.00 6.65 0.00 0.00 10.74 28.95 12.17 29.32 0.00 0.00 613.67 - 10.45 51.08 2002 0.00 0.01 9.33 133.47 30.22 1.09 334.52 28.75 0.00 0.00 0.56 0.24 0.13 0.00 6.19 0.00 0.00 10.84 28.47 11.76 29.79 0.00 0.00 625.39 - 10.45 51.08 2003 0.00 0.01 7.75 139.42 30.22 0.87 338.69 28.44 0.00 0.00 0.57 0.23 0.12 0.00 6.05 0.00 0.00 10.89 27.82 11.45 30.03 0.00 0.00 632.56 - 10.45 51.08 2004 0.00 0.01 7.22 145.82 29.38 0.60 343.58 27.45 0.00 0.00 0.59 0.22 0.11 0.00 5.31 0.00 0.00 10.92 27.37 10.07 29.77 0.00 0.00 638.43 - 10.45 51.08 2005 0.00 0.01 6.64 151.92 29.78 0.60 350.94 28.34 0.00 0.00 0.61 0.21 0.11 0.00 4.21 0.00 0.00 9.12 27.40 9.46 30.58 0.00 0.00 649.91 - 10.45 51.08 2006 0.00 0.01 5.91 157.15 29.52 0.59 357.66 28.61 0.00 0.00 0.62 0.11 0.10 0.00 3.78 0.00 0.00 7.22 26.83 9.14 30.04 0.00 0.00 657.30 - 10.45 51.08 2007 0.00 0.01 4.79 163.46 29.94 0.57 363.34 27.29 0.00 0.00 0.62 0.11 0.09 0.00 2.83 0.00 0.00 7.21 26.30 8.86 30.93 0.00 0.00 666.35 - 10.45 51.08 2008 0.00 0.01 4.81 173.97 30.46 0.56 369.37 28.32 0.00 0.00 0.68 0.11 0.09 0.00 2.84 0.00 0.00 7.29 26.38 8.08 30.93 0.00 0.00 683.90 - 10.45 51.08 2009 0.00 0.01 3.73 182.39 29.18 0.45 374.79 28.41 0.00 0.00 0.70 0.10 0.09 0.00 2.19 0.00 0.00 7.32 25.64 7.83 30.72 0.00 0.00 693.57 - 10.45 51.08 2010 0.00 0.01 3.45 189.27 28.59 0.44 380.06 28.88 0.00 0.00 0.73 0.10 0.09 0.00 2.16 0.00 0.00 7.35 25.66 7.12 30.75 0.00 0.00 704.65 - 10.45 51.08 2011 0.00 0.01 3.19 197.82 27.03 0.21 384.52 28.61 0.00 0.00 0.73 0.09 0.08 0.00 1.88 0.00 0.00 7.33 25.23 6.56 31.27 0.00 0.00 714.57 - 10.45 51.08 2012 0.00 0.01 3.18 207.71 27.01 0.21 391.48 29.29 0.00 0.00 0.77 0.09 0.08 0.00 1.48 0.00 0.00 7.41 25.07 6.22 31.92 0.00 0.00 731.93 diff --git a/rLPJGUESS/inst/extdata/outputsForTests/run_npatch/outDirectory/npool.out b/rLPJGUESS/inst/extdata/outputsForTests/run_npatch/outDirectory/npool.out deleted file mode 100644 index 77154d2..0000000 --- a/rLPJGUESS/inst/extdata/outputsForTests/run_npatch/outDirectory/npool.out +++ /dev/null @@ -1,63 +0,0 @@ - Lon Lat Year VegN LitterN SoilN Total - 10.45 51.08 1951 0.0687 0.0442 1.1149 1.2278 - 10.45 51.08 1952 0.0698 0.0431 1.1140 1.2269 - 10.45 51.08 1953 0.0706 0.0415 1.1139 1.2259 - 10.45 51.08 1954 0.0693 0.0432 1.1139 1.2264 - 10.45 51.08 1955 0.0699 0.0431 1.1144 1.2274 - 10.45 51.08 1956 0.0689 0.0446 1.1154 1.2289 - 10.45 51.08 1957 0.0699 0.0430 1.1151 1.2281 - 10.45 51.08 1958 0.0709 0.0424 1.1149 1.2281 - 10.45 51.08 1959 0.0600 0.0508 1.1153 1.2261 - 10.45 51.08 1960 0.0623 0.0499 1.1156 1.2278 - 10.45 51.08 1961 0.0628 0.0482 1.1161 1.2271 - 10.45 51.08 1962 0.0636 0.0474 1.1162 1.2272 - 10.45 51.08 1963 0.0648 0.0465 1.1162 1.2275 - 10.45 51.08 1964 0.0656 0.0451 1.1157 1.2264 - 10.45 51.08 1965 0.0665 0.0450 1.1162 1.2277 - 10.45 51.08 1966 0.0649 0.0467 1.1169 1.2284 - 10.45 51.08 1967 0.0665 0.0453 1.1164 1.2282 - 10.45 51.08 1968 0.0497 0.0603 1.1187 1.2287 - 10.45 51.08 1969 0.0520 0.0589 1.1190 1.2299 - 10.45 51.08 1970 0.0547 0.0575 1.1189 1.2310 - 10.45 51.08 1971 0.0559 0.0551 1.1198 1.2308 - 10.45 51.08 1972 0.0563 0.0553 1.1220 1.2336 - 10.45 51.08 1973 0.0569 0.0533 1.1217 1.2319 - 10.45 51.08 1974 0.0577 0.0527 1.1228 1.2332 - 10.45 51.08 1975 0.0590 0.0508 1.1221 1.2319 - 10.45 51.08 1976 0.0601 0.0491 1.1217 1.2309 - 10.45 51.08 1977 0.0485 0.0593 1.1262 1.2340 - 10.45 51.08 1978 0.0505 0.0575 1.1265 1.2345 - 10.45 51.08 1979 0.0531 0.0555 1.1255 1.2341 - 10.45 51.08 1980 0.0541 0.0541 1.1265 1.2347 - 10.45 51.08 1981 0.0489 0.0586 1.1285 1.2360 - 10.45 51.08 1982 0.0503 0.0550 1.1278 1.2332 - 10.45 51.08 1983 0.0521 0.0529 1.1281 1.2331 - 10.45 51.08 1984 0.0494 0.0565 1.1294 1.2353 - 10.45 51.08 1985 0.0504 0.0540 1.1294 1.2338 - 10.45 51.08 1986 0.0525 0.0526 1.1291 1.2342 - 10.45 51.08 1987 0.0541 0.0528 1.1300 1.2370 - 10.45 51.08 1988 0.0464 0.0503 1.1297 1.2263 - 10.45 51.08 1989 0.0445 0.0486 1.1321 1.2251 - 10.45 51.08 1990 0.0461 0.0469 1.1314 1.2244 - 10.45 51.08 1991 0.0492 0.0453 1.1297 1.2241 - 10.45 51.08 1992 0.0492 0.0442 1.1298 1.2232 - 10.45 51.08 1993 0.0495 0.0440 1.1301 1.2237 - 10.45 51.08 1994 0.0509 0.0427 1.1289 1.2224 - 10.45 51.08 1995 0.0527 0.0422 1.1284 1.2232 - 10.45 51.08 1996 0.0546 0.0425 1.1284 1.2256 - 10.45 51.08 1997 0.0555 0.0410 1.1276 1.2240 - 10.45 51.08 1998 0.0572 0.0399 1.1266 1.2237 - 10.45 51.08 1999 0.0587 0.0387 1.1260 1.2234 - 10.45 51.08 2000 0.0602 0.0375 1.1247 1.2224 - 10.45 51.08 2001 0.0614 0.0371 1.1240 1.2224 - 10.45 51.08 2002 0.0625 0.0373 1.1242 1.2240 - 10.45 51.08 2003 0.0633 0.0355 1.1224 1.2212 - 10.45 51.08 2004 0.0638 0.0350 1.1220 1.2208 - 10.45 51.08 2005 0.0650 0.0343 1.1208 1.2201 - 10.45 51.08 2006 0.0657 0.0338 1.1198 1.2193 - 10.45 51.08 2007 0.0666 0.0340 1.1196 1.2203 - 10.45 51.08 2008 0.0684 0.0327 1.1177 1.2188 - 10.45 51.08 2009 0.0694 0.0324 1.1170 1.2187 - 10.45 51.08 2010 0.0705 0.0327 1.1169 1.2200 - 10.45 51.08 2011 0.0715 0.0313 1.1156 1.2183 - 10.45 51.08 2012 0.0732 0.0304 1.1143 1.2179 diff --git a/rLPJGUESS/inst/extdata/outputsForTests/run_npatch/outDirectory/nsources.out b/rLPJGUESS/inst/extdata/outputsForTests/run_npatch/outDirectory/nsources.out deleted file mode 100644 index 48f1d05..0000000 --- a/rLPJGUESS/inst/extdata/outputsForTests/run_npatch/outDirectory/nsources.out +++ /dev/null @@ -1,63 +0,0 @@ - Lon Lat Year dep fix fert input min imm netmin Total - 10.45 51.08 1951 11.23 2.30 0.00 13.53 144.44 49.06 95.37 108.90 - 10.45 51.08 1952 11.23 2.14 0.00 13.37 153.68 37.76 115.93 129.30 - 10.45 51.08 1953 11.23 2.27 0.00 13.50 171.48 55.64 115.84 129.33 - 10.45 51.08 1954 11.23 2.50 0.00 13.73 144.37 42.45 101.92 115.65 - 10.45 51.08 1955 11.23 2.47 0.00 13.70 130.45 36.75 93.70 107.40 - 10.45 51.08 1956 11.23 2.65 0.00 13.88 125.09 38.18 86.91 100.79 - 10.45 51.08 1957 11.23 2.60 0.00 13.83 156.87 45.86 111.01 124.85 - 10.45 51.08 1958 11.23 2.42 0.00 13.65 146.79 42.26 104.53 118.18 - 10.45 51.08 1959 11.23 2.42 0.00 13.65 174.62 61.09 113.52 127.17 - 10.45 51.08 1960 14.10 2.71 0.00 16.81 138.51 46.58 91.93 108.74 - 10.45 51.08 1961 14.10 2.73 0.00 16.82 160.11 55.50 104.61 121.44 - 10.45 51.08 1962 14.10 2.77 0.00 16.87 140.08 43.22 96.87 113.74 - 10.45 51.08 1963 14.10 2.28 0.00 16.38 136.59 41.44 95.15 111.52 - 10.45 51.08 1964 14.10 2.00 0.00 16.10 153.21 44.55 108.67 124.77 - 10.45 51.08 1965 14.10 2.62 0.00 16.72 122.46 39.36 83.11 99.83 - 10.45 51.08 1966 14.10 2.54 0.00 16.64 133.31 43.31 90.01 106.65 - 10.45 51.08 1967 14.10 2.47 0.00 16.57 151.80 47.01 104.78 121.35 - 10.45 51.08 1968 14.10 2.16 0.00 16.26 143.72 63.96 79.76 96.01 - 10.45 51.08 1969 14.10 2.26 0.00 16.36 132.52 45.04 87.48 103.84 - 10.45 51.08 1970 16.97 2.39 0.00 19.36 137.26 40.70 96.56 115.92 - 10.45 51.08 1971 16.97 2.40 0.00 19.37 164.09 57.29 106.80 126.17 - 10.45 51.08 1972 16.97 2.72 0.00 19.69 119.33 45.40 73.93 93.62 - 10.45 51.08 1973 16.97 2.19 0.00 19.16 166.37 49.96 116.42 135.58 - 10.45 51.08 1974 16.97 2.69 0.00 19.66 136.46 50.74 85.72 105.38 - 10.45 51.08 1975 16.97 2.23 0.00 19.20 170.52 50.86 119.66 138.86 - 10.45 51.08 1976 16.97 2.24 0.00 19.21 167.03 53.73 113.31 132.51 - 10.45 51.08 1977 16.97 2.01 0.00 18.98 121.23 71.13 50.10 69.08 - 10.45 51.08 1978 16.97 2.66 0.00 19.63 141.44 50.25 91.19 110.83 - 10.45 51.08 1979 16.97 2.34 0.00 19.31 158.96 47.18 111.78 131.08 - 10.45 51.08 1980 17.99 2.45 0.00 20.44 150.99 53.03 97.96 118.40 - 10.45 51.08 1981 17.99 2.39 0.00 20.38 140.70 52.37 88.34 108.72 - 10.45 51.08 1982 17.99 2.00 0.00 20.00 195.83 68.64 127.19 147.19 - 10.45 51.08 1983 17.99 1.97 0.00 19.96 164.25 61.58 102.67 122.63 - 10.45 51.08 1984 17.99 2.55 0.00 20.54 124.13 40.41 83.72 104.26 - 10.45 51.08 1985 17.99 2.31 0.00 20.31 168.18 53.63 114.55 134.86 - 10.45 51.08 1986 17.99 2.18 0.00 20.18 151.01 44.38 106.62 126.80 - 10.45 51.08 1987 17.99 2.60 0.00 20.60 120.89 36.25 84.64 105.24 - 10.45 51.08 1988 17.99 2.27 0.00 20.26 184.89 57.74 127.16 147.42 - 10.45 51.08 1989 17.99 1.92 0.00 19.92 185.08 85.35 99.73 119.65 - 10.45 51.08 1990 19.66 2.50 0.00 22.15 168.21 61.86 106.35 128.50 - 10.45 51.08 1991 19.66 2.48 0.00 22.13 176.15 55.33 120.82 142.96 - 10.45 51.08 1992 19.66 1.82 0.00 21.47 172.92 62.43 110.50 131.97 - 10.45 51.08 1993 19.66 2.10 0.00 21.75 142.25 45.94 96.31 118.06 - 10.45 51.08 1994 19.66 2.09 0.00 21.75 169.59 49.99 119.60 141.35 - 10.45 51.08 1995 19.66 2.33 0.00 21.99 147.42 45.65 101.77 123.76 - 10.45 51.08 1996 19.66 2.72 0.00 22.38 118.62 31.29 87.34 109.72 - 10.45 51.08 1997 19.66 2.62 0.00 22.28 170.50 45.47 125.03 147.30 - 10.45 51.08 1998 19.66 2.77 0.00 22.42 163.45 45.32 118.13 140.56 - 10.45 51.08 1999 19.66 2.44 0.00 22.09 170.65 53.20 117.45 139.54 - 10.45 51.08 2000 21.34 2.45 0.00 23.79 177.63 49.97 127.66 151.46 - 10.45 51.08 2001 21.34 2.49 0.00 23.83 161.53 46.20 115.33 139.16 - 10.45 51.08 2002 21.34 2.73 0.00 24.07 142.42 42.10 100.32 124.40 - 10.45 51.08 2003 21.34 2.07 0.00 23.41 192.34 52.27 140.07 163.49 - 10.45 51.08 2004 21.34 2.58 0.00 23.93 161.62 48.88 112.73 136.66 - 10.45 51.08 2005 21.34 2.51 0.00 23.85 169.73 47.60 122.13 145.99 - 10.45 51.08 2006 21.34 2.30 0.00 23.64 169.30 48.83 120.47 144.11 - 10.45 51.08 2007 21.34 2.31 0.00 23.65 149.75 46.85 102.90 126.55 - 10.45 51.08 2008 21.34 2.58 0.00 23.92 177.66 47.74 129.92 153.84 - 10.45 51.08 2009 21.34 2.24 0.00 23.58 155.92 43.48 112.44 136.02 - 10.45 51.08 2010 20.03 2.64 0.00 22.66 134.40 34.90 99.50 122.16 - 10.45 51.08 2011 20.03 2.45 0.00 22.48 173.25 48.09 125.16 147.64 - 10.45 51.08 2012 20.03 2.50 0.00 22.53 165.83 48.32 117.51 140.04 diff --git a/rLPJGUESS/inst/extdata/outputsForTests/run_npatch/outDirectory/nuptake.out b/rLPJGUESS/inst/extdata/outputsForTests/run_npatch/outDirectory/nuptake.out deleted file mode 100644 index 1f1b4b1..0000000 --- a/rLPJGUESS/inst/extdata/outputsForTests/run_npatch/outDirectory/nuptake.out +++ /dev/null @@ -1,63 +0,0 @@ - Lon Lat Year Abi_alb BES Bet_pen Bet_pub Car_bet Cor_ave Fag_syl Fra_exc Jun_oxy MRS Pic_abi Pic_sit Pin_syl Pin_hal Pop_tre Que_coc Que_ile Que_pub Que_rob Til_cor Ulm_gla C3_gr C4_gr Total - 10.45 51.08 1951 0.00 0.16 5.45 22.63 5.68 1.30 43.15 6.96 0.00 0.00 0.14 0.25 0.32 0.00 3.63 0.00 0.00 1.23 6.83 4.42 5.11 0.00 0.00 107.26 - 10.45 51.08 1952 0.00 0.09 5.50 24.48 5.92 1.23 43.33 7.26 0.00 0.00 0.14 0.19 0.28 0.00 3.63 0.00 0.00 1.25 6.73 4.47 5.37 0.00 0.00 109.87 - 10.45 51.08 1953 0.00 0.05 4.84 24.68 5.88 1.07 43.46 7.21 0.00 0.00 0.12 0.11 0.24 0.00 3.28 0.00 0.00 1.21 6.53 4.33 5.35 0.00 0.00 108.36 - 10.45 51.08 1954 0.00 0.04 4.60 24.24 5.91 1.00 44.75 7.14 0.00 0.00 0.11 0.07 0.22 0.00 3.26 0.00 0.00 1.29 6.58 4.19 5.46 0.00 0.00 108.85 - 10.45 51.08 1955 0.00 0.02 4.14 23.73 5.60 0.77 42.92 6.86 0.00 0.00 0.11 0.06 0.19 0.00 2.91 0.00 0.00 1.27 6.32 3.82 5.28 0.00 0.00 104.00 - 10.45 51.08 1956 0.00 0.01 3.81 24.97 5.65 0.66 40.59 6.81 0.00 0.00 0.09 0.03 0.17 0.00 2.66 0.00 0.00 1.26 6.35 3.78 5.32 0.00 0.00 102.14 - 10.45 51.08 1957 0.00 0.00 3.61 26.24 5.64 0.57 41.93 6.86 0.00 0.00 0.09 0.01 0.15 0.00 2.52 0.00 0.00 1.27 6.33 3.83 5.21 0.00 0.00 104.27 - 10.45 51.08 1958 0.00 0.00 3.47 27.81 5.76 0.49 40.07 6.77 0.00 0.00 0.08 0.00 0.14 0.00 2.18 0.00 0.00 1.11 6.21 3.69 5.26 0.00 0.00 103.03 - 10.45 51.08 1959 0.00 0.00 3.01 28.15 5.61 0.41 35.59 6.64 0.00 0.00 0.06 0.00 0.10 0.00 1.82 0.00 0.00 1.09 6.15 3.57 5.02 0.00 0.00 97.23 - 10.45 51.08 1960 0.00 0.00 2.35 28.30 5.37 0.32 40.55 6.31 0.00 0.00 0.06 0.01 0.06 0.00 1.43 0.00 0.00 1.22 6.17 3.32 4.87 9.58 0.00 109.91 - 10.45 51.08 1961 0.00 0.00 2.15 29.53 5.25 0.25 39.26 6.19 0.00 0.00 0.07 0.00 0.05 0.00 1.33 0.00 0.00 1.01 5.84 3.08 4.67 1.56 0.00 100.23 - 10.45 51.08 1962 0.00 0.00 2.19 29.85 5.19 0.21 39.77 6.32 0.00 0.00 0.07 0.00 0.03 0.00 1.13 0.00 0.00 1.05 6.04 3.02 4.87 0.19 0.00 99.91 - 10.45 51.08 1963 0.00 0.00 1.86 30.92 4.70 0.14 41.05 5.96 0.00 0.00 0.07 0.00 0.00 0.00 0.93 0.00 0.00 1.05 5.76 2.73 4.38 0.19 0.00 99.75 - 10.45 51.08 1964 0.00 0.00 1.62 31.51 4.36 0.09 41.65 5.74 0.00 0.00 0.07 0.00 0.00 0.00 0.67 0.00 0.00 1.03 5.54 2.54 4.36 0.06 0.00 99.25 - 10.45 51.08 1965 0.00 0.00 1.42 30.49 4.28 0.08 41.73 5.64 0.00 0.00 0.08 0.00 0.00 0.00 0.56 0.00 0.00 1.06 5.45 2.31 4.28 0.04 0.00 97.40 - 10.45 51.08 1966 0.00 0.00 1.34 30.57 4.21 0.04 42.87 5.72 0.00 0.00 0.08 0.00 0.00 0.00 0.55 0.00 0.00 1.05 5.33 2.26 4.35 0.02 0.00 98.39 - 10.45 51.08 1967 0.00 0.00 1.23 32.70 4.43 0.03 29.36 5.80 0.00 0.00 0.02 0.00 0.00 0.00 0.56 0.00 0.00 1.13 5.19 2.20 4.58 0.00 0.00 87.23 - 10.45 51.08 1968 0.00 0.00 1.16 33.26 4.18 0.02 28.87 5.67 0.00 0.00 0.02 0.00 0.00 0.00 0.42 0.00 0.00 1.09 5.05 2.09 4.16 0.00 0.00 86.00 - 10.45 51.08 1969 0.00 0.11 1.24 33.41 4.18 0.20 29.44 5.72 0.00 0.00 0.07 0.09 0.10 0.00 0.56 0.00 0.00 1.13 5.16 2.13 4.23 12.87 0.00 100.65 - 10.45 51.08 1970 0.00 0.13 1.23 34.21 4.36 0.36 29.70 5.67 0.00 0.00 0.10 0.12 0.13 0.00 0.80 0.00 0.00 1.09 5.20 2.23 4.30 21.51 0.00 111.14 - 10.45 51.08 1971 0.00 0.18 1.28 35.32 4.61 0.65 29.64 5.75 0.00 0.00 0.14 0.18 0.20 0.00 1.22 0.00 0.00 1.06 5.37 2.38 4.42 16.12 0.00 108.49 - 10.45 51.08 1972 0.00 0.22 1.42 35.46 4.83 0.94 30.54 5.62 0.00 0.00 0.19 0.24 0.29 0.00 1.79 0.00 0.00 1.08 5.41 2.56 4.46 7.10 0.00 102.14 - 10.45 51.08 1973 0.00 0.25 1.87 38.07 5.27 1.34 30.67 5.88 0.00 0.00 0.24 0.31 0.36 0.00 2.52 0.00 0.00 1.05 5.63 2.74 4.79 1.75 0.00 102.74 - 10.45 51.08 1974 0.00 0.24 2.03 36.23 5.31 1.53 30.39 5.61 0.00 0.00 0.26 0.32 0.39 0.00 3.01 0.00 0.00 1.02 5.57 2.82 4.76 0.00 0.00 99.49 - 10.45 51.08 1975 0.00 0.21 2.34 40.76 5.64 1.76 31.62 6.15 0.00 0.00 0.27 0.32 0.41 0.00 3.58 0.00 0.00 1.07 6.13 3.16 5.31 0.00 0.00 108.74 - 10.45 51.08 1976 0.00 0.18 2.39 22.67 5.19 1.77 28.63 5.23 0.00 0.00 0.26 0.28 0.40 0.00 3.62 0.00 0.00 1.01 5.43 3.08 4.50 0.00 0.00 84.65 - 10.45 51.08 1977 0.00 0.17 2.37 21.20 4.96 1.69 29.35 4.85 0.00 0.00 0.24 0.25 0.36 0.00 3.48 0.00 0.00 0.94 5.13 2.95 4.13 0.00 0.00 82.06 - 10.45 51.08 1978 0.00 0.24 2.70 22.22 5.33 1.81 29.16 5.20 0.00 0.00 0.26 0.27 0.45 0.00 3.75 0.00 0.00 0.99 5.23 3.15 4.47 12.87 0.00 98.08 - 10.45 51.08 1979 0.00 0.26 3.07 24.43 5.83 1.91 29.48 5.30 0.00 0.00 0.28 0.29 0.49 0.00 3.96 0.00 0.00 0.98 5.60 3.44 4.74 21.43 0.00 111.49 - 10.45 51.08 1980 0.00 0.30 3.32 24.48 6.09 1.97 29.03 5.28 0.00 0.00 0.30 0.32 0.56 0.00 4.07 0.00 0.00 0.97 5.74 3.52 4.91 16.18 0.00 107.03 - 10.45 51.08 1981 0.00 0.32 3.88 25.29 6.53 2.11 26.93 5.65 0.00 0.00 0.34 0.37 0.66 0.00 4.46 0.00 0.00 0.94 5.99 4.00 5.35 8.36 0.00 101.18 - 10.45 51.08 1982 0.00 0.28 4.41 27.62 7.47 2.39 29.52 6.27 0.00 0.00 0.33 0.34 0.67 0.00 5.25 0.00 0.00 1.04 6.75 4.81 6.10 0.49 0.00 103.74 - 10.45 51.08 1983 0.00 0.29 4.60 24.20 7.45 2.36 28.73 6.08 0.00 0.00 0.37 0.35 0.74 0.00 5.11 0.00 0.00 0.99 6.60 4.97 6.10 4.27 0.00 103.21 - 10.45 51.08 1984 0.00 0.24 4.92 26.88 7.98 2.32 30.00 6.46 0.00 0.00 0.31 0.27 0.68 0.00 5.47 0.00 0.00 1.00 7.06 5.12 6.67 0.99 0.00 106.37 - 10.45 51.08 1985 0.00 0.22 4.85 27.28 7.86 2.14 28.98 6.25 0.00 0.00 0.32 0.25 0.64 0.00 5.24 0.00 0.00 1.01 6.91 5.02 6.58 0.29 0.00 103.84 - 10.45 51.08 1986 0.00 0.18 5.29 30.43 8.73 2.12 31.61 6.91 0.00 0.00 0.31 0.21 0.62 0.00 5.51 0.00 0.00 1.05 7.59 5.45 7.30 0.29 0.00 113.58 - 10.45 51.08 1987 0.00 0.14 5.19 31.47 8.77 1.91 31.34 6.83 0.00 0.00 0.28 0.15 0.54 0.00 5.17 0.00 0.00 1.02 7.37 5.21 7.32 0.08 0.00 112.79 - 10.45 51.08 1988 0.00 0.09 4.95 33.17 8.97 1.76 31.46 6.95 0.00 0.00 0.26 0.14 0.49 0.00 5.11 0.00 0.00 0.88 6.63 5.21 7.49 0.05 0.00 113.61 - 10.45 51.08 1989 0.00 0.06 4.51 16.55 8.17 1.54 29.81 5.55 0.00 0.00 0.26 0.11 0.45 0.00 4.27 0.00 0.00 0.91 6.55 4.59 6.29 0.03 0.00 89.64 - 10.45 51.08 1990 0.00 0.04 4.06 16.88 7.59 1.35 31.59 5.41 0.00 0.00 0.25 0.08 0.41 0.00 3.67 0.00 0.00 0.97 6.24 4.08 6.14 13.17 0.00 101.92 - 10.45 51.08 1991 0.00 0.03 4.33 19.22 8.09 1.19 33.32 6.09 0.00 0.00 0.23 0.06 0.35 0.00 3.81 0.00 0.00 1.07 6.84 4.34 6.55 25.56 0.00 121.06 - 10.45 51.08 1992 0.00 0.02 3.57 19.55 7.54 0.97 32.53 5.86 0.00 0.00 0.20 0.03 0.29 0.00 3.40 0.00 0.00 1.07 6.17 3.78 6.30 12.39 0.00 103.68 - 10.45 51.08 1993 0.00 0.02 3.32 20.81 7.71 0.83 32.13 6.26 0.00 0.00 0.22 0.04 0.27 0.00 3.04 0.00 0.00 1.07 6.42 3.81 6.55 9.83 0.00 102.33 - 10.45 51.08 1994 0.00 0.02 3.50 24.70 8.71 0.84 35.22 7.22 0.00 0.00 0.22 0.03 0.24 0.00 3.31 0.00 0.00 1.21 7.46 4.35 7.41 3.79 0.00 108.23 - 10.45 51.08 1995 0.00 0.02 3.63 27.38 9.17 0.83 35.30 7.80 0.00 0.00 0.22 0.04 0.23 0.00 3.44 0.00 0.00 1.23 7.86 4.40 8.01 0.17 0.00 109.74 - 10.45 51.08 1996 0.00 0.02 3.49 28.84 9.31 0.76 35.35 7.92 0.00 0.00 0.21 0.04 0.19 0.00 3.43 0.00 0.00 1.24 8.08 4.36 8.26 0.00 0.00 111.50 - 10.45 51.08 1997 0.00 0.02 3.14 29.91 9.24 0.69 35.59 7.99 0.00 0.00 0.19 0.03 0.17 0.00 3.19 0.00 0.00 1.26 7.97 4.27 8.34 0.00 0.00 112.00 - 10.45 51.08 1998 0.00 0.02 3.12 32.65 9.17 0.61 36.96 8.21 0.00 0.00 0.21 0.03 0.16 0.00 2.94 0.00 0.00 1.30 8.13 4.18 8.69 0.00 0.00 116.39 - 10.45 51.08 1999 0.00 0.02 2.92 33.60 8.82 0.50 37.54 8.11 0.00 0.00 0.20 0.03 0.10 0.00 2.37 0.00 0.00 1.33 7.81 3.93 8.58 0.00 0.00 115.84 - 10.45 51.08 2000 0.00 0.00 2.86 36.28 8.82 0.42 38.74 8.54 0.00 0.00 0.21 0.02 0.06 0.00 2.09 0.00 0.00 1.34 7.95 3.85 8.94 0.00 0.00 120.11 - 10.45 51.08 2001 0.00 0.00 2.56 36.34 8.47 0.35 38.15 8.12 0.00 0.00 0.22 0.02 0.05 0.00 1.77 0.00 0.00 1.30 7.47 3.49 8.60 0.00 0.00 116.90 - 10.45 51.08 2002 0.00 0.00 2.29 37.31 8.16 0.26 38.68 8.15 0.00 0.00 0.21 0.02 0.04 0.00 1.58 0.00 0.00 1.30 7.21 3.24 8.54 0.00 0.00 117.00 - 10.45 51.08 2003 0.00 0.00 1.83 37.84 7.86 0.20 37.65 7.76 0.00 0.00 0.21 0.02 0.04 0.00 1.45 0.00 0.00 1.26 6.79 3.02 8.26 0.00 0.00 114.19 - 10.45 51.08 2004 0.00 0.00 1.59 37.14 7.29 0.19 38.25 7.13 0.00 0.00 0.22 0.02 0.04 0.00 1.23 0.00 0.00 1.21 6.38 2.54 7.83 0.00 0.00 111.05 - 10.45 51.08 2005 0.00 0.00 1.44 39.35 7.43 0.18 40.93 7.39 0.00 0.00 0.23 0.01 0.03 0.00 0.98 0.00 0.00 1.13 6.38 2.38 8.09 0.00 0.00 115.97 - 10.45 51.08 2006 0.00 0.00 1.20 39.97 7.11 0.17 40.73 7.05 0.00 0.00 0.23 0.01 0.03 0.00 0.83 0.00 0.00 0.93 6.04 2.26 7.67 0.00 0.00 114.24 - 10.45 51.08 2007 0.00 0.00 0.95 40.57 7.08 0.15 40.18 7.11 0.00 0.00 0.21 0.01 0.03 0.00 0.57 0.00 0.00 0.86 5.79 2.04 7.78 0.00 0.00 113.33 - 10.45 51.08 2008 0.00 0.00 0.90 43.46 7.08 0.14 40.83 7.42 0.00 0.00 0.27 0.01 0.03 0.00 0.55 0.00 0.00 0.92 5.91 1.86 7.87 0.00 0.00 117.25 - 10.45 51.08 2009 0.00 0.00 0.66 42.58 6.60 0.11 40.43 6.86 0.00 0.00 0.26 0.01 0.02 0.00 0.38 0.00 0.00 0.87 5.25 1.69 7.21 0.00 0.00 112.94 - 10.45 51.08 2010 0.00 0.00 0.57 42.80 6.18 0.10 40.44 6.73 0.00 0.00 0.26 0.01 0.02 0.00 0.34 0.00 0.00 0.85 5.06 1.47 6.98 0.00 0.00 111.83 - 10.45 51.08 2011 0.00 0.00 0.50 44.42 5.64 0.04 39.73 6.51 0.00 0.00 0.24 0.00 0.02 0.00 0.28 0.00 0.00 0.78 4.83 1.32 6.90 0.00 0.00 111.23 - 10.45 51.08 2012 0.00 0.00 0.49 46.21 5.61 0.04 42.12 6.58 0.00 0.00 0.29 0.00 0.02 0.00 0.22 0.00 0.00 0.84 4.80 1.23 6.98 0.00 0.00 115.42 diff --git a/rLPJGUESS/inst/extdata/outputsForTests/run_npatch/outDirectory/runoff.out b/rLPJGUESS/inst/extdata/outputsForTests/run_npatch/outDirectory/runoff.out deleted file mode 100644 index 6e9bc1a..0000000 --- a/rLPJGUESS/inst/extdata/outputsForTests/run_npatch/outDirectory/runoff.out +++ /dev/null @@ -1,63 +0,0 @@ - Lon Lat Year Surf Drain Base Total - 10.45 51.08 1951 68.3 51.9 4.4 124.7 - 10.45 51.08 1952 141.0 106.7 15.5 263.3 - 10.45 51.08 1953 31.5 49.6 2.2 83.3 - 10.45 51.08 1954 16.2 77.3 0.7 94.2 - 10.45 51.08 1955 52.7 83.2 8.5 144.4 - 10.45 51.08 1956 118.0 109.2 12.6 239.8 - 10.45 51.08 1957 10.3 106.2 0.5 117.0 - 10.45 51.08 1958 97.1 111.7 8.6 217.4 - 10.45 51.08 1959 0.0 26.3 0.0 26.3 - 10.45 51.08 1960 72.7 90.6 2.6 165.9 - 10.45 51.08 1961 83.7 122.3 8.8 214.8 - 10.45 51.08 1962 3.0 52.7 2.5 58.3 - 10.45 51.08 1963 6.3 61.8 3.9 71.9 - 10.45 51.08 1964 27.2 45.1 0.8 73.1 - 10.45 51.08 1965 27.0 83.9 3.5 114.3 - 10.45 51.08 1966 91.6 103.9 6.9 202.4 - 10.45 51.08 1967 0.4 101.5 0.3 102.2 - 10.45 51.08 1968 24.0 89.4 1.7 115.2 - 10.45 51.08 1969 63.0 100.9 9.1 173.0 - 10.45 51.08 1970 39.8 118.1 3.7 161.7 - 10.45 51.08 1971 6.6 39.5 0.1 46.2 - 10.45 51.08 1972 51.9 47.1 5.9 104.9 - 10.45 51.08 1973 8.2 53.6 1.6 63.5 - 10.45 51.08 1974 25.3 82.6 1.6 109.5 - 10.45 51.08 1975 0.0 53.2 0.0 53.2 - 10.45 51.08 1976 6.2 27.6 1.2 35.0 - 10.45 51.08 1977 83.0 85.7 5.9 174.6 - 10.45 51.08 1978 4.4 87.1 0.7 92.2 - 10.45 51.08 1979 54.8 81.2 3.7 139.7 - 10.45 51.08 1980 1.8 60.1 0.2 62.1 - 10.45 51.08 1981 64.0 88.7 5.7 158.4 - 10.45 51.08 1982 11.8 40.1 1.0 53.0 - 10.45 51.08 1983 50.4 39.2 4.0 93.6 - 10.45 51.08 1984 45.3 78.6 11.0 134.9 - 10.45 51.08 1985 2.8 40.0 0.6 43.4 - 10.45 51.08 1986 32.1 56.8 4.6 93.5 - 10.45 51.08 1987 103.8 86.7 9.1 199.6 - 10.45 51.08 1988 25.6 106.7 4.9 137.2 - 10.45 51.08 1989 13.8 52.8 1.1 67.7 - 10.45 51.08 1990 11.2 81.3 1.4 93.9 - 10.45 51.08 1991 8.5 29.1 0.7 38.3 - 10.45 51.08 1992 60.3 63.2 3.7 127.2 - 10.45 51.08 1993 44.5 84.6 3.9 133.0 - 10.45 51.08 1994 54.9 102.6 2.6 160.1 - 10.45 51.08 1995 35.1 91.7 4.8 131.6 - 10.45 51.08 1996 38.4 92.8 2.0 133.3 - 10.45 51.08 1997 25.9 101.0 5.0 131.9 - 10.45 51.08 1998 38.1 82.2 3.1 123.4 - 10.45 51.08 1999 11.7 66.8 2.1 80.6 - 10.45 51.08 2000 10.3 73.5 2.1 85.9 - 10.45 51.08 2001 22.2 74.1 4.8 101.1 - 10.45 51.08 2002 126.6 136.9 6.1 269.6 - 10.45 51.08 2003 6.6 53.6 1.3 61.5 - 10.45 51.08 2004 58.9 40.7 4.3 103.9 - 10.45 51.08 2005 3.7 47.3 1.2 52.2 - 10.45 51.08 2006 12.3 45.7 1.7 59.7 - 10.45 51.08 2007 143.4 71.2 4.1 218.6 - 10.45 51.08 2008 11.4 65.9 1.1 78.3 - 10.45 51.08 2009 40.8 72.4 2.2 115.4 - 10.45 51.08 2010 123.7 83.2 9.5 216.3 - 10.45 51.08 2011 63.6 61.1 1.0 125.7 - 10.45 51.08 2012 14.4 51.5 1.6 67.4 diff --git a/rLPJGUESS/inst/extdata/outputsForTests/run_npatch/outDirectory/speciesheight.out b/rLPJGUESS/inst/extdata/outputsForTests/run_npatch/outDirectory/speciesheight.out deleted file mode 100644 index cf74915..0000000 --- a/rLPJGUESS/inst/extdata/outputsForTests/run_npatch/outDirectory/speciesheight.out +++ /dev/null @@ -1,63 +0,0 @@ - Lon Lat Year Abi_alb BES Bet_pen Bet_pub Car_bet Cor_ave Fag_syl Fra_exc Jun_oxy MRS Pic_abi Pic_sit Pin_syl Pin_hal Pop_tre Que_coc Que_ile Que_pub Que_rob Til_cor Ulm_gla C3_gr C4_gr - 10.45 51.08 1951 0.00 0.85 7.52 10.61 8.23 6.06 12.92 8.18 0.00 0.00 5.37 4.11 4.70 0.00 7.11 0.00 0.00 12.88 9.17 7.26 7.86 0.00 0.00 - 10.45 51.08 1952 0.00 0.85 7.58 10.96 8.33 6.07 12.96 8.23 0.00 0.00 5.37 4.11 4.70 0.00 7.25 0.00 0.00 12.92 9.27 7.32 7.97 0.00 0.00 - 10.45 51.08 1953 0.00 0.85 7.73 10.99 8.43 6.08 13.05 8.25 0.00 0.00 5.37 4.11 4.70 0.00 7.41 0.00 0.00 12.99 9.38 7.37 8.14 0.00 0.00 - 10.45 51.08 1954 0.00 0.85 7.80 11.19 8.51 6.08 13.13 8.45 0.00 0.00 5.38 4.12 4.70 0.00 7.47 0.00 0.00 13.05 9.47 7.45 8.24 0.00 0.00 - 10.45 51.08 1955 0.00 0.85 7.89 11.51 8.61 6.08 13.12 8.54 0.00 0.00 5.38 4.11 4.70 0.00 7.57 0.00 0.00 13.10 9.64 7.52 8.41 0.00 0.00 - 10.45 51.08 1956 0.00 0.85 7.96 11.76 8.65 6.09 13.46 8.64 0.00 0.00 5.38 4.12 4.70 0.00 7.68 0.00 0.00 13.15 9.77 7.61 8.60 0.00 0.00 - 10.45 51.08 1957 0.00 0.00 8.11 12.14 8.75 6.10 13.56 8.83 0.00 0.00 5.38 4.12 4.70 0.00 7.77 0.00 0.00 13.20 9.89 7.69 8.70 0.00 0.00 - 10.45 51.08 1958 0.00 0.00 8.18 12.48 8.86 6.10 12.85 8.99 0.00 0.00 5.38 7.55 4.71 0.00 7.84 0.00 0.00 13.25 9.98 7.75 8.83 0.00 0.00 - 10.45 51.08 1959 0.00 0.00 8.18 12.62 8.87 6.10 13.05 9.00 0.00 0.00 5.39 7.55 4.71 0.00 7.83 0.00 0.00 13.33 10.00 7.75 8.85 0.00 0.00 - 10.45 51.08 1960 0.00 0.00 8.26 12.99 8.96 6.10 13.29 9.18 0.00 0.00 10.28 7.55 4.71 0.00 7.90 0.00 0.00 13.38 10.03 7.87 9.07 0.00 0.00 - 10.45 51.08 1961 0.00 0.00 8.33 13.23 9.05 6.10 13.23 9.30 0.00 0.00 10.31 7.56 4.71 0.00 7.97 0.00 0.00 13.45 10.13 8.00 9.17 0.00 0.00 - 10.45 51.08 1962 0.00 0.00 8.34 13.40 9.08 6.10 13.29 9.33 0.00 0.00 10.34 7.56 4.71 0.00 7.97 0.00 0.00 13.51 10.15 8.00 9.18 0.00 0.00 - 10.45 51.08 1963 0.00 0.00 8.39 13.86 9.17 6.10 15.41 9.40 0.00 0.00 8.19 7.57 6.14 0.00 8.03 0.00 0.00 13.56 10.25 8.04 9.27 0.00 0.00 - 10.45 51.08 1964 0.00 0.00 8.39 14.15 9.30 6.10 15.51 9.54 0.00 0.00 8.22 7.56 6.14 0.00 8.04 0.00 0.00 13.62 10.29 8.06 9.31 0.00 0.00 - 10.45 51.08 1965 0.00 0.00 8.46 14.13 9.40 6.10 15.63 9.63 0.00 0.00 8.26 7.56 6.12 0.00 8.09 0.00 0.00 13.67 10.40 8.11 9.40 0.00 0.00 - 10.45 51.08 1966 0.00 0.00 8.53 14.59 9.49 6.10 15.77 9.75 0.00 0.00 7.19 7.57 6.15 0.00 8.15 0.00 0.00 13.75 10.50 8.16 9.50 0.00 0.00 - 10.45 51.08 1967 0.00 0.00 8.57 14.89 9.47 6.10 13.85 9.70 0.00 0.00 4.07 0.00 0.00 0.00 8.18 0.00 0.00 13.80 10.06 8.19 9.60 0.00 0.00 - 10.45 51.08 1968 0.00 0.00 8.60 15.16 9.54 6.10 13.97 9.77 0.00 0.00 4.11 0.00 0.00 0.00 8.21 0.00 0.00 13.87 10.12 8.22 9.66 0.00 0.00 - 10.45 51.08 1969 0.00 0.60 8.63 15.39 9.59 6.10 14.08 9.84 0.00 0.00 4.14 0.00 0.00 0.00 8.23 0.00 0.00 13.91 10.18 8.23 9.72 0.00 0.00 - 10.45 51.08 1970 0.00 0.68 8.65 10.48 9.63 0.00 14.17 9.89 0.00 0.00 4.16 0.00 0.00 0.00 8.24 0.00 0.00 13.95 10.23 8.25 9.77 0.00 0.00 - 10.45 51.08 1971 0.00 0.75 5.67 11.05 7.24 4.29 12.17 8.16 0.00 0.00 4.22 0.00 0.00 0.00 4.66 0.00 0.00 14.00 7.87 6.44 7.62 0.00 0.00 - 10.45 51.08 1972 0.00 0.81 6.13 10.48 7.37 4.81 10.04 8.20 0.00 0.00 3.89 0.00 4.10 0.00 5.14 0.00 0.00 14.05 7.92 6.62 7.43 0.00 0.00 - 10.45 51.08 1973 0.00 0.84 6.37 10.78 7.57 5.18 10.25 8.35 0.00 0.00 4.13 3.86 4.37 0.00 5.60 0.00 0.00 14.08 8.11 6.83 7.63 0.00 0.00 - 10.45 51.08 1974 0.00 0.86 6.60 11.16 7.71 5.50 10.47 8.55 0.00 0.00 4.30 4.03 4.58 0.00 5.97 0.00 0.00 14.14 8.33 7.06 7.87 0.00 0.00 - 10.45 51.08 1975 0.00 0.86 6.84 11.28 7.93 5.70 10.61 8.65 0.00 0.00 4.40 4.10 4.71 0.00 6.24 0.00 0.00 14.17 8.50 7.20 7.97 0.00 0.00 - 10.45 51.08 1976 0.00 0.86 6.88 9.64 7.75 5.78 10.60 8.44 0.00 0.00 4.40 4.10 4.73 0.00 6.38 0.00 0.00 14.19 8.29 7.13 7.62 0.00 0.00 - 10.45 51.08 1977 0.00 0.86 7.09 9.93 7.90 5.91 10.74 8.59 0.00 0.00 4.43 4.10 4.78 0.00 6.60 0.00 0.00 14.24 8.44 7.27 7.79 0.00 0.00 - 10.45 51.08 1978 0.00 0.71 7.26 10.27 8.05 6.03 10.86 8.59 0.00 0.00 4.46 4.10 4.83 0.00 6.73 0.00 0.00 14.28 8.59 7.34 7.95 0.00 0.00 - 10.45 51.08 1979 0.00 0.75 7.36 8.68 8.12 6.07 10.94 8.55 0.00 0.00 4.44 4.10 4.86 0.00 6.91 0.00 0.00 14.32 8.68 7.45 8.09 0.00 0.00 - 10.45 51.08 1980 0.00 0.79 5.58 8.95 6.36 5.14 9.30 6.97 0.00 0.00 4.46 4.10 4.88 0.00 5.62 0.00 0.00 14.35 7.22 5.83 6.54 0.00 0.00 - 10.45 51.08 1981 0.00 0.81 5.99 9.22 6.76 5.42 9.44 7.27 0.00 0.00 4.25 4.10 4.46 0.00 6.03 0.00 0.00 14.41 7.54 6.22 6.92 0.00 0.00 - 10.45 51.08 1982 0.00 0.84 6.27 9.49 6.90 5.58 8.58 7.47 0.00 0.00 4.37 4.02 4.62 0.00 6.25 0.00 0.00 14.46 7.64 6.45 7.10 0.00 0.00 - 10.45 51.08 1983 0.00 0.85 6.50 9.60 7.12 5.73 8.74 7.62 0.00 0.00 4.44 4.07 4.71 0.00 6.51 0.00 0.00 14.50 7.84 6.68 7.41 0.00 0.00 - 10.45 51.08 1984 0.00 0.86 6.71 9.88 7.30 5.81 8.86 7.78 0.00 0.00 4.49 4.10 4.78 0.00 6.68 0.00 0.00 14.54 7.97 6.82 7.56 0.00 0.00 - 10.45 51.08 1985 0.00 0.86 6.91 10.17 7.49 5.88 8.99 7.95 0.00 0.00 4.49 4.10 4.81 0.00 6.85 0.00 0.00 14.60 8.13 6.97 7.74 0.00 0.00 - 10.45 51.08 1986 0.00 0.86 7.09 10.50 7.66 5.94 9.10 8.08 0.00 0.00 4.51 4.10 4.83 0.00 6.99 0.00 0.00 14.64 8.26 7.12 7.91 0.00 0.00 - 10.45 51.08 1987 0.00 0.86 7.25 10.82 7.81 5.97 9.20 8.21 0.00 0.00 4.53 4.11 4.83 0.00 7.12 0.00 0.00 14.69 8.39 7.19 8.05 0.00 0.00 - 10.45 51.08 1988 0.00 0.86 7.27 9.38 7.65 5.96 8.95 7.78 0.00 0.00 4.53 4.11 4.83 0.00 7.16 0.00 0.00 14.75 8.15 7.01 7.73 0.00 0.00 - 10.45 51.08 1989 0.00 0.86 7.31 9.69 7.71 5.96 9.02 7.84 0.00 0.00 4.55 4.11 4.83 0.00 7.19 0.00 0.00 14.81 8.16 7.01 7.80 0.00 0.00 - 10.45 51.08 1990 0.00 0.79 7.43 9.99 7.88 5.97 9.25 8.06 0.00 0.00 4.58 4.11 4.84 0.00 7.29 0.00 0.00 14.88 8.35 7.11 7.93 0.00 0.00 - 10.45 51.08 1991 0.00 0.77 7.48 8.60 7.94 5.97 10.60 8.12 0.00 0.00 4.71 4.11 4.84 0.00 7.32 0.00 0.00 14.93 8.27 7.12 7.98 0.00 0.00 - 10.45 51.08 1992 0.00 0.80 7.20 8.99 7.57 5.76 8.92 7.98 0.00 0.00 4.75 4.11 4.84 0.00 6.96 0.00 0.00 9.69 7.56 7.00 7.74 0.00 0.00 - 10.45 51.08 1993 0.00 0.79 6.95 8.20 7.48 5.65 7.53 7.38 0.00 0.00 4.60 4.11 4.80 0.00 6.66 0.00 0.00 9.49 7.34 6.62 7.32 0.00 0.00 - 10.45 51.08 1994 0.00 0.83 7.14 8.66 7.70 5.74 7.86 7.64 0.00 0.00 4.67 3.99 4.81 0.00 6.86 0.00 0.00 9.81 7.60 6.79 7.58 0.00 0.00 - 10.45 51.08 1995 0.00 0.85 7.26 9.10 7.87 5.80 8.08 7.82 0.00 0.00 4.72 4.15 4.78 0.00 7.00 0.00 0.00 10.03 7.80 6.92 7.82 0.00 0.00 - 10.45 51.08 1996 0.00 0.86 7.32 9.38 7.98 5.83 8.24 7.95 0.00 0.00 4.75 4.22 4.71 0.00 7.08 0.00 0.00 10.18 7.93 7.01 7.96 0.00 0.00 - 10.45 51.08 1997 0.00 0.87 7.48 9.70 8.08 5.89 8.41 8.08 0.00 0.00 4.71 4.32 4.73 0.00 7.14 0.00 0.00 10.34 8.05 7.08 8.10 0.00 0.00 - 10.45 51.08 1998 0.00 0.87 7.54 10.03 8.20 5.91 9.05 8.18 0.00 0.00 5.02 4.34 4.73 0.00 7.18 0.00 0.00 10.47 8.15 7.16 8.19 0.00 0.00 - 10.45 51.08 1999 0.00 0.87 7.67 10.39 8.29 5.93 9.20 8.31 0.00 0.00 5.09 4.35 4.74 0.00 7.21 0.00 0.00 10.59 8.37 7.22 8.34 0.00 0.00 - 10.45 51.08 2000 0.00 0.80 7.70 10.66 8.36 5.86 9.30 8.40 0.00 0.00 5.17 4.36 4.60 0.00 7.17 0.00 0.00 10.67 8.47 7.24 8.41 0.00 0.00 - 10.45 51.08 2001 0.00 0.80 7.78 11.01 8.43 5.84 9.39 8.47 0.00 0.00 5.21 4.36 4.60 0.00 7.18 0.00 0.00 10.75 8.52 7.27 8.48 0.00 0.00 - 10.45 51.08 2002 0.00 0.80 7.82 11.29 8.49 5.81 9.46 8.56 0.00 0.00 5.26 4.36 4.60 0.00 7.26 0.00 0.00 10.81 8.56 7.33 8.54 0.00 0.00 - 10.45 51.08 2003 0.00 0.80 7.82 11.46 8.51 5.71 9.52 8.58 0.00 0.00 5.20 4.36 4.61 0.00 7.27 0.00 0.00 10.86 8.63 7.38 8.57 0.00 0.00 - 10.45 51.08 2004 0.00 0.80 7.90 11.76 8.61 5.74 9.66 8.64 0.00 0.00 5.27 4.36 4.61 0.00 7.26 0.00 0.00 10.50 8.71 7.44 8.64 0.00 0.00 - 10.45 51.08 2005 0.00 0.80 7.91 12.11 8.66 5.75 9.74 8.75 0.00 0.00 5.21 4.36 4.61 0.00 7.26 0.00 0.00 10.02 8.75 7.47 8.78 0.00 0.00 - 10.45 51.08 2006 0.00 0.80 8.09 12.34 8.76 5.75 9.79 8.81 0.00 0.00 5.25 4.36 4.61 0.00 7.40 0.00 0.00 10.06 8.79 7.53 8.85 0.00 0.00 - 10.45 51.08 2007 0.00 0.80 8.13 12.71 8.82 5.76 9.81 8.96 0.00 0.00 5.38 4.37 4.62 0.00 7.43 0.00 0.00 10.13 8.92 7.60 8.91 0.00 0.00 - 10.45 51.08 2008 0.00 0.80 8.24 12.88 8.82 5.69 9.86 9.06 0.00 0.00 5.44 4.37 4.62 0.00 7.34 0.00 0.00 10.16 8.94 7.68 8.94 0.00 0.00 - 10.45 51.08 2009 0.00 0.80 8.24 13.14 8.85 5.69 9.91 9.10 0.00 0.00 5.51 4.37 4.62 0.00 7.35 0.00 0.00 10.20 8.98 7.86 9.03 0.00 0.00 - 10.45 51.08 2010 0.00 0.80 8.25 13.56 8.87 5.69 10.00 9.13 0.00 0.00 5.54 4.37 4.62 0.00 7.47 0.00 0.00 10.22 9.06 7.89 9.07 0.00 0.00 - 10.45 51.08 2011 0.00 0.80 8.27 13.82 8.97 5.70 10.16 9.18 0.00 0.00 5.64 4.37 4.62 0.00 7.37 0.00 0.00 10.27 9.10 7.93 9.19 0.00 0.00 - 10.45 51.08 2012 0.00 0.80 8.22 14.37 8.97 5.70 10.26 9.26 0.00 0.00 5.72 4.37 4.62 0.00 7.62 0.00 0.00 10.58 9.19 8.00 9.20 0.00 0.00 diff --git a/rLPJGUESS/inst/extdata/outputsForTests/run_npatch/outDirectory/vmaxnlim.out b/rLPJGUESS/inst/extdata/outputsForTests/run_npatch/outDirectory/vmaxnlim.out deleted file mode 100644 index a4aaf49..0000000 --- a/rLPJGUESS/inst/extdata/outputsForTests/run_npatch/outDirectory/vmaxnlim.out +++ /dev/null @@ -1,63 +0,0 @@ - Lon Lat YearAbi_alb BESBet_penBet_pubCar_betCor_aveFag_sylFra_excJun_oxy MRSPic_abiPic_sitPin_sylPin_halPop_treQue_cocQue_ileQue_pubQue_robTil_corUlm_gla C3_gr C4_gr Total - 10.45 51.08 1951 0.00 1.00 1.00 1.00 1.00 1.00 1.00 1.00 0.00 0.00 1.00 1.00 1.00 0.00 1.00 0.00 0.00 1.00 1.00 1.00 1.00 0.00 0.00 1.00 - 10.45 51.08 1952 0.00 1.00 1.00 1.00 1.00 1.00 1.00 1.00 0.00 0.00 1.00 1.00 1.00 0.00 1.00 0.00 0.00 1.00 1.00 1.00 1.00 0.00 0.00 1.00 - 10.45 51.08 1953 0.00 1.00 1.00 1.00 1.00 1.00 1.00 1.00 0.00 0.00 1.00 1.00 1.00 0.00 1.00 0.00 0.00 1.00 1.00 1.00 1.00 0.00 0.00 1.00 - 10.45 51.08 1954 0.00 1.00 1.00 1.00 1.00 1.00 1.00 1.00 0.00 0.00 1.00 1.00 1.00 0.00 1.00 0.00 0.00 1.00 1.00 1.00 1.00 0.00 0.00 1.00 - 10.45 51.08 1955 0.00 1.00 1.00 1.00 1.00 1.00 1.00 1.00 0.00 0.00 1.00 1.00 1.00 0.00 1.00 0.00 0.00 1.00 1.00 1.00 1.00 0.00 0.00 1.00 - 10.45 51.08 1956 0.00 1.00 1.00 1.00 1.00 1.00 1.00 1.00 0.00 0.00 1.00 1.00 1.00 0.00 1.00 0.00 0.00 1.00 1.00 1.00 1.00 0.00 0.00 1.00 - 10.45 51.08 1957 0.00 0.00 1.00 1.00 1.00 1.00 1.00 1.00 0.00 0.00 1.00 1.00 1.00 0.00 1.00 0.00 0.00 1.00 1.00 1.00 1.00 0.00 0.00 1.00 - 10.45 51.08 1958 0.00 0.00 1.00 1.00 1.00 1.00 1.00 1.00 0.00 0.00 1.00 1.00 1.00 0.00 1.00 0.00 0.00 1.00 1.00 1.00 1.00 0.00 0.00 1.00 - 10.45 51.08 1959 0.00 0.00 1.00 1.00 1.00 1.00 1.00 1.00 0.00 0.00 1.00 1.00 1.00 0.00 1.00 0.00 0.00 1.00 1.00 1.00 1.00 0.00 0.00 1.00 - 10.45 51.08 1960 0.00 0.00 1.00 1.00 1.00 1.00 1.00 1.00 0.00 0.00 1.00 1.00 1.00 0.00 1.00 0.00 0.00 1.00 1.00 1.00 1.00 1.00 0.00 1.00 - 10.45 51.08 1961 0.00 0.00 1.00 1.00 1.00 1.00 1.00 1.00 0.00 0.00 1.00 1.00 1.00 0.00 1.00 0.00 0.00 1.00 1.00 1.00 1.00 1.00 0.00 1.00 - 10.45 51.08 1962 0.00 0.00 1.00 1.00 1.00 1.00 1.00 1.00 0.00 0.00 1.00 1.00 1.00 0.00 1.00 0.00 0.00 1.00 1.00 1.00 1.00 1.00 0.00 1.00 - 10.45 51.08 1963 0.00 0.00 1.00 1.00 1.00 1.00 1.00 1.00 0.00 0.00 1.00 1.00 1.00 0.00 1.00 0.00 0.00 1.00 1.00 1.00 1.00 1.00 0.00 1.00 - 10.45 51.08 1964 0.00 0.00 1.00 1.00 1.00 1.00 1.00 1.00 0.00 0.00 1.00 1.00 1.00 0.00 1.00 0.00 0.00 1.00 1.00 1.00 1.00 1.00 0.00 1.00 - 10.45 51.08 1965 0.00 0.00 1.00 1.00 1.00 1.00 1.00 1.00 0.00 0.00 1.00 1.00 1.00 0.00 1.00 0.00 0.00 1.00 1.00 1.00 1.00 1.00 0.00 1.00 - 10.45 51.08 1966 0.00 0.00 1.00 1.00 1.00 1.00 1.00 1.00 0.00 0.00 1.00 1.00 1.00 0.00 1.00 0.00 0.00 1.00 1.00 1.00 1.00 1.00 0.00 1.00 - 10.45 51.08 1967 0.00 0.00 1.00 1.00 1.00 1.00 1.00 1.00 0.00 0.00 1.00 1.00 0.00 0.00 1.00 0.00 0.00 1.00 1.00 1.00 1.00 1.00 0.00 1.00 - 10.45 51.08 1968 0.00 0.00 1.00 1.00 1.00 1.00 1.00 1.00 0.00 0.00 1.00 1.00 0.00 0.00 1.00 0.00 0.00 1.00 1.00 1.00 1.00 1.00 0.00 1.00 - 10.45 51.08 1969 0.00 1.00 1.00 1.00 1.00 1.00 1.00 1.00 0.00 0.00 1.00 1.00 1.00 0.00 1.00 0.00 0.00 1.00 1.00 1.00 1.00 1.00 0.00 1.00 - 10.45 51.08 1970 0.00 1.00 1.00 1.00 1.00 1.00 1.00 1.00 0.00 0.00 1.00 1.00 1.00 0.00 1.00 0.00 0.00 1.00 1.00 1.00 1.00 1.00 0.00 1.00 - 10.45 51.08 1971 0.00 1.00 1.00 1.00 1.00 1.00 1.00 1.00 0.00 0.00 1.00 1.00 1.00 0.00 1.00 0.00 0.00 1.00 1.00 1.00 1.00 1.00 0.00 1.00 - 10.45 51.08 1972 0.00 1.00 1.00 1.00 1.00 1.00 1.00 1.00 0.00 0.00 1.00 1.00 1.00 0.00 1.00 0.00 0.00 1.00 1.00 1.00 1.00 1.00 0.00 1.00 - 10.45 51.08 1973 0.00 1.00 1.00 1.00 1.00 1.00 1.00 1.00 0.00 0.00 1.00 1.00 1.00 0.00 1.00 0.00 0.00 1.00 1.00 1.00 1.00 1.00 0.00 1.00 - 10.45 51.08 1974 0.00 1.00 1.00 1.00 1.00 1.00 1.00 1.00 0.00 0.00 1.00 1.00 1.00 0.00 1.00 0.00 0.00 1.00 1.00 1.00 1.00 0.00 0.00 1.00 - 10.45 51.08 1975 0.00 1.00 1.00 1.00 1.00 1.00 1.00 1.00 0.00 0.00 1.00 1.00 1.00 0.00 1.00 0.00 0.00 1.00 1.00 1.00 1.00 0.00 0.00 1.00 - 10.45 51.08 1976 0.00 1.00 1.00 1.00 1.00 1.00 1.00 1.00 0.00 0.00 1.00 1.00 1.00 0.00 1.00 0.00 0.00 1.00 1.00 1.00 1.00 0.00 0.00 1.00 - 10.45 51.08 1977 0.00 1.00 1.00 1.00 1.00 1.00 1.00 1.00 0.00 0.00 1.00 1.00 1.00 0.00 1.00 0.00 0.00 1.00 1.00 1.00 1.00 0.00 0.00 1.00 - 10.45 51.08 1978 0.00 1.00 1.00 1.00 1.00 1.00 1.00 1.00 0.00 0.00 1.00 1.00 1.00 0.00 1.00 0.00 0.00 1.00 1.00 1.00 1.00 1.00 0.00 1.00 - 10.45 51.08 1979 0.00 1.00 1.00 1.00 1.00 1.00 1.00 1.00 0.00 0.00 1.00 1.00 1.00 0.00 1.00 0.00 0.00 1.00 1.00 1.00 1.00 1.00 0.00 1.00 - 10.45 51.08 1980 0.00 1.00 1.00 1.00 1.00 1.00 1.00 1.00 0.00 0.00 1.00 1.00 1.00 0.00 1.00 0.00 0.00 1.00 1.00 1.00 1.00 1.00 0.00 1.00 - 10.45 51.08 1981 0.00 1.00 1.00 1.00 1.00 1.00 1.00 1.00 0.00 0.00 1.00 1.00 1.00 0.00 1.00 0.00 0.00 1.00 1.00 1.00 1.00 1.00 0.00 1.00 - 10.45 51.08 1982 0.00 1.00 1.00 1.00 1.00 1.00 1.00 1.00 0.00 0.00 1.00 1.00 1.00 0.00 1.00 0.00 0.00 1.00 1.00 1.00 1.00 1.00 0.00 1.00 - 10.45 51.08 1983 0.00 1.00 1.00 1.00 1.00 1.00 1.00 1.00 0.00 0.00 1.00 1.00 1.00 0.00 1.00 0.00 0.00 1.00 1.00 1.00 1.00 1.00 0.00 1.00 - 10.45 51.08 1984 0.00 1.00 1.00 1.00 1.00 1.00 1.00 1.00 0.00 0.00 1.00 1.00 1.00 0.00 1.00 0.00 0.00 1.00 1.00 1.00 1.00 1.00 0.00 1.00 - 10.45 51.08 1985 0.00 1.00 1.00 1.00 1.00 1.00 1.00 1.00 0.00 0.00 1.00 1.00 1.00 0.00 1.00 0.00 0.00 1.00 1.00 1.00 1.00 1.00 0.00 1.00 - 10.45 51.08 1986 0.00 1.00 1.00 1.00 1.00 1.00 1.00 1.00 0.00 0.00 1.00 1.00 1.00 0.00 1.00 0.00 0.00 1.00 1.00 1.00 1.00 1.00 0.00 1.00 - 10.45 51.08 1987 0.00 1.00 1.00 1.00 1.00 1.00 1.00 1.00 0.00 0.00 1.00 1.00 1.00 0.00 1.00 0.00 0.00 1.00 1.00 1.00 1.00 1.00 0.00 1.00 - 10.45 51.08 1988 0.00 1.00 1.00 1.00 1.00 1.00 1.00 1.00 0.00 0.00 1.00 1.00 1.00 0.00 1.00 0.00 0.00 1.00 1.00 1.00 1.00 1.00 0.00 1.00 - 10.45 51.08 1989 0.00 1.00 1.00 1.00 1.00 1.00 1.00 1.00 0.00 0.00 1.00 1.00 1.00 0.00 1.00 0.00 0.00 1.00 1.00 1.00 1.00 1.00 0.00 1.00 - 10.45 51.08 1990 0.00 1.00 1.00 1.00 1.00 1.00 1.00 1.00 0.00 0.00 1.00 1.00 1.00 0.00 1.00 0.00 0.00 1.00 1.00 1.00 1.00 1.00 0.00 1.00 - 10.45 51.08 1991 0.00 1.00 1.00 1.00 1.00 1.00 1.00 1.00 0.00 0.00 1.00 1.00 1.00 0.00 1.00 0.00 0.00 1.00 1.00 1.00 1.00 1.00 0.00 1.00 - 10.45 51.08 1992 0.00 1.00 1.00 1.00 1.00 1.00 1.00 1.00 0.00 0.00 1.00 1.00 1.00 0.00 1.00 0.00 0.00 1.00 1.00 1.00 1.00 1.00 0.00 1.00 - 10.45 51.08 1993 0.00 1.00 1.00 1.00 1.00 1.00 1.00 1.00 0.00 0.00 1.00 1.00 1.00 0.00 1.00 0.00 0.00 1.00 1.00 1.00 1.00 1.00 0.00 1.00 - 10.45 51.08 1994 0.00 1.00 1.00 1.00 1.00 1.00 1.00 1.00 0.00 0.00 1.00 1.00 1.00 0.00 1.00 0.00 0.00 1.00 1.00 1.00 1.00 1.00 0.00 1.00 - 10.45 51.08 1995 0.00 1.00 1.00 1.00 1.00 1.00 1.00 1.00 0.00 0.00 1.00 1.00 1.00 0.00 1.00 0.00 0.00 1.00 1.00 1.00 1.00 1.00 0.00 1.00 - 10.45 51.08 1996 0.00 1.00 1.00 1.00 1.00 1.00 1.00 1.00 0.00 0.00 1.00 1.00 1.00 0.00 1.00 0.00 0.00 1.00 1.00 1.00 1.00 1.00 0.00 1.00 - 10.45 51.08 1997 0.00 1.00 1.00 1.00 1.00 1.00 1.00 1.00 0.00 0.00 1.00 1.00 1.00 0.00 1.00 0.00 0.00 1.00 1.00 1.00 1.00 1.00 0.00 1.00 - 10.45 51.08 1998 0.00 1.00 1.00 1.00 1.00 1.00 1.00 1.00 0.00 0.00 1.00 1.00 1.00 0.00 1.00 0.00 0.00 1.00 1.00 1.00 1.00 1.00 0.00 1.00 - 10.45 51.08 1999 0.00 1.00 1.00 1.00 1.00 1.00 1.00 1.00 0.00 0.00 1.00 1.00 1.00 0.00 1.00 0.00 0.00 1.00 1.00 1.00 1.00 0.00 0.00 1.00 - 10.45 51.08 2000 0.00 1.00 1.00 1.00 1.00 1.00 1.00 1.00 0.00 0.00 1.00 1.00 1.00 0.00 1.00 0.00 0.00 1.00 1.00 1.00 1.00 0.00 0.00 1.00 - 10.45 51.08 2001 0.00 1.00 1.00 1.00 1.00 1.00 1.00 1.00 0.00 0.00 1.00 1.00 1.00 0.00 1.00 0.00 0.00 1.00 1.00 1.00 1.00 0.00 0.00 1.00 - 10.45 51.08 2002 0.00 1.00 1.00 1.00 1.00 1.00 1.00 1.00 0.00 0.00 1.00 1.00 1.00 0.00 1.00 0.00 0.00 1.00 1.00 1.00 1.00 0.00 0.00 1.00 - 10.45 51.08 2003 0.00 1.00 1.00 1.00 1.00 1.00 1.00 1.00 0.00 0.00 1.00 1.00 1.00 0.00 1.00 0.00 0.00 1.00 1.00 1.00 1.00 0.00 0.00 1.00 - 10.45 51.08 2004 0.00 1.00 1.00 1.00 1.00 1.00 1.00 1.00 0.00 0.00 1.00 1.00 1.00 0.00 1.00 0.00 0.00 1.00 1.00 1.00 1.00 0.00 0.00 1.00 - 10.45 51.08 2005 0.00 1.00 1.00 1.00 1.00 1.00 1.00 1.00 0.00 0.00 1.00 1.00 1.00 0.00 1.00 0.00 0.00 1.00 1.00 1.00 1.00 0.00 0.00 1.00 - 10.45 51.08 2006 0.00 1.00 1.00 1.00 1.00 1.00 1.00 1.00 0.00 0.00 1.00 1.00 1.00 0.00 1.00 0.00 0.00 1.00 1.00 1.00 1.00 0.00 0.00 1.00 - 10.45 51.08 2007 0.00 1.00 1.00 1.00 1.00 1.00 1.00 1.00 0.00 0.00 1.00 1.00 1.00 0.00 1.00 0.00 0.00 1.00 1.00 1.00 1.00 0.00 0.00 1.00 - 10.45 51.08 2008 0.00 1.00 1.00 1.00 1.00 1.00 1.00 1.00 0.00 0.00 1.00 1.00 1.00 0.00 1.00 0.00 0.00 1.00 1.00 1.00 1.00 0.00 0.00 1.00 - 10.45 51.08 2009 0.00 1.00 1.00 1.00 1.00 1.00 1.00 1.00 0.00 0.00 1.00 1.00 1.00 0.00 1.00 0.00 0.00 1.00 1.00 1.00 1.00 0.00 0.00 1.00 - 10.45 51.08 2010 0.00 1.00 1.00 1.00 1.00 1.00 1.00 1.00 0.00 0.00 1.00 1.00 1.00 0.00 1.00 0.00 0.00 1.00 1.00 1.00 1.00 0.00 0.00 1.00 - 10.45 51.08 2011 0.00 1.00 1.00 1.00 1.00 1.00 1.00 1.00 0.00 0.00 1.00 1.00 1.00 0.00 1.00 0.00 0.00 1.00 1.00 1.00 1.00 0.00 0.00 1.00 - 10.45 51.08 2012 0.00 1.00 1.00 1.00 1.00 1.00 1.00 1.00 0.00 0.00 1.00 1.00 1.00 0.00 1.00 0.00 0.00 1.00 1.00 1.00 1.00 0.00 0.00 1.00 diff --git a/rLPJGUESS/inst/extdata/outputsForTests/run_nyear_spinup/europe.ins b/rLPJGUESS/inst/extdata/outputsForTests/run_nyear_spinup/europe.ins deleted file mode 100644 index eb07f95..0000000 --- a/rLPJGUESS/inst/extdata/outputsForTests/run_nyear_spinup/europe.ins +++ /dev/null @@ -1,1103 +0,0 @@ -!/////////////////////////////////////////////////////////////////////////////////////// -!// LPJ-GUESS INSTRUCTION SCRIPT FOR COHORT/INDIVIDUAL MODE -!// European Species -!// -!// LPJ-GUESS 3.0 -!// -!// Parameter differences with Thomas Hickler's paper: -!// -!// Hickler, T., Vohland, K., Feehan, J., Miller, P., Fronzek, S., Giesecke, T., Kuehn, I., Carter, T., Smith, B. & -!// Sykes, M. Projecting tree species-based climate-driven changes in European potential natural vegetation -!// with a generalized dynamic vegetation model. In press, Global Ecology & Biogeography. -!// -!// are commented with ! THdiff -!/////////////////////////////////////////////////////////////////////////////////////// - - -!/////////////////////////////////////////////////////////////////////////////////////// -! Output files -! - -! outputdirectory is mandatory. Should be "./" for parallel runs. -outputdirectory "/home/ramiro/Github/TestCode/LPJrunTest/runDirectory/outDirectory/" - -! Prefined yearly output -! These files may be outcommented if their output is not required. -file_cmass "cmass.out" -file_anpp "anpp.out" -file_agpp "agpp.out" -file_fpc "fpc.out" -file_aaet "aaet.out" -file_lai "lai.out" -file_cflux "cflux.out" -file_dens "dens.out" -file_runoff "runoff.out" -file_cpool "cpool.out" -file_clitter "clitter.out" -file_firert "firert.out" -file_aiso "aiso.out" -file_amon "amon.out" -file_speciesheights "speciesheight.out" - -file_nmass "nmass.out" -file_cton_leaf "cton_leaf.out" -file_ngases "ngases.out" -file_nsources "nsources.out" -file_npool "npool.out" -file_nlitter "nlitter.out" -file_nuptake "nuptake.out" -file_nflux "nflux.out" -file_vmaxnlim "vmaxnlim.out" - -! Monthly outputs -file_mnpp "mnpp.out" -file_mlai "mlai.out" -file_mrh "mrh.out" -file_mgpp "mgpp.out" -file_mra "mra.out" -file_mnee "mnee.out" -file_maet "maet.out" -file_mpet "mpet.out" -file_mevap "mevap.out" -file_mintercep "mintercep.out" -file_mrunoff "mrunoff.out" -file_mwcont_upper "mwcont_upper.out" -file_mwcont_lower "mwcont_lower.out" -file_miso "miso.out" -file_mmon "mmon.out" - -!/////////////////////////////////////////////////////////////////////////////////////// - - - -!/////////////////////////////////////////////////////////////////////////////////////// -!// RUN PARAMETERS AND OPTIONS -! - -! Settings recognised by Plib -! Run GUESS with -help option for list of keywords and their meanings - -title 'LPJ-GUESS cohort mode - European species' - -vegmode "cohort" ! "cohort", "individual" or "population" -nyear_spinup 250 ! number of years to spin up the simulation for -ifcalcsla 1 ! whether ctonto calculate SLA from leaf longevity - ! (PFT-specific value can be specified in this file instead) -ifcalccton 1 ! whether to calculate leaf C:N min from leaf longevity - ! (PFT-specific value can be specified in this file instead) -iffire 1 ! whether to implement fire (1) or not (0) -npatch 1 ! number of replicate patches to simulate -patcharea 1000 ! patch area (m2) -estinterval 1 ! years between establishment events in cohort mode -ifdisturb 1 ! whether generic patch-destroying disturbances enabled -distinterval 100 ! average return time for generic patch-destroying disturbances - ! Hickler et al. (2011) used 200 -ifbgestab 1 ! whether background establishment enabled -ifsme 1 ! whether spatial mass effect enabled -ifstochestab 1 ! whether establishment stochastic -ifstochmort 1 ! whether mortality stochastic -ifcdebt 1 ! whether to allow vegetation C storage (1) or not (0) -wateruptake "rootdist" ! "wcont", "rootdist", "smart" or "speciesspecific", - ! see documentation for water_uptake() - -!/////////////////////////////////////////////////////////////////////////////// -! PROCESS SETTINGS SPECIFIC TO NITROGEN -!/////////////////////////////////////////////////////////////////////////////// - -ifcentury 1 ! whether to use CENTURY SOM dynamics (mandatory for N cycling) -ifnlim 0 ! whether plant growth limited by available N -freenyears 100 ! number of years to spin up without N limitation (needed to build up a N pool) -nfix_a 0.102 ! first term in N fixation eqn (Conservative 0.102, Central 0.234, Upper 0.367) -nfix_b 0.524 ! second term in N fixation eqn (Conservative 0.524, Central -0.172, Upper -0.754) -nrelocfrac 0.5 ! fraction of N retranslocated prior to leaf and root shedding - - -!/////////////////////////////////////////////////////////////////////////////// -! SERIALIZATION SETTINGS -!/////////////////////////////////////////////////////////////////////////////// -state_year 500 ! year to save/start state file (no setting = after spinup) -restart 0 ! wheter to start from a state file -save_state 0 ! wheter to save a state file -state_path "" ! directory to put state files in - - -ifsmoothgreffmort 1 ! whether to vary mort_greff smoothly with growth efficiency (1) - ! or to use the standard step-function (0) - ! greff_min values below calibrated for the smooth (1) option -ifdroughtlimitedestab 1 ! whether establishment is limited by growing season drought -ifrainonwetdaysonly 1 ! whether to rain on wet days only (1), or to rain a bit every day (0) -ifbvoc 0 ! whether to include BVOC calculations (1) or not (0) - -!!!!!!!!!!!! landcover parameters !!!!!!!!!!!!!! - -run_landcover 0 ! whether to use (and change) landcover fractions (1) or not (0) - -run_urban 0 ! whether to simulate barren land (1) or not (0) -run_crop 1 ! whether to simulate crop vegetation (1) or not (0) -run_forest 0 ! whether to simulate managed forest (1) or not (0) -run_pasture 0 ! whether to simulate pasture (1) or not (0) -run_natural 0 ! whether to simulate natural vegetation (1) or not (0) -run_peatland 1 ! whether to simulate peatland (1) or not (0) - -lcfrac_fixed 0 ! use landcover fractions (%) below (1) or read from input file (0) -lc_fixed_urban 0 ! URBAN -lc_fixed_cropland 50 ! CROPLAND -lc_fixed_pasture 0 ! PASTURE -lc_fixed_forest 0 ! FOREST -lc_fixed_natural 25 ! NATURAL -lc_fixed_peatland 25 ! PEATLAND -equal_landcover_area 0 ! divide gridcell into equal active landcover fractions - -!/////////////////////////////////////////////////////////////////////////////////////// - - -!/////////////////////////////////////////////////////////////////////////////////////// -!// PARAMETERS FOR PFTS -!// Run GUESS with -help option for list of keywords and their meanings - -group "common" ( - - ! Parameters common to all PFTs - - lambda_max 0.8 ! 0.8 - emax 5 ! 5 - reprfrac 0.1 ! 0.1 - wscal_min 0.35 ! 0.35 - drought_tolerance 1e-04 ! 0.0001 - ! default value - ensures that this has little effect even if - ! ifdroughtlimitedestab is turned on - landcover "natural" - turnover_harv_prod 1 ! 1 -) - - -group "tree" ( - - ! Parameters common to all trees - - common - lifeform "tree" - pathway "c3" - rootdist 0.6 0.4 - crownarea_max 40 ! 40 - turnover_root 0.7 ! 0.7 - ltor_max 1 ! 1 - k_allom2 40 ! 40 - k_allom3 0.67 ! 0.67 - k_rp 1.6 ! 1.6 - wooddens 200 ! 200 - cton_root 29 ! 29 - cton_sap 330 ! 330 - nuptoroot 0.0028 ! 0.0028 - km_volume 1.477e-06 ! 0.000001477 - kest_repr 200 ! 200 - kest_bg 0.1 ! 0.1 - kest_pres 1 ! 1 - litterme 0.3 ! 0.3 - harv_eff 0.7 ! 0.7 - res_outtake 0.75 ! 0.75 - harvest_slow_frac 0.33 ! 0.33 - turnover_harv_prod 0.04 ! 0.04 -) - -group "shrub" ( - common - lifeform "tree" - leafphysiognomy "broadleaf" - pathway "c3" - rootdist 0.6 0.4 - crownarea_max 10 ! 10 - turnover_root 0.7 ! 0.7 - ltor_max 1 ! 1 - k_allom1 100 ! 100 - k_allom2 5 ! 5 - k_allom3 0.67 ! 0.67 - k_rp 1.6 ! 1.6 - wooddens 250 ! 250 - cton_root 29 ! 29 - cton_sap 330 ! 330 - nuptoroot 0.0028 ! 0.0028 - km_volume 1.477e-06 ! 0.000001477 - fnstorage 0.3 ! 0.3 - kest_repr 200 ! 200 - kest_bg 0.1 ! 0.1 - kest_pres 1 ! 1 - litterme 0.3 ! 0.3 - longevity 100 ! 100 -) - -group "needle_leaved" ( - leafphysiognomy "needleleaf" - k_allom1 150 ! 150 - k_latosa 4000 ! 4000 - ga 0.14 ! 0.140 -) - -group "broad_leaved" ( - leafphysiognomy "broadleaf" - k_allom1 250 ! 250 - k_latosa 5000 ! 5000 - leaflong 0.5 ! 0.5 - turnover_leaf 1 ! 1 - ga 0.04 ! 0.040 -) - -group "grass" ( - - ! Parameters common to all grasses - - common - lifeform "grass" - leafphysiognomy "broadleaf" - ltor_max 0.5 ! 0.5 - cton_root 29 ! 29 - nuptoroot 0.00551 ! 0.00551 - km_volume 1.876e-06 ! 0.000001876 - fnstorage 0.3 ! 0.3 - respcoeff 1 ! 1.0 - litterme 0.2 ! 0.2 - ga 0.03 ! 0.030 -) - - -! greff_min values below calibrated for the smooth (ifsmoothgreffmort 1) option -! Many THdiff values here -group "shade_tolerant" ( - est_max 0.05 ! 0.05 - parff_min 350000 ! 350000 - alphar 3 ! 3.0 - greff_min 0.04 ! 0.04 - turnover_sap 0.05 ! 0.05 -) - - -! So far only trial values; not in global version -group "intermediate_shade_tolerant" ( - est_max 0.15 ! 0.15 - parff_min 2e+06 ! 2000000 - alphar 7 ! 7.0 - greff_min 0.06 ! 0.06 - turnover_sap 0.075 ! 0.075 -) - - -! From global version; values from orginal European version after "!" -group "shade_intolerant" ( - est_max 0.2 ! 0.2 - parff_min 2500000 ! 2500000 - alphar 10 ! 10.0 - greff_min 0.08 ! 0.08 - turnover_sap 0.1 ! 0.1 -) - - -group "boreal_tree" ( - respcoeff 1 ! 1.0 - pstemp_min -4 ! -4 - pstemp_low 10 ! 10 - pstemp_high 25 ! 25 - pstemp_max 38 ! 38 -) - -group "temperate_tree" ( - respcoeff 1 ! 1.0 - pstemp_min -2 ! -2 - pstemp_low 15 ! 15 - pstemp_high 25 ! 25 - pstemp_max 38 ! 38 -) - - -!/////////////////////////////////////////////////////////////////////////////////////// -! PFTs and species follow -! -! THdiff notes: -! 1. Thomas Hickler didn't give the values used for the tcmax_est and twmin_est parameters -! 2. rootdist is different for (z1 in brackets): Abi_alb (0.8), Bet_pen (0.8), Bet_pub (0.8), Car_bet (0.7), -! Cor_ave (0.7), Fag_syl (0.8), Fra_exc (0.8) - - -pft "Abi_alb" ( - - include 1 ! 1 - tree - shade_tolerant - temperate_tree - needle_leaved - phenology "evergreen" - !sla 9.3 ! 9.3 - gmin 0.3 ! 0.3 - fnstorage 0.05 ! 0.05 - leaflong 3 ! 3 - turnover_leaf 0.33 ! 0.33 - phengdd5ramp 0 ! 0 - tcmin_surv -2 ! -2 - tcmin_est -2 ! -2 - tcmax_est 2 ! 2 - twmin_est 6 ! 6 - gdd5min_est 1600 ! 1600 - k_chilla 0 ! 0 - k_chillb 100 ! 100 - k_chillk 0.05 ! 0.05 - fireresist 0.1 ! 0.1 - intc 0.06 ! 0.06 - longevity 350 ! 350 - drought_tolerance 0.35 ! 0.35 - eps_iso 0.05 ! 0.05 - seas_iso 0 ! 0 - eps_mon 1.8 ! 1.8 - storfrac_mon 0.5 ! 0.5 -) - - -pft "BES" ( - - ! boreal evergreen shrub - - include 1 ! 1 - shrub - boreal_tree - shade_intolerant - rootdist 0.8 0.2 - phenology "evergreen" - crownarea_max 3 ! 3 - k_allom1 20 ! 20 - k_allom2 5 ! 5 - k_latosa 500 ! 500 - !sla 9.3 ! 9.3 - gmin 0.3 ! 0.3 - leaflong 2 ! 2 - turnover_leaf 0.5 ! 0.5 - turnover_sap 0.05 ! 0.05 - phengdd5ramp 0 ! 0 - tcmin_surv -1000 ! -1000 - tcmin_est -1000 ! -1000 - tcmax_est -1 ! -1.0 - twmin_est -1000 ! -1000 - gdd5min_est 200 ! 200 - longevity 50 ! 50 - k_chilla 0 ! 0 - k_chillb 100 ! 100 - k_chillk 0.05 ! 0.05 - fireresist 0.1 ! 0.1 - intc 0.06 ! 0.06 - drought_tolerance 0.25 ! 0.25 - eps_iso 2 ! 2.0 - seas_iso 0 ! 0 - eps_mon 4 ! 4.0 - storfrac_mon 0.5 ! 0.5 - ga 0.04 ! 0.040 -) - - -pft "Bet_pen" ( - - include 1 ! 1 - tree - shade_intolerant - temperate_tree - broad_leaved - phenology "summergreen" - !sla 24.3 ! 24.3 - gmin 0.5 ! 0.5 - fnstorage 0.15 ! 0.15 - phengdd5ramp 200 ! 200 - tcmin_surv -30 ! -30 - tcmin_est -30 ! -30 - tcmax_est 7 ! 7 - twmin_est 5 ! 5 - gdd5min_est 700 ! 700 - k_chilla 0 ! 0 - k_chillb 350 ! 350 - k_chillk 0.05 ! 0.05 - fireresist 0.1 ! 0.1 - intc 0.02 ! 0.02 - longevity 200 ! 200 - drought_tolerance 0.42 ! 0.42 - eps_iso 0.2 ! 0.2 - seas_iso 1 ! 1 - eps_mon 6 ! 6. - storfrac_mon 0 ! 0. -) - - -pft "Bet_pub" ( - - include 1 ! 1 - tree - shade_intolerant - boreal_tree - broad_leaved - phenology "summergreen" - !sla 24.3 ! 24.3 - gmin 0.5 ! 0.5 - fnstorage 0.15 ! 0.15 - phengdd5ramp 200 ! 200 - tcmin_surv -30 ! -30 - tcmin_est -30 ! -30 - tcmax_est 3 ! 3 - twmin_est 5 ! 5 - gdd5min_est 350 ! 350 - k_chilla 0 ! 0 - k_chillb 350 ! 350 - k_chillk 0.05 ! 0.05 - fireresist 0.1 ! 0.1 - intc 0.02 ! 0.02 - longevity 200 ! 200 - drought_tolerance 0.5 ! 0.5 - eps_iso 0 ! 0. - seas_iso 1 ! 1 - eps_mon 1 ! 1.0 - storfrac_mon 0 ! 0. -) - - -pft "Car_bet" ( - - include 1 ! 1 - tree - intermediate_shade_tolerant - temperate_tree - broad_leaved - phenology "summergreen" - !sla 24.3 ! 24.3 - gmin 0.5 ! 0.5 - fnstorage 0.15 ! 0.15 - phengdd5ramp 200 ! 200 - tcmin_surv -8 ! -8 - tcmin_est -8 ! -8 - tcmax_est 5 ! 5 - twmin_est 5 ! 5 - gdd5min_est 1200 ! 1200 - k_chilla 0 ! 0 - k_chillb 600 ! 600 - k_chillk 0.05 ! 0.05 - fireresist 0.1 ! 0.1 - intc 0.02 ! 0.02 - longevity 350 ! 350 - drought_tolerance 0.33 ! 0.33 - eps_iso 0 ! 0. - seas_iso 1 ! 1 - eps_mon 0.08 ! 0.08 - storfrac_mon 0 ! 0. -) - - -pft "Cor_ave" ( - - include 1 ! 1 - tree - crownarea_max 15 - broad_leaved - intermediate_shade_tolerant - temperate_tree - phenology "summergreen" - crownarea_max 15 ! 15 - k_latosa 4000 ! 4000 - !sla 12 ! 12 - gmin 0.5 ! 0.5 - fnstorage 0.15 ! 0.15 - phengdd5ramp 200 ! 200 - tcmin_surv -11 ! -11 - tcmin_est -11 ! -11 - tcmax_est 7 ! 7 - twmin_est 5 ! 5 - gdd5min_est 800 ! 800 - k_chilla 0 ! 0 - k_chillb 350 ! 350 - k_chillk 0.05 ! 0.05 - fireresist 0.1 ! 0.1 - intc 0.02 ! 0.02 - longevity 100 ! 100 - drought_tolerance 0.3 ! 0.3 - eps_iso 0 ! 0. - seas_iso 1 ! 1 - eps_mon 0 ! 0. - storfrac_mon 0 ! 0. -) - - -pft "Fag_syl" ( - - include 1 ! 1 - tree - shade_tolerant - temperate_tree - broad_leaved - phenology "summergreen" - !sla 24.3 ! 24.3 - gmin 0.5 ! 0.5 - fnstorage 0.15 ! 0.15 - phengdd5ramp 200 ! 200 - tcmin_surv -4 ! -4.0 - tcmin_est -3.5 ! -3.5 - tcmax_est 6 ! 6 - twmin_est 5 ! 5 - gdd5min_est 1500 ! 1500 - k_chilla 0 ! 0 - k_chillb 600 ! 600 - k_chillk 0.05 ! 0.05 - fireresist 0.1 ! 0.1 - intc 0.02 ! 0.02 - longevity 500 ! 500 - drought_tolerance 0.3 ! 0.3 - eps_iso 0 ! 0. - seas_iso 1 ! 1 - eps_mon 10 ! 10. - storfrac_mon 0 ! 0. -) - - -pft "Fra_exc" ( - - include 1 ! 1 - tree - intermediate_shade_tolerant - temperate_tree - broad_leaved - phenology "summergreen" - !sla 24.3 ! 24.3 - gmin 0.5 ! 0.5 - fnstorage 0.15 ! 0.15 - phengdd5ramp 200 ! 200 - tcmin_surv -16 ! -16 - tcmin_est -16 ! -16 - tcmax_est 6 ! 6 - twmin_est 5 ! 5 - gdd5min_est 1100 ! 1100 - k_chilla 0 ! 0 - k_chillb 100 ! 100 - k_chillk 0.05 ! 0.05 - fireresist 0.1 ! 0.1 - intc 0.02 ! 0.02 - longevity 350 ! 350 - drought_tolerance 0.4 ! 0.4 - eps_iso 0 ! 0. - seas_iso 1 ! 1 - eps_mon 0 ! 0. - storfrac_mon 0 ! 0. -) - - -pft "Jun_oxy" ( - - ! Thomas Hickler's values - - include 1 ! 1 - tree ! THdiff: - shrub - shade_intolerant - temperate_tree - needle_leaved - rootdist 0.5 0.5 - phenology "evergreen" - k_latosa 1500 ! 1500 - crownarea_max 10 ! 10 - !sla 10 ! 10 - gmin 0.5 ! 0.5 - fnstorage 0.05 ! 0.05 - leaflong 1.5 ! 1.5 - turnover_leaf 0.6667 ! 0.6667 - phengdd5ramp 0 ! 0 - tcmin_surv 0 ! 0 - tcmin_est 1 ! 1 - tcmax_est 1000 ! 1000 - twmin_est -1000 ! -1000 - gdd5min_est 2200 ! 2200 - k_chilla 0 ! 0 - k_chillb 100 ! 100 - k_chillk 0.05 ! 0.05 - fireresist 0.4 ! 0.4 - intc 0.02 ! 0.02 - longevity 200 ! 200 - drought_tolerance 0.01 ! 0.01 - eps_iso 0 ! 0. - seas_iso 0 ! 0 - eps_mon 2 ! 2.0 - storfrac_mon 0.5 ! 0.5 -) - - -pft "MRS" ( - - ! Thomas Hickler's values - ! Mediterranean raingreen low shrub: - ! Cistus, Rosmarinus, Genista, Lavandula, Erica - - include 1 ! 1 - shrub ! THdiff: - has k_allom1 as 250 - shade_intolerant - temperate_tree - rootdist 0.9 0.1 - phenology "raingreen" - k_latosa 1500 ! 1500 - !sla 10 ! 10 - gmin 0.5 ! 0.5 - leaflong 0.5 ! 0.5 - turnover_leaf 1 ! 1 - phengdd5ramp 0 ! 0 - tcmin_surv 0 ! 0 - tcmin_est 1 ! 1 - tcmax_est 1000 ! 1000 - twmin_est -1000 ! -1000 - gdd5min_est 2200 ! 2200 - k_chilla 0 ! 0 - k_chillb 100 ! 100 - k_chillk 0.05 ! 0.05 - fireresist 0.3 ! 0.3 - intc 0.02 ! 0.02 - longevity 100 ! 100 - drought_tolerance 0.01 ! 0.01 - eps_iso 2 ! 2.0 - seas_iso 0 ! 0 - eps_mon 4 ! 4.0 - storfrac_mon 0.5 ! 0.5 - ga 0.04 ! 0.040 -) - - -pft "Pic_abi" ( - - include 1 ! 1 - tree - shade_tolerant - boreal_tree - needle_leaved - rootdist 0.8 0.2 - phenology "evergreen" - !sla 9.3 ! 9.3 - gmin 0.3 ! 0.3 - fnstorage 0.05 ! 0.05 - leaflong 3 ! 3 - turnover_leaf 0.33 ! 0.33 - phengdd5ramp 0 ! 0 - tcmin_surv -30 ! -30 - tcmin_est -30 ! -30 - tcmax_est -1.5 ! -1.5 - twmin_est 5 ! 5 - gdd5min_est 600 ! 600 - k_chilla 0 ! 0 - k_chillb 100 ! 100 - k_chillk 0.05 ! 0.05 - fireresist 0.1 ! 0.1 - intc 0.06 ! 0.06 - longevity 500 ! 500 - drought_tolerance 0.43 ! 0.43 - eps_iso 0.5 ! 0.5 - seas_iso 0 ! 0 - eps_mon 6 ! 6.0 - storfrac_mon 0.5 ! 0.5 -) - - -pft "Pic_sit" ( - - ! Bjarki's values - - include 1 ! 1 - tree - intermediate_shade_tolerant ! Savill's silviculture book - boreal_tree - needle_leaved - rootdist 0.8 0.2 ! ThomasH - phenology "evergreen" - k_latosa 4500 ! 4500 - !sla 9.3 ! 9.3 - gmin 0.3 ! 0.3 - fnstorage 0.05 ! 0.05 - leaflong 4 ! 4 - turnover_leaf 0.25 ! 0.25 - phengdd5ramp 0 ! 0 - tcmin_surv -18 ! -18 - tcmin_est -17 ! -17 - tcmax_est 5.5 ! 5.5 - twmin_est -1000 ! -1000 - gdd5min_est 450 ! 450 - k_chilla 0 ! 0 - k_chillb 100 ! 100 - k_chillk 0.05 ! 0.05 - fireresist 0.1 ! 0.1 - intc 0.06 ! 0.06 - longevity 700 ! 700 - drought_tolerance 0.5 ! 0.5 - eps_iso 0 ! 0. - seas_iso 0 ! 0 - eps_mon 0 ! 0. - storfrac_mon 0.5 ! 0.5 - - ! wooddens 200 - Should be less dens than P. abies (Savill) - ! turnover_sap 0.065 ! Bjarki 30% + abies! -) - - - -pft "Pin_syl" ( - - include 1 ! 1 - tree - intermediate_shade_tolerant - boreal_tree - needle_leaved - phenology "evergreen" - k_latosa 3000 ! 3000 - !sla 9.3 ! 9.3 - gmin 0.3 ! 0.3 - fnstorage 0.05 ! 0.05 - leaflong 2 ! 2 - turnover_leaf 0.5 ! 0.5 - phengdd5ramp 0 ! 0 - tcmin_surv -30 ! -30 - tcmin_est -30 ! -30 - tcmax_est -1 ! -1.0 - twmin_est 5 ! 5 - gdd5min_est 500 ! 500 - k_chilla 0 ! 0 - k_chillb 100 ! 100 - k_chillk 0.05 ! 0.05 - fireresist 0.2 ! 0.2 - intc 0.06 ! 0.06 - longevity 350 ! 350 - drought_tolerance 0.25 ! 0.25 - eps_iso 0 ! 0. - seas_iso 0 ! 0 - eps_mon 4 ! 4.0 - storfrac_mon 0.5 ! 0.5 -) - - -pft "Pin_hal" ( - - ! Thomas Hickler's values - - include 1 ! 1 - tree - shade_intolerant - temperate_tree - needle_leaved - phenology "evergreen" - k_latosa 3000 ! 3000 - !sla 9.3 ! 9.3 - gmin 0.3 ! 0.3 - fnstorage 0.05 ! 0.05 - leaflong 2 ! 2 - turnover_leaf 0.5 ! 0.5 - phengdd5ramp 0 ! 0 - tcmin_surv 3 ! 3 - tcmin_est 3 ! 3 - tcmax_est 9 ! 9 - twmin_est 21 ! 21 - gdd5min_est 3000 ! 3000 - k_chilla 0 ! 0 - k_chillb 100 ! 100 - k_chillk 0.05 ! 0.05 - fireresist 0.2 ! 0.2 - intc 0.06 ! 0.06 - longevity 350 ! 350 - drought_tolerance 0.05 ! 0.05 - eps_iso 0 ! 0. - seas_iso 0 ! 0 - eps_mon 10 ! 10.0 - storfrac_mon 0.5 ! 0.5 -) - - -pft "Pop_tre" ( - - ! Not included in Thomas Hickler's paper - - include 1 ! 1 - tree - shade_intolerant - temperate_tree - broad_leaved - rootdist 0.7 0.3 - phenology "summergreen" - !sla 24.3 ! 24.3 - gmin 0.5 ! 0.5 - fnstorage 0.15 ! 0.15 - phengdd5ramp 200 ! 200 - tcmin_surv -31 ! -31 - tcmin_est -30 ! -30 - tcmax_est 6 ! 6 - twmin_est -1000 ! -1000 - gdd5min_est 500 ! 500 - k_chilla 0 ! 0 - k_chillb 350 ! 350 - k_chillk 0.05 ! 0.05 - fireresist 0.2 ! 0.2 - intc 0.02 ! 0.02 - longevity 160 ! 160 - drought_tolerance 0.4 ! 0.4 - eps_iso 20 ! 20. - seas_iso 1 ! 1 - eps_mon 4 ! 4.0 - storfrac_mon 0 ! 0. -) - - -pft "Que_coc" ( - - ! Thomas Hickler's values - - include 1 ! 1 - shrub ! THdiff: - has k_allom1 as 250 - intermediate_shade_tolerant - temperate_tree - rootdist 0.5 0.5 - phenology "evergreen" - k_latosa 2500 ! 2500 - !sla 10 ! 10 - gmin 0.5 ! 0.5 - leaflong 1.5 ! 1.5 - turnover_leaf 0.6667 ! 0.6667 - phengdd5ramp 0 ! 0 - tcmin_surv 0 ! 0 - tcmin_est 0 ! 0 - tcmax_est 11 ! 11 - twmin_est 21 ! 21 - gdd5min_est 2200 ! 2200 - k_chilla 0 ! 0 - k_chillb 100 ! 100 - k_chillk 0.05 ! 0.05 - fireresist 0.3 ! 0.3 - intc 0.02 ! 0.02 - longevity 350 ! 350 - drought_tolerance 0.1 ! 0.1 - eps_iso 0.1 ! 0.1 - seas_iso 0 ! 0 - eps_mon 10 ! 10.0 - storfrac_mon 0 ! 0. - ga 0.04 ! 0.040 -) - - -pft "Que_ile" ( - - include 1 ! 1 - tree - intermediate_shade_tolerant - temperate_tree - broad_leaved - rootdist 0.5 0.5 - phenology "evergreen" - k_latosa 3000 ! 3000 - !sla 9.3 ! 9.3 - gmin 0.5 ! 0.5 - fnstorage 0.05 ! 0.05 - leaflong 2 ! 2 - turnover_leaf 0.5 ! 0.5 - phengdd5ramp 0 ! 0 - tcmin_surv 3 ! 3 - tcmin_est 3 ! 3 - tcmax_est 7 ! 7 - twmin_est 5 ! 5 - gdd5min_est 1800 ! 1800 - k_chilla 0 ! 0 - k_chillb 100 ! 100 - k_chillk 0.05 ! 0.05 - fireresist 0.3 ! 0.3 - intc 0.02 ! 0.02 - longevity 350 ! 350 - drought_tolerance 0.1 ! 0.1 - eps_iso 0.05 ! 0.05 - seas_iso 0 ! 0 - eps_mon 16 ! 16.0 - storfrac_mon 0 ! 0. -) - - -pft "Que_pub" ( - - ! Thomas Hickler's values - - include 1 ! 1 - tree - intermediate_shade_tolerant - temperate_tree - broad_leaved - phenology "summergreen" - !sla 24.3 ! 24.3 - gmin 0.5 ! 0.5 - fnstorage 0.15 ! 0.15 - phengdd5ramp 200 ! 200 - tcmin_surv -6 ! -6 - tcmin_est -5 ! -5 - tcmax_est 6 ! 6 - twmin_est -1000 ! -1000 - gdd5min_est 1900 ! 1900 - k_chilla 0 ! 0 - k_chillb 100 ! 100 - k_chillk 0.05 ! 0.05 - fireresist 0.2 ! 0.2 - intc 0.02 ! 0.02 - longevity 500 ! 500 - drought_tolerance 0.2 ! 0.2 - eps_iso 50 ! 50.0 - seas_iso 1 ! 1 - eps_mon 0 ! 0. - storfrac_mon 0 ! 0. -) - - -pft "Que_rob" ( - - include 1 ! 1 - tree - intermediate_shade_tolerant - temperate_tree - broad_leaved - phenology "summergreen" - !sla 24.3 ! 24.3 - gmin 0.5 ! 0.5 - fnstorage 0.15 ! 0.15 - phengdd5ramp 200 ! 200 - tcmin_surv -10 ! -10 - tcmin_est -9 ! -9 - tcmax_est 6 ! 6 - twmin_est 5 ! 5 - gdd5min_est 1100 ! 1100 - k_chilla 0 ! 0 - k_chillb 100 ! 100 - k_chillk 0.05 ! 0.05 - fireresist 0.2 ! 0.2 - intc 0.02 ! 0.02 - longevity 500 ! 500 - drought_tolerance 0.25 ! 0.25 - eps_iso 40 ! 40.0 - seas_iso 1 ! 1 - eps_mon 0 ! 0. - storfrac_mon 0 ! 0. -) - - -pft "Til_cor" ( - - include 1 ! 1 - tree - intermediate_shade_tolerant - temperate_tree - broad_leaved - rootdist 0.8 0.2 - phenology "summergreen" - !sla 24.3 ! 24.3 - gmin 0.5 ! 0.5 - fnstorage 0.15 ! 0.15 - phengdd5ramp 200 ! 200 - tcmin_surv -12 ! -12 - tcmin_est -11 ! -11 - tcmax_est 5 ! 5 - twmin_est 5 ! 5 - gdd5min_est 1100 ! 1100 - k_chilla 0 ! 0 - k_chillb 600 ! 600 - k_chillk 0.05 ! 0.05 - fireresist 0.1 ! 0.1 - intc 0.02 ! 0.02 - longevity 350 ! 350 - drought_tolerance 0.33 ! 0.33 - eps_iso 0 ! 0. - seas_iso 1 ! 1 - eps_mon 0 ! 0. - storfrac_mon 0 ! 0. -) - - -pft "Ulm_gla" ( - - ! Not included in Thomas Hickler's paper - - include 1 ! 1 - tree - intermediate_shade_tolerant - temperate_tree - broad_leaved - phenology "summergreen" - !sla 24.3 ! 24.3 - gmin 0.5 ! 0.5 - fnstorage 0.15 ! 0.15 - phengdd5ramp 200 ! 200 - tcmin_surv -10.5 ! -10.5 - tcmin_est -9.5 ! -9.5 - tcmax_est 6 ! 6 - twmin_est 5 ! 5 - gdd5min_est 850 ! 850 - k_chilla 0 ! 0 - k_chillb 100 ! 100 - k_chillk 0.05 ! 0.05 - fireresist 0.1 ! 0.1 - intc 0.02 ! 0.02 - longevity 350 ! 350 - drought_tolerance 0.4 ! 0.4 - eps_iso 0 ! 0. - seas_iso 1 ! 1 - eps_mon 0 ! 0. - storfrac_mon 0 ! 0. -) - - -pft "C3_gr" ( - - include 1 ! 1 - grass - pathway "c3" - rootdist 0.9 0.1 - phenology "any" - !sla 32.4 ! 32.4 - gmin 0.5 ! 0.5 - leaflong 0.5 ! 0.5 - turnover_leaf 1 ! 1 - turnover_root 0.7 ! 0.7 - phengdd5ramp 100 ! 100 - pstemp_min -5 ! -5 - pstemp_low 10 ! 10 - pstemp_high 30 ! 30 - pstemp_max 45 ! 45 - tcmin_surv -1000 ! -1000 - tcmin_est -1000 ! -1000 - tcmax_est 1000 ! 1000 - twmin_est -1000 ! -1000 - gdd5min_est 0 ! 0 - parff_min 2e+06 ! 2000000 - fireresist 0.5 ! 0.5 - intc 0.01 ! 0.01 - drought_tolerance 0.01 ! 0.01 - eps_iso 0 ! 0. - seas_iso 1 ! 1 - eps_mon 1 ! 1.0 - storfrac_mon 0.5 ! 0.5 -) - - -pft "C4_gr" ( - - include 1 ! 1 - grass - pathway "c4" - rootdist 0.9 0.1 - phenology "any" - gmin 0.5 ! 0.5 - leaflong 0.5 ! 0.5 - turnover_leaf 1 ! 1 - turnover_root 0.7 ! 0.7 - phengdd5ramp 100 ! 100 - pstemp_min 6 ! 6 - pstemp_low 20 ! 20 - pstemp_high 45 ! 45 - pstemp_max 55 ! 55 - tcmin_surv 15.5 ! 15.5 - tcmin_est 15.5 ! 15.5 - tcmax_est 1000 ! 1000 - twmin_est -1000 ! -1000 - gdd5min_est 0 ! 0 - parff_min 1e+06 ! 1000000 - fireresist 0.5 ! 0.5 - intc 0.01 ! 0.01 - drought_tolerance 0.01 ! 0.01 - eps_iso 0 ! 0. - seas_iso 1 ! 1 - eps_mon 1 ! 1.0 - storfrac_mon 0.5 ! 0.5 -) - - -! Reference: Savill's silviculture book: -! The Silviculture of Trees used in British Forestry, Peter S. Savill diff --git a/rLPJGUESS/inst/extdata/outputsForTests/run_nyear_spinup/europe_cf.ins b/rLPJGUESS/inst/extdata/outputsForTests/run_nyear_spinup/europe_cf.ins deleted file mode 100644 index b2b4f2f..0000000 --- a/rLPJGUESS/inst/extdata/outputsForTests/run_nyear_spinup/europe_cf.ins +++ /dev/null @@ -1,50 +0,0 @@ -! -! Instruction file with European species to be used with the -! CF I/O module. -! -! Make sure to start LPJ-GUESS with -input cf when using this -! instruction file. -! - -import "/home/ramiro/Github/TestCode/LPJrunTest/runDirectory/europe.ins" - -coordinates_precision 2 - -!/////////////////////////////////////////////////////////////////////////////////////// -! Forcing Data & gridlists -! - -param "file_gridlist" (str "/home/ramiro/Github/TestCode/LPJrunTest/runDirectory/gridlist.txt") - -param "file_co2" (str "/home/ramiro/Github/TestCode/LPJrunTest/crudata/co2_1765-2500_RCP3.txt") -param "file_cru" (str "/home/ramiro/Github/TestCode/LPJrunTest/crudata/cru_1901_2006.bin") -param "file_cru_misc" (str "/home/ramiro/Github/TestCode/LPJrunTest/crudata/cru_1901_2006misc.bin") - -! N deposition (blank string to use constant pre-industrial level of 2 kgN/ha/year) -! type of N deposition time series: either "historic" (default), "rcp26", "rcp45","rcp60","rcp85" as ndep_timeseries in cfinput.cpp -! will work with "GlobalNitrogenDeposition.bin" no matter the value of ndep_timeseries, it will anyway get the right input file -! won´t work with any other RCP ndep file, no matter the value of ndep_timeseries - -param "file_ndep" (str "/home/ramiro/Github/TestCode/LPJrunTest/crudata/GlobalNitrogenDeposition.bin") - - -param "file_temp" (str "/home/ramiro/Github/TestCode/LPJrunTest/temp.nc") -param "variable_temp" (str "temp") - -param "file_prec" (str "/home/ramiro/Github/TestCode/LPJrunTest/prec.nc") -param "variable_prec" (str "prec") - -param "file_insol" (str "/home/ramiro/Github/TestCode/LPJrunTest/rad.nc") -param "variable_insol" (str "rad") - -! Wet days can only be used with monthly precipitation - param "file_wetdays" (str "") -! param "variable_wetdays" (str "_variable_wetdays_") - -! Min/max temp is required for BVOC, -! if BVOC is switched off these can be set to "" - param "file_min_temp" (str "") -! param "variable_min_temp" (str "_variable_min_temp_") - - param "file_max_temp" (str "") -! param "variable_max_temp" (str "_variable_max_temp_") diff --git a/rLPJGUESS/inst/extdata/outputsForTests/run_nyear_spinup/gridlist.txt b/rLPJGUESS/inst/extdata/outputsForTests/run_nyear_spinup/gridlist.txt deleted file mode 100644 index c8ed25d..0000000 --- a/rLPJGUESS/inst/extdata/outputsForTests/run_nyear_spinup/gridlist.txt +++ /dev/null @@ -1 +0,0 @@ -0 Erfurt diff --git a/rLPJGUESS/inst/extdata/outputsForTests/run_nyear_spinup/guess.log b/rLPJGUESS/inst/extdata/outputsForTests/run_nyear_spinup/guess.log deleted file mode 100644 index 575587d..0000000 --- a/rLPJGUESS/inst/extdata/outputsForTests/run_nyear_spinup/guess.log +++ /dev/null @@ -1,13 +0,0 @@ -[LPJ-GUESS Thu Jun 21 19:05:39 2018] - - - --------------------------------------------------- -LPJ-GUESS cohort mode - European species --------------------------------------------------- - -Commencing simulation for gridcell at (10.453,51.0792) -Description: Erfurt -Using soil code and Nitrogen deposition for (10.0,51.0) - -Finished diff --git a/rLPJGUESS/inst/extdata/outputsForTests/run_nyear_spinup/outDirectory/aaet.out b/rLPJGUESS/inst/extdata/outputsForTests/run_nyear_spinup/outDirectory/aaet.out deleted file mode 100644 index 0425d72..0000000 --- a/rLPJGUESS/inst/extdata/outputsForTests/run_nyear_spinup/outDirectory/aaet.out +++ /dev/null @@ -1,63 +0,0 @@ - Lon Lat Year Abi_alb BES Bet_pen Bet_pub Car_bet Cor_ave Fag_syl Fra_exc Jun_oxy MRS Pic_abi Pic_sit Pin_syl Pin_hal Pop_tre Que_coc Que_ile Que_pub Que_rob Til_cor Ulm_gla C3_gr C4_gr Total - 10.45 51.08 1951 0.00 2.78 14.04 13.06 11.59 7.79 2.45 6.46 0.00 0.00 1.45 3.95 4.05 0.00 14.53 0.00 0.00 8.00 12.44 9.86 6.46 252.93 0.00 371.84 - 10.45 51.08 1952 0.00 3.07 20.71 19.93 17.23 10.62 3.73 9.58 0.00 0.00 1.84 4.94 5.35 0.00 20.74 0.00 0.00 11.96 18.56 13.54 9.58 153.02 0.00 324.37 - 10.45 51.08 1953 0.00 4.74 35.58 35.05 30.42 18.02 6.62 16.87 0.00 0.00 3.03 8.05 8.30 0.00 36.36 0.00 0.00 21.07 32.71 24.96 16.87 0.00 0.00 298.66 - 10.45 51.08 1954 0.00 4.23 37.61 38.09 32.27 18.28 7.06 17.98 0.00 0.00 2.93 7.71 7.95 0.00 38.31 0.00 0.00 22.46 34.87 26.32 17.98 0.00 0.00 314.07 - 10.45 51.08 1955 0.00 3.98 38.42 42.13 34.71 18.78 7.62 18.38 0.00 0.00 2.92 7.54 7.82 0.00 41.02 0.00 0.00 24.10 37.39 28.39 19.30 0.00 0.00 332.50 - 10.45 51.08 1956 0.00 3.70 40.30 46.47 36.62 18.95 8.08 19.45 0.00 0.00 2.85 7.17 7.63 0.00 42.00 0.00 0.00 24.51 39.52 28.91 20.43 0.00 0.00 346.58 - 10.45 51.08 1957 0.00 4.04 49.93 58.46 45.63 22.49 10.12 24.31 0.00 0.00 3.19 7.81 8.63 0.00 51.58 0.00 0.00 29.18 49.34 35.37 25.53 0.00 0.00 425.61 - 10.45 51.08 1958 0.00 3.63 51.51 61.82 46.27 22.04 10.60 24.08 0.00 0.00 2.79 7.36 8.13 0.00 51.02 0.00 0.00 30.42 51.38 35.84 26.62 0.00 0.00 433.52 - 10.45 51.08 1959 0.00 2.29 45.50 59.71 42.08 19.26 9.99 22.63 0.00 0.00 2.21 5.70 6.63 0.00 45.44 0.00 0.00 27.40 47.03 30.66 23.82 0.00 0.00 390.35 - 10.45 51.08 1960 0.00 1.81 46.48 65.07 45.47 18.97 10.87 24.56 0.00 0.00 2.34 4.69 6.60 0.00 49.51 0.00 0.00 29.73 50.84 33.27 25.85 0.00 0.00 416.06 - 10.45 51.08 1961 0.00 1.30 46.70 67.94 48.58 18.10 11.69 26.37 0.00 0.00 2.26 3.98 6.32 0.00 49.77 0.00 0.00 31.93 54.55 34.79 27.76 0.00 0.00 432.02 - 10.45 51.08 1962 0.00 0.72 36.33 55.40 38.33 13.18 9.51 20.28 0.00 0.00 1.62 2.22 4.60 0.00 39.23 0.00 0.00 24.79 44.26 27.55 22.54 0.00 0.00 340.55 - 10.45 51.08 1963 0.00 0.04 41.13 68.37 43.95 14.43 11.34 23.95 0.00 0.00 1.53 1.32 4.81 0.00 38.69 0.00 0.00 29.28 50.90 33.68 26.61 0.00 0.00 390.02 - 10.45 51.08 1964 0.00 0.00 36.39 71.81 44.43 11.34 11.59 22.91 0.00 0.00 1.25 0.94 4.32 0.00 38.14 0.00 0.00 29.65 51.22 33.14 26.96 0.00 0.00 384.09 - 10.45 51.08 1965 0.00 0.00 35.27 78.42 46.90 10.76 12.75 25.01 0.00 0.00 0.90 0.58 3.84 0.00 40.88 0.00 0.00 32.36 54.43 33.56 29.42 0.00 0.00 405.08 - 10.45 51.08 1966 0.00 0.00 38.33 93.43 51.95 10.73 14.75 28.57 0.00 0.00 0.74 0.15 3.83 0.00 37.96 0.00 0.00 36.97 60.50 35.19 31.93 0.00 0.00 445.02 - 10.45 51.08 1967 0.00 0.00 35.96 104.26 55.52 9.98 15.99 30.61 0.00 0.00 0.00 0.27 3.44 0.00 38.29 0.00 0.00 39.62 63.03 36.92 34.22 0.00 0.00 468.09 - 10.45 51.08 1968 0.00 0.00 26.74 99.87 50.49 8.17 14.82 28.00 0.00 0.00 0.00 0.00 2.66 0.00 30.25 0.00 0.00 34.59 57.66 32.77 31.30 0.00 0.00 417.33 - 10.45 51.08 1969 0.00 0.00 24.55 109.30 52.62 7.15 15.73 29.26 0.00 0.00 0.00 0.00 1.79 0.00 29.04 0.00 0.00 36.15 60.25 31.36 32.71 0.00 0.00 429.91 - 10.45 51.08 1970 0.00 0.00 22.45 109.49 52.09 5.89 15.85 29.07 0.00 0.00 0.00 0.02 0.00 0.00 24.63 0.00 0.00 35.91 54.73 31.09 32.49 0.00 0.00 413.71 - 10.45 51.08 1971 0.00 0.00 19.69 102.99 46.69 4.36 14.48 26.22 0.00 0.00 0.00 0.02 0.00 0.00 19.90 0.00 0.00 32.40 47.82 25.06 29.31 0.00 0.00 368.94 - 10.45 51.08 1972 0.00 0.00 20.99 115.00 51.29 3.04 16.31 29.00 0.00 0.00 0.00 0.01 0.00 0.00 18.50 0.00 0.00 34.12 51.18 27.75 32.42 0.00 0.00 399.62 - 10.45 51.08 1973 0.00 0.00 16.27 102.10 41.91 2.01 14.03 24.57 0.00 0.00 0.00 0.00 0.00 0.00 14.83 0.00 0.00 27.46 41.91 21.04 27.46 0.00 0.00 333.59 - 10.45 51.08 1974 0.00 0.00 16.91 132.55 50.19 1.43 17.77 30.49 0.00 0.00 0.00 0.00 0.00 0.00 17.83 0.00 0.00 34.08 50.22 26.26 34.08 0.00 0.00 411.79 - 10.45 51.08 1975 0.00 0.00 16.76 140.81 50.73 0.00 18.29 31.10 0.00 0.00 0.00 0.00 0.00 0.00 13.12 0.00 0.00 34.76 51.23 22.63 34.76 0.00 0.00 414.18 - 10.45 51.08 1976 0.00 0.00 10.11 106.63 34.32 0.00 13.52 21.25 0.00 0.00 0.00 0.00 0.00 0.00 8.61 0.00 0.00 25.23 35.86 15.87 23.90 0.00 0.00 295.31 - 10.45 51.08 1977 0.00 0.00 9.79 138.41 40.57 0.00 17.19 24.54 0.00 0.00 0.00 0.00 0.00 0.00 8.18 0.00 0.00 31.09 44.18 18.54 29.45 0.00 0.00 361.94 - 10.45 51.08 1978 0.00 0.00 6.96 145.41 42.26 0.00 18.26 25.71 0.00 0.00 0.00 0.00 0.00 0.00 8.23 0.00 0.00 30.85 44.56 17.82 27.42 0.00 0.00 367.47 - 10.45 51.08 1979 0.00 0.00 6.80 152.34 42.36 0.00 18.69 25.90 0.00 0.00 0.00 0.00 0.00 0.00 7.16 0.00 0.00 29.35 44.89 16.45 27.63 0.00 0.00 371.57 - 10.45 51.08 1980 0.00 0.00 4.68 157.62 42.01 0.00 18.93 25.80 0.00 0.00 0.00 0.00 0.00 0.00 6.77 0.00 0.00 29.24 43.00 14.66 27.52 0.00 0.00 370.24 - 10.45 51.08 1981 0.00 0.00 4.89 178.65 45.43 0.00 21.01 27.96 0.00 0.00 0.00 0.00 0.00 0.00 6.26 0.00 0.00 29.83 42.88 13.69 27.96 0.00 0.00 398.56 - 10.45 51.08 1982 0.00 0.00 3.19 156.83 36.61 0.00 17.97 23.59 0.00 0.00 0.00 0.00 0.00 0.00 3.05 0.00 0.00 25.17 34.60 10.42 23.59 0.00 0.00 335.02 - 10.45 51.08 1983 0.00 0.00 2.63 187.18 42.50 0.00 21.85 27.55 0.00 0.00 0.00 0.00 0.00 0.00 2.02 0.00 0.00 27.55 40.40 11.15 27.55 0.00 0.00 390.37 - 10.45 51.08 1984 0.00 0.00 2.07 158.94 33.23 0.00 18.29 22.52 0.00 0.00 0.00 0.00 0.00 0.00 1.60 0.00 0.00 22.52 33.04 9.08 22.52 0.00 0.00 323.82 - 10.45 51.08 1985 0.00 0.00 2.39 198.51 38.06 0.00 22.42 27.02 0.00 0.00 0.00 0.00 0.00 0.00 1.21 0.00 0.00 25.22 37.83 9.65 27.02 0.00 0.00 389.34 - 10.45 51.08 1986 0.00 0.00 2.32 199.62 38.11 0.00 23.11 23.55 0.00 0.00 0.00 0.00 0.00 0.00 1.16 0.00 0.00 23.55 38.04 9.41 27.17 0.00 0.00 386.02 - 10.45 51.08 1987 0.00 0.00 2.05 181.15 34.66 0.00 21.49 21.53 0.00 0.00 0.00 0.00 0.00 0.00 1.02 0.00 0.00 21.53 33.13 8.42 24.84 0.00 0.00 349.81 - 10.45 51.08 1988 0.00 0.00 2.17 199.86 37.97 0.00 24.25 23.70 0.00 0.00 0.00 0.00 0.00 0.00 1.05 0.00 0.00 23.70 36.47 8.71 27.35 0.00 0.00 385.25 - 10.45 51.08 1989 0.00 0.00 1.86 185.41 32.21 0.00 22.23 21.09 0.00 0.00 0.00 0.00 0.00 0.00 0.90 0.00 0.00 21.09 32.45 7.70 24.34 0.00 0.00 349.29 - 10.45 51.08 1990 0.00 0.00 1.31 216.35 35.55 0.00 25.49 21.48 0.00 0.00 0.00 0.00 0.00 0.00 0.47 0.00 0.00 23.27 35.79 8.23 26.85 0.00 0.00 394.79 - 10.45 51.08 1991 0.00 0.00 1.05 186.03 29.24 0.00 21.60 17.86 0.00 0.00 0.00 0.00 0.00 0.00 0.38 0.00 0.00 19.35 29.77 6.27 22.33 0.00 0.00 333.89 - 10.45 51.08 1992 0.00 0.00 1.08 215.31 28.80 0.00 24.36 19.43 0.00 0.00 0.00 0.00 0.00 0.00 0.39 0.00 0.00 21.04 30.76 6.60 24.28 0.00 0.00 372.05 - 10.45 51.08 1993 0.00 0.00 1.07 236.46 28.50 0.00 26.44 20.32 0.00 0.00 0.00 0.00 0.00 0.00 0.38 0.00 0.00 20.32 32.18 6.40 25.41 0.00 0.00 397.48 - 10.45 51.08 1994 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 - 10.45 51.08 1995 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 - 10.45 51.08 1996 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 - 10.45 51.08 1997 0.00 1.25 7.27 6.44 5.03 3.26 1.57 6.83 0.00 0.00 0.49 1.82 2.48 0.00 4.99 0.00 0.00 3.81 4.76 5.03 4.29 252.94 0.00 312.25 - 10.45 51.08 1998 0.00 1.60 11.73 10.88 8.18 5.30 2.57 11.16 0.00 0.00 0.74 2.57 3.51 0.00 7.96 0.00 0.00 6.17 7.71 7.99 6.94 237.47 0.00 332.48 - 10.45 51.08 1999 0.00 2.63 23.48 21.09 16.39 10.19 5.64 22.58 0.00 0.00 1.34 4.61 6.17 0.00 16.02 0.00 0.00 12.40 15.62 16.54 13.95 150.11 0.00 338.75 - 10.45 51.08 2000 0.00 3.04 33.69 30.95 23.60 14.00 8.28 32.57 0.00 0.00 1.72 5.87 7.83 0.00 22.86 0.00 0.00 17.87 22.53 23.55 20.11 0.00 0.00 268.48 - 10.45 51.08 2001 0.00 3.24 42.44 39.90 29.88 16.93 10.50 41.33 0.00 0.00 1.97 6.67 8.86 0.00 28.85 0.00 0.00 22.69 28.59 29.85 25.52 0.00 0.00 337.22 - 10.45 51.08 2002 0.00 2.83 45.03 43.79 31.86 17.18 11.17 43.97 0.00 0.00 1.88 6.21 8.37 0.00 30.65 0.00 0.00 24.16 30.42 31.91 27.18 0.00 0.00 356.60 - 10.45 51.08 2003 0.00 2.65 51.72 52.76 36.83 18.84 12.86 51.04 0.00 0.00 1.86 5.99 8.91 0.00 33.85 0.00 0.00 28.07 35.32 33.95 31.58 0.00 0.00 406.22 - 10.45 51.08 2004 0.00 2.40 47.84 50.27 35.13 16.81 12.23 48.27 0.00 0.00 1.69 5.39 7.59 0.00 31.74 0.00 0.00 26.69 33.56 33.90 30.03 0.00 0.00 383.54 - 10.45 51.08 2005 0.00 1.99 51.27 56.52 38.00 17.06 13.21 52.36 0.00 0.00 1.66 4.93 7.43 0.00 33.77 0.00 0.00 28.97 36.40 35.93 32.59 0.00 0.00 412.09 - 10.45 51.08 2006 0.00 1.40 52.37 63.44 41.09 17.02 14.22 56.61 0.00 0.00 1.72 4.59 6.93 0.00 34.24 0.00 0.00 31.35 39.35 40.38 35.27 0.00 0.00 439.97 - 10.45 51.08 2007 0.00 1.02 55.13 73.40 43.46 16.05 15.32 63.02 0.00 0.00 1.63 3.63 6.79 0.00 37.23 0.00 0.00 35.75 44.80 42.30 40.22 0.00 0.00 479.74 - 10.45 51.08 2008 0.00 0.29 46.18 66.32 38.43 12.09 13.27 53.87 0.00 0.00 1.16 2.14 5.15 0.00 30.85 0.00 0.00 30.78 37.20 34.52 34.63 0.00 0.00 406.89 - 10.45 51.08 2009 0.00 0.00 43.36 71.38 39.51 10.72 13.78 54.35 0.00 0.00 0.97 0.97 4.66 0.00 30.89 0.00 0.00 31.82 38.44 35.97 34.47 0.00 0.00 411.29 - 10.45 51.08 2010 0.00 0.00 46.29 78.30 42.72 10.23 15.06 58.95 0.00 0.00 0.72 0.63 4.01 0.00 31.14 0.00 0.00 34.51 41.69 36.02 37.38 0.00 0.00 437.64 - 10.45 51.08 2011 0.00 0.00 44.18 84.32 43.74 8.50 15.59 58.89 0.00 0.00 0.00 0.41 3.18 0.00 29.56 0.00 0.00 35.33 42.70 35.02 36.81 0.00 0.00 438.22 - 10.45 51.08 2012 0.00 0.00 39.43 80.36 39.54 6.46 14.28 52.35 0.00 0.00 0.00 0.05 1.88 0.00 24.96 0.00 0.00 32.21 38.93 31.21 33.56 0.00 0.00 395.22 diff --git a/rLPJGUESS/inst/extdata/outputsForTests/run_nyear_spinup/outDirectory/agpp.out b/rLPJGUESS/inst/extdata/outputsForTests/run_nyear_spinup/outDirectory/agpp.out deleted file mode 100644 index 676bbc5..0000000 --- a/rLPJGUESS/inst/extdata/outputsForTests/run_nyear_spinup/outDirectory/agpp.out +++ /dev/null @@ -1,63 +0,0 @@ - Lon Lat Year Abi_alb BES Bet_pen Bet_pub Car_bet Cor_ave Fag_syl Fra_exc Jun_oxy MRS Pic_abi Pic_sit Pin_syl Pin_hal Pop_tre Que_coc Que_ile Que_pub Que_rob Til_cor Ulm_gla C3_gr C4_gr Total - 10.45 51.08 1951 0.000 0.024 0.071 0.075 0.059 0.034 0.013 0.033 0.000 0.000 0.011 0.031 0.026 0.000 0.074 0.000 0.000 0.041 0.064 0.050 0.033 0.303 0.000 0.941 - 10.45 51.08 1952 0.000 0.019 0.095 0.104 0.080 0.041 0.017 0.044 0.000 0.000 0.011 0.031 0.027 0.000 0.095 0.000 0.000 0.055 0.086 0.063 0.044 0.066 0.000 0.878 - 10.45 51.08 1953 0.000 0.021 0.128 0.147 0.112 0.053 0.025 0.062 0.000 0.000 0.014 0.038 0.032 0.000 0.130 0.000 0.000 0.077 0.120 0.090 0.062 0.005 0.000 1.116 - 10.45 51.08 1954 0.000 0.017 0.127 0.156 0.111 0.048 0.025 0.062 0.000 0.000 0.013 0.034 0.030 0.000 0.128 0.000 0.000 0.078 0.120 0.089 0.062 0.000 0.000 1.099 - 10.45 51.08 1955 0.000 0.012 0.120 0.174 0.112 0.044 0.025 0.060 0.000 0.000 0.011 0.027 0.025 0.000 0.126 0.000 0.000 0.079 0.122 0.089 0.063 0.000 0.000 1.090 - 10.45 51.08 1956 0.000 0.011 0.126 0.193 0.120 0.043 0.028 0.065 0.000 0.000 0.011 0.025 0.024 0.000 0.129 0.000 0.000 0.081 0.130 0.091 0.068 0.000 0.000 1.146 - 10.45 51.08 1957 0.000 0.009 0.137 0.227 0.132 0.043 0.031 0.072 0.000 0.000 0.010 0.021 0.023 0.000 0.139 0.000 0.000 0.086 0.144 0.098 0.075 0.000 0.000 1.247 - 10.45 51.08 1958 0.000 0.007 0.137 0.230 0.132 0.038 0.032 0.070 0.000 0.000 0.007 0.017 0.018 0.000 0.133 0.000 0.000 0.088 0.148 0.097 0.077 0.000 0.000 1.230 - 10.45 51.08 1959 0.000 0.005 0.114 0.214 0.113 0.030 0.029 0.062 0.000 0.000 0.006 0.014 0.015 0.000 0.110 0.000 0.000 0.075 0.128 0.077 0.065 0.000 0.000 1.056 - 10.45 51.08 1960 0.000 0.004 0.121 0.254 0.129 0.030 0.034 0.071 0.000 0.000 0.006 0.009 0.015 0.000 0.125 0.000 0.000 0.086 0.146 0.088 0.075 0.000 0.000 1.192 - 10.45 51.08 1961 0.000 0.002 0.119 0.272 0.138 0.028 0.037 0.076 0.000 0.000 0.005 0.007 0.013 0.000 0.122 0.000 0.000 0.092 0.157 0.090 0.080 0.000 0.000 1.239 - 10.45 51.08 1962 0.000 0.001 0.089 0.228 0.104 0.018 0.029 0.056 0.000 0.000 0.004 0.004 0.010 0.000 0.092 0.000 0.000 0.068 0.121 0.069 0.062 0.000 0.000 0.954 - 10.45 51.08 1963 0.000 0.001 0.102 0.282 0.122 0.021 0.036 0.068 0.000 0.000 0.003 0.002 0.010 0.000 0.091 0.000 0.000 0.083 0.143 0.084 0.075 0.000 0.000 1.122 - 10.45 51.08 1964 0.000 0.000 0.082 0.274 0.113 0.014 0.034 0.060 0.000 0.000 0.002 0.001 0.008 0.000 0.083 0.000 0.000 0.077 0.134 0.075 0.070 0.000 0.000 1.028 - 10.45 51.08 1965 0.000 0.000 0.082 0.330 0.124 0.014 0.039 0.068 0.000 0.000 0.002 0.001 0.007 0.000 0.090 0.000 0.000 0.087 0.147 0.080 0.079 0.000 0.000 1.150 - 10.45 51.08 1966 0.000 0.000 0.086 0.392 0.134 0.013 0.045 0.075 0.000 0.000 0.001 0.001 0.006 0.000 0.080 0.000 0.000 0.098 0.160 0.081 0.084 0.000 0.000 1.256 - 10.45 51.08 1967 0.000 0.000 0.071 0.426 0.130 0.010 0.046 0.075 0.000 0.000 0.001 0.000 0.005 0.000 0.073 0.000 0.000 0.096 0.154 0.077 0.083 0.000 0.000 1.247 - 10.45 51.08 1968 0.000 0.000 0.054 0.433 0.122 0.008 0.044 0.070 0.000 0.000 0.000 0.000 0.004 0.000 0.058 0.000 0.000 0.087 0.145 0.069 0.078 0.000 0.000 1.172 - 10.45 51.08 1969 0.000 0.000 0.047 0.459 0.122 0.007 0.045 0.071 0.000 0.000 0.000 0.000 0.002 0.000 0.052 0.000 0.000 0.087 0.145 0.063 0.079 0.000 0.000 1.180 - 10.45 51.08 1970 0.000 0.000 0.042 0.471 0.120 0.006 0.046 0.070 0.000 0.000 0.000 0.000 0.001 0.000 0.043 0.000 0.000 0.086 0.132 0.060 0.078 0.000 0.000 1.155 - 10.45 51.08 1971 0.000 0.000 0.033 0.420 0.099 0.004 0.040 0.059 0.000 0.000 0.000 0.000 0.000 0.000 0.032 0.000 0.000 0.073 0.107 0.045 0.066 0.000 0.000 0.979 - 10.45 51.08 1972 0.000 0.000 0.038 0.525 0.116 0.003 0.048 0.069 0.000 0.000 0.000 0.000 0.000 0.000 0.031 0.000 0.000 0.081 0.122 0.051 0.077 0.000 0.000 1.161 - 10.45 51.08 1973 0.000 0.000 0.027 0.440 0.091 0.002 0.040 0.056 0.000 0.000 0.000 0.000 0.000 0.000 0.023 0.000 0.000 0.062 0.095 0.036 0.062 0.000 0.000 0.933 - 10.45 51.08 1974 0.000 0.000 0.029 0.598 0.109 0.001 0.051 0.070 0.000 0.000 0.000 0.000 0.000 0.000 0.028 0.000 0.000 0.078 0.115 0.046 0.078 0.000 0.000 1.202 - 10.45 51.08 1975 0.000 0.000 0.026 0.578 0.100 0.000 0.048 0.065 0.000 0.000 0.000 0.000 0.000 0.000 0.019 0.000 0.000 0.073 0.107 0.035 0.073 0.000 0.000 1.124 - 10.45 51.08 1976 0.000 0.000 0.014 0.449 0.066 0.000 0.036 0.044 0.000 0.000 0.000 0.000 0.000 0.000 0.011 0.000 0.000 0.052 0.074 0.023 0.049 0.000 0.000 0.818 - 10.45 51.08 1977 0.000 0.000 0.017 0.634 0.087 0.000 0.050 0.056 0.000 0.000 0.000 0.000 0.000 0.000 0.013 0.000 0.000 0.070 0.100 0.031 0.067 0.000 0.000 1.124 - 10.45 51.08 1978 0.000 0.000 0.011 0.642 0.084 0.000 0.050 0.055 0.000 0.000 0.000 0.000 0.000 0.000 0.012 0.000 0.000 0.066 0.095 0.028 0.058 0.000 0.000 1.101 - 10.45 51.08 1979 0.000 0.000 0.010 0.643 0.081 0.000 0.049 0.052 0.000 0.000 0.000 0.000 0.000 0.000 0.010 0.000 0.000 0.059 0.091 0.024 0.056 0.000 0.000 1.075 - 10.45 51.08 1980 0.000 0.000 0.007 0.673 0.077 0.000 0.049 0.050 0.000 0.000 0.000 0.000 0.000 0.000 0.009 0.000 0.000 0.057 0.083 0.020 0.053 0.000 0.000 1.078 - 10.45 51.08 1981 0.000 0.000 0.007 0.771 0.082 0.000 0.054 0.054 0.000 0.000 0.000 0.000 0.000 0.000 0.008 0.000 0.000 0.057 0.083 0.019 0.054 0.000 0.000 1.188 - 10.45 51.08 1982 0.000 0.000 0.004 0.599 0.058 0.000 0.043 0.040 0.000 0.000 0.000 0.000 0.000 0.000 0.003 0.000 0.000 0.042 0.058 0.013 0.040 0.000 0.000 0.899 - 10.45 51.08 1983 0.000 0.000 0.004 0.742 0.073 0.000 0.055 0.050 0.000 0.000 0.000 0.000 0.000 0.000 0.003 0.000 0.000 0.050 0.073 0.015 0.050 0.000 0.000 1.114 - 10.45 51.08 1984 0.000 0.000 0.003 0.702 0.061 0.000 0.049 0.044 0.000 0.000 0.000 0.000 0.000 0.000 0.002 0.000 0.000 0.044 0.064 0.013 0.044 0.000 0.000 1.024 - 10.45 51.08 1985 0.000 0.000 0.003 0.792 0.062 0.000 0.055 0.047 0.000 0.000 0.000 0.000 0.000 0.000 0.001 0.000 0.000 0.044 0.066 0.012 0.047 0.000 0.000 1.128 - 10.45 51.08 1986 0.000 0.000 0.003 0.817 0.063 0.000 0.057 0.041 0.000 0.000 0.000 0.000 0.000 0.000 0.001 0.000 0.000 0.041 0.067 0.012 0.048 0.000 0.000 1.152 - 10.45 51.08 1987 0.000 0.000 0.003 0.816 0.058 0.000 0.056 0.039 0.000 0.000 0.000 0.000 0.000 0.000 0.001 0.000 0.000 0.039 0.059 0.011 0.045 0.000 0.000 1.127 - 10.45 51.08 1988 0.000 0.000 0.003 0.801 0.058 0.000 0.059 0.039 0.000 0.000 0.000 0.000 0.000 0.000 0.001 0.000 0.000 0.039 0.060 0.011 0.045 0.000 0.000 1.115 - 10.45 51.08 1989 0.000 0.000 0.002 0.775 0.050 0.000 0.055 0.035 0.000 0.000 0.000 0.000 0.000 0.000 0.001 0.000 0.000 0.035 0.054 0.009 0.041 0.000 0.000 1.058 - 10.45 51.08 1990 0.000 0.000 0.002 0.915 0.055 0.000 0.064 0.036 0.000 0.000 0.000 0.000 0.000 0.000 0.001 0.000 0.000 0.039 0.060 0.010 0.045 0.000 0.000 1.226 - 10.45 51.08 1991 0.000 0.000 0.001 0.765 0.042 0.000 0.049 0.027 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.030 0.045 0.007 0.034 0.000 0.000 1.001 - 10.45 51.08 1992 0.000 0.000 0.001 0.815 0.039 0.000 0.055 0.029 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.031 0.045 0.007 0.036 0.000 0.000 1.058 - 10.45 51.08 1993 0.000 0.000 0.001 0.934 0.042 0.000 0.062 0.032 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.032 0.051 0.008 0.040 0.000 0.000 1.201 - 10.45 51.08 1994 0.000 0.000 0.001 0.996 0.042 0.000 0.064 0.032 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.032 0.048 0.006 0.040 0.000 0.000 1.260 - 10.45 51.08 1995 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1996 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1997 0.000 0.013 0.040 0.040 0.028 0.016 0.009 0.038 0.000 0.000 0.004 0.016 0.018 0.000 0.027 0.000 0.000 0.021 0.027 0.028 0.024 0.551 0.000 0.900 - 10.45 51.08 1998 0.000 0.016 0.072 0.075 0.051 0.028 0.016 0.070 0.000 0.000 0.006 0.023 0.026 0.000 0.049 0.000 0.000 0.038 0.048 0.050 0.043 0.257 0.000 0.869 - 10.45 51.08 1999 0.000 0.017 0.114 0.115 0.080 0.041 0.027 0.110 0.000 0.000 0.009 0.031 0.033 0.000 0.077 0.000 0.000 0.061 0.076 0.080 0.068 0.095 0.000 1.035 - 10.45 51.08 2000 0.000 0.015 0.139 0.146 0.099 0.046 0.034 0.136 0.000 0.000 0.009 0.032 0.035 0.000 0.093 0.000 0.000 0.075 0.094 0.097 0.084 0.010 0.000 1.145 - 10.45 51.08 2001 0.000 0.011 0.151 0.172 0.109 0.046 0.037 0.151 0.000 0.000 0.008 0.027 0.030 0.000 0.102 0.000 0.000 0.083 0.105 0.106 0.094 0.000 0.000 1.233 - 10.45 51.08 2002 0.000 0.008 0.150 0.190 0.110 0.042 0.038 0.152 0.000 0.000 0.007 0.022 0.027 0.000 0.100 0.000 0.000 0.084 0.106 0.106 0.095 0.000 0.000 1.239 - 10.45 51.08 2003 0.000 0.008 0.151 0.199 0.113 0.037 0.039 0.156 0.000 0.000 0.007 0.020 0.026 0.000 0.098 0.000 0.000 0.087 0.109 0.101 0.098 0.000 0.000 1.248 - 10.45 51.08 2004 0.000 0.005 0.147 0.214 0.115 0.034 0.040 0.158 0.000 0.000 0.005 0.014 0.019 0.000 0.094 0.000 0.000 0.088 0.110 0.104 0.099 0.000 0.000 1.247 - 10.45 51.08 2005 0.000 0.004 0.150 0.237 0.120 0.031 0.043 0.167 0.000 0.000 0.005 0.012 0.017 0.000 0.094 0.000 0.000 0.093 0.116 0.106 0.104 0.000 0.000 1.299 - 10.45 51.08 2006 0.000 0.002 0.143 0.252 0.123 0.027 0.044 0.170 0.000 0.000 0.004 0.008 0.015 0.000 0.089 0.000 0.000 0.095 0.119 0.110 0.107 0.000 0.000 1.307 - 10.45 51.08 2007 0.000 0.002 0.149 0.303 0.129 0.024 0.049 0.192 0.000 0.000 0.004 0.007 0.015 0.000 0.097 0.000 0.000 0.110 0.137 0.115 0.123 0.000 0.000 1.455 - 10.45 51.08 2008 0.000 0.000 0.117 0.277 0.108 0.017 0.042 0.157 0.000 0.000 0.003 0.003 0.010 0.000 0.076 0.000 0.000 0.089 0.108 0.090 0.101 0.000 0.000 1.199 - 10.45 51.08 2009 0.000 0.000 0.110 0.305 0.112 0.014 0.044 0.159 0.000 0.000 0.002 0.001 0.009 0.000 0.075 0.000 0.000 0.093 0.112 0.093 0.101 0.000 0.000 1.233 - 10.45 51.08 2010 0.000 0.000 0.112 0.344 0.117 0.013 0.047 0.167 0.000 0.000 0.001 0.001 0.007 0.000 0.072 0.000 0.000 0.098 0.118 0.089 0.106 0.000 0.000 1.290 - 10.45 51.08 2011 0.000 0.000 0.105 0.372 0.118 0.010 0.049 0.165 0.000 0.000 0.000 0.001 0.005 0.000 0.067 0.000 0.000 0.099 0.120 0.086 0.103 0.000 0.000 1.299 - 10.45 51.08 2012 0.000 0.000 0.090 0.364 0.104 0.007 0.044 0.144 0.000 0.000 0.000 0.000 0.003 0.000 0.053 0.000 0.000 0.088 0.107 0.070 0.092 0.000 0.000 1.166 diff --git a/rLPJGUESS/inst/extdata/outputsForTests/run_nyear_spinup/outDirectory/aiso.out b/rLPJGUESS/inst/extdata/outputsForTests/run_nyear_spinup/outDirectory/aiso.out deleted file mode 100644 index 7d6e828..0000000 --- a/rLPJGUESS/inst/extdata/outputsForTests/run_nyear_spinup/outDirectory/aiso.out +++ /dev/null @@ -1,63 +0,0 @@ - Lon Lat Year Abi_alb BES Bet_pen Bet_pub Car_bet Cor_ave Fag_syl Fra_exc Jun_oxy MRS Pic_abi Pic_sit Pin_syl Pin_hal Pop_tre Que_coc Que_ile Que_pub Que_rob Til_cor Ulm_gla C3_gr C4_gr Total - 10.45 51.08 1951 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1952 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1953 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1954 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1955 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1956 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1957 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1958 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1959 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1960 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1961 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1962 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1963 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1964 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1965 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1966 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1967 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1968 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1969 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1970 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1971 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1972 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1973 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1974 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1975 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1976 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1977 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1978 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1979 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1980 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1981 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1982 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1983 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1984 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1985 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1986 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1987 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1988 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1989 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1990 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1991 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1992 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1993 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1994 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1995 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1996 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1997 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1998 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1999 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 2000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 2001 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 2002 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 2003 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 2004 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 2005 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 2006 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 2007 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 2008 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 2009 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 2010 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 2011 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 2012 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 diff --git a/rLPJGUESS/inst/extdata/outputsForTests/run_nyear_spinup/outDirectory/amon.out b/rLPJGUESS/inst/extdata/outputsForTests/run_nyear_spinup/outDirectory/amon.out deleted file mode 100644 index 7d6e828..0000000 --- a/rLPJGUESS/inst/extdata/outputsForTests/run_nyear_spinup/outDirectory/amon.out +++ /dev/null @@ -1,63 +0,0 @@ - Lon Lat Year Abi_alb BES Bet_pen Bet_pub Car_bet Cor_ave Fag_syl Fra_exc Jun_oxy MRS Pic_abi Pic_sit Pin_syl Pin_hal Pop_tre Que_coc Que_ile Que_pub Que_rob Til_cor Ulm_gla C3_gr C4_gr Total - 10.45 51.08 1951 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1952 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1953 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1954 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1955 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1956 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1957 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1958 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1959 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1960 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1961 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1962 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1963 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1964 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1965 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1966 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1967 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1968 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1969 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1970 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1971 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1972 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1973 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1974 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1975 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1976 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1977 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1978 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1979 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1980 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1981 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1982 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1983 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1984 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1985 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1986 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1987 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1988 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1989 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1990 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1991 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1992 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1993 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1994 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1995 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1996 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1997 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1998 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1999 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 2000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 2001 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 2002 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 2003 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 2004 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 2005 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 2006 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 2007 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 2008 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 2009 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 2010 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 2011 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 2012 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 diff --git a/rLPJGUESS/inst/extdata/outputsForTests/run_nyear_spinup/outDirectory/anpp.out b/rLPJGUESS/inst/extdata/outputsForTests/run_nyear_spinup/outDirectory/anpp.out deleted file mode 100644 index fbcba1d..0000000 --- a/rLPJGUESS/inst/extdata/outputsForTests/run_nyear_spinup/outDirectory/anpp.out +++ /dev/null @@ -1,63 +0,0 @@ - Lon Lat Year Abi_alb BES Bet_pen Bet_pub Car_bet Cor_ave Fag_syl Fra_exc Jun_oxy MRS Pic_abi Pic_sit Pin_syl Pin_hal Pop_tre Que_coc Que_ile Que_pub Que_rob Til_cor Ulm_gla C3_gr C4_gr Total - 10.45 51.08 1951 0.000 0.015 0.049 0.052 0.041 0.023 0.009 0.023 0.000 0.000 0.007 0.020 0.017 0.000 0.051 0.000 0.000 0.028 0.044 0.034 0.023 0.119 0.000 0.552 - 10.45 51.08 1952 0.000 0.010 0.063 0.069 0.053 0.027 0.012 0.029 0.000 0.000 0.007 0.018 0.016 0.000 0.062 0.000 0.000 0.037 0.057 0.041 0.029 -0.017 0.000 0.513 - 10.45 51.08 1953 0.000 0.011 0.083 0.096 0.072 0.033 0.016 0.040 0.000 0.000 0.008 0.021 0.019 0.000 0.084 0.000 0.000 0.050 0.078 0.058 0.040 -0.003 0.000 0.707 - 10.45 51.08 1954 0.000 0.008 0.078 0.098 0.069 0.028 0.015 0.038 0.000 0.000 0.007 0.018 0.016 0.000 0.079 0.000 0.000 0.048 0.074 0.055 0.038 0.000 0.000 0.670 - 10.45 51.08 1955 0.000 0.005 0.072 0.108 0.067 0.025 0.015 0.036 0.000 0.000 0.005 0.012 0.013 0.000 0.075 0.000 0.000 0.047 0.073 0.053 0.038 0.000 0.000 0.645 - 10.45 51.08 1956 0.000 0.004 0.075 0.119 0.072 0.024 0.016 0.039 0.000 0.000 0.005 0.011 0.012 0.000 0.077 0.000 0.000 0.048 0.078 0.054 0.040 0.000 0.000 0.677 - 10.45 51.08 1957 0.000 0.003 0.079 0.138 0.077 0.023 0.018 0.042 0.000 0.000 0.004 0.009 0.011 0.000 0.080 0.000 0.000 0.050 0.084 0.056 0.044 0.000 0.000 0.716 - 10.45 51.08 1958 0.000 0.002 0.077 0.136 0.074 0.019 0.018 0.039 0.000 0.000 0.003 0.006 0.008 0.000 0.074 0.000 0.000 0.050 0.083 0.054 0.044 0.000 0.000 0.687 - 10.45 51.08 1959 0.000 0.001 0.057 0.115 0.057 0.013 0.014 0.031 0.000 0.000 0.002 0.004 0.005 0.000 0.054 0.000 0.000 0.038 0.065 0.037 0.033 0.000 0.000 0.526 - 10.45 51.08 1960 0.000 0.001 0.067 0.149 0.072 0.015 0.019 0.040 0.000 0.000 0.002 0.003 0.007 0.000 0.069 0.000 0.000 0.048 0.081 0.048 0.042 0.000 0.000 0.662 - 10.45 51.08 1961 0.000 0.001 0.066 0.160 0.077 0.013 0.021 0.043 0.000 0.000 0.002 0.002 0.006 0.000 0.067 0.000 0.000 0.052 0.088 0.049 0.045 0.000 0.000 0.691 - 10.45 51.08 1962 0.000 0.000 0.045 0.128 0.053 0.007 0.015 0.029 0.000 0.000 0.001 0.001 0.004 0.000 0.046 0.000 0.000 0.035 0.062 0.034 0.032 0.000 0.000 0.494 - 10.45 51.08 1963 0.000 0.000 0.056 0.164 0.067 0.010 0.020 0.037 0.000 0.000 0.001 0.001 0.004 0.000 0.049 0.000 0.000 0.045 0.079 0.045 0.041 0.000 0.000 0.619 - 10.45 51.08 1964 0.000 0.000 0.042 0.150 0.057 0.006 0.017 0.031 0.000 0.000 0.001 0.000 0.003 0.000 0.042 0.000 0.000 0.040 0.069 0.037 0.036 0.000 0.000 0.530 - 10.45 51.08 1965 0.000 0.000 0.047 0.199 0.071 0.007 0.022 0.039 0.000 0.000 0.001 0.000 0.004 0.000 0.051 0.000 0.000 0.050 0.084 0.045 0.045 0.000 0.000 0.665 - 10.45 51.08 1966 0.000 0.000 0.048 0.235 0.076 0.007 0.026 0.043 0.000 0.000 0.000 0.000 0.003 0.000 0.045 0.000 0.000 0.055 0.091 0.046 0.048 0.000 0.000 0.722 - 10.45 51.08 1967 0.000 0.000 0.038 0.249 0.070 0.004 0.025 0.040 0.000 0.000 0.000 0.000 0.002 0.000 0.039 0.000 0.000 0.052 0.083 0.041 0.045 0.000 0.000 0.690 - 10.45 51.08 1968 0.000 0.000 0.028 0.249 0.064 0.003 0.024 0.037 0.000 0.000 0.000 0.000 0.001 0.000 0.030 0.000 0.000 0.046 0.077 0.035 0.042 0.000 0.000 0.637 - 10.45 51.08 1969 0.000 0.000 0.024 0.263 0.064 0.003 0.024 0.038 0.000 0.000 0.000 0.000 0.001 0.000 0.027 0.000 0.000 0.046 0.077 0.032 0.042 0.000 0.000 0.640 - 10.45 51.08 1970 0.000 0.000 0.022 0.270 0.063 0.002 0.025 0.037 0.000 0.000 0.000 0.000 0.000 0.000 0.022 0.000 0.000 0.046 0.070 0.030 0.042 0.000 0.000 0.630 - 10.45 51.08 1971 0.000 0.000 0.015 0.215 0.044 0.001 0.019 0.027 0.000 0.000 0.000 0.000 0.000 0.000 0.014 0.000 0.000 0.033 0.049 0.019 0.030 0.000 0.000 0.465 - 10.45 51.08 1972 0.000 0.000 0.020 0.310 0.063 0.001 0.026 0.038 0.000 0.000 0.000 0.000 0.000 0.000 0.016 0.000 0.000 0.044 0.066 0.027 0.042 0.000 0.000 0.653 - 10.45 51.08 1973 0.000 0.000 0.012 0.228 0.042 0.001 0.019 0.026 0.000 0.000 0.000 0.000 0.000 0.000 0.010 0.000 0.000 0.029 0.044 0.015 0.029 0.000 0.000 0.455 - 10.45 51.08 1974 0.000 0.000 0.016 0.350 0.059 0.001 0.028 0.038 0.000 0.000 0.000 0.000 0.000 0.000 0.015 0.000 0.000 0.042 0.062 0.024 0.042 0.000 0.000 0.677 - 10.45 51.08 1975 0.000 0.000 0.013 0.318 0.051 0.000 0.024 0.033 0.000 0.000 0.000 0.000 0.000 0.000 0.009 0.000 0.000 0.037 0.055 0.017 0.037 0.000 0.000 0.593 - 10.45 51.08 1976 0.000 0.000 0.005 0.203 0.025 0.000 0.014 0.017 0.000 0.000 0.000 0.000 0.000 0.000 0.004 0.000 0.000 0.020 0.028 0.007 0.019 0.000 0.000 0.343 - 10.45 51.08 1977 0.000 0.000 0.009 0.361 0.046 0.000 0.027 0.030 0.000 0.000 0.000 0.000 0.000 0.000 0.007 0.000 0.000 0.037 0.053 0.016 0.036 0.000 0.000 0.622 - 10.45 51.08 1978 0.000 0.000 0.006 0.372 0.046 0.000 0.028 0.030 0.000 0.000 0.000 0.000 0.000 0.000 0.006 0.000 0.000 0.036 0.052 0.015 0.032 0.000 0.000 0.622 - 10.45 51.08 1979 0.000 0.000 0.005 0.360 0.043 0.000 0.026 0.028 0.000 0.000 0.000 0.000 0.000 0.000 0.005 0.000 0.000 0.031 0.048 0.013 0.029 0.000 0.000 0.588 - 10.45 51.08 1980 0.000 0.000 0.003 0.379 0.040 0.000 0.026 0.026 0.000 0.000 0.000 0.000 0.000 0.000 0.004 0.000 0.000 0.030 0.044 0.010 0.028 0.000 0.000 0.591 - 10.45 51.08 1981 0.000 0.000 0.004 0.434 0.043 0.000 0.028 0.028 0.000 0.000 0.000 0.000 0.000 0.000 0.004 0.000 0.000 0.030 0.043 0.010 0.028 0.000 0.000 0.652 - 10.45 51.08 1982 0.000 0.000 0.001 0.263 0.021 0.000 0.017 0.015 0.000 0.000 0.000 0.000 0.000 0.000 0.001 0.000 0.000 0.016 0.022 0.004 0.015 0.000 0.000 0.376 - 10.45 51.08 1983 0.000 0.000 0.002 0.392 0.036 0.000 0.027 0.025 0.000 0.000 0.000 0.000 0.000 0.000 0.001 0.000 0.000 0.025 0.036 0.007 0.025 0.000 0.000 0.576 - 10.45 51.08 1984 0.000 0.000 0.001 0.383 0.031 0.000 0.025 0.022 0.000 0.000 0.000 0.000 0.000 0.000 0.001 0.000 0.000 0.022 0.033 0.006 0.022 0.000 0.000 0.548 - 10.45 51.08 1985 0.000 0.000 0.002 0.438 0.032 0.000 0.029 0.024 0.000 0.000 0.000 0.000 0.000 0.000 0.001 0.000 0.000 0.023 0.034 0.006 0.024 0.000 0.000 0.614 - 10.45 51.08 1986 0.000 0.000 0.002 0.450 0.033 0.000 0.030 0.022 0.000 0.000 0.000 0.000 0.000 0.000 0.001 0.000 0.000 0.022 0.035 0.006 0.025 0.000 0.000 0.624 - 10.45 51.08 1987 0.000 0.000 0.001 0.460 0.030 0.000 0.030 0.020 0.000 0.000 0.000 0.000 0.000 0.000 0.001 0.000 0.000 0.020 0.031 0.005 0.023 0.000 0.000 0.622 - 10.45 51.08 1988 0.000 0.000 0.001 0.420 0.028 0.000 0.030 0.019 0.000 0.000 0.000 0.000 0.000 0.000 0.001 0.000 0.000 0.019 0.029 0.005 0.022 0.000 0.000 0.574 - 10.45 51.08 1989 0.000 0.000 0.001 0.378 0.022 0.000 0.025 0.016 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.016 0.024 0.004 0.018 0.000 0.000 0.505 - 10.45 51.08 1990 0.000 0.000 0.001 0.486 0.027 0.000 0.032 0.018 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.019 0.030 0.005 0.022 0.000 0.000 0.640 - 10.45 51.08 1991 0.000 0.000 0.000 0.364 0.017 0.000 0.021 0.011 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.012 0.019 0.003 0.014 0.000 0.000 0.462 - 10.45 51.08 1992 0.000 0.000 0.000 0.401 0.017 0.000 0.025 0.013 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.014 0.020 0.003 0.016 0.000 0.000 0.510 - 10.45 51.08 1993 0.000 0.000 0.001 0.507 0.022 0.000 0.032 0.017 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.017 0.026 0.004 0.021 0.000 0.000 0.645 - 10.45 51.08 1994 0.000 0.000 0.001 0.518 0.020 0.000 0.031 0.016 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.016 0.023 0.003 0.019 0.000 0.000 0.648 - 10.45 51.08 1995 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1996 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1997 0.000 0.009 0.028 0.028 0.020 0.011 0.006 0.027 0.000 0.000 0.003 0.011 0.012 0.000 0.019 0.000 0.000 0.015 0.019 0.020 0.017 0.301 0.000 0.543 - 10.45 51.08 1998 0.000 0.010 0.050 0.052 0.035 0.019 0.011 0.048 0.000 0.000 0.004 0.015 0.017 0.000 0.034 0.000 0.000 0.027 0.033 0.034 0.030 0.040 0.000 0.458 - 10.45 51.08 1999 0.000 0.010 0.076 0.078 0.054 0.027 0.018 0.074 0.000 0.000 0.005 0.018 0.021 0.000 0.052 0.000 0.000 0.041 0.051 0.054 0.046 0.017 0.000 0.643 - 10.45 51.08 2000 0.000 0.008 0.089 0.095 0.064 0.029 0.022 0.088 0.000 0.000 0.005 0.018 0.020 0.000 0.060 0.000 0.000 0.048 0.061 0.062 0.054 -0.007 0.000 0.716 - 10.45 51.08 2001 0.000 0.004 0.094 0.109 0.068 0.027 0.023 0.094 0.000 0.000 0.004 0.013 0.016 0.000 0.063 0.000 0.000 0.052 0.065 0.066 0.058 0.000 0.000 0.757 - 10.45 51.08 2002 0.000 0.003 0.088 0.117 0.065 0.023 0.022 0.090 0.000 0.000 0.003 0.009 0.013 0.000 0.059 0.000 0.000 0.050 0.063 0.062 0.056 0.000 0.000 0.725 - 10.45 51.08 2003 0.000 0.002 0.084 0.115 0.063 0.019 0.022 0.087 0.000 0.000 0.003 0.008 0.012 0.000 0.054 0.000 0.000 0.048 0.061 0.054 0.054 0.000 0.000 0.686 - 10.45 51.08 2004 0.000 0.001 0.082 0.125 0.064 0.017 0.022 0.088 0.000 0.000 0.002 0.004 0.008 0.000 0.052 0.000 0.000 0.049 0.061 0.057 0.055 0.000 0.000 0.688 - 10.45 51.08 2005 0.000 0.001 0.082 0.138 0.066 0.014 0.024 0.092 0.000 0.000 0.002 0.004 0.007 0.000 0.051 0.000 0.000 0.051 0.064 0.057 0.058 0.000 0.000 0.710 - 10.45 51.08 2006 0.000 0.000 0.075 0.141 0.065 0.012 0.023 0.090 0.000 0.000 0.001 0.002 0.005 0.000 0.047 0.000 0.000 0.050 0.063 0.057 0.056 0.000 0.000 0.687 - 10.45 51.08 2007 0.000 0.001 0.082 0.178 0.071 0.011 0.027 0.108 0.000 0.000 0.002 0.003 0.007 0.000 0.053 0.000 0.000 0.062 0.077 0.062 0.069 0.000 0.000 0.813 - 10.45 51.08 2008 0.000 0.000 0.058 0.151 0.054 0.006 0.021 0.078 0.000 0.000 0.001 0.001 0.003 0.000 0.037 0.000 0.000 0.045 0.054 0.043 0.050 0.000 0.000 0.602 - 10.45 51.08 2009 0.000 0.000 0.056 0.168 0.057 0.005 0.022 0.080 0.000 0.000 0.001 0.000 0.003 0.000 0.038 0.000 0.000 0.047 0.057 0.046 0.051 0.000 0.000 0.631 - 10.45 51.08 2010 0.000 0.000 0.060 0.202 0.063 0.006 0.025 0.091 0.000 0.000 0.000 0.000 0.002 0.000 0.038 0.000 0.000 0.053 0.064 0.047 0.057 0.000 0.000 0.709 - 10.45 51.08 2011 0.000 0.000 0.053 0.208 0.060 0.004 0.025 0.085 0.000 0.000 0.000 0.000 0.002 0.000 0.034 0.000 0.000 0.051 0.062 0.042 0.053 0.000 0.000 0.678 - 10.45 51.08 2012 0.000 0.000 0.042 0.194 0.049 0.002 0.021 0.069 0.000 0.000 0.000 0.000 0.001 0.000 0.025 0.000 0.000 0.042 0.051 0.032 0.044 0.000 0.000 0.571 diff --git a/rLPJGUESS/inst/extdata/outputsForTests/run_nyear_spinup/outDirectory/cflux.out b/rLPJGUESS/inst/extdata/outputsForTests/run_nyear_spinup/outDirectory/cflux.out deleted file mode 100644 index b61bee3..0000000 --- a/rLPJGUESS/inst/extdata/outputsForTests/run_nyear_spinup/outDirectory/cflux.out +++ /dev/null @@ -1,63 +0,0 @@ - Lon Lat Year Veg Repr Soil Fire Est NEE - 10.45 51.08 1951 -0.552 0.055 0.731 0.069 -0.001 0.30259 - 10.45 51.08 1952 -0.513 0.053 0.704 0.100 0.000 0.34366 - 10.45 51.08 1953 -0.707 0.071 0.802 0.073 0.000 0.23875 - 10.45 51.08 1954 -0.670 0.067 0.587 0.058 0.000 0.04152 - 10.45 51.08 1955 -0.645 0.064 0.549 0.023 0.000 -0.00810 - 10.45 51.08 1956 -0.677 0.068 0.521 0.011 0.000 -0.07698 - 10.45 51.08 1957 -0.716 0.072 0.681 0.046 0.000 0.08269 - 10.45 51.08 1958 -0.687 0.069 0.647 0.026 0.000 0.05587 - 10.45 51.08 1959 -0.526 0.053 0.750 0.096 0.000 0.37264 - 10.45 51.08 1960 -0.662 0.066 0.633 0.077 0.000 0.11489 - 10.45 51.08 1961 -0.691 0.069 0.679 0.080 0.000 0.13666 - 10.45 51.08 1962 -0.494 0.049 0.587 0.132 0.000 0.27426 - 10.45 51.08 1963 -0.619 0.062 0.603 0.062 0.000 0.10786 - 10.45 51.08 1964 -0.530 0.053 0.639 0.073 0.000 0.23562 - 10.45 51.08 1965 -0.665 0.066 0.526 0.059 0.000 -0.01310 - 10.45 51.08 1966 -0.722 0.072 0.542 0.027 0.000 -0.08131 - 10.45 51.08 1967 -0.690 0.069 0.609 0.049 0.000 0.03738 - 10.45 51.08 1968 -0.637 0.064 0.581 0.062 0.000 0.07010 - 10.45 51.08 1969 -0.640 0.064 0.517 0.041 0.000 -0.01870 - 10.45 51.08 1970 -0.630 0.063 0.519 0.045 0.000 -0.00346 - 10.45 51.08 1971 -0.465 0.046 0.605 0.059 0.000 0.24594 - 10.45 51.08 1972 -0.653 0.065 0.444 0.007 0.000 -0.13690 - 10.45 51.08 1973 -0.455 0.046 0.575 0.057 0.000 0.22225 - 10.45 51.08 1974 -0.677 0.068 0.503 0.013 0.000 -0.09374 - 10.45 51.08 1975 -0.593 0.059 0.578 0.050 0.000 0.09429 - 10.45 51.08 1976 -0.343 0.034 0.562 0.055 0.000 0.30902 - 10.45 51.08 1977 -0.622 0.062 0.408 0.023 0.000 -0.12830 - 10.45 51.08 1978 -0.622 0.062 0.491 0.039 0.000 -0.02985 - 10.45 51.08 1979 -0.588 0.059 0.489 0.039 0.000 -0.00149 - 10.45 51.08 1980 -0.591 0.059 0.473 0.048 0.000 -0.01177 - 10.45 51.08 1981 -0.652 0.065 0.426 0.006 0.000 -0.15490 - 10.45 51.08 1982 -0.376 0.038 0.574 0.050 0.000 0.28491 - 10.45 51.08 1983 -0.576 0.058 0.516 0.048 0.000 0.04490 - 10.45 51.08 1984 -0.548 0.055 0.355 0.005 0.000 -0.13210 - 10.45 51.08 1985 -0.614 0.061 0.501 0.049 0.000 -0.00232 - 10.45 51.08 1986 -0.624 0.062 0.436 0.028 0.000 -0.09723 - 10.45 51.08 1987 -0.622 0.062 0.349 0.005 0.000 -0.20567 - 10.45 51.08 1988 -0.574 0.057 0.526 0.048 0.000 0.05726 - 10.45 51.08 1989 -0.505 0.050 0.514 0.042 0.000 0.10188 - 10.45 51.08 1990 -0.640 0.064 0.485 0.040 0.000 -0.05038 - 10.45 51.08 1991 -0.462 0.046 0.468 0.045 0.000 0.09773 - 10.45 51.08 1992 -0.510 0.051 0.469 0.036 0.000 0.04527 - 10.45 51.08 1993 -0.645 0.064 0.368 0.018 0.000 -0.19406 - 10.45 51.08 1994 -0.648 0.065 0.425 0.004 0.000 -0.15328 - 10.45 51.08 1995 0.000 -0.000 0.676 0.010 0.000 0.68691 - 10.45 51.08 1996 0.000 -0.000 0.397 0.010 -0.419 -0.01248 - 10.45 51.08 1997 -0.543 0.054 0.590 0.080 -0.002 0.17989 - 10.45 51.08 1998 -0.458 0.046 0.668 0.075 -0.002 0.32927 - 10.45 51.08 1999 -0.643 0.064 0.733 0.041 -0.000 0.19513 - 10.45 51.08 2000 -0.716 0.072 0.663 0.063 0.000 0.08302 - 10.45 51.08 2001 -0.757 0.076 0.578 0.036 0.000 -0.06692 - 10.45 51.08 2002 -0.725 0.072 0.502 0.008 0.000 -0.14286 - 10.45 51.08 2003 -0.686 0.069 0.714 0.062 0.000 0.15811 - 10.45 51.08 2004 -0.688 0.069 0.625 0.060 0.000 0.06594 - 10.45 51.08 2005 -0.710 0.071 0.675 0.057 0.000 0.09295 - 10.45 51.08 2006 -0.687 0.069 0.692 0.052 0.000 0.12583 - 10.45 51.08 2007 -0.813 0.081 0.587 0.029 0.000 -0.11554 - 10.45 51.08 2008 -0.602 0.060 0.650 0.052 0.000 0.16114 - 10.45 51.08 2009 -0.631 0.063 0.625 0.045 0.000 0.10237 - 10.45 51.08 2010 -0.709 0.071 0.509 0.029 0.000 -0.09960 - 10.45 51.08 2011 -0.678 0.068 0.669 0.056 0.000 0.11450 - 10.45 51.08 2012 -0.571 0.057 0.626 0.047 0.000 0.15856 diff --git a/rLPJGUESS/inst/extdata/outputsForTests/run_nyear_spinup/outDirectory/clitter.out b/rLPJGUESS/inst/extdata/outputsForTests/run_nyear_spinup/outDirectory/clitter.out deleted file mode 100644 index 4d8d2a9..0000000 --- a/rLPJGUESS/inst/extdata/outputsForTests/run_nyear_spinup/outDirectory/clitter.out +++ /dev/null @@ -1,63 +0,0 @@ - Lon Lat Year Abi_alb BES Bet_pen Bet_pub Car_bet Cor_ave Fag_syl Fra_exc Jun_oxy MRS Pic_abi Pic_sit Pin_syl Pin_hal Pop_tre Que_coc Que_ile Que_pub Que_rob Til_cor Ulm_gla C3_gr C4_gr Total - 10.45 51.08 1951 0.000 0.004 0.010 0.010 0.008 0.006 0.002 0.005 0.000 0.000 0.002 0.006 0.004 0.000 0.010 0.000 0.000 0.006 0.009 0.007 0.005 0.180 0.000 0.273 - 10.45 51.08 1952 0.000 0.004 0.019 0.020 0.014 0.007 0.003 0.008 0.000 0.000 0.003 0.009 0.007 0.000 0.020 0.000 0.000 0.010 0.015 0.012 0.008 0.122 0.000 0.280 - 10.45 51.08 1953 0.000 0.005 0.023 0.024 0.020 0.010 0.004 0.011 0.000 0.000 0.004 0.011 0.008 0.000 0.024 0.000 0.000 0.014 0.022 0.017 0.011 0.011 0.000 0.217 - 10.45 51.08 1954 0.000 0.005 0.040 0.032 0.027 0.013 0.006 0.020 0.000 0.000 0.004 0.012 0.009 0.000 0.031 0.000 0.000 0.019 0.029 0.022 0.015 0.000 0.000 0.284 - 10.45 51.08 1955 0.000 0.006 0.034 0.039 0.031 0.014 0.007 0.017 0.000 0.000 0.005 0.013 0.010 0.000 0.041 0.000 0.000 0.027 0.034 0.030 0.017 0.000 0.000 0.324 - 10.45 51.08 1956 0.000 0.005 0.036 0.054 0.034 0.014 0.008 0.018 0.000 0.000 0.005 0.012 0.010 0.000 0.038 0.000 0.000 0.029 0.037 0.027 0.019 0.000 0.000 0.346 - 10.45 51.08 1957 0.000 0.006 0.038 0.061 0.044 0.015 0.009 0.027 0.000 0.000 0.006 0.011 0.009 0.000 0.052 0.000 0.000 0.024 0.040 0.035 0.021 0.000 0.000 0.399 - 10.45 51.08 1958 0.000 0.010 0.055 0.054 0.047 0.015 0.009 0.020 0.000 0.000 0.004 0.010 0.011 0.000 0.040 0.000 0.000 0.034 0.051 0.030 0.030 0.000 0.000 0.420 - 10.45 51.08 1959 0.000 0.009 0.055 0.074 0.040 0.018 0.010 0.021 0.000 0.000 0.004 0.013 0.008 0.000 0.041 0.000 0.000 0.026 0.044 0.038 0.022 0.000 0.000 0.423 - 10.45 51.08 1960 0.000 0.006 0.055 0.096 0.042 0.017 0.011 0.022 0.000 0.000 0.003 0.007 0.008 0.000 0.057 0.000 0.000 0.027 0.047 0.030 0.024 0.000 0.000 0.450 - 10.45 51.08 1961 0.000 0.003 0.044 0.079 0.050 0.011 0.011 0.032 0.000 0.000 0.003 0.006 0.006 0.000 0.037 0.000 0.000 0.036 0.045 0.029 0.023 0.000 0.000 0.415 - 10.45 51.08 1962 0.000 0.004 0.044 0.063 0.050 0.012 0.012 0.022 0.000 0.000 0.003 0.004 0.007 0.000 0.096 0.000 0.000 0.027 0.057 0.029 0.024 0.000 0.000 0.454 - 10.45 51.08 1963 0.000 0.007 0.071 0.067 0.040 0.024 0.012 0.032 0.000 0.000 0.002 0.001 0.005 0.000 0.031 0.000 0.000 0.027 0.046 0.029 0.024 0.000 0.000 0.418 - 10.45 51.08 1964 0.000 0.000 0.058 0.096 0.050 0.011 0.012 0.020 0.000 0.000 0.001 0.002 0.005 0.000 0.030 0.000 0.000 0.026 0.058 0.045 0.024 0.000 0.000 0.437 - 10.45 51.08 1965 0.000 0.000 0.036 0.071 0.050 0.010 0.012 0.021 0.000 0.000 0.001 0.001 0.003 0.000 0.085 0.000 0.000 0.027 0.057 0.044 0.036 0.000 0.000 0.453 - 10.45 51.08 1966 0.000 0.000 0.057 0.076 0.038 0.009 0.012 0.021 0.000 0.000 0.001 0.000 0.003 0.000 0.034 0.000 0.000 0.027 0.057 0.024 0.023 0.000 0.000 0.382 - 10.45 51.08 1967 0.000 0.000 0.068 0.085 0.040 0.005 0.013 0.022 0.000 0.000 0.009 0.000 0.002 0.000 0.054 0.000 0.000 0.042 0.045 0.025 0.025 0.000 0.000 0.436 - 10.45 51.08 1968 0.000 0.000 0.042 0.093 0.040 0.008 0.014 0.023 0.000 0.000 0.000 0.001 0.002 0.000 0.031 0.000 0.000 0.028 0.047 0.036 0.025 0.000 0.000 0.390 - 10.45 51.08 1969 0.000 0.000 0.029 0.148 0.041 0.007 0.014 0.023 0.000 0.000 0.000 0.001 0.003 0.000 0.052 0.000 0.000 0.028 0.092 0.024 0.026 0.000 0.000 0.487 - 10.45 51.08 1970 0.000 0.000 0.015 0.103 0.040 0.006 0.015 0.023 0.000 0.000 0.000 0.001 0.030 0.000 0.027 0.000 0.000 0.028 0.059 0.034 0.026 0.000 0.000 0.407 - 10.45 51.08 1971 0.000 0.000 0.014 0.163 0.040 0.016 0.015 0.023 0.000 0.000 0.000 0.000 0.000 0.000 0.047 0.000 0.000 0.044 0.057 0.032 0.026 0.000 0.000 0.477 - 10.45 51.08 1972 0.000 0.000 0.026 0.109 0.054 0.005 0.015 0.023 0.000 0.000 0.000 0.000 0.000 0.000 0.012 0.000 0.000 0.043 0.056 0.030 0.025 0.000 0.000 0.398 - 10.45 51.08 1973 0.000 0.000 0.037 0.112 0.052 0.001 0.015 0.022 0.000 0.000 0.000 0.000 0.000 0.000 0.011 0.000 0.000 0.024 0.054 0.017 0.024 0.000 0.000 0.368 - 10.45 51.08 1974 0.000 0.000 0.010 0.115 0.034 0.007 0.015 0.021 0.000 0.000 0.000 0.000 0.000 0.000 0.054 0.000 0.000 0.024 0.035 0.037 0.024 0.000 0.000 0.377 - 10.45 51.08 1975 0.000 0.000 0.035 0.122 0.066 0.029 0.015 0.039 0.000 0.000 0.000 0.000 0.000 0.000 0.018 0.000 0.000 0.024 0.053 0.025 0.041 0.000 0.000 0.467 - 10.45 51.08 1976 0.000 0.000 0.033 0.128 0.047 0.000 0.016 0.037 0.000 0.000 0.000 0.000 0.000 0.000 0.028 0.000 0.000 0.024 0.033 0.013 0.022 0.000 0.000 0.381 - 10.45 51.08 1977 0.000 0.000 0.045 0.216 0.028 0.000 0.015 0.018 0.000 0.000 0.000 0.000 0.000 0.000 0.005 0.000 0.000 0.040 0.050 0.022 0.057 0.000 0.000 0.496 - 10.45 51.08 1978 0.000 0.000 0.004 0.125 0.027 0.000 0.015 0.017 0.000 0.000 0.000 0.000 0.000 0.000 0.015 0.000 0.000 0.039 0.029 0.021 0.018 0.000 0.000 0.308 - 10.45 51.08 1979 0.000 0.000 0.030 0.133 0.027 0.000 0.015 0.017 0.000 0.000 0.000 0.000 0.000 0.000 0.004 0.000 0.000 0.019 0.049 0.020 0.018 0.000 0.000 0.333 - 10.45 51.08 1980 0.000 0.000 0.002 0.139 0.027 0.000 0.016 0.017 0.000 0.000 0.000 0.000 0.000 0.000 0.015 0.000 0.000 0.039 0.067 0.030 0.038 0.000 0.000 0.390 - 10.45 51.08 1981 0.000 0.000 0.016 0.146 0.044 0.000 0.016 0.017 0.000 0.000 0.000 0.000 0.000 0.000 0.038 0.000 0.000 0.018 0.046 0.007 0.017 0.000 0.000 0.364 - 10.45 51.08 1982 0.000 0.000 0.015 0.275 0.025 0.000 0.016 0.017 0.000 0.000 0.000 0.000 0.000 0.000 0.025 0.000 0.000 0.038 0.025 0.018 0.017 0.000 0.000 0.470 - 10.45 51.08 1983 0.000 0.000 0.001 0.150 0.042 0.000 0.016 0.016 0.000 0.000 0.000 0.013 0.000 0.000 0.001 0.000 0.000 0.016 0.023 0.006 0.016 0.000 0.000 0.300 - 10.45 51.08 1984 0.000 0.000 0.001 0.152 0.040 0.000 0.016 0.015 0.000 0.000 0.000 0.000 0.000 0.000 0.012 0.000 0.000 0.036 0.043 0.016 0.015 0.000 0.000 0.348 - 10.45 51.08 1985 0.000 0.000 0.001 0.297 0.020 0.000 0.016 0.057 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.035 0.020 0.004 0.015 0.000 0.000 0.465 - 10.45 51.08 1986 0.000 0.000 0.001 0.312 0.020 0.000 0.017 0.013 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.013 0.043 0.004 0.015 0.000 0.000 0.439 - 10.45 51.08 1987 0.000 0.000 0.001 0.320 0.020 0.000 0.017 0.013 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.013 0.020 0.004 0.015 0.000 0.000 0.422 - 10.45 51.08 1988 0.000 0.000 0.001 0.155 0.039 0.000 0.017 0.013 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.013 0.019 0.004 0.014 0.000 0.000 0.275 - 10.45 51.08 1989 0.000 0.000 0.015 0.161 0.018 0.000 0.018 0.035 0.000 0.000 0.000 0.000 0.000 0.000 0.012 0.000 0.000 0.012 0.019 0.004 0.014 0.000 0.000 0.310 - 10.45 51.08 1990 0.000 0.000 0.001 0.166 0.018 0.000 0.018 0.011 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.012 0.019 0.015 0.014 0.000 0.000 0.273 - 10.45 51.08 1991 0.000 0.000 0.001 0.170 0.057 0.000 0.018 0.011 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.012 0.041 0.003 0.014 0.000 0.000 0.326 - 10.45 51.08 1992 0.000 0.000 0.000 0.172 0.035 0.000 0.018 0.010 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.034 0.016 0.003 0.013 0.000 0.000 0.302 - 10.45 51.08 1993 0.000 0.000 0.000 0.168 0.013 0.000 0.017 0.010 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.010 0.039 0.026 0.012 0.000 0.000 0.294 - 10.45 51.08 1994 0.000 0.000 0.029 5.594 0.425 0.000 0.327 0.295 0.000 0.000 0.000 0.000 0.000 0.000 0.012 0.000 0.000 0.295 0.443 0.106 0.369 0.000 0.000 7.896 - 10.45 51.08 1995 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1996 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.001 - 10.45 51.08 1997 0.000 0.001 0.005 0.004 0.003 0.002 0.001 0.005 0.000 0.000 0.001 0.003 0.003 0.000 0.003 0.000 0.000 0.003 0.003 0.004 0.003 0.222 0.000 0.266 - 10.45 51.08 1998 0.000 0.002 0.010 0.013 0.007 0.004 0.002 0.009 0.000 0.000 0.001 0.005 0.005 0.000 0.007 0.000 0.000 0.005 0.007 0.007 0.006 0.260 0.000 0.350 - 10.45 51.08 1999 0.000 0.003 0.017 0.016 0.012 0.006 0.004 0.016 0.000 0.000 0.002 0.007 0.007 0.000 0.012 0.000 0.000 0.009 0.011 0.012 0.010 0.082 0.000 0.226 - 10.45 51.08 2000 0.000 0.004 0.026 0.025 0.018 0.009 0.006 0.025 0.000 0.000 0.002 0.009 0.009 0.000 0.018 0.000 0.000 0.014 0.017 0.018 0.016 0.029 0.000 0.245 - 10.45 51.08 2001 0.000 0.005 0.034 0.033 0.024 0.011 0.009 0.033 0.000 0.000 0.003 0.011 0.010 0.000 0.023 0.000 0.000 0.018 0.023 0.024 0.021 0.000 0.000 0.282 - 10.45 51.08 2002 0.000 0.005 0.040 0.041 0.029 0.013 0.010 0.040 0.000 0.000 0.003 0.010 0.011 0.000 0.027 0.000 0.000 0.022 0.028 0.029 0.025 0.000 0.000 0.331 - 10.45 51.08 2003 0.000 0.003 0.049 0.057 0.032 0.013 0.011 0.044 0.000 0.000 0.003 0.010 0.010 0.000 0.035 0.000 0.000 0.024 0.031 0.031 0.027 0.000 0.000 0.382 - 10.45 51.08 2004 0.000 0.007 0.044 0.051 0.034 0.013 0.012 0.048 0.000 0.000 0.003 0.010 0.010 0.000 0.029 0.000 0.000 0.026 0.033 0.033 0.030 0.000 0.000 0.384 - 10.45 51.08 2005 0.000 0.008 0.061 0.056 0.036 0.013 0.013 0.050 0.000 0.000 0.003 0.008 0.011 0.000 0.045 0.000 0.000 0.028 0.035 0.034 0.031 0.000 0.000 0.430 - 10.45 51.08 2006 0.000 0.004 0.061 0.060 0.046 0.019 0.014 0.061 0.000 0.000 0.002 0.006 0.009 0.000 0.028 0.000 0.000 0.029 0.036 0.035 0.032 0.000 0.000 0.442 - 10.45 51.08 2007 0.000 0.006 0.051 0.064 0.037 0.014 0.014 0.052 0.000 0.000 0.002 0.005 0.007 0.000 0.028 0.000 0.000 0.029 0.047 0.035 0.033 0.000 0.000 0.425 - 10.45 51.08 2008 0.000 0.001 0.070 0.070 0.038 0.012 0.016 0.067 0.000 0.000 0.002 0.003 0.006 0.000 0.037 0.000 0.000 0.031 0.038 0.044 0.045 0.000 0.000 0.481 - 10.45 51.08 2009 0.000 0.003 0.038 0.098 0.038 0.007 0.015 0.053 0.000 0.000 0.001 0.003 0.008 0.000 0.036 0.000 0.000 0.031 0.038 0.043 0.034 0.000 0.000 0.447 - 10.45 51.08 2010 0.000 0.000 0.057 0.075 0.037 0.016 0.015 0.064 0.000 0.000 0.001 0.001 0.004 0.000 0.034 0.000 0.000 0.031 0.037 0.031 0.045 0.000 0.000 0.446 - 10.45 51.08 2011 0.000 0.000 0.034 0.081 0.037 0.008 0.015 0.064 0.000 0.000 0.006 0.002 0.003 0.000 0.042 0.000 0.000 0.031 0.037 0.049 0.032 0.000 0.000 0.440 - 10.45 51.08 2012 0.000 0.000 0.087 0.121 0.038 0.017 0.016 0.052 0.000 0.000 0.000 0.003 0.002 0.000 0.050 0.000 0.000 0.032 0.038 0.047 0.033 0.000 0.000 0.536 diff --git a/rLPJGUESS/inst/extdata/outputsForTests/run_nyear_spinup/outDirectory/cmass.out b/rLPJGUESS/inst/extdata/outputsForTests/run_nyear_spinup/outDirectory/cmass.out deleted file mode 100644 index 2eec833..0000000 --- a/rLPJGUESS/inst/extdata/outputsForTests/run_nyear_spinup/outDirectory/cmass.out +++ /dev/null @@ -1,63 +0,0 @@ - Lon Lat Year Abi_alb BES Bet_pen Bet_pub Car_bet Cor_ave Fag_syl Fra_exc Jun_oxy MRS Pic_abi Pic_sit Pin_syl Pin_hal Pop_tre Que_coc Que_ile Que_pub Que_rob Til_cor Ulm_gla C3_gr C4_gr Total - 10.45 51.08 1951 0.000 0.030 0.071 0.073 0.059 0.035 0.013 0.033 0.000 0.000 0.011 0.031 0.027 0.000 0.073 0.000 0.000 0.041 0.063 0.049 0.033 0.152 0.000 0.791 - 10.45 51.08 1952 0.000 0.035 0.108 0.115 0.092 0.051 0.020 0.051 0.000 0.000 0.014 0.038 0.035 0.000 0.109 0.000 0.000 0.064 0.099 0.074 0.051 0.014 0.000 0.970 - 10.45 51.08 1953 0.000 0.040 0.160 0.178 0.137 0.071 0.030 0.076 0.000 0.000 0.017 0.046 0.044 0.000 0.161 0.000 0.000 0.095 0.147 0.110 0.076 0.000 0.000 1.389 - 10.45 51.08 1954 0.000 0.042 0.190 0.234 0.172 0.084 0.037 0.091 0.000 0.000 0.019 0.050 0.049 0.000 0.201 0.000 0.000 0.119 0.185 0.137 0.096 0.000 0.000 1.708 - 10.45 51.08 1955 0.000 0.039 0.222 0.293 0.201 0.093 0.044 0.107 0.000 0.000 0.020 0.049 0.051 0.000 0.228 0.000 0.000 0.134 0.216 0.154 0.112 0.000 0.000 1.963 - 10.45 51.08 1956 0.000 0.039 0.253 0.346 0.231 0.101 0.051 0.124 0.000 0.000 0.020 0.047 0.052 0.000 0.260 0.000 0.000 0.149 0.249 0.176 0.130 0.000 0.000 2.226 - 10.45 51.08 1957 0.000 0.035 0.286 0.409 0.256 0.107 0.058 0.134 0.000 0.000 0.018 0.044 0.052 0.000 0.279 0.000 0.000 0.169 0.284 0.192 0.148 0.000 0.000 2.471 - 10.45 51.08 1958 0.000 0.026 0.300 0.477 0.276 0.109 0.065 0.149 0.000 0.000 0.016 0.039 0.048 0.000 0.306 0.000 0.000 0.181 0.308 0.211 0.157 0.000 0.000 2.668 - 10.45 51.08 1959 0.000 0.018 0.297 0.506 0.287 0.103 0.068 0.156 0.000 0.000 0.015 0.029 0.044 0.000 0.314 0.000 0.000 0.189 0.322 0.206 0.164 0.000 0.000 2.717 - 10.45 51.08 1960 0.000 0.013 0.302 0.544 0.310 0.099 0.074 0.169 0.000 0.000 0.013 0.025 0.043 0.000 0.319 0.000 0.000 0.205 0.349 0.219 0.178 0.000 0.000 2.862 - 10.45 51.08 1961 0.000 0.010 0.317 0.609 0.329 0.100 0.082 0.176 0.000 0.000 0.012 0.021 0.041 0.000 0.342 0.000 0.000 0.215 0.382 0.234 0.195 0.000 0.000 3.067 - 10.45 51.08 1962 0.000 0.007 0.314 0.660 0.327 0.094 0.084 0.180 0.000 0.000 0.010 0.018 0.038 0.000 0.288 0.000 0.000 0.220 0.381 0.236 0.200 0.000 0.000 3.055 - 10.45 51.08 1963 0.000 0.000 0.292 0.740 0.347 0.079 0.090 0.181 0.000 0.000 0.010 0.018 0.036 0.000 0.302 0.000 0.000 0.234 0.405 0.247 0.213 0.000 0.000 3.194 - 10.45 51.08 1964 0.000 0.000 0.272 0.779 0.349 0.074 0.094 0.188 0.000 0.000 0.009 0.016 0.034 0.000 0.310 0.000 0.000 0.243 0.409 0.236 0.221 0.000 0.000 3.232 - 10.45 51.08 1965 0.000 0.000 0.278 0.887 0.362 0.071 0.102 0.202 0.000 0.000 0.009 0.016 0.034 0.000 0.271 0.000 0.000 0.261 0.427 0.232 0.225 0.000 0.000 3.376 - 10.45 51.08 1966 0.000 0.000 0.264 1.022 0.393 0.068 0.113 0.219 0.000 0.000 0.009 0.015 0.033 0.000 0.278 0.000 0.000 0.284 0.451 0.249 0.245 0.000 0.000 3.643 - 10.45 51.08 1967 0.000 0.000 0.229 1.161 0.416 0.067 0.122 0.234 0.000 0.000 0.000 0.015 0.033 0.000 0.258 0.000 0.000 0.289 0.481 0.261 0.261 0.000 0.000 3.827 - 10.45 51.08 1968 0.000 0.000 0.212 1.291 0.433 0.063 0.129 0.244 0.000 0.000 0.000 0.014 0.032 0.000 0.253 0.000 0.000 0.302 0.503 0.256 0.273 0.000 0.000 4.008 - 10.45 51.08 1969 0.000 0.000 0.206 1.379 0.451 0.058 0.137 0.255 0.000 0.000 0.000 0.014 0.030 0.000 0.226 0.000 0.000 0.315 0.480 0.261 0.285 0.000 0.000 4.097 - 10.45 51.08 1970 0.000 0.000 0.211 1.520 0.467 0.054 0.144 0.266 0.000 0.000 0.000 0.013 0.000 0.000 0.218 0.000 0.000 0.328 0.484 0.254 0.297 0.000 0.000 4.256 - 10.45 51.08 1971 0.000 0.000 0.209 1.549 0.467 0.040 0.146 0.267 0.000 0.000 0.000 0.013 0.000 0.000 0.184 0.000 0.000 0.314 0.471 0.239 0.298 0.000 0.000 4.196 - 10.45 51.08 1972 0.000 0.000 0.201 1.719 0.469 0.036 0.154 0.278 0.000 0.000 0.000 0.013 0.000 0.000 0.187 0.000 0.000 0.311 0.474 0.233 0.311 0.000 0.000 4.386 - 10.45 51.08 1973 0.000 0.000 0.175 1.811 0.455 0.036 0.156 0.280 0.000 0.000 0.000 0.013 0.000 0.000 0.185 0.000 0.000 0.313 0.461 0.230 0.313 0.000 0.000 4.426 - 10.45 51.08 1974 0.000 0.000 0.180 2.010 0.474 0.029 0.166 0.292 0.000 0.000 0.000 0.013 0.000 0.000 0.145 0.000 0.000 0.327 0.482 0.214 0.327 0.000 0.000 4.659 - 10.45 51.08 1975 0.000 0.000 0.156 2.174 0.453 0.000 0.172 0.283 0.000 0.000 0.000 0.013 0.000 0.000 0.134 0.000 0.000 0.337 0.478 0.205 0.319 0.000 0.000 4.724 - 10.45 51.08 1976 0.000 0.000 0.127 2.229 0.428 0.000 0.170 0.261 0.000 0.000 0.000 0.013 0.000 0.000 0.110 0.000 0.000 0.331 0.470 0.199 0.313 0.000 0.000 4.651 - 10.45 51.08 1977 0.000 0.000 0.091 2.338 0.441 0.000 0.178 0.270 0.000 0.000 0.000 0.013 0.000 0.000 0.111 0.000 0.000 0.324 0.468 0.191 0.288 0.000 0.000 4.714 - 10.45 51.08 1978 0.000 0.000 0.092 2.547 0.456 0.000 0.188 0.280 0.000 0.000 0.000 0.013 0.000 0.000 0.101 0.000 0.000 0.318 0.486 0.184 0.299 0.000 0.000 4.965 - 10.45 51.08 1979 0.000 0.000 0.067 2.738 0.467 0.000 0.196 0.288 0.000 0.000 0.000 0.013 0.000 0.000 0.102 0.000 0.000 0.326 0.480 0.175 0.307 0.000 0.000 5.160 - 10.45 51.08 1980 0.000 0.000 0.067 2.939 0.476 0.000 0.204 0.295 0.000 0.000 0.000 0.013 0.000 0.000 0.092 0.000 0.000 0.314 0.452 0.154 0.295 0.000 0.000 5.301 - 10.45 51.08 1981 0.000 0.000 0.055 3.183 0.471 0.000 0.214 0.303 0.000 0.000 0.000 0.013 0.000 0.000 0.058 0.000 0.000 0.323 0.445 0.156 0.303 0.000 0.000 5.524 - 10.45 51.08 1982 0.000 0.000 0.041 3.145 0.464 0.000 0.212 0.300 0.000 0.000 0.000 0.013 0.000 0.000 0.034 0.000 0.000 0.300 0.440 0.142 0.300 0.000 0.000 5.391 - 10.45 51.08 1983 0.000 0.000 0.041 3.347 0.454 0.000 0.221 0.306 0.000 0.000 0.000 0.000 0.000 0.000 0.034 0.000 0.000 0.306 0.449 0.143 0.306 0.000 0.000 5.608 - 10.45 51.08 1984 0.000 0.000 0.041 3.539 0.442 0.000 0.227 0.311 0.000 0.000 0.000 0.000 0.000 0.000 0.023 0.000 0.000 0.290 0.435 0.133 0.311 0.000 0.000 5.752 - 10.45 51.08 1985 0.000 0.000 0.041 3.636 0.451 0.000 0.237 0.276 0.000 0.000 0.000 0.000 0.000 0.000 0.023 0.000 0.000 0.276 0.446 0.134 0.318 0.000 0.000 5.839 - 10.45 51.08 1986 0.000 0.000 0.042 3.728 0.460 0.000 0.247 0.282 0.000 0.000 0.000 0.000 0.000 0.000 0.023 0.000 0.000 0.282 0.434 0.135 0.326 0.000 0.000 5.961 - 10.45 51.08 1987 0.000 0.000 0.042 3.822 0.468 0.000 0.257 0.288 0.000 0.000 0.000 0.000 0.000 0.000 0.023 0.000 0.000 0.288 0.443 0.136 0.332 0.000 0.000 6.098 - 10.45 51.08 1988 0.000 0.000 0.042 4.045 0.454 0.000 0.266 0.292 0.000 0.000 0.000 0.000 0.000 0.000 0.024 0.000 0.000 0.292 0.449 0.137 0.337 0.000 0.000 6.339 - 10.45 51.08 1989 0.000 0.000 0.028 4.223 0.455 0.000 0.271 0.271 0.000 0.000 0.000 0.000 0.000 0.000 0.012 0.000 0.000 0.294 0.452 0.137 0.339 0.000 0.000 6.482 - 10.45 51.08 1990 0.000 0.000 0.028 4.494 0.462 0.000 0.282 0.276 0.000 0.000 0.000 0.000 0.000 0.000 0.012 0.000 0.000 0.299 0.460 0.126 0.345 0.000 0.000 6.784 - 10.45 51.08 1991 0.000 0.000 0.028 4.651 0.420 0.000 0.282 0.275 0.000 0.000 0.000 0.000 0.000 0.000 0.012 0.000 0.000 0.298 0.435 0.125 0.344 0.000 0.000 6.871 - 10.45 51.08 1992 0.000 0.000 0.028 4.840 0.401 0.000 0.287 0.276 0.000 0.000 0.000 0.000 0.000 0.000 0.012 0.000 0.000 0.276 0.437 0.125 0.345 0.000 0.000 7.028 - 10.45 51.08 1993 0.000 0.000 0.028 5.128 0.407 0.000 0.298 0.281 0.000 0.000 0.000 0.000 0.000 0.000 0.012 0.000 0.000 0.281 0.422 0.103 0.352 0.000 0.000 7.313 - 10.45 51.08 1994 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1995 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1996 0.000 0.008 0.015 0.014 0.011 0.007 0.003 0.014 0.000 0.000 0.002 0.008 0.009 0.000 0.011 0.000 0.000 0.008 0.010 0.011 0.009 0.278 0.000 0.419 - 10.45 51.08 1997 0.000 0.014 0.036 0.035 0.025 0.016 0.008 0.034 0.000 0.000 0.004 0.015 0.018 0.000 0.024 0.000 0.000 0.019 0.023 0.025 0.021 0.326 0.000 0.643 - 10.45 51.08 1998 0.000 0.021 0.071 0.068 0.049 0.029 0.016 0.068 0.000 0.000 0.007 0.024 0.028 0.000 0.048 0.000 0.000 0.037 0.047 0.049 0.042 0.102 0.000 0.706 - 10.45 51.08 1999 0.000 0.027 0.122 0.123 0.086 0.047 0.029 0.118 0.000 0.000 0.009 0.034 0.040 0.000 0.083 0.000 0.000 0.065 0.082 0.085 0.073 0.036 0.000 1.059 - 10.45 51.08 2000 0.000 0.031 0.177 0.184 0.125 0.064 0.042 0.171 0.000 0.000 0.012 0.040 0.049 0.000 0.119 0.000 0.000 0.095 0.119 0.122 0.106 0.000 0.000 1.457 - 10.45 51.08 2001 0.000 0.030 0.228 0.249 0.162 0.078 0.054 0.223 0.000 0.000 0.012 0.041 0.053 0.000 0.154 0.000 0.000 0.123 0.154 0.158 0.138 0.000 0.000 1.856 - 10.45 51.08 2002 0.000 0.027 0.268 0.314 0.191 0.086 0.064 0.264 0.000 0.000 0.012 0.039 0.054 0.000 0.180 0.000 0.000 0.146 0.183 0.185 0.164 0.000 0.000 2.177 - 10.45 51.08 2003 0.000 0.026 0.294 0.360 0.216 0.089 0.072 0.298 0.000 0.000 0.012 0.037 0.054 0.000 0.193 0.000 0.000 0.165 0.207 0.202 0.186 0.000 0.000 2.412 - 10.45 51.08 2004 0.000 0.020 0.323 0.422 0.238 0.092 0.080 0.329 0.000 0.000 0.011 0.031 0.051 0.000 0.210 0.000 0.000 0.183 0.229 0.221 0.206 0.000 0.000 2.645 - 10.45 51.08 2005 0.000 0.013 0.335 0.490 0.262 0.092 0.088 0.362 0.000 0.000 0.010 0.026 0.046 0.000 0.211 0.000 0.000 0.201 0.252 0.238 0.226 0.000 0.000 2.853 - 10.45 51.08 2006 0.000 0.009 0.342 0.557 0.274 0.083 0.095 0.382 0.000 0.000 0.008 0.021 0.041 0.000 0.226 0.000 0.000 0.218 0.272 0.255 0.245 0.000 0.000 3.028 - 10.45 51.08 2007 0.000 0.004 0.364 0.652 0.300 0.079 0.105 0.428 0.000 0.000 0.008 0.019 0.041 0.000 0.246 0.000 0.000 0.244 0.295 0.276 0.274 0.000 0.000 3.334 - 10.45 51.08 2008 0.000 0.003 0.346 0.718 0.310 0.072 0.108 0.431 0.000 0.000 0.007 0.016 0.038 0.000 0.242 0.000 0.000 0.253 0.305 0.269 0.274 0.000 0.000 3.392 - 10.45 51.08 2009 0.000 0.000 0.358 0.770 0.322 0.070 0.113 0.450 0.000 0.000 0.006 0.014 0.033 0.000 0.240 0.000 0.000 0.264 0.318 0.268 0.285 0.000 0.000 3.511 - 10.45 51.08 2010 0.000 0.000 0.355 0.876 0.342 0.059 0.121 0.468 0.000 0.000 0.006 0.013 0.031 0.000 0.241 0.000 0.000 0.281 0.339 0.279 0.292 0.000 0.000 3.702 - 10.45 51.08 2011 0.000 0.000 0.369 0.983 0.358 0.055 0.128 0.480 0.000 0.000 0.000 0.012 0.030 0.000 0.229 0.000 0.000 0.295 0.357 0.267 0.308 0.000 0.000 3.870 - 10.45 51.08 2012 0.000 0.000 0.320 1.036 0.363 0.039 0.131 0.490 0.000 0.000 0.000 0.009 0.029 0.000 0.201 0.000 0.000 0.301 0.364 0.248 0.314 0.000 0.000 3.846 diff --git a/rLPJGUESS/inst/extdata/outputsForTests/run_nyear_spinup/outDirectory/cpool.out b/rLPJGUESS/inst/extdata/outputsForTests/run_nyear_spinup/outDirectory/cpool.out deleted file mode 100644 index 7116554..0000000 --- a/rLPJGUESS/inst/extdata/outputsForTests/run_nyear_spinup/outDirectory/cpool.out +++ /dev/null @@ -1,63 +0,0 @@ - Lon Lat Year VegC LitterC SoilC Total - 10.45 51.08 1951 0.791 14.488 12.818 28.098 - 10.45 51.08 1952 0.970 13.870 12.913 27.754 - 10.45 51.08 1953 1.389 13.131 12.996 27.515 - 10.45 51.08 1954 1.708 12.717 13.049 27.474 - 10.45 51.08 1955 1.963 12.408 13.111 27.482 - 10.45 51.08 1956 2.226 12.155 13.178 27.559 - 10.45 51.08 1957 2.471 11.764 13.241 27.476 - 10.45 51.08 1958 2.668 11.449 13.303 27.420 - 10.45 51.08 1959 2.717 10.974 13.357 27.048 - 10.45 51.08 1960 2.862 10.659 13.412 26.933 - 10.45 51.08 1961 3.067 10.265 13.464 26.796 - 10.45 51.08 1962 3.055 9.958 13.509 26.522 - 10.45 51.08 1963 3.194 9.669 13.551 26.414 - 10.45 51.08 1964 3.232 9.365 13.581 26.178 - 10.45 51.08 1965 3.376 9.200 13.616 26.191 - 10.45 51.08 1966 3.643 8.980 13.649 26.273 - 10.45 51.08 1967 3.827 8.745 13.664 26.235 - 10.45 51.08 1968 4.008 8.475 13.682 26.165 - 10.45 51.08 1969 4.097 8.381 13.706 26.184 - 10.45 51.08 1970 4.256 8.197 13.735 26.187 - 10.45 51.08 1971 4.196 8.005 13.741 25.941 - 10.45 51.08 1972 4.386 7.923 13.769 26.078 - 10.45 51.08 1973 4.426 7.652 13.778 25.856 - 10.45 51.08 1974 4.659 7.507 13.784 25.950 - 10.45 51.08 1975 4.724 7.358 13.773 25.855 - 10.45 51.08 1976 4.651 7.134 13.762 25.546 - 10.45 51.08 1977 4.714 7.186 13.775 25.675 - 10.45 51.08 1978 4.965 6.961 13.779 25.705 - 10.45 51.08 1979 5.160 6.780 13.766 25.706 - 10.45 51.08 1980 5.301 6.662 13.755 25.718 - 10.45 51.08 1981 5.524 6.595 13.754 25.873 - 10.45 51.08 1982 5.391 6.476 13.720 25.588 - 10.45 51.08 1983 5.608 6.236 13.698 25.543 - 10.45 51.08 1984 5.752 6.219 13.704 25.675 - 10.45 51.08 1985 5.839 6.156 13.683 25.677 - 10.45 51.08 1986 5.961 6.146 13.668 25.775 - 10.45 51.08 1987 6.098 6.206 13.677 25.980 - 10.45 51.08 1988 6.339 5.933 13.651 25.923 - 10.45 51.08 1989 6.482 5.725 13.614 25.821 - 10.45 51.08 1990 6.784 5.505 13.583 25.872 - 10.45 51.08 1991 6.871 5.350 13.552 25.774 - 10.45 51.08 1992 7.028 5.181 13.520 25.729 - 10.45 51.08 1993 7.313 5.098 13.511 25.923 - 10.45 51.08 1994 0.000 12.592 13.484 26.076 - 10.45 51.08 1995 0.000 11.785 13.604 25.389 - 10.45 51.08 1996 0.419 11.372 13.611 25.401 - 10.45 51.08 1997 0.643 10.975 13.604 25.222 - 10.45 51.08 1998 0.706 10.526 13.660 24.892 - 10.45 51.08 1999 1.059 9.916 13.722 24.697 - 10.45 51.08 2000 1.457 9.421 13.736 24.614 - 10.45 51.08 2001 1.856 9.074 13.752 24.681 - 10.45 51.08 2002 2.177 8.869 13.778 24.824 - 10.45 51.08 2003 2.412 8.465 13.790 24.666 - 10.45 51.08 2004 2.645 8.143 13.812 24.600 - 10.45 51.08 2005 2.853 7.829 13.825 24.507 - 10.45 51.08 2006 3.028 7.520 13.834 24.381 - 10.45 51.08 2007 3.334 7.307 13.856 24.497 - 10.45 51.08 2008 3.392 7.081 13.863 24.335 - 10.45 51.08 2009 3.511 6.848 13.874 24.233 - 10.45 51.08 2010 3.702 6.729 13.902 24.333 - 10.45 51.08 2011 3.870 6.456 13.892 24.218 - 10.45 51.08 2012 3.846 6.334 13.880 24.060 diff --git a/rLPJGUESS/inst/extdata/outputsForTests/run_nyear_spinup/outDirectory/cton_leaf.out b/rLPJGUESS/inst/extdata/outputsForTests/run_nyear_spinup/outDirectory/cton_leaf.out deleted file mode 100644 index 0648de4..0000000 --- a/rLPJGUESS/inst/extdata/outputsForTests/run_nyear_spinup/outDirectory/cton_leaf.out +++ /dev/null @@ -1,63 +0,0 @@ - Lon Lat Year Abi_alb BES Bet_pen Bet_pub Car_bet Cor_ave Fag_syl Fra_exc Jun_oxy MRS Pic_abi Pic_sit Pin_syl Pin_hal Pop_tre Que_coc Que_ile Que_pub Que_rob Til_cor Ulm_gla C3_gr C4_gr Total - 10.45 51.08 1951 0.0 37.3 23.6 23.6 23.6 23.6 23.6 23.6 0.0 0.0 56.4 60.8 50.7 0.0 23.6 0.0 0.0 23.6 23.6 23.6 23.6 23.6 0.0 25.6 - 10.45 51.08 1952 0.0 37.3 23.6 23.6 23.6 23.6 23.6 23.6 0.0 0.0 56.4 60.8 50.7 0.0 23.6 0.0 0.0 23.6 23.6 23.6 23.6 23.6 0.0 26.3 - 10.45 51.08 1953 0.0 37.3 23.6 23.6 23.6 23.6 23.6 23.6 0.0 0.0 56.4 60.8 50.7 0.0 23.6 0.0 0.0 23.6 23.6 23.6 23.6 0.0 0.0 26.1 - 10.45 51.08 1954 0.0 37.3 23.6 23.6 23.6 23.6 23.6 23.6 0.0 0.0 56.4 60.8 50.7 0.0 23.6 0.0 0.0 23.6 23.6 23.6 23.6 0.0 0.0 25.9 - 10.45 51.08 1955 0.0 37.3 23.6 23.6 23.6 23.6 23.6 23.6 0.0 0.0 56.4 60.8 50.7 0.0 23.6 0.0 0.0 23.6 23.6 23.6 23.6 0.0 0.0 25.6 - 10.45 51.08 1956 0.0 37.3 23.6 23.6 23.6 23.6 23.6 23.6 0.0 0.0 56.4 60.8 50.7 0.0 23.6 0.0 0.0 23.6 23.6 23.6 23.6 0.0 0.0 25.4 - 10.45 51.08 1957 0.0 37.3 23.6 23.6 23.6 23.6 23.6 23.6 0.0 0.0 56.4 60.8 50.7 0.0 23.6 0.0 0.0 23.6 23.6 23.6 23.6 0.0 0.0 25.2 - 10.45 51.08 1958 0.0 37.3 23.6 23.6 23.6 23.6 23.6 23.6 0.0 0.0 56.4 60.8 50.7 0.0 23.6 0.0 0.0 23.6 23.6 23.6 23.6 0.0 0.0 24.9 - 10.45 51.08 1959 0.0 37.3 23.6 23.6 23.6 23.6 23.6 23.6 0.0 0.0 56.4 60.8 50.7 0.0 23.6 0.0 0.0 23.6 23.6 23.6 23.6 0.0 0.0 24.6 - 10.45 51.08 1960 0.0 37.3 23.6 23.6 23.6 23.6 23.6 23.6 0.0 0.0 56.4 60.8 50.7 0.0 23.6 0.0 0.0 23.6 23.6 23.6 23.6 0.0 0.0 24.4 - 10.45 51.08 1961 0.0 37.3 23.6 23.6 23.6 23.6 23.6 23.6 0.0 0.0 56.4 60.8 50.7 0.0 23.6 0.0 0.0 23.6 23.6 23.6 23.6 0.0 0.0 24.3 - 10.45 51.08 1962 0.0 37.3 23.6 23.6 23.6 23.6 23.6 23.6 0.0 0.0 56.4 60.8 50.7 0.0 23.6 0.0 0.0 23.6 23.6 23.6 23.6 0.0 0.0 24.1 - 10.45 51.08 1963 0.0 37.3 23.6 23.6 23.6 23.6 23.6 23.6 0.0 0.0 56.4 60.8 50.7 0.0 23.6 0.0 0.0 23.6 23.6 23.6 23.6 0.0 0.0 24.0 - 10.45 51.08 1964 0.0 0.0 23.6 23.6 23.6 23.6 23.6 23.6 0.0 0.0 56.4 60.8 50.7 0.0 23.6 0.0 0.0 23.6 23.6 23.6 23.6 0.0 0.0 23.9 - 10.45 51.08 1965 0.0 0.0 23.6 23.6 23.6 23.6 23.6 23.6 0.0 0.0 56.4 60.8 50.7 0.0 23.6 0.0 0.0 23.6 23.6 23.6 23.6 0.0 0.0 23.9 - 10.45 51.08 1966 0.0 0.0 23.6 23.6 23.6 23.6 23.6 23.6 0.0 0.0 56.4 60.8 50.7 0.0 23.6 0.0 0.0 23.6 23.6 23.6 23.6 0.0 0.0 23.8 - 10.45 51.08 1967 0.0 0.0 23.6 23.6 23.6 23.6 23.6 23.6 0.0 0.0 0.0 60.8 50.7 0.0 23.6 0.0 0.0 23.6 23.6 23.6 23.6 0.0 0.0 23.7 - 10.45 51.08 1968 0.0 0.0 23.6 23.6 23.6 23.6 23.6 23.6 0.0 0.0 0.0 60.8 50.7 0.0 23.6 0.0 0.0 23.6 23.6 23.6 23.6 0.0 0.0 23.7 - 10.45 51.08 1969 0.0 0.0 23.6 23.6 23.6 23.6 23.6 23.6 0.0 0.0 0.0 60.8 50.7 0.0 23.6 0.0 0.0 23.6 23.6 23.6 23.6 0.0 0.0 23.6 - 10.45 51.08 1970 0.0 0.0 23.6 23.6 23.6 23.6 23.6 23.6 0.0 0.0 0.0 60.8 0.0 0.0 23.6 0.0 0.0 23.6 23.6 23.6 23.6 0.0 0.0 23.6 - 10.45 51.08 1971 0.0 0.0 23.6 23.6 23.6 23.6 23.6 23.6 0.0 0.0 0.0 60.8 0.0 0.0 23.6 0.0 0.0 23.6 23.6 23.6 23.6 0.0 0.0 23.6 - 10.45 51.08 1972 0.0 0.0 23.6 23.6 23.6 23.6 23.6 23.6 0.0 0.0 0.0 60.8 0.0 0.0 23.6 0.0 0.0 23.6 23.6 23.6 23.6 0.0 0.0 23.6 - 10.45 51.08 1973 0.0 0.0 23.6 23.6 23.6 23.6 23.6 23.6 0.0 0.0 0.0 60.8 0.0 0.0 23.6 0.0 0.0 23.6 23.6 23.6 23.6 0.0 0.0 23.6 - 10.45 51.08 1974 0.0 0.0 23.6 23.6 23.6 23.6 23.6 23.6 0.0 0.0 0.0 60.8 0.0 0.0 23.6 0.0 0.0 23.6 23.6 23.6 23.6 0.0 0.0 23.6 - 10.45 51.08 1975 0.0 0.0 23.6 23.6 23.6 0.0 23.6 23.6 0.0 0.0 0.0 60.8 0.0 0.0 23.6 0.0 0.0 23.6 23.6 23.6 23.6 0.0 0.0 23.6 - 10.45 51.08 1976 0.0 0.0 23.6 23.6 23.6 0.0 23.6 23.6 0.0 0.0 0.0 60.8 0.0 0.0 23.6 0.0 0.0 23.6 23.6 23.6 23.6 0.0 0.0 23.6 - 10.45 51.08 1977 0.0 0.0 23.6 23.6 23.6 0.0 23.6 23.6 0.0 0.0 0.0 60.8 0.0 0.0 23.6 0.0 0.0 23.6 23.6 23.6 23.6 0.0 0.0 23.6 - 10.45 51.08 1978 0.0 0.0 23.6 23.6 23.6 0.0 23.6 23.6 0.0 0.0 0.0 60.8 0.0 0.0 23.6 0.0 0.0 23.6 23.6 23.6 23.6 0.0 0.0 23.6 - 10.45 51.08 1979 0.0 0.0 23.6 23.6 23.6 0.0 23.6 23.6 0.0 0.0 0.0 60.8 0.0 0.0 23.6 0.0 0.0 23.6 23.6 23.6 23.6 0.0 0.0 23.6 - 10.45 51.08 1980 0.0 0.0 23.6 23.6 23.6 0.0 23.6 23.6 0.0 0.0 0.0 60.8 0.0 0.0 23.6 0.0 0.0 23.6 23.6 23.6 23.6 0.0 0.0 23.6 - 10.45 51.08 1981 0.0 0.0 23.6 23.6 23.6 0.0 23.6 23.6 0.0 0.0 0.0 60.8 0.0 0.0 23.6 0.0 0.0 23.6 23.6 23.6 23.6 0.0 0.0 23.6 - 10.45 51.08 1982 0.0 0.0 23.6 23.6 23.6 0.0 23.6 23.6 0.0 0.0 0.0 60.8 0.0 0.0 23.6 0.0 0.0 23.6 23.6 23.6 23.6 0.0 0.0 23.6 - 10.45 51.08 1983 0.0 0.0 23.6 23.6 23.6 0.0 23.6 23.6 0.0 0.0 0.0 0.0 0.0 0.0 23.6 0.0 0.0 23.6 23.6 23.6 23.6 0.0 0.0 23.6 - 10.45 51.08 1984 0.0 0.0 23.6 23.6 23.6 0.0 23.6 23.6 0.0 0.0 0.0 0.0 0.0 0.0 23.6 0.0 0.0 23.6 23.6 23.6 23.6 0.0 0.0 23.6 - 10.45 51.08 1985 0.0 0.0 23.6 23.6 23.6 0.0 23.6 23.6 0.0 0.0 0.0 0.0 0.0 0.0 23.6 0.0 0.0 23.6 23.6 23.6 23.6 0.0 0.0 23.6 - 10.45 51.08 1986 0.0 0.0 23.6 23.6 23.6 0.0 23.6 23.6 0.0 0.0 0.0 0.0 0.0 0.0 23.6 0.0 0.0 23.6 23.6 23.6 23.6 0.0 0.0 23.6 - 10.45 51.08 1987 0.0 0.0 23.6 23.6 23.6 0.0 23.6 23.6 0.0 0.0 0.0 0.0 0.0 0.0 23.6 0.0 0.0 23.6 23.6 23.6 23.6 0.0 0.0 23.6 - 10.45 51.08 1988 0.0 0.0 23.6 23.6 23.6 0.0 23.6 23.6 0.0 0.0 0.0 0.0 0.0 0.0 23.6 0.0 0.0 23.6 23.6 23.6 23.6 0.0 0.0 23.6 - 10.45 51.08 1989 0.0 0.0 23.6 23.6 23.6 0.0 23.6 23.6 0.0 0.0 0.0 0.0 0.0 0.0 23.6 0.0 0.0 23.6 23.6 23.6 23.6 0.0 0.0 23.6 - 10.45 51.08 1990 0.0 0.0 23.6 23.6 23.6 0.0 23.6 23.6 0.0 0.0 0.0 0.0 0.0 0.0 23.6 0.0 0.0 23.6 23.6 23.6 23.6 0.0 0.0 23.6 - 10.45 51.08 1991 0.0 0.0 23.6 23.6 23.6 0.0 23.6 23.6 0.0 0.0 0.0 0.0 0.0 0.0 23.6 0.0 0.0 23.6 23.6 23.6 23.6 0.0 0.0 23.6 - 10.45 51.08 1992 0.0 0.0 23.6 23.6 23.6 0.0 23.6 23.6 0.0 0.0 0.0 0.0 0.0 0.0 23.6 0.0 0.0 23.6 23.6 23.6 23.6 0.0 0.0 23.6 - 10.45 51.08 1993 0.0 0.0 23.6 23.6 23.6 0.0 23.6 23.6 0.0 0.0 0.0 0.0 0.0 0.0 23.6 0.0 0.0 23.6 23.6 23.6 23.6 0.0 0.0 23.6 - 10.45 51.08 1994 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 - 10.45 51.08 1995 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 - 10.45 51.08 1996 0.0 37.3 23.6 23.6 23.6 23.6 23.6 23.6 0.0 0.0 56.4 60.8 50.7 0.0 23.6 0.0 0.0 23.6 23.6 23.6 23.6 23.6 0.0 24.4 - 10.45 51.08 1997 0.0 37.3 23.6 23.6 23.6 23.6 23.6 23.6 0.0 0.0 56.4 60.8 50.7 0.0 23.6 0.0 0.0 23.6 23.6 23.6 23.6 23.6 0.0 24.6 - 10.45 51.08 1998 0.0 37.3 23.6 23.6 23.6 23.6 23.6 23.6 0.0 0.0 56.4 60.8 50.7 0.0 23.6 0.0 0.0 23.6 23.6 23.6 23.6 23.6 0.0 25.5 - 10.45 51.08 1999 0.0 37.3 23.6 23.6 23.6 23.6 23.6 23.6 0.0 0.0 56.4 60.8 50.7 0.0 23.6 0.0 0.0 23.6 23.6 23.6 23.6 23.6 0.0 25.8 - 10.45 51.08 2000 0.0 37.3 23.6 23.6 23.6 23.6 23.6 23.6 0.0 0.0 56.4 60.8 50.7 0.0 23.6 0.0 0.0 23.6 23.6 23.6 23.6 0.0 0.0 25.7 - 10.45 51.08 2001 0.0 37.3 23.6 23.6 23.6 23.6 23.6 23.6 0.0 0.0 56.4 60.8 50.7 0.0 23.6 0.0 0.0 23.6 23.6 23.6 23.6 0.0 0.0 25.4 - 10.45 51.08 2002 0.0 37.3 23.6 23.6 23.6 23.6 23.6 23.6 0.0 0.0 56.4 60.8 50.7 0.0 23.6 0.0 0.0 23.6 23.6 23.6 23.6 0.0 0.0 25.1 - 10.45 51.08 2003 0.0 37.3 23.6 23.6 23.6 23.6 23.6 23.6 0.0 0.0 56.4 60.8 50.7 0.0 23.6 0.0 0.0 23.6 23.6 23.6 23.6 0.0 0.0 25.0 - 10.45 51.08 2004 0.0 37.3 23.6 23.6 23.6 23.6 23.6 23.6 0.0 0.0 56.4 60.8 50.7 0.0 23.6 0.0 0.0 23.6 23.6 23.6 23.6 0.0 0.0 24.7 - 10.45 51.08 2005 0.0 37.3 23.6 23.6 23.6 23.6 23.6 23.6 0.0 0.0 56.4 60.8 50.7 0.0 23.6 0.0 0.0 23.6 23.6 23.6 23.6 0.0 0.0 24.5 - 10.45 51.08 2006 0.0 37.3 23.6 23.6 23.6 23.6 23.6 23.6 0.0 0.0 56.4 60.8 50.7 0.0 23.6 0.0 0.0 23.6 23.6 23.6 23.6 0.0 0.0 24.3 - 10.45 51.08 2007 0.0 37.3 23.6 23.6 23.6 23.6 23.6 23.6 0.0 0.0 56.4 60.8 50.7 0.0 23.6 0.0 0.0 23.6 23.6 23.6 23.6 0.0 0.0 24.1 - 10.45 51.08 2008 0.0 37.3 23.6 23.6 23.6 23.6 23.6 23.6 0.0 0.0 56.4 60.8 50.7 0.0 23.6 0.0 0.0 23.6 23.6 23.6 23.6 0.0 0.0 24.0 - 10.45 51.08 2009 0.0 0.0 23.6 23.6 23.6 23.6 23.6 23.6 0.0 0.0 56.4 60.8 50.7 0.0 23.6 0.0 0.0 23.6 23.6 23.6 23.6 0.0 0.0 23.9 - 10.45 51.08 2010 0.0 0.0 23.6 23.6 23.6 23.6 23.6 23.6 0.0 0.0 56.4 60.8 50.7 0.0 23.6 0.0 0.0 23.6 23.6 23.6 23.6 0.0 0.0 23.8 - 10.45 51.08 2011 0.0 0.0 23.6 23.6 23.6 23.6 23.6 23.6 0.0 0.0 0.0 60.8 50.7 0.0 23.6 0.0 0.0 23.6 23.6 23.6 23.6 0.0 0.0 23.7 - 10.45 51.08 2012 0.0 0.0 23.6 23.6 23.6 23.6 23.6 23.6 0.0 0.0 0.0 60.8 50.7 0.0 23.6 0.0 0.0 23.6 23.6 23.6 23.6 0.0 0.0 23.7 diff --git a/rLPJGUESS/inst/extdata/outputsForTests/run_nyear_spinup/outDirectory/dens.out b/rLPJGUESS/inst/extdata/outputsForTests/run_nyear_spinup/outDirectory/dens.out deleted file mode 100644 index c34fb08..0000000 --- a/rLPJGUESS/inst/extdata/outputsForTests/run_nyear_spinup/outDirectory/dens.out +++ /dev/null @@ -1,63 +0,0 @@ - Lon Lat Year Abi_alb BES Bet_pen Bet_pub Car_bet Cor_ave Fag_syl Fra_exc Jun_oxy MRS Pic_abi Pic_sit Pin_syl Pin_hal Pop_tre Que_coc Que_ile Que_pub Que_rob Til_cor Ulm_gla C3_gr C4_gr Total - 10.45 51.08 1951 0.0000 0.0400 0.0460 0.0380 0.0380 0.0280 0.0080 0.0210 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0480 0.0000 0.0000 0.0260 0.0400 0.0330 0.0210 0.0000 0.0000 0.3870 - 10.45 51.08 1952 0.0000 0.0400 0.0450 0.0370 0.0380 0.0280 0.0080 0.0210 0.0000 0.0000 0.0120 0.0000 0.0300 0.0000 0.0470 0.0000 0.0000 0.0260 0.0410 0.0330 0.0210 0.0000 0.0000 0.4270 - 10.45 51.08 1953 0.0000 0.0400 0.0450 0.0370 0.0380 0.0300 0.0080 0.0210 0.0000 0.0000 0.0120 0.0360 0.0300 0.0000 0.0470 0.0000 0.0000 0.0260 0.0410 0.0330 0.0210 0.0000 0.0000 0.4650 - 10.45 51.08 1954 0.0000 0.0400 0.0430 0.0370 0.0380 0.0300 0.0080 0.0200 0.0000 0.0000 0.0120 0.0360 0.0300 0.0000 0.0470 0.0000 0.0000 0.0260 0.0410 0.0330 0.0210 0.0000 0.0000 0.4620 - 10.45 51.08 1955 0.0000 0.0390 0.0430 0.0370 0.0380 0.0300 0.0080 0.0200 0.0000 0.0000 0.0120 0.0360 0.0300 0.0000 0.0460 0.0000 0.0000 0.0250 0.0410 0.0320 0.0210 0.0000 0.0000 0.4580 - 10.45 51.08 1956 0.0000 0.0390 0.0430 0.0360 0.0380 0.0300 0.0080 0.0200 0.0000 0.0000 0.0120 0.0360 0.0300 0.0000 0.0460 0.0000 0.0000 0.0240 0.0410 0.0320 0.0210 0.0000 0.0000 0.4560 - 10.45 51.08 1957 0.0000 0.0370 0.0430 0.0350 0.0370 0.0300 0.0080 0.0190 0.0000 0.0000 0.0110 0.0360 0.0300 0.0000 0.0440 0.0000 0.0000 0.0240 0.0410 0.0310 0.0210 0.0000 0.0000 0.4470 - 10.45 51.08 1958 0.0000 0.0300 0.0410 0.0350 0.0360 0.0300 0.0080 0.0190 0.0000 0.0000 0.0110 0.0360 0.0290 0.0000 0.0440 0.0000 0.0000 0.0230 0.0400 0.0310 0.0200 0.0000 0.0000 0.4330 - 10.45 51.08 1959 0.0000 0.0220 0.0390 0.0340 0.0360 0.0290 0.0080 0.0190 0.0000 0.0000 0.0110 0.0320 0.0290 0.0000 0.0440 0.0000 0.0000 0.0230 0.0400 0.0300 0.0200 0.0000 0.0000 0.4160 - 10.45 51.08 1960 0.0000 0.0170 0.0370 0.0320 0.0360 0.0280 0.0080 0.0190 0.0000 0.0000 0.0110 0.0310 0.0290 0.0000 0.0420 0.0000 0.0000 0.0230 0.0400 0.0300 0.0200 0.0000 0.0000 0.4030 - 10.45 51.08 1961 0.0000 0.0140 0.0360 0.0310 0.0350 0.0280 0.0080 0.0180 0.0000 0.0000 0.0110 0.0290 0.0290 0.0000 0.0420 0.0000 0.0000 0.0220 0.0400 0.0300 0.0200 0.0000 0.0000 0.3930 - 10.45 51.08 1962 0.0000 0.0100 0.0350 0.0310 0.0340 0.0260 0.0080 0.0180 0.0000 0.0000 0.0100 0.0280 0.0280 0.0000 0.0350 0.0000 0.0000 0.0220 0.0390 0.0300 0.0200 0.0000 0.0000 0.3740 - 10.45 51.08 1963 0.0000 0.0010 0.0310 0.0310 0.0340 0.0220 0.0080 0.0170 0.0000 0.0000 0.0100 0.0000 0.0280 0.0000 0.0350 0.0000 0.0000 0.0220 0.0390 0.0300 0.0200 0.0000 0.0000 0.3280 - 10.45 51.08 1964 0.0000 0.0000 0.0280 0.0300 0.0330 0.0210 0.0080 0.0170 0.0000 0.0000 0.0100 0.0000 0.0280 0.0000 0.0350 0.0000 0.0000 0.0220 0.0370 0.0280 0.0200 0.0000 0.0000 0.3170 - 10.45 51.08 1965 0.0000 0.0000 0.0270 0.0300 0.0320 0.0200 0.0080 0.0170 0.0000 0.0000 0.0100 0.0000 0.0280 0.0000 0.0290 0.0000 0.0000 0.0220 0.0360 0.0260 0.0190 0.0000 0.0000 0.3040 - 10.45 51.08 1966 0.0000 0.0000 0.0240 0.0300 0.0320 0.0190 0.0080 0.0170 0.0000 0.0000 0.0100 0.0000 0.0280 0.0000 0.0280 0.0000 0.0000 0.0220 0.0350 0.0260 0.0190 0.0000 0.0000 0.2980 - 10.45 51.08 1967 0.0000 0.0000 0.0200 0.0300 0.0320 0.0190 0.0080 0.0170 0.0000 0.0000 0.0000 0.0000 0.0280 0.0000 0.0250 0.0000 0.0000 0.0210 0.0350 0.0260 0.0190 0.0000 0.0000 0.2800 - 10.45 51.08 1968 0.0000 0.0000 0.0180 0.0300 0.0320 0.0180 0.0080 0.0170 0.0000 0.0000 0.0000 0.0000 0.0280 0.0000 0.0240 0.0000 0.0000 0.0210 0.0350 0.0250 0.0190 0.0000 0.0000 0.2750 - 10.45 51.08 1969 0.0000 0.0000 0.0170 0.0290 0.0320 0.0170 0.0080 0.0170 0.0000 0.0000 0.0000 0.0000 0.0270 0.0000 0.0210 0.0000 0.0000 0.0210 0.0320 0.0250 0.0190 0.0000 0.0000 0.2650 - 10.45 51.08 1970 0.0000 0.0000 0.0170 0.0290 0.0320 0.0160 0.0080 0.0170 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0200 0.0000 0.0000 0.0210 0.0310 0.0240 0.0190 0.0000 0.0000 0.2340 - 10.45 51.08 1971 0.0000 0.0000 0.0170 0.0280 0.0320 0.0120 0.0080 0.0170 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0170 0.0000 0.0000 0.0200 0.0300 0.0230 0.0190 0.0000 0.0000 0.2230 - 10.45 51.08 1972 0.0000 0.0000 0.0160 0.0280 0.0310 0.0110 0.0080 0.0170 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0170 0.0000 0.0000 0.0190 0.0290 0.0220 0.0190 0.0000 0.0000 0.2170 - 10.45 51.08 1973 0.0000 0.0000 0.0140 0.0280 0.0300 0.0110 0.0080 0.0170 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0170 0.0000 0.0000 0.0190 0.0280 0.0220 0.0190 0.0000 0.0000 0.2130 - 10.45 51.08 1974 0.0000 0.0000 0.0140 0.0280 0.0300 0.0090 0.0080 0.0170 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0130 0.0000 0.0000 0.0190 0.0280 0.0200 0.0190 0.0000 0.0000 0.2050 - 10.45 51.08 1975 0.0000 0.0000 0.0120 0.0280 0.0280 0.0000 0.0080 0.0160 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0120 0.0000 0.0000 0.0190 0.0270 0.0190 0.0180 0.0000 0.0000 0.1870 - 10.45 51.08 1976 0.0000 0.0000 0.0100 0.0280 0.0270 0.0000 0.0080 0.0150 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0100 0.0000 0.0000 0.0190 0.0270 0.0190 0.0180 0.0000 0.0000 0.1810 - 10.45 51.08 1977 0.0000 0.0000 0.0070 0.0270 0.0270 0.0000 0.0080 0.0150 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0100 0.0000 0.0000 0.0180 0.0260 0.0180 0.0160 0.0000 0.0000 0.1720 - 10.45 51.08 1978 0.0000 0.0000 0.0070 0.0270 0.0270 0.0000 0.0080 0.0150 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0090 0.0000 0.0000 0.0170 0.0260 0.0170 0.0160 0.0000 0.0000 0.1690 - 10.45 51.08 1979 0.0000 0.0000 0.0050 0.0270 0.0270 0.0000 0.0080 0.0150 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0090 0.0000 0.0000 0.0170 0.0250 0.0160 0.0160 0.0000 0.0000 0.1650 - 10.45 51.08 1980 0.0000 0.0000 0.0050 0.0270 0.0270 0.0000 0.0080 0.0150 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0080 0.0000 0.0000 0.0160 0.0230 0.0140 0.0150 0.0000 0.0000 0.1580 - 10.45 51.08 1981 0.0000 0.0000 0.0040 0.0270 0.0260 0.0000 0.0080 0.0150 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0050 0.0000 0.0000 0.0160 0.0220 0.0140 0.0150 0.0000 0.0000 0.1520 - 10.45 51.08 1982 0.0000 0.0000 0.0030 0.0260 0.0260 0.0000 0.0080 0.0150 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0030 0.0000 0.0000 0.0150 0.0220 0.0130 0.0150 0.0000 0.0000 0.1460 - 10.45 51.08 1983 0.0000 0.0000 0.0030 0.0260 0.0250 0.0000 0.0080 0.0150 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0030 0.0000 0.0000 0.0150 0.0220 0.0130 0.0150 0.0000 0.0000 0.1450 - 10.45 51.08 1984 0.0000 0.0000 0.0030 0.0260 0.0240 0.0000 0.0080 0.0150 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0020 0.0000 0.0000 0.0140 0.0210 0.0120 0.0150 0.0000 0.0000 0.1400 - 10.45 51.08 1985 0.0000 0.0000 0.0030 0.0250 0.0240 0.0000 0.0080 0.0130 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0020 0.0000 0.0000 0.0130 0.0210 0.0120 0.0150 0.0000 0.0000 0.1360 - 10.45 51.08 1986 0.0000 0.0000 0.0030 0.0240 0.0240 0.0000 0.0080 0.0130 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0020 0.0000 0.0000 0.0130 0.0200 0.0120 0.0150 0.0000 0.0000 0.1340 - 10.45 51.08 1987 0.0000 0.0000 0.0030 0.0230 0.0240 0.0000 0.0080 0.0130 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0020 0.0000 0.0000 0.0130 0.0200 0.0120 0.0150 0.0000 0.0000 0.1330 - 10.45 51.08 1988 0.0000 0.0000 0.0030 0.0230 0.0230 0.0000 0.0080 0.0130 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0020 0.0000 0.0000 0.0130 0.0200 0.0120 0.0150 0.0000 0.0000 0.1320 - 10.45 51.08 1989 0.0000 0.0000 0.0020 0.0230 0.0230 0.0000 0.0080 0.0120 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0010 0.0000 0.0000 0.0130 0.0200 0.0120 0.0150 0.0000 0.0000 0.1290 - 10.45 51.08 1990 0.0000 0.0000 0.0020 0.0230 0.0230 0.0000 0.0080 0.0120 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0010 0.0000 0.0000 0.0130 0.0200 0.0110 0.0150 0.0000 0.0000 0.1280 - 10.45 51.08 1991 0.0000 0.0000 0.0020 0.0230 0.0210 0.0000 0.0080 0.0120 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0010 0.0000 0.0000 0.0130 0.0190 0.0110 0.0150 0.0000 0.0000 0.1250 - 10.45 51.08 1992 0.0000 0.0000 0.0020 0.0230 0.0200 0.0000 0.0080 0.0120 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0010 0.0000 0.0000 0.0120 0.0190 0.0110 0.0150 0.0000 0.0000 0.1230 - 10.45 51.08 1993 0.0000 0.0000 0.0020 0.0230 0.0200 0.0000 0.0080 0.0120 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0010 0.0000 0.0000 0.0120 0.0180 0.0090 0.0150 0.0000 0.0000 0.1200 - 10.45 51.08 1994 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 - 10.45 51.08 1995 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 - 10.45 51.08 1996 0.0000 0.0290 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0290 - 10.45 51.08 1997 0.0000 0.0290 0.0000 0.0370 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0660 - 10.45 51.08 1998 0.0000 0.0290 0.0460 0.0350 0.0320 0.0230 0.0100 0.0430 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0320 0.0000 0.0000 0.0240 0.0300 0.0330 0.0270 0.0000 0.0000 0.3640 - 10.45 51.08 1999 0.0000 0.0290 0.0460 0.0350 0.0320 0.0260 0.0100 0.0440 0.0000 0.0000 0.0070 0.0000 0.0320 0.0000 0.0320 0.0000 0.0000 0.0240 0.0300 0.0330 0.0270 0.0000 0.0000 0.4070 - 10.45 51.08 2000 0.0000 0.0290 0.0460 0.0350 0.0320 0.0260 0.0100 0.0440 0.0000 0.0000 0.0070 0.0290 0.0320 0.0000 0.0320 0.0000 0.0000 0.0240 0.0300 0.0330 0.0270 0.0000 0.0000 0.4360 - 10.45 51.08 2001 0.0000 0.0280 0.0460 0.0350 0.0320 0.0260 0.0100 0.0440 0.0000 0.0000 0.0070 0.0290 0.0320 0.0000 0.0320 0.0000 0.0000 0.0240 0.0300 0.0330 0.0270 0.0000 0.0000 0.4350 - 10.45 51.08 2002 0.0000 0.0270 0.0460 0.0350 0.0320 0.0260 0.0100 0.0440 0.0000 0.0000 0.0070 0.0290 0.0320 0.0000 0.0320 0.0000 0.0000 0.0240 0.0300 0.0330 0.0270 0.0000 0.0000 0.4340 - 10.45 51.08 2003 0.0000 0.0270 0.0450 0.0340 0.0320 0.0260 0.0100 0.0440 0.0000 0.0000 0.0070 0.0290 0.0320 0.0000 0.0310 0.0000 0.0000 0.0240 0.0300 0.0330 0.0270 0.0000 0.0000 0.4310 - 10.45 51.08 2004 0.0000 0.0230 0.0450 0.0340 0.0320 0.0260 0.0100 0.0440 0.0000 0.0000 0.0070 0.0280 0.0320 0.0000 0.0310 0.0000 0.0000 0.0240 0.0300 0.0330 0.0270 0.0000 0.0000 0.4260 - 10.45 51.08 2005 0.0000 0.0160 0.0430 0.0340 0.0320 0.0260 0.0100 0.0440 0.0000 0.0000 0.0070 0.0270 0.0310 0.0000 0.0290 0.0000 0.0000 0.0240 0.0300 0.0330 0.0270 0.0000 0.0000 0.4130 - 10.45 51.08 2006 0.0000 0.0120 0.0410 0.0340 0.0310 0.0240 0.0100 0.0430 0.0000 0.0000 0.0070 0.0270 0.0300 0.0000 0.0290 0.0000 0.0000 0.0240 0.0300 0.0330 0.0270 0.0000 0.0000 0.4020 - 10.45 51.08 2007 0.0000 0.0050 0.0400 0.0340 0.0310 0.0230 0.0100 0.0430 0.0000 0.0000 0.0070 0.0250 0.0300 0.0000 0.0290 0.0000 0.0000 0.0240 0.0290 0.0330 0.0270 0.0000 0.0000 0.3900 - 10.45 51.08 2008 0.0000 0.0040 0.0370 0.0340 0.0310 0.0220 0.0100 0.0410 0.0000 0.0000 0.0070 0.0250 0.0300 0.0000 0.0280 0.0000 0.0000 0.0240 0.0290 0.0320 0.0260 0.0000 0.0000 0.3800 - 10.45 51.08 2009 0.0000 0.0000 0.0370 0.0330 0.0310 0.0220 0.0100 0.0410 0.0000 0.0000 0.0070 0.0000 0.0280 0.0000 0.0270 0.0000 0.0000 0.0240 0.0290 0.0310 0.0260 0.0000 0.0000 0.3460 - 10.45 51.08 2010 0.0000 0.0000 0.0350 0.0330 0.0310 0.0170 0.0100 0.0400 0.0000 0.0000 0.0070 0.0000 0.0280 0.0000 0.0260 0.0000 0.0000 0.0240 0.0290 0.0310 0.0250 0.0000 0.0000 0.3360 - 10.45 51.08 2011 0.0000 0.0000 0.0350 0.0330 0.0310 0.0160 0.0100 0.0390 0.0000 0.0000 0.0000 0.0000 0.0280 0.0000 0.0240 0.0000 0.0000 0.0240 0.0290 0.0290 0.0250 0.0000 0.0000 0.3230 - 10.45 51.08 2012 0.0000 0.0000 0.0300 0.0320 0.0310 0.0120 0.0100 0.0390 0.0000 0.0000 0.0000 0.0000 0.0280 0.0000 0.0210 0.0000 0.0000 0.0240 0.0290 0.0270 0.0250 0.0000 0.0000 0.3080 diff --git a/rLPJGUESS/inst/extdata/outputsForTests/run_nyear_spinup/outDirectory/firert.out b/rLPJGUESS/inst/extdata/outputsForTests/run_nyear_spinup/outDirectory/firert.out deleted file mode 100644 index db26147..0000000 --- a/rLPJGUESS/inst/extdata/outputsForTests/run_nyear_spinup/outDirectory/firert.out +++ /dev/null @@ -1,63 +0,0 @@ - Lon Lat Year FireRT - 10.45 51.08 1951 186.7 - 10.45 51.08 1952 123.1 - 10.45 51.08 1953 160.4 - 10.45 51.08 1954 196.3 - 10.45 51.08 1955 468.1 - 10.45 51.08 1956 1000.0 - 10.45 51.08 1957 225.6 - 10.45 51.08 1958 380.1 - 10.45 51.08 1959 100.4 - 10.45 51.08 1960 120.7 - 10.45 51.08 1961 112.8 - 10.45 51.08 1962 66.4 - 10.45 51.08 1963 136.5 - 10.45 51.08 1964 111.6 - 10.45 51.08 1965 136.1 - 10.45 51.08 1966 293.1 - 10.45 51.08 1967 154.0 - 10.45 51.08 1968 119.4 - 10.45 51.08 1969 175.7 - 10.45 51.08 1970 159.2 - 10.45 51.08 1971 116.2 - 10.45 51.08 1972 1000.0 - 10.45 51.08 1973 117.6 - 10.45 51.08 1974 506.0 - 10.45 51.08 1975 127.1 - 10.45 51.08 1976 112.5 - 10.45 51.08 1977 266.2 - 10.45 51.08 1978 156.2 - 10.45 51.08 1979 152.4 - 10.45 51.08 1980 120.2 - 10.45 51.08 1981 1000.0 - 10.45 51.08 1982 110.6 - 10.45 51.08 1983 114.1 - 10.45 51.08 1984 1000.0 - 10.45 51.08 1985 105.6 - 10.45 51.08 1986 183.5 - 10.45 51.08 1987 1000.0 - 10.45 51.08 1988 106.8 - 10.45 51.08 1989 117.1 - 10.45 51.08 1990 118.6 - 10.45 51.08 1991 103.3 - 10.45 51.08 1992 124.9 - 10.45 51.08 1993 237.2 - 10.45 51.08 1994 997.9 - 10.45 51.08 1995 1000.0 - 10.45 51.08 1996 1000.0 - 10.45 51.08 1997 119.9 - 10.45 51.08 1998 122.9 - 10.45 51.08 1999 213.3 - 10.45 51.08 2000 131.2 - 10.45 51.08 2001 219.0 - 10.45 51.08 2002 1000.0 - 10.45 51.08 2003 119.1 - 10.45 51.08 2004 118.2 - 10.45 51.08 2005 117.9 - 10.45 51.08 2006 124.4 - 10.45 51.08 2007 218.7 - 10.45 51.08 2008 116.4 - 10.45 51.08 2009 129.9 - 10.45 51.08 2010 195.2 - 10.45 51.08 2011 99.8 - 10.45 51.08 2012 114.6 diff --git a/rLPJGUESS/inst/extdata/outputsForTests/run_nyear_spinup/outDirectory/fpc.out b/rLPJGUESS/inst/extdata/outputsForTests/run_nyear_spinup/outDirectory/fpc.out deleted file mode 100644 index b029d2e..0000000 --- a/rLPJGUESS/inst/extdata/outputsForTests/run_nyear_spinup/outDirectory/fpc.out +++ /dev/null @@ -1,63 +0,0 @@ - Lon Lat Year Abi_alb BES Bet_pen Bet_pub Car_bet Cor_ave Fag_syl Fra_exc Jun_oxy MRS Pic_abi Pic_sit Pin_syl Pin_hal Pop_tre Que_coc Que_ile Que_pub Que_rob Til_cor Ulm_gla C3_gr C4_gr Total - 10.45 51.08 1951 0.000 0.009 0.056 0.054 0.047 0.029 0.010 0.026 0.000 0.000 0.005 0.014 0.014 0.000 0.058 0.000 0.000 0.032 0.050 0.040 0.026 0.483 0.000 0.950 - 10.45 51.08 1952 0.000 0.010 0.074 0.073 0.063 0.037 0.014 0.035 0.000 0.000 0.006 0.016 0.017 0.000 0.076 0.000 0.000 0.044 0.068 0.052 0.035 0.056 0.000 0.675 - 10.45 51.08 1953 0.000 0.011 0.096 0.098 0.083 0.047 0.018 0.046 0.000 0.000 0.007 0.019 0.020 0.000 0.099 0.000 0.000 0.057 0.089 0.068 0.046 0.000 0.000 0.804 - 10.45 51.08 1954 0.000 0.011 0.106 0.117 0.096 0.052 0.021 0.051 0.000 0.000 0.008 0.021 0.021 0.000 0.114 0.000 0.000 0.067 0.103 0.079 0.053 0.000 0.000 0.920 - 10.45 51.08 1955 0.000 0.010 0.117 0.135 0.106 0.055 0.023 0.056 0.000 0.000 0.008 0.020 0.022 0.000 0.122 0.000 0.000 0.071 0.114 0.084 0.059 0.000 0.000 1.004 - 10.45 51.08 1956 0.000 0.010 0.127 0.149 0.116 0.057 0.026 0.062 0.000 0.000 0.008 0.020 0.022 0.000 0.132 0.000 0.000 0.075 0.125 0.091 0.065 0.000 0.000 1.084 - 10.45 51.08 1957 0.000 0.010 0.136 0.164 0.123 0.058 0.028 0.064 0.000 0.000 0.007 0.019 0.021 0.000 0.135 0.000 0.000 0.081 0.136 0.095 0.070 0.000 0.000 1.148 - 10.45 51.08 1958 0.000 0.007 0.137 0.180 0.127 0.058 0.030 0.068 0.000 0.000 0.007 0.018 0.020 0.000 0.142 0.000 0.000 0.082 0.141 0.101 0.072 0.000 0.000 1.192 - 10.45 51.08 1959 0.000 0.005 0.130 0.182 0.128 0.053 0.030 0.069 0.000 0.000 0.007 0.013 0.018 0.000 0.140 0.000 0.000 0.083 0.142 0.095 0.072 0.000 0.000 1.168 - 10.45 51.08 1960 0.000 0.004 0.129 0.188 0.135 0.050 0.032 0.073 0.000 0.000 0.006 0.011 0.017 0.000 0.139 0.000 0.000 0.088 0.150 0.100 0.077 0.000 0.000 1.199 - 10.45 51.08 1961 0.000 0.003 0.131 0.200 0.138 0.049 0.034 0.073 0.000 0.000 0.006 0.008 0.016 0.000 0.144 0.000 0.000 0.089 0.159 0.104 0.081 0.000 0.000 1.235 - 10.45 51.08 1962 0.000 0.001 0.125 0.207 0.133 0.044 0.034 0.073 0.000 0.000 0.005 0.004 0.014 0.000 0.117 0.000 0.000 0.089 0.154 0.101 0.081 0.000 0.000 1.181 - 10.45 51.08 1963 0.000 0.000 0.113 0.224 0.138 0.035 0.036 0.071 0.000 0.000 0.004 0.003 0.013 0.000 0.119 0.000 0.000 0.092 0.160 0.104 0.084 0.000 0.000 1.198 - 10.45 51.08 1964 0.000 0.000 0.102 0.226 0.135 0.031 0.037 0.072 0.000 0.000 0.003 0.002 0.011 0.000 0.118 0.000 0.000 0.093 0.157 0.097 0.085 0.000 0.000 1.166 - 10.45 51.08 1965 0.000 0.000 0.101 0.247 0.137 0.028 0.039 0.076 0.000 0.000 0.002 0.000 0.010 0.000 0.101 0.000 0.000 0.098 0.160 0.093 0.084 0.000 0.000 1.178 - 10.45 51.08 1966 0.000 0.000 0.094 0.272 0.145 0.026 0.042 0.080 0.000 0.000 0.001 0.001 0.009 0.000 0.100 0.000 0.000 0.103 0.164 0.098 0.089 0.000 0.000 1.224 - 10.45 51.08 1967 0.000 0.000 0.079 0.295 0.149 0.024 0.044 0.083 0.000 0.000 0.000 0.000 0.008 0.000 0.091 0.000 0.000 0.102 0.170 0.100 0.093 0.000 0.000 1.238 - 10.45 51.08 1968 0.000 0.000 0.071 0.315 0.152 0.021 0.045 0.084 0.000 0.000 0.000 0.000 0.005 0.000 0.086 0.000 0.000 0.104 0.174 0.096 0.094 0.000 0.000 1.247 - 10.45 51.08 1969 0.000 0.000 0.066 0.324 0.154 0.017 0.047 0.086 0.000 0.000 0.000 0.000 0.002 0.000 0.074 0.000 0.000 0.106 0.162 0.095 0.096 0.000 0.000 1.230 - 10.45 51.08 1970 0.000 0.000 0.066 0.344 0.156 0.015 0.048 0.087 0.000 0.000 0.000 0.000 0.000 0.000 0.069 0.000 0.000 0.108 0.160 0.090 0.098 0.000 0.000 1.241 - 10.45 51.08 1971 0.000 0.000 0.062 0.338 0.151 0.009 0.048 0.085 0.000 0.000 0.000 0.000 0.000 0.000 0.054 0.000 0.000 0.100 0.150 0.082 0.095 0.000 0.000 1.176 - 10.45 51.08 1972 0.000 0.000 0.058 0.364 0.149 0.007 0.050 0.088 0.000 0.000 0.000 0.000 0.000 0.000 0.054 0.000 0.000 0.098 0.149 0.078 0.098 0.000 0.000 1.193 - 10.45 51.08 1973 0.000 0.000 0.047 0.371 0.141 0.004 0.050 0.085 0.000 0.000 0.000 0.000 0.000 0.000 0.050 0.000 0.000 0.095 0.141 0.074 0.095 0.000 0.000 1.153 - 10.45 51.08 1974 0.000 0.000 0.048 0.399 0.144 0.001 0.052 0.088 0.000 0.000 0.000 0.000 0.000 0.000 0.038 0.000 0.000 0.098 0.145 0.067 0.098 0.000 0.000 1.179 - 10.45 51.08 1975 0.000 0.000 0.040 0.418 0.135 0.000 0.053 0.083 0.000 0.000 0.000 0.000 0.000 0.000 0.034 0.000 0.000 0.099 0.141 0.062 0.094 0.000 0.000 1.157 - 10.45 51.08 1976 0.000 0.000 0.029 0.415 0.122 0.000 0.052 0.074 0.000 0.000 0.000 0.000 0.000 0.000 0.025 0.000 0.000 0.093 0.132 0.056 0.088 0.000 0.000 1.084 - 10.45 51.08 1977 0.000 0.000 0.020 0.425 0.124 0.000 0.053 0.075 0.000 0.000 0.000 0.000 0.000 0.000 0.024 0.000 0.000 0.090 0.130 0.052 0.080 0.000 0.000 1.075 - 10.45 51.08 1978 0.000 0.000 0.020 0.450 0.125 0.000 0.055 0.077 0.000 0.000 0.000 0.000 0.000 0.000 0.021 0.000 0.000 0.087 0.133 0.049 0.082 0.000 0.000 1.099 - 10.45 51.08 1979 0.000 0.000 0.014 0.471 0.126 0.000 0.057 0.077 0.000 0.000 0.000 0.000 0.000 0.000 0.020 0.000 0.000 0.087 0.128 0.045 0.082 0.000 0.000 1.106 - 10.45 51.08 1980 0.000 0.000 0.013 0.491 0.125 0.000 0.058 0.077 0.000 0.000 0.000 0.000 0.000 0.000 0.017 0.000 0.000 0.082 0.118 0.038 0.077 0.000 0.000 1.096 - 10.45 51.08 1981 0.000 0.000 0.011 0.518 0.121 0.000 0.059 0.078 0.000 0.000 0.000 0.000 0.000 0.000 0.010 0.000 0.000 0.083 0.114 0.037 0.078 0.000 0.000 1.109 - 10.45 51.08 1982 0.000 0.000 0.007 0.495 0.113 0.000 0.058 0.073 0.000 0.000 0.000 0.000 0.000 0.000 0.005 0.000 0.000 0.073 0.107 0.031 0.073 0.000 0.000 1.034 - 10.45 51.08 1983 0.000 0.000 0.007 0.515 0.108 0.000 0.059 0.073 0.000 0.000 0.000 0.000 0.000 0.000 0.005 0.000 0.000 0.073 0.107 0.029 0.073 0.000 0.000 1.050 - 10.45 51.08 1984 0.000 0.000 0.006 0.533 0.102 0.000 0.060 0.072 0.000 0.000 0.000 0.000 0.000 0.000 0.003 0.000 0.000 0.068 0.101 0.026 0.072 0.000 0.000 1.045 - 10.45 51.08 1985 0.000 0.000 0.006 0.533 0.102 0.000 0.062 0.063 0.000 0.000 0.000 0.000 0.000 0.000 0.003 0.000 0.000 0.063 0.102 0.025 0.073 0.000 0.000 1.032 - 10.45 51.08 1986 0.000 0.000 0.006 0.535 0.103 0.000 0.064 0.064 0.000 0.000 0.000 0.000 0.000 0.000 0.003 0.000 0.000 0.064 0.098 0.025 0.073 0.000 0.000 1.034 - 10.45 51.08 1987 0.000 0.000 0.006 0.536 0.102 0.000 0.065 0.064 0.000 0.000 0.000 0.000 0.000 0.000 0.003 0.000 0.000 0.064 0.098 0.024 0.073 0.000 0.000 1.035 - 10.45 51.08 1988 0.000 0.000 0.006 0.554 0.096 0.000 0.066 0.063 0.000 0.000 0.000 0.000 0.000 0.000 0.003 0.000 0.000 0.063 0.097 0.023 0.073 0.000 0.000 1.043 - 10.45 51.08 1989 0.000 0.000 0.003 0.563 0.093 0.000 0.066 0.056 0.000 0.000 0.000 0.000 0.000 0.000 0.001 0.000 0.000 0.061 0.094 0.022 0.070 0.000 0.000 1.029 - 10.45 51.08 1990 0.000 0.000 0.003 0.587 0.092 0.000 0.068 0.056 0.000 0.000 0.000 0.000 0.000 0.000 0.001 0.000 0.000 0.061 0.094 0.020 0.070 0.000 0.000 1.054 - 10.45 51.08 1991 0.000 0.000 0.003 0.591 0.079 0.000 0.067 0.053 0.000 0.000 0.000 0.000 0.000 0.000 0.001 0.000 0.000 0.058 0.084 0.018 0.067 0.000 0.000 1.022 - 10.45 51.08 1992 0.000 0.000 0.003 0.602 0.073 0.000 0.067 0.052 0.000 0.000 0.000 0.000 0.000 0.000 0.001 0.000 0.000 0.052 0.082 0.017 0.065 0.000 0.000 1.013 - 10.45 51.08 1993 0.000 0.000 0.003 0.627 0.073 0.000 0.069 0.052 0.000 0.000 0.000 0.000 0.000 0.000 0.001 0.000 0.000 0.052 0.079 0.014 0.066 0.000 0.000 1.036 - 10.45 51.08 1994 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1995 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1996 0.000 0.003 0.019 0.017 0.013 0.008 0.004 0.018 0.000 0.000 0.001 0.005 0.006 0.000 0.013 0.000 0.000 0.010 0.012 0.014 0.011 0.700 0.000 0.855 - 10.45 51.08 1997 0.000 0.005 0.035 0.032 0.024 0.016 0.008 0.033 0.000 0.000 0.002 0.008 0.010 0.000 0.024 0.000 0.000 0.018 0.023 0.024 0.020 0.750 0.000 1.031 - 10.45 51.08 1998 0.000 0.006 0.056 0.050 0.039 0.024 0.013 0.054 0.000 0.000 0.003 0.011 0.015 0.000 0.038 0.000 0.000 0.029 0.037 0.039 0.033 0.354 0.000 0.802 - 10.45 51.08 1999 0.000 0.007 0.082 0.075 0.057 0.034 0.020 0.079 0.000 0.000 0.004 0.014 0.019 0.000 0.056 0.000 0.000 0.043 0.054 0.058 0.049 0.143 0.000 0.794 - 10.45 51.08 2000 0.000 0.008 0.104 0.098 0.074 0.042 0.026 0.101 0.000 0.000 0.005 0.016 0.022 0.000 0.071 0.000 0.000 0.056 0.070 0.074 0.062 0.000 0.000 0.828 - 10.45 51.08 2001 0.000 0.008 0.123 0.120 0.087 0.047 0.031 0.120 0.000 0.000 0.005 0.017 0.023 0.000 0.084 0.000 0.000 0.066 0.083 0.087 0.074 0.000 0.000 0.974 - 10.45 51.08 2002 0.000 0.007 0.136 0.139 0.097 0.050 0.034 0.134 0.000 0.000 0.005 0.016 0.023 0.000 0.092 0.000 0.000 0.074 0.093 0.097 0.083 0.000 0.000 1.080 - 10.45 51.08 2003 0.000 0.007 0.142 0.149 0.104 0.050 0.036 0.144 0.000 0.000 0.005 0.016 0.022 0.000 0.095 0.000 0.000 0.079 0.100 0.101 0.089 0.000 0.000 1.141 - 10.45 51.08 2004 0.000 0.006 0.149 0.165 0.111 0.050 0.039 0.152 0.000 0.000 0.005 0.014 0.021 0.000 0.099 0.000 0.000 0.084 0.106 0.107 0.095 0.000 0.000 1.203 - 10.45 51.08 2005 0.000 0.004 0.150 0.181 0.117 0.049 0.041 0.162 0.000 0.000 0.005 0.013 0.020 0.000 0.096 0.000 0.000 0.089 0.112 0.111 0.101 0.000 0.000 1.249 - 10.45 51.08 2006 0.000 0.003 0.147 0.196 0.119 0.043 0.042 0.165 0.000 0.000 0.004 0.009 0.018 0.000 0.099 0.000 0.000 0.094 0.117 0.115 0.105 0.000 0.000 1.274 - 10.45 51.08 2007 0.000 0.001 0.151 0.217 0.126 0.040 0.044 0.177 0.000 0.000 0.004 0.007 0.017 0.000 0.104 0.000 0.000 0.101 0.122 0.121 0.113 0.000 0.000 1.344 - 10.45 51.08 2008 0.000 0.001 0.139 0.228 0.126 0.034 0.044 0.173 0.000 0.000 0.003 0.003 0.015 0.000 0.099 0.000 0.000 0.102 0.123 0.115 0.110 0.000 0.000 1.315 - 10.45 51.08 2009 0.000 0.000 0.139 0.235 0.129 0.031 0.045 0.177 0.000 0.000 0.002 0.002 0.012 0.000 0.095 0.000 0.000 0.104 0.125 0.112 0.112 0.000 0.000 1.321 - 10.45 51.08 2010 0.000 0.000 0.134 0.256 0.133 0.026 0.047 0.179 0.000 0.000 0.001 0.001 0.010 0.000 0.093 0.000 0.000 0.107 0.130 0.114 0.112 0.000 0.000 1.343 - 10.45 51.08 2011 0.000 0.000 0.134 0.274 0.135 0.022 0.049 0.178 0.000 0.000 0.000 0.000 0.006 0.000 0.085 0.000 0.000 0.110 0.133 0.106 0.114 0.000 0.000 1.347 - 10.45 51.08 2012 0.000 0.000 0.112 0.278 0.134 0.014 0.049 0.178 0.000 0.000 0.000 0.000 0.002 0.000 0.072 0.000 0.000 0.109 0.132 0.097 0.114 0.000 0.000 1.292 diff --git a/rLPJGUESS/inst/extdata/outputsForTests/run_nyear_spinup/outDirectory/lai.out b/rLPJGUESS/inst/extdata/outputsForTests/run_nyear_spinup/outDirectory/lai.out deleted file mode 100644 index fdf392b..0000000 --- a/rLPJGUESS/inst/extdata/outputsForTests/run_nyear_spinup/outDirectory/lai.out +++ /dev/null @@ -1,63 +0,0 @@ - Lon Lat Year Abi_alb BES Bet_pen Bet_pub Car_bet Cor_ave Fag_syl Fra_exc Jun_oxy MRS Pic_abi Pic_sit Pin_syl Pin_hal Pop_tre Que_coc Que_ile Que_pub Que_rob Til_cor Ulm_gla C3_gr C4_gr Total - 10.45 51.08 1951 0.0000 0.0551 0.2580 0.2556 0.2179 0.1132 0.0476 0.1206 0.0000 0.0000 0.0272 0.0762 0.0601 0.0000 0.2670 0.0000 0.0000 0.1503 0.2332 0.1842 0.1206 1.3175 0.0000 3.5041 - 10.45 51.08 1952 0.0000 0.0606 0.3511 0.3582 0.3061 0.1509 0.0677 0.1696 0.0000 0.0000 0.0325 0.0890 0.0723 0.0000 0.3568 0.0000 0.0000 0.2115 0.3281 0.2486 0.1696 0.1146 0.0000 3.0871 - 10.45 51.08 1953 0.0000 0.0661 0.4705 0.4974 0.4146 0.1924 0.0927 0.2299 0.0000 0.0000 0.0393 0.1056 0.0850 0.0000 0.4783 0.0000 0.0000 0.2867 0.4447 0.3367 0.2299 0.0000 0.0000 3.9700 - 10.45 51.08 1954 0.0000 0.0663 0.5151 0.5955 0.4813 0.2117 0.1090 0.2550 0.0000 0.0000 0.0424 0.1101 0.0906 0.0000 0.5470 0.0000 0.0000 0.3337 0.5173 0.3897 0.2677 0.0000 0.0000 4.5324 - 10.45 51.08 1955 0.0000 0.0604 0.5544 0.6859 0.5261 0.2194 0.1209 0.2798 0.0000 0.0000 0.0417 0.1026 0.0885 0.0000 0.5747 0.0000 0.0000 0.3518 0.5669 0.4106 0.2938 0.0000 0.0000 4.8774 - 10.45 51.08 1956 0.0000 0.0566 0.5896 0.7511 0.5693 0.2233 0.1329 0.3035 0.0000 0.0000 0.0410 0.0956 0.0865 0.0000 0.6092 0.0000 0.0000 0.3661 0.6142 0.4413 0.3186 0.0000 0.0000 5.1988 - 10.45 51.08 1957 0.0000 0.0486 0.6230 0.8292 0.5952 0.2227 0.1450 0.3108 0.0000 0.0000 0.0356 0.0871 0.0820 0.0000 0.6121 0.0000 0.0000 0.3926 0.6613 0.4535 0.3435 0.0000 0.0000 5.4422 - 10.45 51.08 1958 0.0000 0.0343 0.6129 0.9044 0.6084 0.2151 0.1552 0.3277 0.0000 0.0000 0.0329 0.0766 0.0723 0.0000 0.6291 0.0000 0.0000 0.3967 0.6792 0.4725 0.3450 0.0000 0.0000 5.5622 - 10.45 51.08 1959 0.0000 0.0210 0.5523 0.8814 0.5875 0.1852 0.1523 0.3181 0.0000 0.0000 0.0263 0.0431 0.0621 0.0000 0.5853 0.0000 0.0000 0.3851 0.6583 0.4257 0.3348 0.0000 0.0000 5.2184 - 10.45 51.08 1960 0.0000 0.0140 0.5395 0.9102 0.6143 0.1694 0.1621 0.3342 0.0000 0.0000 0.0244 0.0337 0.0568 0.0000 0.5718 0.0000 0.0000 0.4046 0.6901 0.4391 0.3518 0.0000 0.0000 5.3159 - 10.45 51.08 1961 0.0000 0.0088 0.5378 0.9702 0.6257 0.1599 0.1726 0.3329 0.0000 0.0000 0.0213 0.0219 0.0512 0.0000 0.5809 0.0000 0.0000 0.4069 0.7251 0.4493 0.3699 0.0000 0.0000 5.4344 - 10.45 51.08 1962 0.0000 0.0038 0.4877 0.9788 0.5792 0.1357 0.1679 0.3181 0.0000 0.0000 0.0139 0.0089 0.0428 0.0000 0.4468 0.0000 0.0000 0.3887 0.6746 0.4201 0.3534 0.0000 0.0000 5.0203 - 10.45 51.08 1963 0.0000 0.0002 0.4355 1.0565 0.5949 0.1062 0.1756 0.3091 0.0000 0.0000 0.0108 0.0068 0.0379 0.0000 0.4478 0.0000 0.0000 0.4000 0.6938 0.4273 0.3637 0.0000 0.0000 5.0660 - 10.45 51.08 1964 0.0000 0.0000 0.3775 1.0470 0.5650 0.0891 0.1756 0.3037 0.0000 0.0000 0.0062 0.0048 0.0287 0.0000 0.4278 0.0000 0.0000 0.3931 0.6611 0.3836 0.3573 0.0000 0.0000 4.8205 - 10.45 51.08 1965 0.0000 0.0000 0.3742 1.1641 0.5738 0.0798 0.1873 0.3189 0.0000 0.0000 0.0045 0.0036 0.0260 0.0000 0.3628 0.0000 0.0000 0.4127 0.6753 0.3697 0.3564 0.0000 0.0000 4.9092 - 10.45 51.08 1966 0.0000 0.0000 0.3450 1.3058 0.6065 0.0719 0.2023 0.3381 0.0000 0.0000 0.0023 0.0019 0.0221 0.0000 0.3606 0.0000 0.0000 0.4375 0.6960 0.3869 0.3778 0.0000 0.0000 5.1546 - 10.45 51.08 1967 0.0000 0.0000 0.2855 1.4334 0.6195 0.0647 0.2130 0.3481 0.0000 0.0000 0.0000 0.0015 0.0185 0.0000 0.3197 0.0000 0.0000 0.4300 0.7166 0.3902 0.3890 0.0000 0.0000 5.2297 - 10.45 51.08 1968 0.0000 0.0000 0.2491 1.5278 0.6179 0.0533 0.2185 0.3489 0.0000 0.0000 0.0000 0.0007 0.0115 0.0000 0.2947 0.0000 0.0000 0.4309 0.7182 0.3644 0.3899 0.0000 0.0000 5.2258 - 10.45 51.08 1969 0.0000 0.0000 0.2281 1.5661 0.6172 0.0435 0.2243 0.3502 0.0000 0.0000 0.0000 0.0004 0.0039 0.0000 0.2459 0.0000 0.0000 0.4326 0.6592 0.3521 0.3914 0.0000 0.0000 5.1148 - 10.45 51.08 1970 0.0000 0.0000 0.2202 1.6584 0.6144 0.0353 0.2301 0.3509 0.0000 0.0000 0.0000 0.0002 0.0000 0.0000 0.2231 0.0000 0.0000 0.4334 0.6398 0.3268 0.3921 0.0000 0.0000 5.1248 - 10.45 51.08 1971 0.0000 0.0000 0.1968 1.5800 0.5694 0.0208 0.2214 0.3283 0.0000 0.0000 0.0000 0.0001 0.0000 0.0000 0.1675 0.0000 0.0000 0.3862 0.5793 0.2793 0.3669 0.0000 0.0000 4.6960 - 10.45 51.08 1972 0.0000 0.0000 0.1822 1.7227 0.5592 0.0163 0.2310 0.3351 0.0000 0.0000 0.0000 0.0001 0.0000 0.0000 0.1630 0.0000 0.0000 0.3745 0.5716 0.2634 0.3745 0.0000 0.0000 4.7937 - 10.45 51.08 1973 0.0000 0.0000 0.1421 1.7065 0.5067 0.0086 0.2234 0.3151 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.1446 0.0000 0.0000 0.3522 0.5190 0.2355 0.3522 0.0000 0.0000 4.5058 - 10.45 51.08 1974 0.0000 0.0000 0.1416 1.8708 0.5191 0.0024 0.2350 0.3247 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.1090 0.0000 0.0000 0.3629 0.5347 0.2134 0.3629 0.0000 0.0000 4.6764 - 10.45 51.08 1975 0.0000 0.0000 0.1156 1.9495 0.4770 0.0000 0.2376 0.3030 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0942 0.0000 0.0000 0.3598 0.5113 0.1911 0.3409 0.0000 0.0000 4.5799 - 10.45 51.08 1976 0.0000 0.0000 0.0808 1.8409 0.4047 0.0000 0.2182 0.2518 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0650 0.0000 0.0000 0.3189 0.4532 0.1614 0.3021 0.0000 0.0000 4.0970 - 10.45 51.08 1977 0.0000 0.0000 0.0556 1.9164 0.4110 0.0000 0.2279 0.2571 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0632 0.0000 0.0000 0.3085 0.4456 0.1503 0.2742 0.0000 0.0000 4.1098 - 10.45 51.08 1978 0.0000 0.0000 0.0544 2.0505 0.4140 0.0000 0.2366 0.2610 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0551 0.0000 0.0000 0.2958 0.4524 0.1386 0.2784 0.0000 0.0000 4.2367 - 10.45 51.08 1979 0.0000 0.0000 0.0373 2.1397 0.4103 0.0000 0.2411 0.2598 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0523 0.0000 0.0000 0.2945 0.4330 0.1257 0.2771 0.0000 0.0000 4.2708 - 10.45 51.08 1980 0.0000 0.0000 0.0354 2.2313 0.4031 0.0000 0.2454 0.2565 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0434 0.0000 0.0000 0.2736 0.3932 0.1038 0.2565 0.0000 0.0000 4.2422 - 10.45 51.08 1981 0.0000 0.0000 0.0274 2.3702 0.3877 0.0000 0.2525 0.2576 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0260 0.0000 0.0000 0.2748 0.3779 0.1010 0.2576 0.0000 0.0000 4.3327 - 10.45 51.08 1982 0.0000 0.0000 0.0174 2.1686 0.3429 0.0000 0.2354 0.2297 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0130 0.0000 0.0000 0.2297 0.3368 0.0796 0.2297 0.0000 0.0000 3.8827 - 10.45 51.08 1983 0.0000 0.0000 0.0167 2.2594 0.3254 0.0000 0.2415 0.2283 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0124 0.0000 0.0000 0.2283 0.3348 0.0759 0.2283 0.0000 0.0000 3.9507 - 10.45 51.08 1984 0.0000 0.0000 0.0157 2.3243 0.3045 0.0000 0.2436 0.2239 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0077 0.0000 0.0000 0.2090 0.3135 0.0663 0.2239 0.0000 0.0000 3.9324 - 10.45 51.08 1985 0.0000 0.0000 0.0150 2.3346 0.3014 0.0000 0.2507 0.1930 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0073 0.0000 0.0000 0.1930 0.3118 0.0639 0.2227 0.0000 0.0000 3.8933 - 10.45 51.08 1986 0.0000 0.0000 0.0146 2.3591 0.3025 0.0000 0.2593 0.1944 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0070 0.0000 0.0000 0.1944 0.2991 0.0624 0.2243 0.0000 0.0000 3.9170 - 10.45 51.08 1987 0.0000 0.0000 0.0139 2.3779 0.2983 0.0000 0.2657 0.1928 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0066 0.0000 0.0000 0.1928 0.2966 0.0600 0.2225 0.0000 0.0000 3.9271 - 10.45 51.08 1988 0.0000 0.0000 0.0131 2.4422 0.2783 0.0000 0.2704 0.1888 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0061 0.0000 0.0000 0.1888 0.2905 0.0570 0.2179 0.0000 0.0000 3.9532 - 10.45 51.08 1989 0.0000 0.0000 0.0079 2.4382 0.2619 0.0000 0.2659 0.1652 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0028 0.0000 0.0000 0.1789 0.2753 0.0525 0.2065 0.0000 0.0000 3.8551 - 10.45 51.08 1990 0.0000 0.0000 0.0077 2.5631 0.2600 0.0000 0.2745 0.1649 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0027 0.0000 0.0000 0.1786 0.2748 0.0473 0.2061 0.0000 0.0000 3.9797 - 10.45 51.08 1991 0.0000 0.0000 0.0068 2.5166 0.2166 0.0000 0.2617 0.1515 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0024 0.0000 0.0000 0.1642 0.2399 0.0421 0.1894 0.0000 0.0000 3.7911 - 10.45 51.08 1992 0.0000 0.0000 0.0062 2.5298 0.1954 0.0000 0.2607 0.1448 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0021 0.0000 0.0000 0.1448 0.2293 0.0388 0.1810 0.0000 0.0000 3.7328 - 10.45 51.08 1993 0.0000 0.0000 0.0060 2.6547 0.1970 0.0000 0.2704 0.1466 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0021 0.0000 0.0000 0.1466 0.2199 0.0315 0.1833 0.0000 0.0000 3.8582 - 10.45 51.08 1994 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 - 10.45 51.08 1995 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 - 10.45 51.08 1996 0.0000 0.0191 0.0761 0.0685 0.0532 0.0302 0.0167 0.0717 0.0000 0.0000 0.0059 0.0234 0.0249 0.0000 0.0530 0.0000 0.0000 0.0400 0.0500 0.0548 0.0450 2.4087 0.0000 3.0414 - 10.45 51.08 1997 0.0000 0.0295 0.1504 0.1427 0.1057 0.0588 0.0334 0.1443 0.0000 0.0000 0.0109 0.0402 0.0423 0.0000 0.1033 0.0000 0.0000 0.0798 0.0997 0.1065 0.0898 2.7717 0.0000 4.0091 - 10.45 51.08 1998 0.0000 0.0391 0.2584 0.2393 0.1831 0.0957 0.0628 0.2512 0.0000 0.0000 0.0162 0.0588 0.0620 0.0000 0.1758 0.0000 0.0000 0.1382 0.1739 0.1830 0.1555 0.8727 0.0000 2.9657 - 10.45 51.08 1999 0.0000 0.0472 0.3953 0.3767 0.2825 0.1384 0.0989 0.3882 0.0000 0.0000 0.0222 0.0792 0.0814 0.0000 0.2691 0.0000 0.0000 0.2135 0.2686 0.2828 0.2401 0.3097 0.0000 3.4938 - 10.45 51.08 2000 0.0000 0.0504 0.5147 0.5047 0.3721 0.1718 0.1314 0.5112 0.0000 0.0000 0.0262 0.0913 0.0940 0.0000 0.3493 0.0000 0.0000 0.2813 0.3539 0.3699 0.3164 0.0000 0.0000 4.1385 - 10.45 51.08 2001 0.0000 0.0468 0.6067 0.6221 0.4442 0.1931 0.1578 0.6125 0.0000 0.0000 0.0270 0.0901 0.0962 0.0000 0.4113 0.0000 0.0000 0.3373 0.4241 0.4397 0.3795 0.0000 0.0000 4.8885 - 10.45 51.08 2002 0.0000 0.0417 0.6584 0.7198 0.4907 0.1998 0.1756 0.6771 0.0000 0.0000 0.0262 0.0832 0.0933 0.0000 0.4449 0.0000 0.0000 0.3734 0.4691 0.4824 0.4200 0.0000 0.0000 5.3556 - 10.45 51.08 2003 0.0000 0.0379 0.6676 0.7609 0.5174 0.1948 0.1866 0.7153 0.0000 0.0000 0.0248 0.0756 0.0883 0.0000 0.4403 0.0000 0.0000 0.3950 0.4958 0.4924 0.4443 0.0000 0.0000 5.5369 - 10.45 51.08 2004 0.0000 0.0278 0.6823 0.8302 0.5392 0.1877 0.1963 0.7434 0.0000 0.0000 0.0225 0.0596 0.0794 0.0000 0.4463 0.0000 0.0000 0.4120 0.5168 0.5070 0.4635 0.0000 0.0000 5.7139 - 10.45 51.08 2005 0.0000 0.0165 0.6653 0.9060 0.5622 0.1768 0.2059 0.7762 0.0000 0.0000 0.0203 0.0454 0.0688 0.0000 0.4210 0.0000 0.0000 0.4305 0.5396 0.5189 0.4843 0.0000 0.0000 5.8378 - 10.45 51.08 2006 0.0000 0.0099 0.6340 0.9649 0.5570 0.1493 0.2110 0.7765 0.0000 0.0000 0.0158 0.0275 0.0582 0.0000 0.4209 0.0000 0.0000 0.4412 0.5523 0.5266 0.4964 0.0000 0.0000 5.8415 - 10.45 51.08 2007 0.0000 0.0034 0.6433 1.0772 0.5854 0.1335 0.2229 0.8349 0.0000 0.0000 0.0145 0.0202 0.0533 0.0000 0.4362 0.0000 0.0000 0.4748 0.5740 0.5454 0.5341 0.0000 0.0000 6.1531 - 10.45 51.08 2008 0.0000 0.0016 0.5639 1.1064 0.5678 0.1089 0.2202 0.7894 0.0000 0.0000 0.0094 0.0068 0.0438 0.0000 0.3946 0.0000 0.0000 0.4621 0.5584 0.4970 0.5006 0.0000 0.0000 5.8310 - 10.45 51.08 2009 0.0000 0.0000 0.5473 1.1269 0.5627 0.0936 0.2230 0.7855 0.0000 0.0000 0.0059 0.0046 0.0332 0.0000 0.3674 0.0000 0.0000 0.4598 0.5556 0.4720 0.4981 0.0000 0.0000 5.7356 - 10.45 51.08 2010 0.0000 0.0000 0.5165 1.2328 0.5729 0.0755 0.2314 0.7844 0.0000 0.0000 0.0024 0.0035 0.0246 0.0000 0.3488 0.0000 0.0000 0.4706 0.5687 0.4695 0.4902 0.0000 0.0000 5.7916 - 10.45 51.08 2011 0.0000 0.0000 0.5031 1.3146 0.5700 0.0614 0.2357 0.7658 0.0000 0.0000 0.0000 0.0024 0.0148 0.0000 0.3098 0.0000 0.0000 0.4713 0.5695 0.4237 0.4909 0.0000 0.0000 5.7329 - 10.45 51.08 2012 0.0000 0.0000 0.4026 1.3131 0.5461 0.0376 0.2315 0.7389 0.0000 0.0000 0.0000 0.0010 0.0047 0.0000 0.2514 0.0000 0.0000 0.4547 0.5494 0.3694 0.4736 0.0000 0.0000 5.3740 diff --git a/rLPJGUESS/inst/extdata/outputsForTests/run_nyear_spinup/outDirectory/maet.out b/rLPJGUESS/inst/extdata/outputsForTests/run_nyear_spinup/outDirectory/maet.out deleted file mode 100644 index a19156d..0000000 --- a/rLPJGUESS/inst/extdata/outputsForTests/run_nyear_spinup/outDirectory/maet.out +++ /dev/null @@ -1,63 +0,0 @@ - Lon Lat Year Jan Feb Mar Apr May Jun Jul Aug Sep Oct Nov Dec - 10.45 51.08 1951 0.158 0.572 5.246 39.026 52.955 71.875 81.409 62.180 40.051 15.456 2.616 0.301 - 10.45 51.08 1952 0.060 0.018 2.780 40.833 64.288 81.034 51.873 47.761 23.521 11.285 0.910 0.005 - 10.45 51.08 1953 0.014 0.478 9.130 40.614 59.205 48.908 62.122 54.703 35.022 14.774 0.983 0.066 - 10.45 51.08 1954 0.015 0.030 3.187 20.622 66.087 69.728 47.755 53.572 33.904 15.609 3.533 0.029 - 10.45 51.08 1955 0.014 0.029 2.566 26.148 64.273 70.177 59.505 52.487 37.828 16.538 2.909 0.026 - 10.45 51.08 1956 0.063 0.003 2.069 18.642 78.977 55.744 68.913 60.581 43.667 16.286 1.606 0.028 - 10.45 51.08 1957 0.093 0.896 17.014 45.059 67.267 93.567 81.099 68.510 34.670 17.527 0.104 0.011 - 10.45 51.08 1958 0.011 1.516 2.525 21.554 73.759 81.461 95.346 83.400 51.870 20.159 1.902 0.016 - 10.45 51.08 1959 0.015 0.305 13.412 52.178 84.471 96.033 69.216 67.956 2.918 3.703 0.135 0.011 - 10.45 51.08 1960 0.009 0.066 5.122 29.656 71.836 111.105 78.465 62.223 38.880 15.506 3.442 0.006 - 10.45 51.08 1961 0.003 0.664 13.367 34.629 55.272 96.442 82.319 74.057 53.439 21.815 0.012 0.005 - 10.45 51.08 1962 0.006 0.091 1.115 26.681 57.857 89.474 81.692 40.038 37.208 3.538 3.215 0.001 - 10.45 51.08 1963 0.000 0.001 1.635 25.990 80.227 80.923 69.623 61.544 49.247 17.329 3.926 0.001 - 10.45 51.08 1964 0.000 0.003 0.236 25.445 90.847 113.760 72.069 43.778 26.949 10.595 0.754 0.011 - 10.45 51.08 1965 0.069 0.000 1.357 22.213 66.498 86.566 80.036 81.821 44.445 20.499 1.577 0.001 - 10.45 51.08 1966 0.006 2.783 6.918 33.950 91.546 96.793 73.100 73.324 44.766 21.478 0.360 0.000 - 10.45 51.08 1967 0.003 1.116 11.744 27.427 88.488 82.419 120.166 70.198 39.739 23.674 3.522 0.000 - 10.45 51.08 1968 0.000 0.016 6.716 45.218 69.175 94.666 90.393 52.393 39.337 16.998 2.419 0.000 - 10.45 51.08 1969 0.000 0.000 0.000 14.264 76.052 93.196 107.118 60.193 50.947 22.675 5.464 0.000 - 10.45 51.08 1970 0.000 0.000 0.387 11.196 62.190 105.010 95.410 67.182 55.340 13.379 4.118 0.128 - 10.45 51.08 1971 0.000 0.003 1.105 29.460 79.203 73.292 100.659 42.859 22.927 15.481 3.953 0.000 - 10.45 51.08 1972 0.001 0.000 6.415 27.503 64.737 91.700 81.734 65.644 39.135 18.832 3.916 0.000 - 10.45 51.08 1973 0.000 0.000 2.475 11.729 75.202 91.377 68.095 23.160 40.837 17.695 3.016 0.000 - 10.45 51.08 1974 0.009 0.684 11.366 45.433 63.938 77.632 77.308 74.757 50.918 9.739 0.000 0.006 - 10.45 51.08 1975 0.000 0.005 1.665 23.431 72.480 75.505 102.400 71.879 49.546 14.782 2.898 0.000 - 10.45 51.08 1976 0.000 0.001 0.835 28.609 84.743 90.862 25.063 29.609 13.386 18.748 3.453 0.000 - 10.45 51.08 1977 0.000 0.082 9.575 26.378 76.335 60.289 79.997 50.584 37.701 18.479 2.520 0.000 - 10.45 51.08 1978 0.000 0.101 5.557 27.910 57.845 78.154 77.872 66.160 32.793 18.815 2.261 0.001 - 10.45 51.08 1979 0.004 0.000 0.372 13.537 64.996 85.798 68.424 70.592 45.139 20.901 1.806 0.005 - 10.45 51.08 1980 0.010 0.003 0.988 14.724 69.827 81.024 64.310 75.155 45.390 18.361 0.411 0.035 - 10.45 51.08 1981 0.073 0.002 13.058 40.182 69.372 76.431 72.348 65.341 44.379 17.154 0.218 0.000 - 10.45 51.08 1982 0.000 0.000 0.845 26.783 73.718 77.310 77.680 51.562 8.677 11.835 6.608 0.000 - 10.45 51.08 1983 0.000 0.021 4.833 30.943 54.446 87.656 92.409 70.580 31.060 17.161 1.262 0.000 - 10.45 51.08 1984 0.000 0.000 0.211 17.094 41.925 69.511 75.042 66.694 32.050 16.843 4.452 0.000 - 10.45 51.08 1985 0.000 0.001 0.390 30.199 70.606 68.348 94.239 70.479 45.178 8.251 1.649 0.004 - 10.45 51.08 1986 0.008 0.000 1.197 11.342 71.193 84.941 84.718 69.093 35.956 21.806 5.771 0.000 - 10.45 51.08 1987 0.000 0.000 0.457 30.873 56.651 57.126 84.067 59.419 39.389 19.327 2.507 0.000 - 10.45 51.08 1988 0.000 0.000 0.657 25.983 80.254 62.206 87.093 81.446 34.760 10.037 2.811 0.000 - 10.45 51.08 1989 0.001 0.077 11.151 27.291 94.841 87.594 46.947 34.128 24.917 20.819 1.526 0.000 - 10.45 51.08 1990 0.000 2.694 21.340 36.734 91.363 66.270 89.842 36.072 31.316 19.154 0.000 0.000 - 10.45 51.08 1991 0.000 0.001 10.366 38.629 53.137 74.526 44.552 71.148 27.657 12.420 1.449 0.000 - 10.45 51.08 1992 0.000 0.092 4.709 27.744 85.807 67.595 80.401 51.263 42.188 11.558 0.693 0.000 - 10.45 51.08 1993 0.002 0.103 8.520 46.668 71.972 76.647 75.364 70.773 32.323 14.716 0.396 0.000 - 10.45 51.08 1994 0.000 0.037 8.688 32.675 70.874 87.927 106.540 71.332 39.489 16.744 3.713 0.000 - 10.45 51.08 1995 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1996 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1997 0.005 1.181 12.003 31.551 58.541 49.534 43.160 65.916 40.189 9.048 1.002 0.123 - 10.45 51.08 1998 0.388 2.618 11.814 34.183 75.210 74.622 61.955 37.693 25.819 7.384 0.655 0.138 - 10.45 51.08 1999 0.253 0.587 6.790 27.827 62.187 61.502 68.041 55.316 43.515 10.967 1.661 0.107 - 10.45 51.08 2000 0.048 0.984 6.669 33.477 69.697 66.058 42.586 61.793 28.944 14.596 1.586 0.124 - 10.45 51.08 2001 0.020 0.447 3.555 21.076 73.359 54.846 78.659 62.552 22.515 18.594 1.588 0.009 - 10.45 51.08 2002 0.195 3.154 12.294 31.493 58.796 77.497 64.971 60.680 38.629 8.836 0.048 0.008 - 10.45 51.08 2003 0.015 0.019 7.007 37.408 71.942 108.623 74.927 47.612 46.173 11.401 1.083 0.010 - 10.45 51.08 2004 0.008 0.830 13.038 48.345 61.610 82.348 82.114 58.391 14.839 22.178 0.029 0.006 - 10.45 51.08 2005 0.013 0.007 7.809 45.306 82.783 74.712 60.629 65.612 45.513 26.040 3.662 0.005 - 10.45 51.08 2006 0.002 0.009 2.065 33.473 88.091 108.248 77.368 54.240 51.212 21.422 3.824 0.011 - 10.45 51.08 2007 0.009 0.203 8.133 69.776 79.681 97.757 84.865 78.504 40.881 18.791 1.142 0.003 - 10.45 51.08 2008 0.102 2.807 10.820 32.529 99.012 96.018 87.749 38.862 20.776 17.973 0.750 0.001 - 10.45 51.08 2009 0.001 0.002 1.431 56.169 81.649 73.634 95.550 54.649 35.277 12.180 1.000 0.001 - 10.45 51.08 2010 0.000 0.002 8.617 53.054 50.813 102.483 99.227 59.400 41.334 20.636 2.107 0.000 - 10.45 51.08 2011 0.002 0.315 14.419 68.269 80.174 88.098 79.979 57.417 36.712 12.691 0.480 0.000 - 10.45 51.08 2012 0.000 0.012 19.002 36.208 81.177 73.456 85.475 58.157 21.104 19.019 1.606 0.000 diff --git a/rLPJGUESS/inst/extdata/outputsForTests/run_nyear_spinup/outDirectory/mevap.out b/rLPJGUESS/inst/extdata/outputsForTests/run_nyear_spinup/outDirectory/mevap.out deleted file mode 100644 index 003c4eb..0000000 --- a/rLPJGUESS/inst/extdata/outputsForTests/run_nyear_spinup/outDirectory/mevap.out +++ /dev/null @@ -1,63 +0,0 @@ - Lon Lat Year Jan Feb Mar Apr May Jun Jul Aug Sep Oct Nov Dec - 10.45 51.08 1951 6.664 12.864 19.385 10.154 0.370 6.923 3.157 3.323 1.341 0.388 1.445 4.386 - 10.45 51.08 1952 4.186 3.207 24.985 17.795 2.565 1.008 0.037 0.126 1.566 1.286 4.328 3.777 - 10.45 51.08 1953 0.141 5.003 21.316 6.438 2.329 9.060 16.888 6.755 1.025 0.782 2.771 2.138 - 10.45 51.08 1954 4.099 9.459 19.413 20.807 6.133 0.939 7.453 9.172 4.833 4.094 2.566 4.963 - 10.45 51.08 1955 0.688 5.706 9.214 23.213 2.785 1.034 3.056 5.105 2.285 0.959 2.446 5.481 - 10.45 51.08 1956 6.102 0.000 20.738 23.166 6.138 0.000 0.000 0.000 0.000 0.000 2.002 3.972 - 10.45 51.08 1957 6.479 11.529 16.134 5.037 0.000 0.000 0.000 0.000 0.000 0.423 9.120 4.661 - 10.45 51.08 1958 7.185 10.023 9.889 20.209 2.709 0.000 0.000 0.000 0.000 0.000 2.843 5.454 - 10.45 51.08 1959 7.404 9.338 11.746 3.681 0.000 0.000 0.000 0.000 0.000 0.033 6.148 4.049 - 10.45 51.08 1960 4.574 10.924 15.848 10.259 2.386 0.000 0.000 0.000 0.000 0.000 3.062 2.264 - 10.45 51.08 1961 1.363 14.795 12.385 6.224 0.000 0.000 0.000 0.000 0.000 0.003 1.095 3.606 - 10.45 51.08 1962 7.287 11.584 9.022 21.682 1.162 0.000 0.000 0.000 0.000 0.000 0.005 0.781 - 10.45 51.08 1963 0.000 0.000 19.185 21.352 1.794 0.000 0.000 0.000 0.000 0.000 1.815 3.943 - 10.45 51.08 1964 3.116 11.367 14.095 20.031 1.842 0.000 0.000 0.000 0.000 0.000 1.353 1.854 - 10.45 51.08 1965 4.492 0.000 13.953 18.612 8.751 0.000 0.000 0.000 0.000 0.000 0.144 4.640 - 10.45 51.08 1966 4.341 9.190 15.183 13.211 0.139 0.000 0.000 0.000 0.000 0.000 6.722 5.657 - 10.45 51.08 1967 6.541 10.805 18.105 13.409 2.743 0.000 0.000 0.000 0.000 0.000 1.758 3.998 - 10.45 51.08 1968 4.543 11.697 24.450 7.313 0.000 0.000 0.000 0.000 0.000 0.000 3.936 2.861 - 10.45 51.08 1969 4.998 3.017 0.000 28.047 7.200 0.000 0.000 0.000 0.000 0.000 0.234 1.381 - 10.45 51.08 1970 0.000 2.549 14.046 31.829 7.175 0.000 0.000 0.000 0.000 0.000 0.000 4.849 - 10.45 51.08 1971 3.494 9.322 14.114 11.878 2.776 0.000 0.000 0.000 0.000 0.000 1.874 5.428 - 10.45 51.08 1972 3.680 7.822 25.254 12.449 1.270 0.000 0.000 0.000 0.000 0.000 2.162 5.301 - 10.45 51.08 1973 5.320 9.820 22.574 16.764 6.052 0.000 0.000 0.000 0.000 0.000 3.686 5.598 - 10.45 51.08 1974 7.056 9.911 18.536 5.708 0.083 0.000 0.000 0.000 0.000 0.000 9.107 6.755 - 10.45 51.08 1975 8.082 11.156 20.628 25.350 2.614 0.000 0.000 0.000 0.000 0.000 0.943 1.704 - 10.45 51.08 1976 6.191 10.128 14.848 11.055 1.316 0.000 0.000 0.000 0.000 0.000 0.879 2.604 - 10.45 51.08 1977 3.588 9.332 18.284 14.394 1.287 0.000 0.000 0.000 0.000 0.000 6.137 5.743 - 10.45 51.08 1978 6.117 5.484 17.634 10.991 2.093 0.000 0.000 0.000 0.000 0.000 3.233 4.013 - 10.45 51.08 1979 0.000 0.000 17.953 28.663 10.532 0.000 0.000 0.000 0.000 0.000 3.202 5.686 - 10.45 51.08 1980 5.183 11.242 11.995 18.200 11.021 0.000 0.000 0.000 0.000 0.000 2.445 3.328 - 10.45 51.08 1981 2.229 8.676 21.642 5.140 0.376 0.000 0.000 0.000 0.000 0.000 10.058 1.953 - 10.45 51.08 1982 5.971 11.363 17.188 10.870 4.740 0.000 0.000 0.000 0.000 0.000 0.117 2.058 - 10.45 51.08 1983 3.751 5.707 13.362 28.646 1.139 0.000 0.000 0.000 0.000 0.000 0.048 0.527 - 10.45 51.08 1984 2.414 8.598 17.320 32.141 8.246 0.000 0.000 0.000 0.000 0.000 3.016 5.827 - 10.45 51.08 1985 2.474 10.296 15.276 15.009 1.779 0.000 0.000 0.000 0.000 0.000 0.029 2.228 - 10.45 51.08 1986 6.143 3.711 21.789 29.557 5.467 0.000 0.000 0.000 0.000 0.000 0.934 4.506 - 10.45 51.08 1987 1.809 4.311 7.278 21.592 1.726 0.000 0.000 0.000 0.000 0.000 1.822 5.621 - 10.45 51.08 1988 7.867 8.281 11.071 26.418 1.439 0.000 0.000 0.000 0.000 0.000 0.246 4.371 - 10.45 51.08 1989 8.225 9.384 21.832 7.627 1.520 0.000 0.000 0.000 0.000 0.000 6.063 6.026 - 10.45 51.08 1990 7.504 13.513 15.563 5.137 0.019 0.000 0.000 0.000 0.000 0.067 2.217 3.483 - 10.45 51.08 1991 5.314 7.043 13.587 4.649 0.754 0.000 0.000 0.000 0.000 0.000 0.323 1.229 - 10.45 51.08 1992 3.960 7.489 18.592 22.730 1.744 0.000 0.000 0.000 0.000 0.000 4.990 6.041 - 10.45 51.08 1993 7.224 3.577 18.227 9.228 0.000 0.000 0.000 0.000 0.000 0.000 5.641 6.048 - 10.45 51.08 1994 7.843 9.811 23.650 19.094 0.276 0.000 0.000 0.000 0.000 0.000 5.367 6.607 - 10.45 51.08 1995 7.469 14.592 18.759 28.413 42.174 55.130 63.999 37.385 32.198 20.166 5.217 2.833 - 10.45 51.08 1996 4.056 9.822 14.728 19.990 28.614 37.427 34.360 31.723 15.795 9.588 5.007 4.864 - 10.45 51.08 1997 5.930 13.970 16.854 10.909 2.670 0.186 5.950 3.711 0.723 0.752 3.101 3.417 - 10.45 51.08 1998 6.055 8.744 8.697 1.073 0.000 0.000 0.007 0.005 0.000 0.793 3.737 5.285 - 10.45 51.08 1999 6.637 9.385 17.482 11.917 3.251 6.692 12.243 3.252 0.914 0.296 3.694 5.396 - 10.45 51.08 2000 6.957 14.508 23.014 17.793 3.451 0.400 1.643 2.466 4.440 3.544 4.156 3.255 - 10.45 51.08 2001 4.083 8.625 15.380 22.893 8.465 4.476 10.500 1.312 1.491 2.044 5.082 5.010 - 10.45 51.08 2002 7.230 10.738 15.633 10.301 1.645 1.599 1.243 1.604 0.629 7.645 10.314 4.055 - 10.45 51.08 2003 7.117 10.650 22.140 9.133 0.043 0.000 0.000 0.000 0.000 0.000 2.901 4.388 - 10.45 51.08 2004 5.699 9.757 12.410 4.723 0.000 0.000 0.000 0.000 0.000 0.009 2.355 3.648 - 10.45 51.08 2005 5.802 9.246 16.485 10.225 0.000 0.000 0.000 0.000 0.000 0.000 0.681 1.687 - 10.45 51.08 2006 2.740 5.034 11.274 17.119 0.950 0.000 0.000 0.000 0.000 0.000 1.167 2.228 - 10.45 51.08 2007 5.077 9.784 19.545 8.829 0.000 0.000 0.000 0.000 0.000 0.000 5.408 5.490 - 10.45 51.08 2008 7.573 9.717 14.480 14.175 0.067 0.000 0.000 0.000 0.000 0.000 4.214 5.043 - 10.45 51.08 2009 5.558 9.071 20.294 10.936 0.000 0.000 0.000 0.000 0.000 0.000 7.166 5.432 - 10.45 51.08 2010 0.000 2.893 21.061 6.475 0.000 0.000 0.000 0.000 0.000 0.000 6.312 0.000 - 10.45 51.08 2011 4.849 10.430 17.765 3.255 0.000 0.000 0.000 0.000 0.000 0.008 0.949 1.928 - 10.45 51.08 2012 6.565 9.391 14.296 2.734 0.000 0.000 0.000 0.000 0.000 0.000 0.844 4.377 diff --git a/rLPJGUESS/inst/extdata/outputsForTests/run_nyear_spinup/outDirectory/mgpp.out b/rLPJGUESS/inst/extdata/outputsForTests/run_nyear_spinup/outDirectory/mgpp.out deleted file mode 100644 index d5ea688..0000000 --- a/rLPJGUESS/inst/extdata/outputsForTests/run_nyear_spinup/outDirectory/mgpp.out +++ /dev/null @@ -1,63 +0,0 @@ - Lon Lat Year Jan Feb Mar Apr May Jun Jul Aug Sep Oct Nov Dec - 10.45 51.08 1951 0.001 0.002 0.012 0.101 0.151 0.195 0.189 0.142 0.094 0.042 0.010 0.001 - 10.45 51.08 1952 0.001 0.001 0.009 0.101 0.183 0.204 0.129 0.118 0.082 0.044 0.006 0.001 - 10.45 51.08 1953 0.001 0.003 0.030 0.138 0.186 0.176 0.195 0.178 0.130 0.069 0.008 0.002 - 10.45 51.08 1954 0.001 0.001 0.016 0.056 0.216 0.221 0.188 0.180 0.124 0.076 0.019 0.003 - 10.45 51.08 1955 0.001 0.002 0.008 0.059 0.210 0.227 0.193 0.168 0.136 0.071 0.014 0.002 - 10.45 51.08 1956 0.002 0.000 0.012 0.050 0.228 0.202 0.220 0.202 0.147 0.071 0.009 0.002 - 10.45 51.08 1957 0.002 0.006 0.049 0.127 0.205 0.246 0.206 0.200 0.127 0.072 0.005 0.001 - 10.45 51.08 1958 0.001 0.006 0.006 0.052 0.214 0.233 0.249 0.220 0.156 0.079 0.012 0.002 - 10.45 51.08 1959 0.001 0.002 0.036 0.142 0.243 0.253 0.169 0.175 0.010 0.020 0.004 0.001 - 10.45 51.08 1960 0.001 0.001 0.012 0.070 0.211 0.274 0.223 0.181 0.131 0.068 0.020 0.001 - 10.45 51.08 1961 0.000 0.004 0.032 0.120 0.187 0.255 0.215 0.199 0.143 0.080 0.002 0.001 - 10.45 51.08 1962 0.001 0.001 0.002 0.059 0.178 0.233 0.227 0.113 0.114 0.014 0.012 0.000 - 10.45 51.08 1963 0.000 0.000 0.004 0.065 0.221 0.233 0.176 0.183 0.148 0.067 0.025 0.000 - 10.45 51.08 1964 0.000 0.000 0.001 0.065 0.247 0.271 0.178 0.130 0.090 0.041 0.003 0.000 - 10.45 51.08 1965 0.001 0.000 0.003 0.049 0.188 0.241 0.219 0.223 0.147 0.070 0.008 0.000 - 10.45 51.08 1966 0.000 0.007 0.015 0.094 0.253 0.249 0.216 0.202 0.138 0.078 0.002 0.000 - 10.45 51.08 1967 0.000 0.003 0.024 0.063 0.233 0.231 0.271 0.187 0.131 0.088 0.015 0.000 - 10.45 51.08 1968 0.000 0.000 0.014 0.105 0.211 0.247 0.236 0.146 0.130 0.072 0.011 0.000 - 10.45 51.08 1969 0.000 0.000 0.000 0.032 0.211 0.253 0.244 0.174 0.154 0.085 0.027 0.000 - 10.45 51.08 1970 0.000 0.000 0.001 0.025 0.183 0.260 0.245 0.195 0.160 0.061 0.024 0.001 - 10.45 51.08 1971 0.000 0.000 0.002 0.068 0.204 0.219 0.244 0.092 0.074 0.057 0.018 0.000 - 10.45 51.08 1972 0.000 0.000 0.012 0.068 0.196 0.260 0.213 0.195 0.129 0.069 0.019 0.000 - 10.45 51.08 1973 0.000 0.000 0.004 0.024 0.205 0.238 0.187 0.064 0.126 0.070 0.014 0.000 - 10.45 51.08 1974 0.000 0.002 0.027 0.120 0.204 0.236 0.224 0.191 0.152 0.045 0.000 0.000 - 10.45 51.08 1975 0.000 0.000 0.004 0.052 0.208 0.225 0.244 0.176 0.143 0.059 0.013 0.000 - 10.45 51.08 1976 0.000 0.000 0.001 0.059 0.230 0.236 0.055 0.090 0.056 0.073 0.019 0.000 - 10.45 51.08 1977 0.000 0.000 0.026 0.067 0.236 0.188 0.223 0.163 0.125 0.078 0.017 0.000 - 10.45 51.08 1978 0.000 0.000 0.012 0.064 0.178 0.225 0.223 0.190 0.122 0.076 0.009 0.000 - 10.45 51.08 1979 0.000 0.000 0.001 0.033 0.170 0.229 0.209 0.199 0.144 0.077 0.013 0.000 - 10.45 51.08 1980 0.000 0.000 0.002 0.035 0.181 0.240 0.195 0.199 0.146 0.078 0.001 0.000 - 10.45 51.08 1981 0.000 0.000 0.033 0.117 0.210 0.218 0.203 0.188 0.145 0.073 0.002 0.000 - 10.45 51.08 1982 0.000 0.000 0.001 0.057 0.189 0.212 0.196 0.123 0.025 0.061 0.035 0.000 - 10.45 51.08 1983 0.000 0.000 0.011 0.085 0.195 0.242 0.223 0.178 0.106 0.067 0.006 0.000 - 10.45 51.08 1984 0.000 0.000 0.000 0.038 0.143 0.219 0.217 0.187 0.117 0.082 0.021 0.000 - 10.45 51.08 1985 0.000 0.000 0.001 0.072 0.201 0.220 0.249 0.203 0.146 0.028 0.009 0.000 - 10.45 51.08 1986 0.000 0.000 0.001 0.027 0.207 0.238 0.228 0.188 0.138 0.090 0.033 0.000 - 10.45 51.08 1987 0.000 0.000 0.001 0.069 0.198 0.204 0.231 0.186 0.136 0.083 0.019 0.000 - 10.45 51.08 1988 0.000 0.000 0.002 0.057 0.233 0.193 0.238 0.212 0.116 0.048 0.016 0.000 - 10.45 51.08 1989 0.000 0.000 0.023 0.085 0.277 0.257 0.125 0.102 0.085 0.091 0.013 0.000 - 10.45 51.08 1990 0.000 0.007 0.065 0.124 0.278 0.209 0.246 0.096 0.123 0.077 0.000 0.000 - 10.45 51.08 1991 0.000 0.000 0.026 0.114 0.188 0.240 0.109 0.190 0.078 0.050 0.008 0.000 - 10.45 51.08 1992 0.000 0.000 0.010 0.068 0.242 0.199 0.211 0.121 0.147 0.057 0.003 0.000 - 10.45 51.08 1993 0.000 0.000 0.020 0.122 0.218 0.226 0.222 0.202 0.124 0.065 0.002 0.000 - 10.45 51.08 1994 0.000 0.000 0.022 0.090 0.233 0.246 0.242 0.191 0.141 0.074 0.020 0.000 - 10.45 51.08 1995 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1996 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1997 0.000 0.004 0.036 0.101 0.180 0.154 0.129 0.156 0.113 0.025 0.003 0.000 - 10.45 51.08 1998 0.002 0.007 0.029 0.095 0.197 0.183 0.156 0.102 0.072 0.025 0.001 0.001 - 10.45 51.08 1999 0.002 0.002 0.017 0.088 0.202 0.199 0.187 0.160 0.123 0.045 0.009 0.001 - 10.45 51.08 2000 0.001 0.005 0.021 0.105 0.233 0.213 0.168 0.194 0.118 0.072 0.012 0.002 - 10.45 51.08 2001 0.002 0.004 0.013 0.070 0.261 0.220 0.255 0.193 0.112 0.090 0.012 0.001 - 10.45 51.08 2002 0.003 0.014 0.041 0.107 0.218 0.252 0.212 0.193 0.144 0.050 0.004 0.001 - 10.45 51.08 2003 0.002 0.001 0.024 0.111 0.240 0.306 0.221 0.120 0.164 0.048 0.010 0.001 - 10.45 51.08 2004 0.001 0.004 0.035 0.153 0.224 0.261 0.254 0.159 0.063 0.089 0.003 0.001 - 10.45 51.08 2005 0.002 0.001 0.022 0.134 0.237 0.233 0.183 0.205 0.154 0.105 0.022 0.001 - 10.45 51.08 2006 0.000 0.001 0.007 0.096 0.269 0.288 0.192 0.192 0.141 0.096 0.024 0.002 - 10.45 51.08 2007 0.002 0.003 0.027 0.185 0.255 0.273 0.247 0.230 0.150 0.072 0.010 0.001 - 10.45 51.08 2008 0.002 0.008 0.029 0.097 0.279 0.265 0.238 0.114 0.080 0.080 0.006 0.000 - 10.45 51.08 2009 0.000 0.000 0.004 0.163 0.256 0.234 0.252 0.136 0.120 0.056 0.010 0.000 - 10.45 51.08 2010 0.000 0.000 0.024 0.141 0.181 0.273 0.248 0.190 0.144 0.075 0.012 0.000 - 10.45 51.08 2011 0.000 0.001 0.031 0.196 0.242 0.255 0.230 0.168 0.114 0.056 0.004 0.000 - 10.45 51.08 2012 0.000 0.000 0.046 0.101 0.227 0.233 0.241 0.158 0.079 0.072 0.009 0.000 diff --git a/rLPJGUESS/inst/extdata/outputsForTests/run_nyear_spinup/outDirectory/mintercep.out b/rLPJGUESS/inst/extdata/outputsForTests/run_nyear_spinup/outDirectory/mintercep.out deleted file mode 100644 index ee8db28..0000000 --- a/rLPJGUESS/inst/extdata/outputsForTests/run_nyear_spinup/outDirectory/mintercep.out +++ /dev/null @@ -1,63 +0,0 @@ - Lon Lat Year Jan Feb Mar Apr May Jun Jul Aug Sep Oct Nov Dec - 10.45 51.08 1951 0.074 0.107 0.315 0.453 1.372 6.864 1.643 2.978 1.657 0.784 1.249 0.125 - 10.45 51.08 1952 0.155 0.120 0.612 1.369 3.757 1.998 0.925 2.136 5.887 3.159 2.062 0.095 - 10.45 51.08 1953 0.152 0.157 0.081 0.784 2.978 5.934 3.179 2.513 1.214 1.582 0.037 0.115 - 10.45 51.08 1954 0.192 0.189 0.219 1.519 1.907 3.536 8.669 5.717 3.422 3.338 0.972 0.179 - 10.45 51.08 1955 0.146 0.282 0.336 1.238 3.285 5.219 9.066 4.888 4.009 2.088 0.300 0.202 - 10.45 51.08 1956 0.171 0.183 0.266 2.127 3.050 11.924 15.103 7.156 2.037 4.436 1.677 0.137 - 10.45 51.08 1957 0.182 0.477 1.263 1.483 5.623 6.415 8.947 4.368 6.522 1.720 0.141 0.110 - 10.45 51.08 1958 0.154 0.821 1.397 1.348 7.604 7.038 7.140 7.813 5.162 3.831 1.977 0.139 - 10.45 51.08 1959 0.134 0.048 0.601 3.326 4.784 4.814 1.488 5.939 0.052 2.262 0.157 0.086 - 10.45 51.08 1960 0.144 0.076 0.243 1.533 5.740 2.517 4.124 6.420 4.792 5.798 1.932 0.089 - 10.45 51.08 1961 0.071 0.122 0.748 7.588 10.045 7.500 4.009 3.963 1.986 1.231 0.066 0.087 - 10.45 51.08 1962 0.068 0.093 0.148 0.785 4.310 1.343 6.094 2.733 2.817 0.667 0.355 0.053 - 10.45 51.08 1963 0.039 0.028 0.152 0.861 2.255 8.051 2.746 9.435 3.108 2.303 3.130 0.012 - 10.45 51.08 1964 0.017 0.035 0.058 1.693 5.319 3.486 3.781 4.664 2.161 2.017 0.162 0.037 - 10.45 51.08 1965 0.087 0.020 0.040 1.314 1.816 7.635 4.793 3.343 3.350 0.615 1.401 0.035 - 10.45 51.08 1966 0.021 0.151 0.497 2.217 4.076 7.146 7.882 6.703 1.441 3.862 0.493 0.027 - 10.45 51.08 1967 0.012 0.058 0.644 0.710 4.142 7.465 3.521 5.277 5.240 2.613 0.607 0.013 - 10.45 51.08 1968 0.008 0.021 0.049 3.664 3.019 5.229 3.234 4.773 4.941 3.432 0.887 0.005 - 10.45 51.08 1969 0.003 0.006 0.006 1.059 5.859 8.685 0.803 6.874 3.402 1.307 1.541 0.003 - 10.45 51.08 1970 0.001 0.001 0.008 0.479 4.838 3.947 3.216 9.943 1.504 4.747 2.462 0.163 - 10.45 51.08 1971 0.000 0.003 0.046 1.468 2.978 5.725 0.978 3.033 2.146 2.233 1.392 0.000 - 10.45 51.08 1972 0.002 0.000 0.127 0.858 4.456 5.666 8.582 7.192 1.759 1.553 0.940 0.000 - 10.45 51.08 1973 0.000 0.000 0.000 0.314 2.312 3.223 4.105 2.258 4.145 3.659 0.950 0.000 - 10.45 51.08 1974 0.003 0.163 0.319 0.705 3.833 6.008 4.446 3.781 1.792 4.364 0.000 0.012 - 10.45 51.08 1975 0.000 0.002 0.168 0.473 3.097 5.654 2.019 3.113 2.372 2.432 0.264 0.000 - 10.45 51.08 1976 0.000 0.000 0.011 0.478 2.420 4.277 1.937 2.354 2.748 1.593 1.274 0.000 - 10.45 51.08 1977 0.000 0.007 0.739 0.622 1.724 6.058 4.117 7.456 2.000 2.154 1.903 0.000 - 10.45 51.08 1978 0.000 0.000 0.106 0.320 3.377 1.459 3.301 3.846 3.877 1.700 0.000 0.008 - 10.45 51.08 1979 0.018 0.000 0.054 0.468 1.834 4.203 3.762 1.390 3.079 0.448 1.939 0.007 - 10.45 51.08 1980 0.020 0.000 0.018 0.804 1.357 3.761 3.342 1.088 2.922 1.863 0.337 0.033 - 10.45 51.08 1981 0.140 0.002 0.490 1.836 4.910 3.212 1.877 5.419 2.411 2.479 0.000 0.000 - 10.45 51.08 1982 0.000 0.000 0.008 0.382 1.399 2.493 3.405 0.985 0.623 2.815 0.709 0.000 - 10.45 51.08 1983 0.000 0.003 0.224 2.398 5.369 1.338 1.513 3.051 2.753 0.227 0.105 0.000 - 10.45 51.08 1984 0.000 0.000 0.000 0.148 6.066 2.691 3.580 4.162 3.236 3.290 0.142 0.000 - 10.45 51.08 1985 0.001 0.000 0.015 0.400 2.059 3.705 2.584 2.643 1.162 0.189 0.537 0.010 - 10.45 51.08 1986 0.014 0.000 0.028 0.442 4.573 2.620 2.550 3.311 3.108 1.496 0.314 0.000 - 10.45 51.08 1987 0.000 0.000 0.006 0.159 3.520 7.742 4.071 3.865 5.013 1.163 1.633 0.000 - 10.45 51.08 1988 0.000 0.000 0.042 0.302 1.254 4.206 3.587 1.048 1.432 0.864 1.139 0.000 - 10.45 51.08 1989 0.000 0.002 0.199 1.654 1.719 3.058 2.582 1.321 2.338 1.564 1.705 0.000 - 10.45 51.08 1990 0.000 0.234 0.608 2.052 0.701 5.142 1.161 2.137 2.740 0.485 0.000 0.000 - 10.45 51.08 1991 0.000 0.000 0.283 0.517 1.719 3.533 1.104 4.637 0.979 0.835 0.203 0.000 - 10.45 51.08 1992 0.000 0.002 0.555 0.288 1.182 4.096 4.448 1.653 1.933 2.542 0.179 0.000 - 10.45 51.08 1993 0.007 0.022 0.104 0.375 4.486 3.263 5.363 2.133 2.589 2.262 0.092 0.000 - 10.45 51.08 1994 0.000 0.001 0.378 1.833 4.896 2.358 4.274 4.744 2.329 1.417 0.469 0.000 - 10.45 51.08 1995 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1996 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1997 0.021 0.183 0.750 0.714 1.285 0.699 3.720 1.198 0.328 1.446 0.125 0.123 - 10.45 51.08 1998 0.111 0.147 0.779 1.887 1.800 2.472 3.148 1.144 3.399 3.598 1.294 0.035 - 10.45 51.08 1999 0.093 0.160 0.417 0.787 2.579 3.131 3.288 2.145 1.050 0.606 0.645 0.115 - 10.45 51.08 2000 0.135 0.378 1.142 1.323 1.615 2.415 3.622 3.610 3.804 1.849 0.402 0.079 - 10.45 51.08 2001 0.110 0.185 1.761 1.728 2.790 6.489 6.335 1.465 4.542 2.257 1.351 0.146 - 10.45 51.08 2002 0.107 1.271 2.319 2.492 7.077 6.879 7.804 6.898 3.797 3.457 0.277 0.171 - 10.45 51.08 2003 0.135 0.097 0.224 0.692 5.591 8.237 3.982 2.086 4.698 3.089 0.254 0.093 - 10.45 51.08 2004 0.105 0.141 0.546 3.129 9.959 4.527 7.406 3.106 3.534 1.020 0.153 0.051 - 10.45 51.08 2005 0.084 0.164 0.379 2.310 4.706 4.375 7.941 5.047 6.651 1.846 1.140 0.101 - 10.45 51.08 2006 0.052 0.107 0.312 2.767 4.978 6.821 5.238 10.126 1.002 4.428 2.090 0.043 - 10.45 51.08 2007 0.100 0.117 0.648 0.449 9.772 8.073 10.879 8.231 5.669 0.702 1.489 0.057 - 10.45 51.08 2008 0.084 0.169 1.536 3.691 1.699 5.833 5.988 3.073 4.172 5.343 0.081 0.038 - 10.45 51.08 2009 0.009 0.055 0.132 3.823 6.536 5.715 7.130 1.367 4.960 4.733 2.440 0.051 - 10.45 51.08 2010 0.021 0.022 0.400 0.698 8.900 1.149 11.123 11.874 3.660 1.166 0.843 0.031 - 10.45 51.08 2011 0.014 0.031 0.291 1.873 0.629 7.173 6.127 6.931 2.710 3.249 0.000 0.019 - 10.45 51.08 2012 0.011 0.002 0.051 0.694 3.479 10.284 8.712 3.839 2.791 1.861 0.536 0.008 diff --git a/rLPJGUESS/inst/extdata/outputsForTests/run_nyear_spinup/outDirectory/miso.out b/rLPJGUESS/inst/extdata/outputsForTests/run_nyear_spinup/outDirectory/miso.out deleted file mode 100644 index 8edc368..0000000 --- a/rLPJGUESS/inst/extdata/outputsForTests/run_nyear_spinup/outDirectory/miso.out +++ /dev/null @@ -1,63 +0,0 @@ - Lon Lat Year Jan Feb Mar Apr May Jun Jul Aug Sep Oct Nov Dec - 10.45 51.08 1951 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1952 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1953 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1954 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1955 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1956 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1957 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1958 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1959 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1960 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1961 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1962 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1963 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1964 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1965 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1966 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1967 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1968 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1969 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1970 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1971 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1972 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1973 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1974 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1975 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1976 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1977 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1978 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1979 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1980 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1981 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1982 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1983 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1984 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1985 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1986 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1987 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1988 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1989 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1990 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1991 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1992 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1993 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1994 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1995 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1996 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1997 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1998 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1999 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 2000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 2001 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 2002 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 2003 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 2004 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 2005 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 2006 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 2007 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 2008 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 2009 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 2010 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 2011 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 2012 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 diff --git a/rLPJGUESS/inst/extdata/outputsForTests/run_nyear_spinup/outDirectory/mlai.out b/rLPJGUESS/inst/extdata/outputsForTests/run_nyear_spinup/outDirectory/mlai.out deleted file mode 100644 index ee210f1..0000000 --- a/rLPJGUESS/inst/extdata/outputsForTests/run_nyear_spinup/outDirectory/mlai.out +++ /dev/null @@ -1,63 +0,0 @@ - Lon Lat Year Jan Feb Mar Apr May Jun Jul Aug Sep Oct Nov Dec - 10.45 51.08 1951 0.399 0.175 0.447 1.617 3.115 3.237 3.237 3.237 3.237 3.237 2.817 1.020 - 10.45 51.08 1952 0.226 0.219 0.385 2.078 3.504 3.504 2.909 3.207 3.504 3.504 1.681 0.219 - 10.45 51.08 1953 0.254 0.265 0.505 2.065 2.973 2.973 2.973 2.973 2.973 2.973 0.587 0.254 - 10.45 51.08 1954 0.296 0.296 0.404 1.217 3.296 3.970 3.970 3.970 3.970 3.970 3.195 0.296 - 10.45 51.08 1955 0.309 0.309 0.424 1.444 4.223 4.532 4.532 4.532 4.532 4.532 2.984 0.309 - 10.45 51.08 1956 0.297 0.293 0.350 1.249 4.024 4.877 4.877 4.877 4.877 4.877 3.196 0.294 - 10.45 51.08 1957 0.331 0.404 1.370 3.539 5.180 5.197 5.197 5.197 5.197 5.042 0.318 0.280 - 10.45 51.08 1958 0.253 0.591 1.105 1.604 4.734 5.442 5.442 5.442 5.442 5.442 3.003 0.253 - 10.45 51.08 1959 0.216 0.240 1.180 3.816 5.562 5.562 5.562 5.562 5.562 5.506 0.377 0.216 - 10.45 51.08 1960 0.152 0.155 0.536 1.837 4.435 5.216 5.216 5.216 5.216 5.216 3.342 0.152 - 10.45 51.08 1961 0.129 0.157 1.195 3.772 5.316 5.316 5.316 5.316 5.316 5.130 0.129 0.129 - 10.45 51.08 1962 0.103 0.127 0.200 1.222 4.613 5.431 5.431 5.431 5.431 5.431 2.767 0.103 - 10.45 51.08 1963 0.066 0.066 0.156 1.319 4.383 5.017 5.017 5.017 5.017 5.017 3.697 0.066 - 10.45 51.08 1964 0.055 0.055 0.069 1.140 4.601 5.063 5.063 5.063 5.063 5.063 1.224 0.111 - 10.45 51.08 1965 0.148 0.040 0.089 1.166 3.558 4.821 4.821 4.821 4.821 4.821 2.271 0.040 - 10.45 51.08 1966 0.053 0.337 1.008 2.251 4.824 4.909 4.909 4.909 4.909 4.909 0.929 0.034 - 10.45 51.08 1967 0.024 0.225 0.805 1.608 4.265 5.152 5.152 5.152 5.152 5.152 2.908 0.024 - 10.45 51.08 1968 0.020 0.028 0.234 2.550 5.204 5.230 5.230 5.230 5.230 5.230 1.867 0.020 - 10.45 51.08 1969 0.012 0.012 0.012 0.822 4.254 5.226 5.226 5.226 5.226 5.226 4.878 0.012 - 10.45 51.08 1970 0.000 0.000 0.031 0.574 3.689 5.111 5.111 5.111 5.111 5.111 5.111 0.271 - 10.45 51.08 1971 0.000 0.006 0.119 1.342 4.289 5.125 5.125 5.125 5.125 5.125 3.587 0.000 - 10.45 51.08 1972 0.010 0.000 0.266 1.684 4.093 4.696 4.696 4.696 4.696 4.696 2.818 0.000 - 10.45 51.08 1973 0.000 0.000 0.090 0.660 3.395 4.794 4.794 4.794 4.794 4.794 2.557 0.000 - 10.45 51.08 1974 0.017 0.254 0.710 2.657 4.253 4.506 4.506 4.506 4.506 4.506 0.000 0.023 - 10.45 51.08 1975 0.000 0.009 0.257 0.918 3.900 4.674 4.674 4.674 4.674 4.674 2.025 0.000 - 10.45 51.08 1976 0.000 0.000 0.043 1.358 3.894 4.580 4.580 4.580 4.580 4.580 3.053 0.000 - 10.45 51.08 1977 0.000 0.021 0.814 1.730 3.744 4.097 4.097 4.097 4.097 4.097 1.348 0.000 - 10.45 51.08 1978 0.000 0.006 0.349 1.320 3.371 4.110 4.110 4.110 4.110 4.110 1.918 0.003 - 10.45 51.08 1979 0.039 0.000 0.024 0.668 2.677 4.237 4.237 4.237 4.237 4.237 1.836 0.037 - 10.45 51.08 1980 0.080 0.004 0.057 0.798 2.569 4.271 4.271 4.271 4.271 4.271 0.997 0.131 - 10.45 51.08 1981 0.227 0.008 0.710 3.014 4.123 4.242 4.242 4.242 4.242 4.242 0.102 0.000 - 10.45 51.08 1982 0.000 0.000 0.038 1.011 3.068 4.333 4.333 4.333 4.333 4.333 4.069 0.000 - 10.45 51.08 1983 0.000 0.029 0.377 1.414 3.717 3.883 3.883 3.883 3.883 3.883 1.765 0.000 - 10.45 51.08 1984 0.000 0.000 0.010 0.513 2.808 3.951 3.951 3.951 3.951 3.951 2.634 0.000 - 10.45 51.08 1985 0.007 0.002 0.030 1.396 3.286 3.932 3.932 3.932 3.932 3.932 1.442 0.017 - 10.45 51.08 1986 0.041 0.000 0.043 0.478 3.370 3.893 3.893 3.893 3.893 3.893 3.473 0.000 - 10.45 51.08 1987 0.000 0.000 0.018 0.971 3.541 3.917 3.917 3.917 3.917 3.917 2.872 0.000 - 10.45 51.08 1988 0.000 0.001 0.044 0.896 3.496 3.927 3.927 3.927 3.927 3.927 2.749 0.000 - 10.45 51.08 1989 0.002 0.016 0.446 1.994 3.750 3.953 3.953 3.953 3.953 3.953 1.177 0.000 - 10.45 51.08 1990 0.000 0.212 1.501 2.872 3.848 3.855 3.855 3.855 3.855 2.685 0.000 0.000 - 10.45 51.08 1991 0.000 0.001 0.705 2.374 3.647 3.980 3.980 3.980 3.980 3.980 0.788 0.000 - 10.45 51.08 1992 0.000 0.016 0.351 1.043 3.335 3.791 3.791 3.791 3.791 3.791 0.379 0.000 - 10.45 51.08 1993 0.007 0.105 0.601 1.918 3.733 3.733 3.733 3.733 3.733 3.733 0.693 0.000 - 10.45 51.08 1994 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1995 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1996 0.065 0.042 0.056 0.557 1.455 1.480 1.480 1.480 1.480 1.480 1.303 0.050 - 10.45 51.08 1997 0.083 0.240 1.332 2.260 2.989 2.563 2.656 3.045 3.045 3.045 1.024 0.369 - 10.45 51.08 1998 0.557 0.710 2.237 3.688 4.014 4.014 3.925 3.120 4.014 3.800 1.879 0.207 - 10.45 51.08 1999 0.290 0.305 0.621 1.909 2.916 2.966 2.966 2.966 2.966 2.966 1.329 0.236 - 10.45 51.08 2000 0.230 0.304 0.668 1.603 3.184 3.184 3.184 3.184 3.184 3.184 0.966 0.230 - 10.45 51.08 2001 0.262 0.347 0.797 1.884 3.907 4.139 4.139 4.139 4.139 4.139 1.676 0.262 - 10.45 51.08 2002 0.273 1.194 2.144 3.359 4.860 4.888 4.888 4.888 4.888 3.154 0.260 0.260 - 10.45 51.08 2003 0.244 0.244 0.522 2.089 5.263 5.356 5.356 5.356 5.356 5.356 0.926 0.244 - 10.45 51.08 2004 0.227 0.677 1.546 3.486 5.535 5.535 5.535 5.535 5.535 5.137 0.227 0.227 - 10.45 51.08 2005 0.189 0.189 0.581 3.009 5.675 5.714 5.714 5.714 5.714 5.714 1.888 0.189 - 10.45 51.08 2006 0.151 0.151 0.238 2.040 5.494 5.838 5.838 5.838 5.838 5.838 3.563 0.151 - 10.45 51.08 2007 0.111 0.128 0.604 3.149 5.838 5.841 5.841 5.841 5.841 5.841 1.593 0.111 - 10.45 51.08 2008 0.145 0.545 1.530 2.740 5.837 6.148 6.148 6.148 6.148 6.148 1.152 0.091 - 10.45 51.08 2009 0.060 0.060 0.158 3.113 5.829 5.829 5.829 5.829 5.829 5.829 1.983 0.060 - 10.45 51.08 2010 0.044 0.044 0.516 2.939 5.653 5.735 5.735 5.735 5.735 5.735 1.716 0.044 - 10.45 51.08 2011 0.031 0.199 0.818 4.079 5.789 5.789 5.789 5.789 5.789 5.715 0.185 0.028 - 10.45 51.08 2012 0.017 0.021 0.808 2.889 5.714 5.733 5.733 5.733 5.733 5.733 1.392 0.017 diff --git a/rLPJGUESS/inst/extdata/outputsForTests/run_nyear_spinup/outDirectory/mmon.out b/rLPJGUESS/inst/extdata/outputsForTests/run_nyear_spinup/outDirectory/mmon.out deleted file mode 100644 index 8edc368..0000000 --- a/rLPJGUESS/inst/extdata/outputsForTests/run_nyear_spinup/outDirectory/mmon.out +++ /dev/null @@ -1,63 +0,0 @@ - Lon Lat Year Jan Feb Mar Apr May Jun Jul Aug Sep Oct Nov Dec - 10.45 51.08 1951 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1952 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1953 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1954 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1955 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1956 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1957 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1958 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1959 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1960 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1961 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1962 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1963 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1964 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1965 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1966 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1967 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1968 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1969 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1970 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1971 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1972 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1973 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1974 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1975 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1976 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1977 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1978 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1979 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1980 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1981 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1982 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1983 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1984 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1985 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1986 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1987 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1988 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1989 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1990 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1991 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1992 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1993 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1994 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1995 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1996 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1997 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1998 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1999 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 2000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 2001 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 2002 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 2003 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 2004 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 2005 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 2006 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 2007 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 2008 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 2009 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 2010 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 2011 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 2012 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 diff --git a/rLPJGUESS/inst/extdata/outputsForTests/run_nyear_spinup/outDirectory/mnee.out b/rLPJGUESS/inst/extdata/outputsForTests/run_nyear_spinup/outDirectory/mnee.out deleted file mode 100644 index a556a03..0000000 --- a/rLPJGUESS/inst/extdata/outputsForTests/run_nyear_spinup/outDirectory/mnee.out +++ /dev/null @@ -1,63 +0,0 @@ - Lon Lat Year Jan Feb Mar Apr May Jun Jul Aug Sep Oct Nov Dec - 10.45 51.08 1951 -0.014 -0.013 -0.008 0.019 -0.001 0.040 -0.015 -0.037 -0.067 -0.035 -0.030 -0.018 - 10.45 51.08 1952 -0.014 -0.002 -0.012 0.003 0.039 0.013 -0.091 -0.086 -0.014 -0.007 -0.016 -0.004 - 10.45 51.08 1953 -0.005 -0.005 -0.010 0.019 0.012 -0.001 0.010 -0.012 -0.022 -0.033 -0.028 -0.020 - 10.45 51.08 1954 -0.005 -0.001 -0.011 0.005 0.063 0.015 0.030 0.025 -0.006 0.002 -0.018 -0.017 - 10.45 51.08 1955 -0.005 -0.008 -0.002 0.005 0.056 0.045 0.006 0.023 0.005 -0.005 -0.012 -0.012 - 10.45 51.08 1956 -0.018 -0.001 -0.004 0.001 0.066 0.043 0.054 0.047 0.014 -0.015 -0.015 -0.017 - 10.45 51.08 1957 -0.008 -0.024 -0.009 0.033 0.058 0.022 -0.037 0.025 0.006 0.004 -0.024 -0.011 - 10.45 51.08 1958 -0.016 -0.020 -0.005 0.008 0.046 0.056 0.038 0.002 -0.021 -0.016 -0.018 -0.016 - 10.45 51.08 1959 -0.017 -0.006 -0.019 0.023 0.056 0.043 -0.070 -0.029 -0.113 -0.061 -0.020 -0.011 - 10.45 51.08 1960 -0.016 -0.008 -0.018 -0.006 0.063 0.053 0.023 -0.009 -0.017 -0.006 -0.017 -0.013 - 10.45 51.08 1961 -0.008 -0.019 -0.027 0.023 0.068 0.079 -0.001 0.014 -0.034 -0.036 -0.033 -0.013 - 10.45 51.08 1962 -0.018 -0.014 -0.004 -0.007 0.047 0.042 0.039 -0.067 -0.019 -0.065 -0.020 -0.007 - 10.45 51.08 1963 -0.001 -0.001 -0.014 -0.001 0.057 0.026 -0.031 0.007 0.005 -0.007 -0.017 -0.006 - 10.45 51.08 1964 -0.003 -0.008 -0.008 -0.001 0.082 0.034 -0.035 -0.051 -0.046 -0.030 -0.025 -0.015 - 10.45 51.08 1965 -0.014 -0.004 -0.010 -0.011 0.059 0.070 0.033 0.042 0.017 -0.013 -0.015 -0.014 - 10.45 51.08 1966 -0.007 -0.013 -0.017 0.021 0.069 0.033 0.067 0.044 0.026 -0.017 -0.014 -0.013 - 10.45 51.08 1967 -0.014 -0.020 -0.017 0.006 0.065 0.066 0.034 -0.010 0.008 -0.012 -0.016 -0.010 - 10.45 51.08 1968 -0.008 -0.015 -0.009 0.011 0.070 0.048 0.024 -0.026 -0.010 -0.006 -0.018 -0.006 - 10.45 51.08 1969 -0.010 -0.008 -0.005 -0.010 0.068 0.088 0.022 -0.034 0.036 0.000 -0.019 -0.004 - 10.45 51.08 1970 -0.004 -0.005 -0.010 -0.014 0.056 0.048 0.029 0.023 0.025 -0.009 -0.014 -0.014 - 10.45 51.08 1971 -0.008 -0.020 -0.013 -0.004 0.032 0.044 0.035 -0.106 -0.041 -0.026 -0.015 -0.018 - 10.45 51.08 1972 -0.008 -0.012 -0.022 0.001 0.070 0.094 0.025 0.049 0.029 0.010 -0.014 -0.013 - 10.45 51.08 1973 -0.009 -0.016 -0.020 -0.016 0.058 0.039 -0.022 -0.100 -0.020 0.004 -0.010 -0.008 - 10.45 51.08 1974 -0.024 -0.021 -0.006 0.028 0.077 0.081 0.068 0.011 0.008 -0.005 -0.021 -0.021 - 10.45 51.08 1975 -0.032 -0.017 -0.023 0.007 0.069 0.063 0.028 -0.027 -0.007 -0.018 -0.014 -0.014 - 10.45 51.08 1976 -0.021 -0.006 -0.014 -0.004 0.070 0.055 -0.151 -0.056 -0.051 -0.017 -0.013 -0.012 - 10.45 51.08 1977 -0.009 -0.020 -0.017 0.021 0.093 0.039 0.062 0.037 0.027 0.009 -0.017 -0.011 - 10.45 51.08 1978 -0.016 -0.007 -0.021 0.005 0.059 0.039 0.055 0.014 0.016 0.012 -0.016 -0.011 - 10.45 51.08 1979 -0.003 -0.003 -0.017 -0.008 0.050 0.021 0.048 0.030 0.012 -0.002 -0.009 -0.020 - 10.45 51.08 1980 -0.006 -0.017 -0.019 -0.007 0.069 0.056 0.045 0.015 0.011 0.004 -0.021 -0.011 - 10.45 51.08 1981 -0.009 -0.008 -0.005 0.033 0.085 0.062 0.023 0.036 0.028 0.010 -0.021 -0.007 - 10.45 51.08 1982 -0.006 -0.010 -0.024 -0.003 0.051 0.012 -0.005 -0.057 -0.105 -0.024 -0.011 -0.017 - 10.45 51.08 1983 -0.027 -0.009 -0.018 0.025 0.075 0.076 0.008 -0.000 -0.020 -0.016 -0.022 -0.012 - 10.45 51.08 1984 -0.025 -0.010 -0.013 -0.004 0.049 0.085 0.064 0.036 0.019 0.012 -0.009 -0.013 - 10.45 51.08 1985 -0.003 -0.006 -0.016 0.002 0.053 0.057 0.060 0.030 0.019 -0.050 -0.012 -0.020 - 10.45 51.08 1986 -0.010 -0.003 -0.015 -0.006 0.058 0.088 0.029 0.008 0.043 0.013 -0.002 -0.016 - 10.45 51.08 1987 -0.005 -0.005 -0.007 0.005 0.080 0.085 0.054 0.055 0.016 0.016 -0.010 -0.012 - 10.45 51.08 1988 -0.026 -0.018 -0.016 0.000 0.066 0.030 0.058 0.024 -0.005 -0.032 -0.016 -0.016 - 10.45 51.08 1989 -0.023 -0.018 -0.017 0.016 0.117 0.081 -0.044 -0.056 -0.036 0.002 -0.017 -0.015 - 10.45 51.08 1990 -0.017 -0.025 0.008 0.052 0.108 0.069 0.073 -0.075 0.009 -0.007 -0.029 -0.011 - 10.45 51.08 1991 -0.022 -0.005 -0.021 0.037 0.080 0.082 -0.075 0.025 -0.047 -0.029 -0.020 -0.011 - 10.45 51.08 1992 -0.019 -0.016 -0.020 0.012 0.082 0.025 0.039 -0.054 0.029 -0.004 -0.020 -0.014 - 10.45 51.08 1993 -0.018 -0.005 -0.006 0.035 0.047 0.081 0.078 0.052 0.031 0.006 -0.010 -0.013 - 10.45 51.08 1994 -0.021 -0.011 -0.013 0.028 0.084 0.090 0.032 0.007 0.040 0.019 -0.014 -0.019 - 10.45 51.08 1995 -0.007 -0.022 -0.023 -0.041 -0.076 -0.079 -0.135 -0.147 -0.064 -0.058 -0.022 -0.002 - 10.45 51.08 1996 0.000 0.000 -0.005 -0.028 -0.042 -0.072 -0.064 -0.081 -0.045 -0.035 -0.021 -0.005 - 10.45 51.08 1997 -0.001 -0.007 0.002 0.049 0.050 0.011 -0.007 -0.038 -0.036 -0.047 -0.015 -0.009 - 10.45 51.08 1998 -0.023 -0.010 -0.012 0.011 0.029 -0.011 -0.028 -0.083 -0.032 -0.029 -0.020 -0.004 - 10.45 51.08 1999 -0.022 -0.006 -0.014 0.009 0.039 0.031 0.012 -0.026 -0.046 -0.038 -0.018 -0.011 - 10.45 51.08 2000 -0.010 -0.013 -0.008 0.028 0.039 0.027 0.014 0.006 0.004 -0.001 -0.022 -0.012 - 10.45 51.08 2001 -0.011 -0.016 -0.010 0.020 0.103 0.066 0.073 -0.017 -0.001 -0.005 -0.016 -0.008 - 10.45 51.08 2002 -0.006 -0.023 0.004 0.042 0.079 0.077 0.038 0.026 0.015 -0.002 -0.019 -0.008 - 10.45 51.08 2003 -0.010 -0.006 -0.010 0.027 0.044 0.070 -0.002 -0.107 0.015 -0.016 -0.019 -0.014 - 10.45 51.08 2004 -0.015 -0.020 0.001 0.055 0.093 0.069 0.055 -0.057 -0.071 -0.006 -0.031 -0.010 - 10.45 51.08 2005 -0.024 -0.005 -0.003 0.034 0.071 0.027 -0.033 0.020 -0.014 0.002 -0.027 -0.013 - 10.45 51.08 2006 -0.006 -0.007 -0.004 0.017 0.073 0.080 -0.063 0.000 -0.020 -0.019 -0.029 -0.027 - 10.45 51.08 2007 -0.038 -0.022 -0.021 0.058 0.059 0.057 0.052 0.065 0.035 0.006 -0.013 -0.013 - 10.45 51.08 2008 -0.026 -0.019 -0.012 0.032 0.082 0.037 0.016 -0.080 -0.044 -0.002 -0.023 -0.012 - 10.45 51.08 2009 -0.005 -0.011 -0.026 0.033 0.084 0.058 0.024 -0.070 -0.027 -0.016 -0.024 -0.014 - 10.45 51.08 2010 -0.003 -0.005 -0.011 0.037 0.057 0.067 -0.003 0.040 0.033 0.012 -0.019 -0.003 - 10.45 51.08 2011 -0.016 -0.013 -0.006 0.049 0.053 0.041 0.037 -0.022 -0.034 -0.035 -0.025 -0.021 - 10.45 51.08 2012 -0.026 -0.005 -0.014 0.013 0.034 0.047 0.043 -0.041 -0.054 -0.013 -0.025 -0.013 diff --git a/rLPJGUESS/inst/extdata/outputsForTests/run_nyear_spinup/outDirectory/mnpp.out b/rLPJGUESS/inst/extdata/outputsForTests/run_nyear_spinup/outDirectory/mnpp.out deleted file mode 100644 index 3cee78e..0000000 --- a/rLPJGUESS/inst/extdata/outputsForTests/run_nyear_spinup/outDirectory/mnpp.out +++ /dev/null @@ -1,63 +0,0 @@ - Lon Lat Year Jan Feb Mar Apr May Jun Jul Aug Sep Oct Nov Dec - 10.45 51.08 1951 -0.001 0.001 0.007 0.069 0.098 0.126 0.117 0.080 0.046 0.017 -0.004 -0.004 - 10.45 51.08 1952 -0.001 -0.000 0.004 0.064 0.119 0.132 0.073 0.062 0.043 0.020 -0.001 -0.001 - 10.45 51.08 1953 -0.002 0.000 0.018 0.095 0.124 0.114 0.125 0.113 0.081 0.039 0.001 -0.001 - 10.45 51.08 1954 -0.002 -0.001 0.007 0.036 0.146 0.142 0.119 0.110 0.071 0.042 0.005 -0.004 - 10.45 51.08 1955 -0.002 -0.002 0.002 0.036 0.140 0.146 0.114 0.097 0.078 0.038 0.002 -0.004 - 10.45 51.08 1956 -0.004 -0.001 0.004 0.030 0.150 0.126 0.133 0.124 0.086 0.035 -0.001 -0.005 - 10.45 51.08 1957 -0.004 -0.003 0.026 0.082 0.134 0.151 0.113 0.118 0.071 0.036 -0.005 -0.004 - 10.45 51.08 1958 -0.004 -0.003 -0.000 0.031 0.134 0.144 0.149 0.125 0.084 0.036 -0.002 -0.006 - 10.45 51.08 1959 -0.005 -0.003 0.017 0.089 0.156 0.156 0.079 0.089 -0.032 -0.010 -0.005 -0.005 - 10.45 51.08 1960 -0.005 -0.003 0.002 0.041 0.133 0.170 0.132 0.098 0.069 0.030 0.001 -0.005 - 10.45 51.08 1961 -0.004 -0.005 0.014 0.072 0.119 0.160 0.126 0.116 0.070 0.034 -0.007 -0.005 - 10.45 51.08 1962 -0.006 -0.004 -0.003 0.032 0.114 0.144 0.138 0.043 0.057 -0.016 -0.000 -0.003 - 10.45 51.08 1963 -0.001 -0.001 -0.004 0.037 0.142 0.143 0.089 0.100 0.082 0.032 0.004 -0.003 - 10.45 51.08 1964 -0.003 -0.004 -0.004 0.036 0.159 0.166 0.089 0.057 0.035 0.012 -0.007 -0.005 - 10.45 51.08 1965 -0.005 -0.003 -0.004 0.027 0.121 0.151 0.131 0.135 0.085 0.034 -0.002 -0.007 - 10.45 51.08 1966 -0.004 -0.002 0.004 0.058 0.164 0.152 0.131 0.119 0.078 0.035 -0.006 -0.006 - 10.45 51.08 1967 -0.006 -0.005 0.009 0.037 0.149 0.144 0.160 0.101 0.068 0.038 0.001 -0.006 - 10.45 51.08 1968 -0.005 -0.005 0.002 0.062 0.135 0.152 0.138 0.069 0.067 0.030 -0.003 -0.004 - 10.45 51.08 1969 -0.006 -0.004 -0.005 0.012 0.131 0.157 0.138 0.087 0.086 0.041 0.004 -0.003 - 10.45 51.08 1970 -0.004 -0.004 -0.006 0.009 0.115 0.158 0.146 0.107 0.089 0.025 0.002 -0.006 - 10.45 51.08 1971 -0.005 -0.006 -0.005 0.038 0.125 0.133 0.141 0.012 0.022 0.018 0.002 -0.010 - 10.45 51.08 1972 -0.003 -0.006 -0.000 0.039 0.124 0.165 0.120 0.110 0.073 0.036 0.003 -0.006 - 10.45 51.08 1973 -0.005 -0.006 -0.006 0.009 0.131 0.145 0.099 -0.002 0.060 0.035 0.000 -0.006 - 10.45 51.08 1974 -0.008 -0.006 0.011 0.076 0.132 0.149 0.135 0.105 0.084 0.019 -0.010 -0.010 - 10.45 51.08 1975 -0.010 -0.006 -0.006 0.028 0.132 0.139 0.141 0.085 0.072 0.024 -0.000 -0.007 - 10.45 51.08 1976 -0.008 -0.005 -0.006 0.033 0.146 0.140 -0.020 0.024 0.010 0.031 0.002 -0.006 - 10.45 51.08 1977 -0.006 -0.007 0.009 0.041 0.155 0.111 0.132 0.089 0.068 0.037 0.001 -0.007 - 10.45 51.08 1978 -0.006 -0.004 -0.000 0.038 0.113 0.140 0.136 0.109 0.068 0.038 -0.004 -0.006 - 10.45 51.08 1979 -0.003 -0.003 -0.008 0.015 0.105 0.135 0.125 0.115 0.079 0.038 0.000 -0.010 - 10.45 51.08 1980 -0.004 -0.007 -0.007 0.016 0.117 0.149 0.115 0.110 0.079 0.040 -0.010 -0.007 - 10.45 51.08 1981 -0.005 -0.005 0.013 0.073 0.130 0.129 0.115 0.103 0.079 0.034 -0.010 -0.004 - 10.45 51.08 1982 -0.005 -0.005 -0.010 0.031 0.116 0.119 0.100 0.041 -0.032 0.019 0.010 -0.008 - 10.45 51.08 1983 -0.010 -0.004 -0.001 0.050 0.123 0.148 0.120 0.090 0.046 0.027 -0.007 -0.007 - 10.45 51.08 1984 -0.007 -0.005 -0.007 0.018 0.087 0.136 0.129 0.101 0.060 0.038 0.003 -0.007 - 10.45 51.08 1985 -0.003 -0.004 -0.007 0.040 0.124 0.137 0.148 0.116 0.080 -0.006 -0.000 -0.011 - 10.45 51.08 1986 -0.006 -0.002 -0.008 0.010 0.124 0.146 0.131 0.100 0.081 0.045 0.010 -0.008 - 10.45 51.08 1987 -0.003 -0.005 -0.005 0.037 0.128 0.126 0.134 0.105 0.069 0.042 0.002 -0.008 - 10.45 51.08 1988 -0.010 -0.007 -0.007 0.030 0.145 0.112 0.138 0.116 0.055 0.011 0.001 -0.009 - 10.45 51.08 1989 -0.009 -0.008 0.005 0.049 0.178 0.159 0.047 0.026 0.026 0.043 -0.002 -0.010 - 10.45 51.08 1990 -0.009 -0.006 0.035 0.078 0.178 0.123 0.145 0.016 0.065 0.034 -0.012 -0.007 - 10.45 51.08 1991 -0.009 -0.005 0.006 0.070 0.120 0.149 0.022 0.095 0.014 0.011 -0.005 -0.007 - 10.45 51.08 1992 -0.008 -0.008 -0.002 0.037 0.150 0.110 0.111 0.035 0.080 0.025 -0.010 -0.008 - 10.45 51.08 1993 -0.010 -0.004 0.005 0.072 0.128 0.134 0.129 0.112 0.066 0.029 -0.006 -0.009 - 10.45 51.08 1994 -0.010 -0.006 0.004 0.052 0.144 0.147 0.123 0.094 0.075 0.037 -0.000 -0.012 - 10.45 51.08 1995 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1996 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1997 -0.000 0.002 0.022 0.069 0.119 0.100 0.078 0.089 0.063 0.002 -0.001 -0.001 - 10.45 51.08 1998 -0.002 0.003 0.014 0.057 0.124 0.109 0.087 0.049 0.027 -0.001 -0.008 -0.000 - 10.45 51.08 1999 -0.001 0.000 0.010 0.058 0.138 0.132 0.118 0.098 0.071 0.021 0.001 -0.001 - 10.45 51.08 2000 -0.002 0.000 0.011 0.070 0.155 0.139 0.107 0.121 0.070 0.040 0.002 0.004 - 10.45 51.08 2001 -0.002 -0.002 0.005 0.045 0.177 0.145 0.163 0.113 0.065 0.049 0.002 -0.003 - 10.45 51.08 2002 -0.003 0.003 0.023 0.069 0.141 0.159 0.127 0.108 0.083 0.023 -0.004 -0.004 - 10.45 51.08 2003 -0.004 -0.002 0.010 0.071 0.152 0.191 0.125 0.035 0.094 0.020 -0.002 -0.005 - 10.45 51.08 2004 -0.004 -0.005 0.018 0.100 0.145 0.165 0.155 0.070 0.010 0.045 -0.006 -0.005 - 10.45 51.08 2005 -0.006 -0.003 0.009 0.085 0.150 0.139 0.090 0.117 0.077 0.054 0.005 -0.005 - 10.45 51.08 2006 -0.003 -0.003 -0.001 0.058 0.173 0.180 0.081 0.104 0.063 0.043 0.001 -0.008 - 10.45 51.08 2007 -0.009 -0.006 0.010 0.119 0.158 0.163 0.141 0.130 0.083 0.032 -0.002 -0.006 - 10.45 51.08 2008 -0.009 -0.001 0.013 0.059 0.177 0.156 0.131 0.029 0.024 0.037 -0.007 -0.006 - 10.45 51.08 2009 -0.004 -0.005 -0.006 0.100 0.160 0.142 0.142 0.045 0.050 0.020 -0.008 -0.006 - 10.45 51.08 2010 -0.003 -0.004 0.008 0.090 0.112 0.167 0.130 0.101 0.078 0.036 -0.003 -0.003 - 10.45 51.08 2011 -0.007 -0.005 0.014 0.124 0.149 0.151 0.131 0.078 0.044 0.014 -0.006 -0.009 - 10.45 51.08 2012 -0.008 -0.004 0.021 0.060 0.134 0.138 0.135 0.063 0.017 0.028 -0.005 -0.008 diff --git a/rLPJGUESS/inst/extdata/outputsForTests/run_nyear_spinup/outDirectory/mpet.out b/rLPJGUESS/inst/extdata/outputsForTests/run_nyear_spinup/outDirectory/mpet.out deleted file mode 100644 index 9533376..0000000 --- a/rLPJGUESS/inst/extdata/outputsForTests/run_nyear_spinup/outDirectory/mpet.out +++ /dev/null @@ -1,63 +0,0 @@ - Lon Lat Year Jan Feb Mar Apr May Jun Jul Aug Sep Oct Nov Dec - 10.45 51.08 1951 1.126 2.427 8.960 48.981 64.655 88.612 93.653 73.857 47.621 19.184 5.015 1.253 - 10.45 51.08 1952 0.738 1.208 6.483 48.814 72.981 88.946 100.415 74.328 31.818 15.836 3.680 0.511 - 10.45 51.08 1953 2.581 6.059 30.680 67.901 99.453 87.972 104.546 91.530 58.602 27.405 5.755 3.019 - 10.45 51.08 1954 1.793 3.109 15.384 38.149 89.971 98.393 74.225 77.831 49.553 25.556 7.322 2.014 - 10.45 51.08 1955 1.016 1.792 6.930 35.418 75.588 84.010 76.582 64.225 46.817 21.208 4.209 1.157 - 10.45 51.08 1956 0.570 0.231 6.902 23.884 82.965 67.669 84.016 67.737 45.704 20.722 3.366 0.587 - 10.45 51.08 1957 0.613 2.305 19.549 46.542 72.890 113.799 90.168 72.878 41.192 19.598 1.415 0.315 - 10.45 51.08 1958 0.370 2.955 3.922 23.755 82.464 88.499 102.487 91.213 57.032 23.990 4.100 0.464 - 10.45 51.08 1959 0.471 1.158 15.377 55.520 89.255 109.214 120.801 79.623 69.747 30.445 1.052 0.336 - 10.45 51.08 1960 0.395 0.507 5.923 34.315 79.088 114.148 94.205 75.557 44.797 21.304 5.635 0.246 - 10.45 51.08 1961 0.157 2.127 14.927 42.217 65.318 104.215 88.623 78.120 61.730 25.129 0.447 0.236 - 10.45 51.08 1962 0.285 0.346 1.348 31.230 62.167 106.656 88.278 87.429 56.939 23.310 3.599 0.097 - 10.45 51.08 1963 0.053 0.059 2.367 30.338 82.482 94.477 109.112 79.877 52.356 19.631 7.116 0.049 - 10.45 51.08 1964 0.042 0.238 0.596 32.883 96.167 129.363 116.016 83.320 56.738 18.514 1.041 0.124 - 10.45 51.08 1965 0.223 0.054 1.913 25.835 70.679 94.202 84.829 85.164 47.795 22.088 2.988 0.078 - 10.45 51.08 1966 0.066 3.003 7.415 36.530 95.621 107.119 80.982 80.027 46.206 25.340 1.093 0.059 - 10.45 51.08 1967 0.065 1.217 12.387 29.244 94.075 89.884 123.960 79.361 44.979 26.287 4.233 0.037 - 10.45 51.08 1968 0.025 0.083 10.464 51.779 72.194 99.895 106.699 77.815 44.277 20.430 3.425 0.012 - 10.45 51.08 1969 0.021 0.030 0.040 19.450 82.076 101.882 116.957 86.712 54.349 23.982 7.006 0.005 - 10.45 51.08 1970 0.003 0.010 0.430 12.496 68.088 119.239 102.193 77.125 56.844 18.126 6.580 0.307 - 10.45 51.08 1971 0.000 0.011 1.206 35.481 82.181 79.017 130.309 102.092 54.918 27.824 5.344 0.000 - 10.45 51.08 1972 0.005 0.000 8.065 28.463 69.459 97.366 90.317 72.837 40.895 20.385 4.856 0.000 - 10.45 51.08 1973 0.000 0.000 3.330 13.672 78.368 95.585 96.474 96.254 52.735 21.355 3.966 0.000 - 10.45 51.08 1974 0.028 0.870 11.686 46.138 67.770 83.639 81.754 78.538 52.710 14.103 0.000 0.028 - 10.45 51.08 1975 0.000 0.015 2.305 26.756 75.778 81.159 104.420 103.122 51.917 17.214 3.162 0.000 - 10.45 51.08 1976 0.001 0.002 1.117 30.907 88.819 108.553 119.734 86.642 38.732 20.341 4.727 0.000 - 10.45 51.08 1977 0.000 0.122 10.318 27.000 78.059 66.348 84.114 58.040 39.701 20.634 4.502 0.000 - 10.45 51.08 1978 0.000 0.135 5.987 28.848 61.222 79.614 81.173 70.006 36.670 20.515 2.261 0.011 - 10.45 51.08 1979 0.029 0.000 0.430 17.502 72.426 90.001 72.186 71.982 48.218 21.349 3.745 0.021 - 10.45 51.08 1980 0.041 0.010 1.074 20.431 75.027 84.785 67.652 81.135 48.312 20.224 0.748 0.124 - 10.45 51.08 1981 0.224 0.008 13.597 42.018 74.282 79.644 74.224 70.760 46.790 19.633 0.322 0.000 - 10.45 51.08 1982 0.000 0.000 1.198 31.935 77.047 95.504 99.222 84.809 59.365 19.246 7.328 0.000 - 10.45 51.08 1983 0.000 0.040 5.128 33.702 59.815 88.995 108.380 78.508 47.274 20.533 3.816 0.000 - 10.45 51.08 1984 0.000 0.000 0.214 25.501 48.234 72.202 78.622 70.856 35.287 20.132 4.594 0.000 - 10.45 51.08 1985 0.003 0.004 0.425 32.120 72.666 72.053 99.126 73.122 46.340 20.678 2.495 0.024 - 10.45 51.08 1986 0.032 0.000 1.389 13.044 76.494 87.562 87.268 75.080 39.064 23.302 6.143 0.000 - 10.45 51.08 1987 0.000 0.000 0.511 34.922 60.171 64.869 88.154 63.283 44.402 20.490 4.139 0.000 - 10.45 51.08 1988 0.000 0.001 0.718 29.889 81.512 72.895 90.680 82.516 41.860 18.790 3.951 0.000 - 10.45 51.08 1989 0.006 0.099 12.421 28.946 98.107 90.652 88.509 79.590 44.672 22.383 3.363 0.000 - 10.45 51.08 1990 0.000 3.183 21.948 38.786 94.775 73.703 91.643 85.346 34.057 20.639 0.000 0.000 - 10.45 51.08 1991 0.000 0.003 10.898 39.147 54.856 78.074 108.210 77.453 55.579 23.022 1.801 0.000 - 10.45 51.08 1992 0.000 0.112 5.367 29.818 91.195 78.866 92.449 77.288 44.120 14.100 0.873 0.000 - 10.45 51.08 1993 0.017 0.145 8.692 47.144 84.417 79.911 80.728 72.907 34.911 16.978 0.548 0.000 - 10.45 51.08 1994 0.000 0.042 9.073 34.567 75.771 90.284 110.815 76.076 41.818 18.161 4.219 0.000 - 10.45 51.08 1995 8.589 17.863 36.907 60.200 97.284 95.103 140.304 119.316 52.385 35.555 11.005 5.185 - 10.45 51.08 1996 3.059 6.770 14.039 54.364 63.741 104.266 91.148 80.699 33.448 20.539 6.639 2.729 - 10.45 51.08 1997 1.074 4.071 18.296 41.871 74.396 83.947 72.791 83.475 51.027 15.344 2.821 1.181 - 10.45 51.08 1998 0.627 2.893 12.662 36.114 77.107 78.551 65.962 64.085 29.252 11.140 2.177 0.227 - 10.45 51.08 1999 2.555 3.874 14.707 41.894 86.319 86.398 95.498 77.278 60.236 17.333 4.696 1.707 - 10.45 51.08 2000 2.173 5.674 15.450 50.921 95.335 101.363 64.702 87.936 44.756 23.111 5.590 2.248 - 10.45 51.08 2001 1.973 4.096 10.257 33.285 96.282 78.207 107.467 83.822 35.210 27.219 5.384 1.306 - 10.45 51.08 2002 1.061 5.222 15.570 35.576 68.256 87.547 75.433 70.084 44.016 14.565 1.475 0.470 - 10.45 51.08 2003 0.439 0.485 11.096 44.427 77.533 116.860 93.913 105.047 50.871 14.490 2.296 0.311 - 10.45 51.08 2004 0.286 1.199 13.775 51.474 71.569 86.875 89.520 91.315 57.405 23.771 0.805 0.194 - 10.45 51.08 2005 0.416 0.350 9.863 49.208 87.489 107.548 101.561 71.906 62.314 27.886 5.370 0.235 - 10.45 51.08 2006 0.107 0.389 3.111 37.318 93.068 115.342 146.703 64.367 69.919 25.850 6.179 0.385 - 10.45 51.08 2007 0.420 1.081 13.462 73.459 100.094 107.888 101.502 89.717 46.550 19.493 3.033 0.173 - 10.45 51.08 2008 0.461 3.088 12.356 36.220 102.721 115.723 110.369 85.869 45.700 23.315 1.373 0.097 - 10.45 51.08 2009 0.054 0.162 1.810 64.398 88.185 79.350 102.680 100.174 54.806 16.913 3.660 0.113 - 10.45 51.08 2010 0.034 0.162 10.067 53.820 59.713 116.964 128.575 71.274 44.994 21.801 3.119 0.040 - 10.45 51.08 2011 0.068 0.483 14.827 70.441 108.821 104.150 90.116 78.131 61.305 27.767 1.196 0.068 - 10.45 51.08 2012 0.037 0.074 20.364 36.902 102.392 84.471 98.554 99.867 56.600 24.614 2.245 0.028 diff --git a/rLPJGUESS/inst/extdata/outputsForTests/run_nyear_spinup/outDirectory/mra.out b/rLPJGUESS/inst/extdata/outputsForTests/run_nyear_spinup/outDirectory/mra.out deleted file mode 100644 index d64a3e1..0000000 --- a/rLPJGUESS/inst/extdata/outputsForTests/run_nyear_spinup/outDirectory/mra.out +++ /dev/null @@ -1,63 +0,0 @@ - Lon Lat Year Jan Feb Mar Apr May Jun Jul Aug Sep Oct Nov Dec - 10.45 51.08 1951 0.002 0.002 0.005 0.032 0.053 0.069 0.072 0.062 0.048 0.025 0.014 0.005 - 10.45 51.08 1952 0.002 0.002 0.005 0.037 0.064 0.072 0.056 0.056 0.039 0.024 0.008 0.002 - 10.45 51.08 1953 0.002 0.003 0.012 0.043 0.062 0.062 0.071 0.065 0.049 0.030 0.007 0.003 - 10.45 51.08 1954 0.003 0.002 0.009 0.020 0.070 0.079 0.069 0.070 0.052 0.034 0.014 0.006 - 10.45 51.08 1955 0.003 0.003 0.006 0.023 0.071 0.080 0.079 0.071 0.058 0.033 0.012 0.006 - 10.45 51.08 1956 0.005 0.001 0.009 0.020 0.078 0.076 0.087 0.078 0.061 0.036 0.011 0.007 - 10.45 51.08 1957 0.005 0.009 0.023 0.045 0.071 0.096 0.093 0.082 0.056 0.037 0.010 0.005 - 10.45 51.08 1958 0.005 0.009 0.006 0.022 0.081 0.089 0.101 0.095 0.072 0.043 0.014 0.008 - 10.45 51.08 1959 0.006 0.005 0.019 0.053 0.087 0.097 0.090 0.086 0.042 0.029 0.009 0.007 - 10.45 51.08 1960 0.006 0.005 0.010 0.029 0.078 0.104 0.091 0.083 0.062 0.038 0.019 0.006 - 10.45 51.08 1961 0.004 0.009 0.018 0.048 0.068 0.095 0.089 0.084 0.073 0.046 0.008 0.006 - 10.45 51.08 1962 0.007 0.005 0.005 0.028 0.064 0.089 0.089 0.070 0.058 0.030 0.012 0.004 - 10.45 51.08 1963 0.001 0.001 0.008 0.028 0.078 0.090 0.087 0.083 0.066 0.035 0.020 0.003 - 10.45 51.08 1964 0.003 0.004 0.005 0.029 0.088 0.105 0.089 0.073 0.055 0.029 0.011 0.006 - 10.45 51.08 1965 0.006 0.003 0.007 0.022 0.067 0.090 0.088 0.088 0.062 0.037 0.010 0.007 - 10.45 51.08 1966 0.004 0.009 0.011 0.037 0.089 0.096 0.086 0.084 0.061 0.044 0.008 0.006 - 10.45 51.08 1967 0.006 0.008 0.015 0.026 0.084 0.088 0.111 0.086 0.063 0.050 0.015 0.006 - 10.45 51.08 1968 0.005 0.005 0.013 0.043 0.076 0.096 0.098 0.077 0.063 0.042 0.014 0.004 - 10.45 51.08 1969 0.006 0.004 0.005 0.020 0.080 0.096 0.106 0.087 0.069 0.044 0.023 0.003 - 10.45 51.08 1970 0.004 0.004 0.006 0.017 0.068 0.102 0.099 0.088 0.071 0.036 0.022 0.007 - 10.45 51.08 1971 0.005 0.006 0.007 0.030 0.080 0.085 0.104 0.080 0.052 0.039 0.016 0.010 - 10.45 51.08 1972 0.003 0.006 0.013 0.028 0.072 0.096 0.094 0.085 0.056 0.033 0.017 0.006 - 10.45 51.08 1973 0.005 0.006 0.010 0.014 0.074 0.093 0.088 0.066 0.066 0.035 0.014 0.006 - 10.45 51.08 1974 0.008 0.008 0.016 0.044 0.072 0.086 0.089 0.087 0.068 0.026 0.010 0.010 - 10.45 51.08 1975 0.010 0.006 0.010 0.024 0.076 0.086 0.103 0.091 0.071 0.034 0.013 0.007 - 10.45 51.08 1976 0.008 0.005 0.007 0.027 0.084 0.096 0.074 0.066 0.046 0.041 0.016 0.006 - 10.45 51.08 1977 0.006 0.007 0.017 0.027 0.081 0.078 0.091 0.074 0.058 0.041 0.017 0.007 - 10.45 51.08 1978 0.006 0.004 0.012 0.026 0.065 0.086 0.087 0.081 0.055 0.038 0.013 0.006 - 10.45 51.08 1979 0.003 0.003 0.009 0.019 0.065 0.094 0.084 0.084 0.065 0.039 0.012 0.010 - 10.45 51.08 1980 0.004 0.007 0.009 0.019 0.064 0.091 0.080 0.090 0.067 0.038 0.011 0.007 - 10.45 51.08 1981 0.005 0.005 0.021 0.045 0.079 0.089 0.087 0.085 0.066 0.038 0.012 0.004 - 10.45 51.08 1982 0.005 0.005 0.011 0.026 0.073 0.092 0.096 0.082 0.057 0.042 0.025 0.008 - 10.45 51.08 1983 0.010 0.004 0.012 0.035 0.072 0.094 0.103 0.088 0.060 0.040 0.013 0.007 - 10.45 51.08 1984 0.007 0.005 0.007 0.021 0.056 0.083 0.088 0.086 0.056 0.044 0.018 0.007 - 10.45 51.08 1985 0.003 0.004 0.008 0.032 0.077 0.083 0.100 0.087 0.066 0.033 0.010 0.011 - 10.45 51.08 1986 0.006 0.002 0.009 0.017 0.083 0.092 0.097 0.088 0.058 0.045 0.023 0.008 - 10.45 51.08 1987 0.003 0.005 0.006 0.032 0.070 0.078 0.097 0.081 0.067 0.041 0.017 0.008 - 10.45 51.08 1988 0.010 0.007 0.009 0.027 0.088 0.081 0.100 0.096 0.061 0.036 0.015 0.009 - 10.45 51.08 1989 0.009 0.008 0.018 0.036 0.099 0.098 0.079 0.076 0.059 0.048 0.015 0.010 - 10.45 51.08 1990 0.009 0.013 0.030 0.046 0.100 0.086 0.101 0.080 0.059 0.043 0.012 0.007 - 10.45 51.08 1991 0.009 0.005 0.020 0.043 0.067 0.091 0.086 0.095 0.063 0.039 0.013 0.007 - 10.45 51.08 1992 0.008 0.008 0.013 0.031 0.092 0.090 0.100 0.086 0.067 0.032 0.013 0.008 - 10.45 51.08 1993 0.010 0.004 0.014 0.051 0.090 0.092 0.094 0.090 0.058 0.036 0.007 0.009 - 10.45 51.08 1994 0.010 0.006 0.018 0.039 0.089 0.099 0.118 0.097 0.066 0.037 0.021 0.012 - 10.45 51.08 1995 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1996 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1997 0.000 0.002 0.014 0.032 0.060 0.054 0.051 0.067 0.050 0.023 0.004 0.001 - 10.45 51.08 1998 0.003 0.005 0.015 0.038 0.073 0.074 0.069 0.053 0.045 0.027 0.009 0.001 - 10.45 51.08 1999 0.003 0.002 0.007 0.030 0.065 0.067 0.070 0.062 0.052 0.024 0.008 0.002 - 10.45 51.08 2000 0.003 0.005 0.010 0.035 0.078 0.074 0.061 0.074 0.048 0.032 0.010 -0.002 - 10.45 51.08 2001 0.004 0.005 0.008 0.025 0.084 0.074 0.092 0.080 0.046 0.041 0.010 0.004 - 10.45 51.08 2002 0.006 0.011 0.018 0.037 0.078 0.093 0.086 0.085 0.061 0.026 0.009 0.005 - 10.45 51.08 2003 0.005 0.003 0.014 0.040 0.088 0.115 0.096 0.085 0.070 0.028 0.012 0.006 - 10.45 51.08 2004 0.005 0.008 0.017 0.053 0.079 0.096 0.099 0.089 0.053 0.045 0.009 0.005 - 10.45 51.08 2005 0.008 0.004 0.013 0.049 0.087 0.094 0.093 0.089 0.077 0.052 0.018 0.006 - 10.45 51.08 2006 0.003 0.004 0.008 0.037 0.096 0.108 0.111 0.087 0.079 0.053 0.023 0.010 - 10.45 51.08 2007 0.011 0.009 0.017 0.066 0.097 0.111 0.106 0.099 0.067 0.040 0.012 0.007 - 10.45 51.08 2008 0.011 0.010 0.017 0.038 0.102 0.109 0.107 0.084 0.057 0.044 0.013 0.007 - 10.45 51.08 2009 0.004 0.005 0.010 0.063 0.096 0.091 0.110 0.091 0.070 0.037 0.018 0.007 - 10.45 51.08 2010 0.003 0.005 0.016 0.051 0.069 0.106 0.118 0.090 0.066 0.040 0.016 0.003 - 10.45 51.08 2011 0.007 0.006 0.017 0.072 0.093 0.104 0.099 0.090 0.070 0.042 0.011 0.010 - 10.45 51.08 2012 0.008 0.004 0.024 0.041 0.094 0.095 0.107 0.095 0.062 0.044 0.014 0.008 diff --git a/rLPJGUESS/inst/extdata/outputsForTests/run_nyear_spinup/outDirectory/mrh.out b/rLPJGUESS/inst/extdata/outputsForTests/run_nyear_spinup/outDirectory/mrh.out deleted file mode 100644 index ec75ed1..0000000 --- a/rLPJGUESS/inst/extdata/outputsForTests/run_nyear_spinup/outDirectory/mrh.out +++ /dev/null @@ -1,63 +0,0 @@ - Lon Lat Year Jan Feb Mar Apr May Jun Jul Aug Sep Oct Nov Dec - 10.45 51.08 1951 0.013 0.013 0.015 0.051 0.098 0.087 0.133 0.116 0.113 0.052 0.026 0.014 - 10.45 51.08 1952 0.013 0.002 0.016 0.061 0.080 0.119 0.164 0.147 0.057 0.026 0.015 0.003 - 10.45 51.08 1953 0.004 0.005 0.028 0.075 0.112 0.115 0.115 0.124 0.103 0.072 0.029 0.019 - 10.45 51.08 1954 0.003 0.000 0.018 0.031 0.083 0.127 0.088 0.084 0.077 0.039 0.022 0.013 - 10.45 51.08 1955 0.003 0.006 0.004 0.031 0.083 0.101 0.108 0.074 0.073 0.043 0.014 0.009 - 10.45 51.08 1956 0.014 0.000 0.008 0.029 0.083 0.083 0.078 0.077 0.073 0.049 0.014 0.013 - 10.45 51.08 1957 0.005 0.021 0.036 0.049 0.076 0.129 0.150 0.093 0.065 0.031 0.019 0.006 - 10.45 51.08 1958 0.012 0.017 0.005 0.023 0.087 0.088 0.110 0.123 0.104 0.052 0.016 0.010 - 10.45 51.08 1959 0.013 0.003 0.035 0.066 0.100 0.113 0.149 0.118 0.081 0.051 0.015 0.006 - 10.45 51.08 1960 0.011 0.004 0.020 0.047 0.070 0.117 0.109 0.107 0.085 0.036 0.018 0.008 - 10.45 51.08 1961 0.004 0.015 0.041 0.049 0.051 0.081 0.127 0.102 0.105 0.070 0.027 0.007 - 10.45 51.08 1962 0.011 0.009 0.001 0.039 0.067 0.102 0.099 0.110 0.076 0.049 0.019 0.003 - 10.45 51.08 1963 0.000 0.000 0.010 0.039 0.085 0.117 0.120 0.093 0.077 0.039 0.021 0.004 - 10.45 51.08 1964 0.000 0.004 0.004 0.038 0.077 0.132 0.124 0.108 0.081 0.043 0.018 0.010 - 10.45 51.08 1965 0.009 0.001 0.006 0.039 0.062 0.081 0.098 0.094 0.068 0.047 0.014 0.007 - 10.45 51.08 1966 0.004 0.011 0.021 0.037 0.095 0.119 0.063 0.074 0.052 0.051 0.008 0.007 - 10.45 51.08 1967 0.008 0.015 0.026 0.031 0.084 0.077 0.126 0.111 0.061 0.050 0.017 0.004 - 10.45 51.08 1968 0.003 0.010 0.011 0.051 0.065 0.104 0.115 0.094 0.077 0.036 0.014 0.002 - 10.45 51.08 1969 0.004 0.005 0.001 0.023 0.063 0.069 0.116 0.121 0.050 0.041 0.023 0.001 - 10.45 51.08 1970 0.000 0.000 0.005 0.022 0.059 0.111 0.117 0.084 0.064 0.034 0.016 0.008 - 10.45 51.08 1971 0.002 0.014 0.008 0.042 0.092 0.090 0.106 0.119 0.063 0.044 0.017 0.008 - 10.45 51.08 1972 0.004 0.006 0.021 0.038 0.054 0.071 0.095 0.061 0.045 0.026 0.017 0.007 - 10.45 51.08 1973 0.004 0.010 0.015 0.025 0.073 0.106 0.122 0.098 0.079 0.031 0.010 0.002 - 10.45 51.08 1974 0.015 0.016 0.017 0.049 0.054 0.069 0.067 0.094 0.076 0.024 0.011 0.011 - 10.45 51.08 1975 0.022 0.011 0.017 0.022 0.063 0.076 0.113 0.113 0.079 0.042 0.014 0.007 - 10.45 51.08 1976 0.013 0.002 0.008 0.037 0.076 0.085 0.131 0.081 0.061 0.049 0.015 0.006 - 10.45 51.08 1977 0.003 0.013 0.026 0.020 0.062 0.072 0.070 0.051 0.041 0.028 0.018 0.005 - 10.45 51.08 1978 0.011 0.003 0.020 0.033 0.054 0.100 0.081 0.095 0.052 0.027 0.012 0.004 - 10.45 51.08 1979 0.000 0.000 0.009 0.023 0.054 0.114 0.077 0.085 0.067 0.041 0.010 0.010 - 10.45 51.08 1980 0.002 0.010 0.012 0.024 0.048 0.093 0.070 0.095 0.067 0.035 0.011 0.005 - 10.45 51.08 1981 0.004 0.003 0.017 0.040 0.045 0.067 0.093 0.067 0.051 0.024 0.011 0.003 - 10.45 51.08 1982 0.001 0.005 0.014 0.033 0.065 0.108 0.105 0.098 0.073 0.043 0.020 0.009 - 10.45 51.08 1983 0.018 0.006 0.017 0.024 0.048 0.072 0.112 0.091 0.065 0.043 0.015 0.005 - 10.45 51.08 1984 0.018 0.005 0.006 0.021 0.038 0.051 0.065 0.065 0.041 0.026 0.012 0.006 - 10.45 51.08 1985 0.001 0.002 0.009 0.038 0.071 0.080 0.088 0.086 0.061 0.044 0.012 0.009 - 10.45 51.08 1986 0.004 0.001 0.007 0.016 0.066 0.058 0.102 0.092 0.037 0.031 0.012 0.007 - 10.45 51.08 1987 0.002 0.001 0.001 0.032 0.048 0.041 0.080 0.050 0.053 0.026 0.012 0.004 - 10.45 51.08 1988 0.016 0.011 0.009 0.029 0.079 0.082 0.080 0.092 0.060 0.043 0.017 0.007 - 10.45 51.08 1989 0.014 0.010 0.022 0.033 0.061 0.078 0.090 0.082 0.062 0.041 0.015 0.005 - 10.45 51.08 1990 0.009 0.019 0.027 0.026 0.070 0.054 0.072 0.091 0.056 0.040 0.017 0.004 - 10.45 51.08 1991 0.013 0.001 0.027 0.033 0.040 0.067 0.098 0.070 0.062 0.040 0.015 0.004 - 10.45 51.08 1992 0.011 0.008 0.017 0.024 0.068 0.085 0.072 0.089 0.050 0.028 0.010 0.006 - 10.45 51.08 1993 0.008 0.001 0.012 0.037 0.081 0.053 0.050 0.060 0.035 0.023 0.005 0.004 - 10.45 51.08 1994 0.011 0.005 0.016 0.024 0.060 0.057 0.091 0.088 0.034 0.018 0.014 0.008 - 10.45 51.08 1995 0.007 0.022 0.023 0.041 0.076 0.079 0.135 0.147 0.064 0.058 0.022 0.002 - 10.45 51.08 1996 0.000 0.000 0.005 0.028 0.042 0.072 0.064 0.081 0.045 0.035 0.021 0.005 - 10.45 51.08 1997 0.000 0.009 0.020 0.020 0.069 0.090 0.085 0.127 0.099 0.049 0.014 0.008 - 10.45 51.08 1998 0.021 0.013 0.026 0.045 0.095 0.120 0.115 0.131 0.059 0.028 0.012 0.004 - 10.45 51.08 1999 0.021 0.006 0.023 0.049 0.099 0.101 0.106 0.123 0.117 0.059 0.019 0.009 - 10.45 51.08 2000 0.008 0.013 0.019 0.042 0.116 0.111 0.093 0.114 0.066 0.041 0.024 0.016 - 10.45 51.08 2001 0.009 0.014 0.014 0.025 0.074 0.079 0.090 0.130 0.066 0.054 0.018 0.005 - 10.45 51.08 2002 0.003 0.026 0.019 0.028 0.061 0.082 0.089 0.082 0.068 0.025 0.014 0.005 - 10.45 51.08 2003 0.006 0.004 0.019 0.044 0.109 0.121 0.127 0.142 0.079 0.036 0.017 0.009 - 10.45 51.08 2004 0.011 0.015 0.017 0.045 0.052 0.096 0.100 0.127 0.081 0.050 0.024 0.006 - 10.45 51.08 2005 0.018 0.001 0.011 0.051 0.079 0.111 0.123 0.096 0.091 0.052 0.032 0.008 - 10.45 51.08 2006 0.003 0.004 0.003 0.042 0.100 0.100 0.144 0.104 0.082 0.062 0.030 0.019 - 10.45 51.08 2007 0.029 0.017 0.030 0.061 0.099 0.106 0.089 0.065 0.048 0.026 0.011 0.006 - 10.45 51.08 2008 0.017 0.018 0.024 0.027 0.094 0.119 0.115 0.110 0.068 0.039 0.015 0.005 - 10.45 51.08 2009 0.001 0.007 0.020 0.067 0.076 0.085 0.119 0.114 0.077 0.036 0.016 0.007 - 10.45 51.08 2010 0.000 0.001 0.019 0.054 0.056 0.101 0.133 0.061 0.046 0.024 0.015 0.000 - 10.45 51.08 2011 0.009 0.007 0.020 0.075 0.095 0.110 0.095 0.100 0.078 0.049 0.019 0.012 - 10.45 51.08 2012 0.018 0.001 0.036 0.047 0.099 0.091 0.091 0.104 0.071 0.042 0.019 0.006 diff --git a/rLPJGUESS/inst/extdata/outputsForTests/run_nyear_spinup/outDirectory/mrunoff.out b/rLPJGUESS/inst/extdata/outputsForTests/run_nyear_spinup/outDirectory/mrunoff.out deleted file mode 100644 index 4bd8497..0000000 --- a/rLPJGUESS/inst/extdata/outputsForTests/run_nyear_spinup/outDirectory/mrunoff.out +++ /dev/null @@ -1,63 +0,0 @@ - Lon Lat Year Jan Feb Mar Apr May Jun Jul Aug Sep Oct Nov Dec - 10.45 51.08 1951 4.803 23.669 21.623 2.153 0.000 51.286 0.000 0.253 0.823 0.000 36.420 9.328 - 10.45 51.08 1952 21.234 31.103 52.555 23.733 3.767 0.521 0.000 0.000 66.513 26.846 69.871 28.706 - 10.45 51.08 1953 31.031 49.220 0.310 0.000 0.000 1.648 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1954 9.966 0.000 0.000 12.670 0.000 0.000 0.000 0.000 0.000 0.000 0.000 28.829 - 10.45 51.08 1955 30.794 29.079 38.065 13.988 0.000 0.000 0.000 14.209 0.000 0.000 0.000 17.261 - 10.45 51.08 1956 19.654 0.000 50.907 28.644 0.000 10.170 93.765 5.659 0.000 5.236 19.945 12.217 - 10.45 51.08 1957 24.867 27.818 12.431 2.772 0.000 0.000 0.000 0.000 0.000 0.000 12.209 0.000 - 10.45 51.08 1958 7.191 0.000 68.242 14.263 0.000 21.686 15.551 0.000 0.000 0.000 0.000 5.701 - 10.45 51.08 1959 0.000 3.650 2.099 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1960 3.551 0.000 0.000 0.000 4.530 0.000 0.000 0.000 0.000 21.976 0.000 16.347 - 10.45 51.08 1961 11.798 9.870 2.059 41.379 43.396 48.442 0.000 0.000 0.000 0.000 0.000 2.904 - 10.45 51.08 1962 0.000 3.973 1.451 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1963 0.000 0.000 1.006 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1964 0.000 0.000 0.000 0.000 23.697 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1965 0.000 0.000 6.265 0.000 0.000 0.274 0.000 0.000 0.000 0.000 0.000 8.065 - 10.45 51.08 1966 0.287 15.936 0.000 0.000 0.000 0.000 11.805 11.285 0.000 22.912 12.198 10.832 - 10.45 51.08 1967 0.444 1.444 23.575 5.985 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1968 11.846 4.570 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1969 0.000 0.000 1.160 21.739 22.310 6.304 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1970 0.000 25.893 5.678 1.275 0.000 0.000 0.000 1.876 0.000 0.000 0.000 0.000 - 10.45 51.08 1971 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1972 0.000 0.000 2.295 0.000 0.000 0.000 16.923 32.601 0.000 0.000 0.000 0.000 - 10.45 51.08 1973 0.000 0.000 0.976 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 2.571 - 10.45 51.08 1974 0.000 0.921 0.000 0.000 0.000 0.000 0.000 0.000 0.000 9.375 0.000 10.545 - 10.45 51.08 1975 0.000 0.000 0.000 6.847 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1976 0.469 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1977 0.000 0.000 5.254 0.000 0.000 0.000 0.000 43.225 0.206 0.000 34.052 7.266 - 10.45 51.08 1978 0.000 0.000 11.843 2.469 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1979 0.000 0.000 49.046 17.609 1.717 0.000 0.000 0.000 0.000 0.000 0.000 2.688 - 10.45 51.08 1980 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1981 0.000 3.138 2.718 0.000 5.959 0.414 0.000 19.130 0.066 11.258 9.037 15.099 - 10.45 51.08 1982 12.824 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1983 0.000 0.000 0.000 46.217 7.450 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1984 0.000 0.000 0.000 4.636 21.816 8.608 0.000 0.000 0.000 4.225 24.198 0.000 - 10.45 51.08 1985 3.261 0.000 6.005 2.928 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1986 0.000 0.000 8.317 10.178 0.000 0.000 0.000 0.000 0.000 11.339 0.000 8.382 - 10.45 51.08 1987 15.883 4.815 39.847 0.000 0.000 28.387 0.000 0.000 28.861 0.000 15.110 21.165 - 10.45 51.08 1988 17.893 21.363 55.366 15.458 0.000 0.000 0.000 0.000 0.000 0.000 0.000 4.176 - 10.45 51.08 1989 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 7.107 - 10.45 51.08 1990 0.000 0.000 3.170 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1991 0.000 0.000 0.000 0.000 0.000 0.000 0.000 1.579 0.000 0.000 0.000 0.000 - 10.45 51.08 1992 0.000 0.000 22.591 0.000 0.000 0.000 15.505 0.000 0.000 0.000 6.508 10.315 - 10.45 51.08 1993 1.947 1.221 0.000 0.000 0.000 2.101 22.563 0.000 0.000 0.000 0.000 26.101 - 10.45 51.08 1994 0.319 5.752 27.700 66.846 0.000 0.000 0.000 0.000 0.000 0.000 3.627 1.397 - 10.45 51.08 1995 1.262 23.982 12.348 18.706 18.487 45.654 32.337 10.531 41.346 7.807 13.516 9.672 - 10.45 51.08 1996 1.700 15.956 12.728 8.152 42.353 19.158 53.152 57.079 21.238 32.617 36.955 38.691 - 10.45 51.08 1997 8.937 32.312 29.311 11.833 1.389 0.000 28.788 0.910 0.000 0.000 3.755 24.100 - 10.45 51.08 1998 12.802 7.720 21.980 12.158 1.157 0.000 0.000 0.000 0.000 54.554 54.057 6.266 - 10.45 51.08 1999 16.953 16.268 18.108 9.483 0.000 0.000 4.180 0.000 0.000 0.000 0.000 14.409 - 10.45 51.08 2000 24.036 39.792 41.615 3.746 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 2001 0.000 0.000 46.306 15.596 0.000 0.000 0.000 0.000 0.000 0.000 5.612 7.026 - 10.45 51.08 2002 10.069 28.180 28.884 5.155 10.225 22.425 13.447 0.194 0.000 9.773 79.192 86.219 - 10.45 51.08 2003 25.531 9.372 10.297 0.654 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 2004 0.000 0.000 0.000 0.000 56.553 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 2005 0.000 2.611 0.356 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 2006 0.000 0.000 3.538 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 2007 0.000 0.000 0.000 0.000 0.000 0.000 0.000 57.354 48.254 0.000 0.000 0.847 - 10.45 51.08 2008 0.000 0.000 0.000 11.389 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 2009 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 6.241 31.361 - 10.45 51.08 2010 2.389 22.545 0.000 0.000 4.964 0.000 3.475 29.646 9.983 0.889 38.566 3.570 - 10.45 51.08 2011 74.287 7.832 3.354 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 2012 4.050 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 diff --git a/rLPJGUESS/inst/extdata/outputsForTests/run_nyear_spinup/outDirectory/mwcont_lower.out b/rLPJGUESS/inst/extdata/outputsForTests/run_nyear_spinup/outDirectory/mwcont_lower.out deleted file mode 100644 index 3686409..0000000 --- a/rLPJGUESS/inst/extdata/outputsForTests/run_nyear_spinup/outDirectory/mwcont_lower.out +++ /dev/null @@ -1,63 +0,0 @@ - Lon Lat Year Jan Feb Mar Apr May Jun Jul Aug Sep Oct Nov Dec - 10.45 51.08 1951 0.958 1.000 1.000 0.993 0.951 0.958 0.969 0.978 0.981 0.972 0.999 1.000 - 10.45 51.08 1952 1.000 1.000 0.997 0.973 0.979 0.947 0.793 0.621 0.672 0.919 1.000 0.999 - 10.45 51.08 1953 1.000 0.999 0.995 0.961 0.854 0.753 0.730 0.687 0.592 0.544 0.563 0.590 - 10.45 51.08 1954 0.709 0.800 0.903 0.988 0.925 0.754 0.670 0.700 0.720 0.825 0.910 0.987 - 10.45 51.08 1955 1.000 0.997 0.996 0.992 0.920 0.788 0.677 0.729 0.724 0.724 0.780 0.912 - 10.45 51.08 1956 1.000 1.000 0.999 0.995 0.928 0.843 0.962 0.980 0.975 0.984 1.000 1.000 - 10.45 51.08 1957 1.000 1.000 0.997 0.971 0.861 0.641 0.402 0.303 0.262 0.323 0.405 0.495 - 10.45 51.08 1958 0.749 0.887 0.993 0.995 0.963 0.866 0.819 0.638 0.501 0.492 0.631 0.752 - 10.45 51.08 1959 0.930 0.997 0.996 0.952 0.824 0.598 0.228 0.002 0.000 0.001 0.097 0.176 - 10.45 51.08 1960 0.327 0.487 0.615 0.646 0.595 0.436 0.130 0.001 0.002 0.075 0.288 0.449 - 10.45 51.08 1961 0.674 0.895 0.983 0.993 0.984 0.954 0.672 0.464 0.237 0.029 0.011 0.106 - 10.45 51.08 1962 0.245 0.410 0.499 0.667 0.649 0.465 0.175 0.004 0.001 0.000 0.000 0.020 - 10.45 51.08 1963 0.042 0.047 0.184 0.355 0.295 0.077 0.004 0.022 0.003 0.026 0.089 0.173 - 10.45 51.08 1964 0.208 0.345 0.420 0.562 0.570 0.336 0.036 0.000 0.000 0.002 0.018 0.055 - 10.45 51.08 1965 0.135 0.222 0.326 0.469 0.515 0.412 0.281 0.131 0.014 0.001 0.008 0.191 - 10.45 51.08 1966 0.368 0.517 0.611 0.740 0.689 0.433 0.336 0.289 0.291 0.252 0.430 0.617 - 10.45 51.08 1967 0.825 0.948 0.998 0.989 0.873 0.701 0.502 0.200 0.112 0.113 0.153 0.270 - 10.45 51.08 1968 0.390 0.530 0.687 0.725 0.670 0.502 0.178 0.002 0.002 0.052 0.106 0.176 - 10.45 51.08 1969 0.266 0.392 0.482 0.733 0.900 0.833 0.624 0.235 0.146 0.097 0.127 0.167 - 10.45 51.08 1970 0.185 0.376 0.586 0.786 0.917 0.813 0.491 0.308 0.248 0.241 0.424 0.555 - 10.45 51.08 1971 0.614 0.754 0.856 0.887 0.779 0.613 0.332 0.008 0.000 0.003 0.026 0.125 - 10.45 51.08 1972 0.163 0.201 0.249 0.335 0.308 0.223 0.124 0.112 0.106 0.074 0.128 0.216 - 10.45 51.08 1973 0.245 0.370 0.517 0.592 0.589 0.369 0.055 0.000 0.003 0.040 0.141 0.285 - 10.45 51.08 1974 0.413 0.514 0.637 0.606 0.529 0.410 0.370 0.208 0.080 0.065 0.264 0.498 - 10.45 51.08 1975 0.672 0.753 0.836 0.972 0.904 0.719 0.537 0.197 0.012 0.005 0.018 0.069 - 10.45 51.08 1976 0.230 0.391 0.454 0.477 0.345 0.136 0.000 0.000 0.000 0.005 0.029 0.097 - 10.45 51.08 1977 0.175 0.314 0.434 0.540 0.489 0.302 0.195 0.244 0.326 0.353 0.533 0.708 - 10.45 51.08 1978 0.847 0.905 0.991 0.982 0.927 0.763 0.578 0.381 0.279 0.315 0.327 0.406 - 10.45 51.08 1979 0.512 0.541 0.789 0.996 0.956 0.759 0.581 0.441 0.279 0.200 0.231 0.357 - 10.45 51.08 1980 0.494 0.682 0.751 0.873 0.853 0.638 0.509 0.282 0.045 0.005 0.037 0.128 - 10.45 51.08 1981 0.280 0.384 0.525 0.552 0.526 0.465 0.344 0.221 0.173 0.243 0.392 0.605 - 10.45 51.08 1982 0.765 0.858 0.920 0.961 0.878 0.596 0.319 0.058 0.000 0.025 0.041 0.104 - 10.45 51.08 1983 0.190 0.287 0.346 0.541 0.606 0.578 0.311 0.031 0.001 0.000 0.000 0.010 - 10.45 51.08 1984 0.069 0.228 0.318 0.458 0.525 0.642 0.529 0.454 0.425 0.580 0.662 0.753 - 10.45 51.08 1985 0.801 0.910 0.969 0.982 0.901 0.688 0.498 0.261 0.098 0.002 0.001 0.039 - 10.45 51.08 1986 0.175 0.255 0.369 0.587 0.621 0.632 0.411 0.173 0.078 0.044 0.094 0.144 - 10.45 51.08 1987 0.345 0.471 0.609 0.782 0.707 0.774 0.749 0.781 0.780 0.816 0.926 0.999 - 10.45 51.08 1988 1.000 1.000 0.999 0.985 0.849 0.579 0.406 0.213 0.016 0.000 0.004 0.139 - 10.45 51.08 1989 0.331 0.391 0.539 0.582 0.498 0.244 0.027 0.000 0.001 0.004 0.066 0.200 - 10.45 51.08 1990 0.321 0.413 0.536 0.539 0.442 0.226 0.108 0.000 0.002 0.001 0.032 0.144 - 10.45 51.08 1991 0.309 0.355 0.415 0.405 0.329 0.137 0.004 0.006 0.000 0.000 0.004 0.028 - 10.45 51.08 1992 0.111 0.166 0.271 0.421 0.332 0.069 0.013 0.000 0.004 0.006 0.079 0.266 - 10.45 51.08 1993 0.416 0.524 0.644 0.660 0.456 0.341 0.260 0.249 0.209 0.250 0.367 0.562 - 10.45 51.08 1994 0.810 0.965 0.999 0.986 0.873 0.809 0.597 0.370 0.370 0.392 0.472 0.632 - 10.45 51.08 1995 0.770 0.986 1.000 1.000 1.000 0.998 1.000 1.000 0.999 1.000 1.000 1.000 - 10.45 51.08 1996 1.000 1.000 1.000 1.000 0.997 0.997 0.999 0.999 1.000 1.000 1.000 1.000 - 10.45 51.08 1997 0.999 0.999 0.999 0.998 0.991 0.943 0.915 0.970 0.940 0.936 0.990 1.000 - 10.45 51.08 1998 1.000 1.000 0.999 0.996 0.961 0.884 0.812 0.731 0.749 0.958 1.000 1.000 - 10.45 51.08 1999 1.000 1.000 0.999 0.996 0.952 0.911 0.931 0.887 0.828 0.795 0.835 0.975 - 10.45 51.08 2000 1.000 0.999 0.998 0.988 0.895 0.738 0.609 0.512 0.477 0.544 0.623 0.698 - 10.45 51.08 2001 0.779 0.857 0.962 0.995 0.949 0.847 0.798 0.677 0.594 0.642 0.730 0.975 - 10.45 51.08 2002 1.000 0.999 0.997 0.980 0.980 0.948 0.866 0.858 0.817 0.917 1.000 1.000 - 10.45 51.08 2003 1.000 1.000 0.998 0.976 0.855 0.691 0.446 0.099 0.002 0.009 0.027 0.116 - 10.45 51.08 2004 0.248 0.363 0.416 0.417 0.461 0.343 0.193 0.020 0.001 0.001 0.021 0.088 - 10.45 51.08 2005 0.164 0.290 0.406 0.476 0.396 0.157 0.001 0.003 0.000 0.001 0.008 0.049 - 10.45 51.08 2006 0.120 0.169 0.234 0.364 0.279 0.119 0.001 0.003 0.003 0.002 0.031 0.077 - 10.45 51.08 2007 0.186 0.315 0.469 0.495 0.229 0.038 0.009 0.028 0.015 0.054 0.201 0.449 - 10.45 51.08 2008 0.546 0.665 0.803 0.964 0.873 0.570 0.257 0.011 0.001 0.010 0.069 0.203 - 10.45 51.08 2009 0.287 0.358 0.568 0.617 0.541 0.419 0.237 0.033 0.002 0.039 0.202 0.441 - 10.45 51.08 2010 0.587 0.666 0.830 0.852 0.796 0.774 0.402 0.405 0.527 0.548 0.666 0.810 - 10.45 51.08 2011 0.940 1.000 0.995 0.912 0.620 0.209 0.025 0.000 0.000 0.004 0.005 0.048 - 10.45 51.08 2012 0.211 0.310 0.355 0.312 0.152 0.003 0.013 0.000 0.000 0.000 0.009 0.100 diff --git a/rLPJGUESS/inst/extdata/outputsForTests/run_nyear_spinup/outDirectory/mwcont_upper.out b/rLPJGUESS/inst/extdata/outputsForTests/run_nyear_spinup/outDirectory/mwcont_upper.out deleted file mode 100644 index 84c1f98..0000000 --- a/rLPJGUESS/inst/extdata/outputsForTests/run_nyear_spinup/outDirectory/mwcont_upper.out +++ /dev/null @@ -1,63 +0,0 @@ - Lon Lat Year Jan Feb Mar Apr May Jun Jul Aug Sep Oct Nov Dec - 10.45 51.08 1951 0.920 0.886 0.815 0.454 0.144 0.717 0.495 0.580 0.431 0.371 0.776 0.923 - 10.45 51.08 1952 0.911 0.927 0.910 0.716 0.678 0.365 0.015 0.109 0.744 0.937 0.930 0.938 - 10.45 51.08 1953 0.919 0.944 0.712 0.377 0.210 0.406 0.620 0.412 0.192 0.262 0.534 0.550 - 10.45 51.08 1954 0.779 0.877 0.748 0.655 0.353 0.159 0.535 0.676 0.607 0.765 0.771 0.835 - 10.45 51.08 1955 0.941 0.929 0.919 0.717 0.390 0.300 0.556 0.838 0.659 0.603 0.847 0.885 - 10.45 51.08 1956 0.909 0.868 0.830 0.718 0.513 0.717 0.875 0.723 0.557 0.603 0.809 0.821 - 10.45 51.08 1957 0.900 0.840 0.723 0.508 0.303 0.243 0.392 0.507 0.475 0.845 0.899 0.899 - 10.45 51.08 1958 0.926 0.842 0.899 0.745 0.577 0.691 0.627 0.403 0.284 0.599 0.889 0.885 - 10.45 51.08 1959 0.911 0.809 0.617 0.465 0.277 0.195 0.005 0.221 0.002 0.073 0.746 0.797 - 10.45 51.08 1960 0.873 0.889 0.765 0.489 0.576 0.387 0.041 0.150 0.230 0.698 0.921 0.927 - 10.45 51.08 1961 0.939 0.876 0.630 0.768 0.862 0.749 0.085 0.110 0.048 0.017 0.305 0.769 - 10.45 51.08 1962 0.897 0.896 0.911 0.671 0.491 0.118 0.206 0.021 0.116 0.006 0.043 0.377 - 10.45 51.08 1963 0.521 0.531 0.803 0.701 0.387 0.256 0.300 0.487 0.268 0.480 0.676 0.833 - 10.45 51.08 1964 0.833 0.840 0.734 0.680 0.661 0.311 0.075 0.058 0.021 0.146 0.379 0.541 - 10.45 51.08 1965 0.735 0.816 0.862 0.619 0.581 0.571 0.481 0.384 0.300 0.078 0.292 0.829 - 10.45 51.08 1966 0.903 0.930 0.748 0.679 0.379 0.224 0.812 0.647 0.700 0.555 0.917 0.916 - 10.45 51.08 1967 0.918 0.809 0.731 0.595 0.272 0.508 0.296 0.183 0.522 0.610 0.679 0.775 - 10.45 51.08 1968 0.911 0.882 0.837 0.496 0.545 0.263 0.090 0.059 0.173 0.684 0.769 0.746 - 10.45 51.08 1969 0.768 0.793 0.894 0.822 0.753 0.739 0.313 0.226 0.684 0.511 0.615 0.702 - 10.45 51.08 1970 0.733 0.933 0.897 0.811 0.669 0.282 0.154 0.590 0.556 0.642 0.914 0.912 - 10.45 51.08 1971 0.883 0.798 0.698 0.530 0.358 0.371 0.085 0.048 0.030 0.199 0.545 0.869 - 10.45 51.08 1972 0.802 0.800 0.773 0.602 0.589 0.648 0.582 0.871 0.629 0.480 0.723 0.850 - 10.45 51.08 1973 0.811 0.871 0.811 0.608 0.451 0.097 0.057 0.020 0.239 0.569 0.906 0.912 - 10.45 51.08 1974 0.876 0.828 0.805 0.417 0.442 0.473 0.675 0.393 0.315 0.557 0.886 0.920 - 10.45 51.08 1975 0.891 0.822 0.763 0.727 0.566 0.394 0.348 0.121 0.226 0.197 0.376 0.520 - 10.45 51.08 1976 0.842 0.855 0.676 0.480 0.188 0.383 0.022 0.033 0.025 0.320 0.464 0.630 - 10.45 51.08 1977 0.656 0.728 0.788 0.685 0.406 0.364 0.700 0.857 0.828 0.817 0.918 0.916 - 10.45 51.08 1978 0.863 0.808 0.722 0.514 0.504 0.190 0.219 0.261 0.412 0.790 0.737 0.800 - 10.45 51.08 1979 0.864 0.889 0.912 0.796 0.537 0.273 0.420 0.300 0.179 0.210 0.630 0.873 - 10.45 51.08 1980 0.877 0.820 0.662 0.626 0.440 0.208 0.380 0.057 0.134 0.315 0.535 0.791 - 10.45 51.08 1981 0.894 0.899 0.833 0.567 0.803 0.737 0.347 0.627 0.538 0.919 0.902 0.943 - 10.45 51.08 1982 0.919 0.866 0.668 0.452 0.379 0.088 0.098 0.045 0.001 0.406 0.498 0.561 - 10.45 51.08 1983 0.605 0.656 0.645 0.849 0.715 0.571 0.109 0.283 0.150 0.072 0.031 0.273 - 10.45 51.08 1984 0.498 0.806 0.731 0.780 0.725 0.757 0.565 0.679 0.791 0.903 0.903 0.910 - 10.45 51.08 1985 0.916 0.878 0.750 0.570 0.265 0.254 0.203 0.155 0.143 0.001 0.077 0.497 - 10.45 51.08 1986 0.840 0.859 0.843 0.868 0.645 0.737 0.208 0.195 0.490 0.652 0.897 0.828 - 10.45 51.08 1987 0.941 0.923 0.946 0.654 0.535 0.892 0.615 0.795 0.734 0.827 0.852 0.924 - 10.45 51.08 1988 0.890 0.854 0.883 0.691 0.228 0.114 0.513 0.204 0.045 0.046 0.170 0.757 - 10.45 51.08 1989 0.877 0.754 0.741 0.537 0.386 0.219 0.069 0.043 0.093 0.266 0.757 0.883 - 10.45 51.08 1990 0.884 0.795 0.769 0.579 0.277 0.512 0.453 0.058 0.210 0.131 0.410 0.737 - 10.45 51.08 1991 0.776 0.730 0.647 0.404 0.342 0.160 0.055 0.545 0.025 0.020 0.156 0.374 - 10.45 51.08 1992 0.706 0.700 0.734 0.668 0.314 0.274 0.595 0.110 0.295 0.241 0.646 0.931 - 10.45 51.08 1993 0.924 0.923 0.793 0.510 0.223 0.783 0.742 0.602 0.619 0.716 0.877 0.916 - 10.45 51.08 1994 0.916 0.868 0.842 0.744 0.574 0.626 0.554 0.412 0.727 0.727 0.801 0.915 - 10.45 51.08 1995 0.903 0.886 0.711 0.643 0.628 0.751 0.632 0.526 0.763 0.726 0.678 0.718 - 10.45 51.08 1996 0.804 0.813 0.719 0.605 0.840 0.776 0.810 0.816 0.835 0.823 0.915 0.917 - 10.45 51.08 1997 0.918 0.892 0.821 0.642 0.388 0.062 0.406 0.432 0.222 0.351 0.621 0.814 - 10.45 51.08 1998 0.859 0.760 0.759 0.574 0.421 0.174 0.190 0.072 0.624 0.924 0.939 0.892 - 10.45 51.08 1999 0.845 0.811 0.761 0.620 0.339 0.523 0.670 0.381 0.199 0.220 0.709 0.891 - 10.45 51.08 2000 0.902 0.908 0.868 0.646 0.314 0.083 0.274 0.267 0.581 0.715 0.692 0.692 - 10.45 51.08 2001 0.685 0.742 0.798 0.776 0.545 0.437 0.655 0.210 0.387 0.540 0.768 0.927 - 10.45 51.08 2002 0.895 0.841 0.868 0.683 0.758 0.712 0.634 0.769 0.626 0.827 0.922 0.925 - 10.45 51.08 2003 0.927 0.898 0.776 0.441 0.297 0.460 0.105 0.014 0.229 0.343 0.505 0.777 - 10.45 51.08 2004 0.834 0.858 0.698 0.511 0.808 0.383 0.395 0.045 0.063 0.126 0.391 0.750 - 10.45 51.08 2005 0.797 0.884 0.853 0.583 0.413 0.071 0.098 0.286 0.103 0.189 0.272 0.508 - 10.45 51.08 2006 0.600 0.617 0.746 0.662 0.403 0.421 0.260 0.204 0.224 0.257 0.437 0.522 - 10.45 51.08 2007 0.692 0.749 0.703 0.439 0.209 0.473 0.479 0.757 0.613 0.836 0.875 0.915 - 10.45 51.08 2008 0.861 0.764 0.748 0.789 0.350 0.065 0.183 0.018 0.075 0.379 0.712 0.903 - 10.45 51.08 2009 0.853 0.801 0.804 0.547 0.611 0.431 0.303 0.078 0.199 0.492 0.893 0.938 - 10.45 51.08 2010 0.949 0.949 0.801 0.492 0.645 0.384 0.347 0.849 0.702 0.892 0.927 0.941 - 10.45 51.08 2011 0.940 0.838 0.684 0.385 0.032 0.090 0.348 0.065 0.061 0.224 0.268 0.496 - 10.45 51.08 2012 0.823 0.854 0.627 0.368 0.181 0.319 0.469 0.071 0.033 0.049 0.271 0.768 diff --git a/rLPJGUESS/inst/extdata/outputsForTests/run_nyear_spinup/outDirectory/nflux.out b/rLPJGUESS/inst/extdata/outputsForTests/run_nyear_spinup/outDirectory/nflux.out deleted file mode 100644 index 2544c86..0000000 --- a/rLPJGUESS/inst/extdata/outputsForTests/run_nyear_spinup/outDirectory/nflux.out +++ /dev/null @@ -1,63 +0,0 @@ - Lon Lat Year dep fix fert flux leach NEE - 10.45 51.08 1951 -11.23 -2.50 -0.00 5.24 0.42 -8.07 - 10.45 51.08 1952 -11.23 -2.32 -0.00 7.71 0.81 -5.03 - 10.45 51.08 1953 -11.23 -2.33 -0.00 5.90 0.26 -7.41 - 10.45 51.08 1954 -11.23 -2.79 -0.00 5.12 0.16 -8.74 - 10.45 51.08 1955 -11.23 -2.84 -0.00 2.55 0.40 -11.11 - 10.45 51.08 1956 -11.23 -3.20 -0.00 1.67 0.49 -12.27 - 10.45 51.08 1957 -11.23 -3.03 -0.00 4.64 0.33 -9.30 - 10.45 51.08 1958 -11.23 -2.93 -0.00 3.24 0.19 -10.74 - 10.45 51.08 1959 -11.23 -3.01 -0.00 8.62 0.03 -5.59 - 10.45 51.08 1960 -14.10 -2.66 -0.00 7.06 0.00 -9.70 - 10.45 51.08 1961 -14.10 -3.12 -0.00 7.41 0.08 -9.72 - 10.45 51.08 1962 -14.10 -3.25 -0.00 11.47 0.02 -5.86 - 10.45 51.08 1963 -14.10 -2.34 -0.00 6.10 0.00 -10.34 - 10.45 51.08 1964 -14.10 -2.24 -0.00 7.14 0.00 -9.20 - 10.45 51.08 1965 -14.10 -2.77 -0.00 5.79 0.01 -11.07 - 10.45 51.08 1966 -14.10 -3.10 -0.00 3.42 0.02 -13.76 - 10.45 51.08 1967 -14.10 -3.04 -0.00 5.44 0.16 -11.54 - 10.45 51.08 1968 -14.10 -3.10 -0.00 6.39 0.01 -10.80 - 10.45 51.08 1969 -14.10 -2.71 -0.00 4.61 0.01 -12.19 - 10.45 51.08 1970 -16.97 -2.91 -0.00 4.98 0.01 -14.89 - 10.45 51.08 1971 -16.97 -2.92 -0.00 6.35 0.00 -13.53 - 10.45 51.08 1972 -16.97 -2.85 -0.00 1.65 0.00 -18.18 - 10.45 51.08 1973 -16.97 -2.65 -0.00 6.21 0.00 -13.40 - 10.45 51.08 1974 -16.97 -2.80 -0.00 2.33 0.01 -17.43 - 10.45 51.08 1975 -16.97 -2.47 -0.00 5.63 0.03 -13.77 - 10.45 51.08 1976 -16.97 -2.52 -0.00 5.91 0.00 -13.58 - 10.45 51.08 1977 -16.97 -2.48 -0.00 2.85 0.01 -16.59 - 10.45 51.08 1978 -16.97 -3.07 -0.00 4.48 0.08 -15.48 - 10.45 51.08 1979 -16.97 -2.82 -0.00 4.52 0.10 -15.17 - 10.45 51.08 1980 -17.99 -2.84 -0.00 5.20 0.00 -15.64 - 10.45 51.08 1981 -17.99 -2.81 -0.00 1.61 0.02 -19.18 - 10.45 51.08 1982 -17.99 -2.34 -0.00 5.63 0.01 -14.69 - 10.45 51.08 1983 -17.99 -1.99 -0.00 5.07 0.01 -14.90 - 10.45 51.08 1984 -17.99 -2.74 -0.00 1.39 0.02 -19.32 - 10.45 51.08 1985 -17.99 -2.62 -0.00 5.47 0.05 -15.10 - 10.45 51.08 1986 -17.99 -2.30 -0.00 3.56 0.02 -16.71 - 10.45 51.08 1987 -17.99 -3.06 -0.00 1.35 0.16 -19.55 - 10.45 51.08 1988 -17.99 -2.47 -0.00 5.37 0.47 -14.63 - 10.45 51.08 1989 -17.99 -2.53 -0.00 4.82 0.00 -15.71 - 10.45 51.08 1990 -19.66 -2.51 -0.00 4.53 0.00 -17.63 - 10.45 51.08 1991 -19.66 -2.75 -0.00 4.99 0.00 -17.41 - 10.45 51.08 1992 -19.66 -1.80 -0.00 4.24 0.01 -17.20 - 10.45 51.08 1993 -19.66 -2.26 -0.00 2.58 0.01 -19.32 - 10.45 51.08 1994 -19.66 -2.32 -0.00 1.67 0.24 -20.06 - 10.45 51.08 1995 -19.66 -0.00 -0.00 0.91 1.01 -17.74 - 10.45 51.08 1996 -19.66 -1.74 -0.00 1.29 0.95 -19.16 - 10.45 51.08 1997 -19.66 -2.69 -0.00 6.81 0.49 -15.06 - 10.45 51.08 1998 -19.66 -3.05 -0.00 6.19 0.47 -16.05 - 10.45 51.08 1999 -19.66 -2.47 -0.00 3.94 0.34 -17.84 - 10.45 51.08 2000 -21.34 -2.33 -0.00 5.70 0.48 -17.50 - 10.45 51.08 2001 -21.34 -2.69 -0.00 3.96 0.24 -19.84 - 10.45 51.08 2002 -21.34 -2.92 -0.00 1.57 0.71 -21.97 - 10.45 51.08 2003 -21.34 -2.37 -0.00 6.24 0.19 -17.28 - 10.45 51.08 2004 -21.34 -3.02 -0.00 6.03 0.00 -18.34 - 10.45 51.08 2005 -21.34 -2.61 -0.00 6.10 0.01 -17.84 - 10.45 51.08 2006 -21.34 -2.40 -0.00 5.80 0.00 -17.94 - 10.45 51.08 2007 -21.34 -2.43 -0.00 3.85 0.00 -19.92 - 10.45 51.08 2008 -21.34 -2.96 -0.00 6.11 0.01 -18.18 - 10.45 51.08 2009 -21.34 -2.35 -0.00 5.42 0.01 -18.26 - 10.45 51.08 2010 -20.03 -2.68 -0.00 3.92 0.02 -18.77 - 10.45 51.08 2011 -20.03 -2.88 -0.00 6.63 0.11 -16.16 - 10.45 51.08 2012 -20.03 -2.72 -0.00 5.73 0.00 -17.02 diff --git a/rLPJGUESS/inst/extdata/outputsForTests/run_nyear_spinup/outDirectory/ngases.out b/rLPJGUESS/inst/extdata/outputsForTests/run_nyear_spinup/outDirectory/ngases.out deleted file mode 100644 index 03500ac..0000000 --- a/rLPJGUESS/inst/extdata/outputsForTests/run_nyear_spinup/outDirectory/ngases.out +++ /dev/null @@ -1,63 +0,0 @@ - Lon Lat Year NH3 NO NO2 N2O N2 NSoil Total - 10.45 51.08 1951 1.090 1.400 0.351 0.162 1.617 0.619 5.239 - 10.45 51.08 1952 1.594 2.046 0.513 0.236 2.364 0.960 7.713 - 10.45 51.08 1953 1.159 1.488 0.373 0.172 1.718 0.989 5.898 - 10.45 51.08 1954 0.930 1.194 0.299 0.138 1.379 1.177 5.117 - 10.45 51.08 1955 0.387 0.496 0.125 0.057 0.573 0.911 2.549 - 10.45 51.08 1956 0.180 0.232 0.058 0.027 0.268 0.910 1.675 - 10.45 51.08 1957 0.780 1.002 0.251 0.116 1.158 1.329 4.637 - 10.45 51.08 1958 0.455 0.584 0.146 0.067 0.674 1.311 3.238 - 10.45 51.08 1959 1.673 2.148 0.539 0.248 2.481 1.536 8.625 - 10.45 51.08 1960 1.355 1.740 0.436 0.201 2.010 1.314 7.057 - 10.45 51.08 1961 1.412 1.813 0.455 0.209 2.094 1.430 7.413 - 10.45 51.08 1962 2.358 3.027 0.759 0.350 3.497 1.482 11.473 - 10.45 51.08 1963 1.111 1.426 0.358 0.165 1.647 1.391 6.097 - 10.45 51.08 1964 1.320 1.694 0.425 0.196 1.957 1.551 7.143 - 10.45 51.08 1965 1.065 1.367 0.343 0.158 1.579 1.279 5.791 - 10.45 51.08 1966 0.488 0.626 0.157 0.072 0.724 1.351 3.418 - 10.45 51.08 1967 0.906 1.163 0.292 0.134 1.343 1.599 5.437 - 10.45 51.08 1968 1.148 1.473 0.370 0.170 1.702 1.526 6.389 - 10.45 51.08 1969 0.771 0.989 0.248 0.114 1.143 1.344 4.609 - 10.45 51.08 1970 0.844 1.083 0.272 0.125 1.251 1.406 4.981 - 10.45 51.08 1971 1.119 1.437 0.360 0.166 1.659 1.612 6.353 - 10.45 51.08 1972 0.130 0.166 0.042 0.019 0.192 1.097 1.647 - 10.45 51.08 1973 1.073 1.378 0.346 0.159 1.591 1.667 6.213 - 10.45 51.08 1974 0.243 0.312 0.078 0.036 0.360 1.296 2.326 - 10.45 51.08 1975 0.945 1.213 0.304 0.140 1.401 1.629 5.633 - 10.45 51.08 1976 1.042 1.337 0.335 0.154 1.545 1.494 5.908 - 10.45 51.08 1977 0.436 0.560 0.140 0.065 0.647 1.000 2.848 - 10.45 51.08 1978 0.734 0.943 0.236 0.109 1.089 1.369 4.480 - 10.45 51.08 1979 0.734 0.943 0.236 0.109 1.089 1.410 4.521 - 10.45 51.08 1980 0.912 1.170 0.294 0.135 1.352 1.335 5.198 - 10.45 51.08 1981 0.109 0.140 0.035 0.016 0.162 1.144 1.607 - 10.45 51.08 1982 0.951 1.221 0.306 0.141 1.411 1.604 5.635 - 10.45 51.08 1983 0.900 1.156 0.290 0.133 1.335 1.260 5.074 - 10.45 51.08 1984 0.103 0.132 0.033 0.015 0.153 0.957 1.393 - 10.45 51.08 1985 0.946 1.214 0.305 0.140 1.402 1.460 5.467 - 10.45 51.08 1986 0.541 0.695 0.174 0.080 0.803 1.269 3.563 - 10.45 51.08 1987 0.102 0.130 0.033 0.015 0.151 0.915 1.346 - 10.45 51.08 1988 0.924 1.186 0.298 0.137 1.370 1.452 5.367 - 10.45 51.08 1989 0.811 1.041 0.261 0.120 1.203 1.381 4.817 - 10.45 51.08 1990 0.775 0.995 0.250 0.115 1.149 1.251 4.535 - 10.45 51.08 1991 0.865 1.111 0.279 0.128 1.283 1.327 4.994 - 10.45 51.08 1992 0.694 0.891 0.223 0.103 1.029 1.301 4.242 - 10.45 51.08 1993 0.364 0.467 0.117 0.054 0.539 1.042 2.583 - 10.45 51.08 1994 0.085 0.109 0.027 0.013 0.126 1.315 1.674 - 10.45 51.08 1995 0.172 0.220 0.055 0.025 0.255 0.178 0.906 - 10.45 51.08 1996 0.167 0.214 0.054 0.025 0.247 0.588 1.294 - 10.45 51.08 1997 1.331 1.709 0.429 0.197 1.974 1.165 6.806 - 10.45 51.08 1998 1.247 1.601 0.401 0.185 1.849 0.905 6.188 - 10.45 51.08 1999 0.674 0.866 0.217 0.100 1.000 1.080 3.938 - 10.45 51.08 2000 1.052 1.351 0.339 0.156 1.561 1.238 5.697 - 10.45 51.08 2001 0.619 0.795 0.199 0.092 0.918 1.336 3.959 - 10.45 51.08 2002 0.136 0.174 0.044 0.020 0.201 0.996 1.571 - 10.45 51.08 2003 1.108 1.422 0.357 0.164 1.643 1.543 6.237 - 10.45 51.08 2004 1.094 1.405 0.352 0.162 1.623 1.390 6.025 - 10.45 51.08 2005 1.066 1.369 0.343 0.158 1.581 1.581 6.099 - 10.45 51.08 2006 0.981 1.259 0.316 0.145 1.454 1.649 5.804 - 10.45 51.08 2007 0.551 0.708 0.178 0.082 0.818 1.510 3.846 - 10.45 51.08 2008 1.016 1.304 0.327 0.151 1.506 1.811 6.114 - 10.45 51.08 2009 0.888 1.141 0.286 0.132 1.317 1.659 5.423 - 10.45 51.08 2010 0.590 0.758 0.190 0.088 0.875 1.423 3.923 - 10.45 51.08 2011 1.112 1.427 0.358 0.165 1.649 1.922 6.633 - 10.45 51.08 2012 0.939 1.205 0.302 0.139 1.392 1.748 5.725 diff --git a/rLPJGUESS/inst/extdata/outputsForTests/run_nyear_spinup/outDirectory/nlitter.out b/rLPJGUESS/inst/extdata/outputsForTests/run_nyear_spinup/outDirectory/nlitter.out deleted file mode 100644 index 0b153fa..0000000 --- a/rLPJGUESS/inst/extdata/outputsForTests/run_nyear_spinup/outDirectory/nlitter.out +++ /dev/null @@ -1,63 +0,0 @@ - Lon Lat Year Abi_alb BES Bet_pen Bet_pub Car_bet Cor_ave Fag_syl Fra_exc Jun_oxy MRS Pic_abi Pic_sit Pin_syl Pin_hal Pop_tre Que_coc Que_ile Que_pub Que_rob Til_cor Ulm_gla C3_gr C4_gr Total - 10.45 51.08 1951 0.00 0.70 3.12 2.89 2.63 1.53 0.57 1.46 0.00 0.00 0.30 0.82 0.76 0.00 3.28 0.00 0.00 1.81 2.81 2.25 1.46 69.90 0.00 96.31 - 10.45 51.08 1952 0.00 0.90 5.45 5.29 4.43 2.23 0.96 2.45 0.00 0.00 0.46 1.25 1.13 0.00 5.61 0.00 0.00 3.05 4.74 3.75 2.45 47.29 0.00 91.45 - 10.45 51.08 1953 0.00 1.14 7.52 7.47 6.60 3.49 1.45 3.65 0.00 0.00 0.58 1.53 1.41 0.00 7.77 0.00 0.00 4.56 7.07 5.55 3.65 37.66 0.00 101.11 - 10.45 51.08 1954 0.00 1.23 11.27 11.26 9.24 4.47 2.07 5.49 0.00 0.00 0.68 1.76 1.64 0.00 10.70 0.00 0.00 6.39 9.92 7.44 5.12 0.00 0.00 88.68 - 10.45 51.08 1955 0.00 1.34 12.24 14.21 11.66 5.26 2.63 6.00 0.00 0.00 0.75 1.86 1.78 0.00 13.75 0.00 0.00 8.52 12.52 9.86 6.48 0.00 0.00 108.86 - 10.45 51.08 1956 0.00 1.16 14.24 17.40 13.12 5.62 3.00 7.13 0.00 0.00 0.74 1.74 1.76 0.00 14.30 0.00 0.00 9.09 14.12 10.11 7.31 0.00 0.00 120.84 - 10.45 51.08 1957 0.00 1.22 14.87 19.02 14.80 5.75 3.30 8.15 0.00 0.00 0.82 1.62 1.72 0.00 16.58 0.00 0.00 9.18 15.35 11.75 7.96 0.00 0.00 132.09 - 10.45 51.08 1958 0.00 1.40 16.99 20.26 15.40 5.81 3.62 7.59 0.00 0.00 0.64 1.49 1.71 0.00 15.21 0.00 0.00 10.70 17.26 11.30 9.27 0.00 0.00 138.65 - 10.45 51.08 1959 0.00 1.17 16.57 23.95 15.39 5.91 3.89 8.50 0.00 0.00 0.58 1.62 1.47 0.00 16.33 0.00 0.00 9.81 16.96 12.82 8.50 0.00 0.00 143.49 - 10.45 51.08 1960 0.00 0.76 16.63 25.96 16.38 5.50 4.14 8.71 0.00 0.00 0.54 0.90 1.36 0.00 17.67 0.00 0.00 10.75 18.30 11.76 9.34 0.00 0.00 148.68 - 10.45 51.08 1961 0.00 0.45 14.79 24.39 16.79 4.42 4.23 9.50 0.00 0.00 0.44 0.69 1.14 0.00 14.96 0.00 0.00 11.34 18.03 11.50 9.19 0.00 0.00 141.85 - 10.45 51.08 1962 0.00 0.40 14.72 24.28 16.59 4.36 4.39 8.25 0.00 0.00 0.45 0.48 1.09 0.00 19.93 0.00 0.00 10.16 19.34 11.74 9.48 0.00 0.00 145.63 - 10.45 51.08 1963 0.00 0.56 16.34 26.45 15.81 5.04 4.54 9.55 0.00 0.00 0.27 0.17 0.91 0.00 11.52 0.00 0.00 10.62 18.21 11.52 9.65 0.00 0.00 141.15 - 10.45 51.08 1964 0.00 0.03 13.73 29.07 16.50 3.12 4.59 8.13 0.00 0.00 0.21 0.18 0.79 0.00 11.77 0.00 0.00 10.52 19.30 12.64 9.56 0.00 0.00 140.13 - 10.45 51.08 1965 0.00 0.00 11.04 27.18 16.20 2.74 4.69 8.23 0.00 0.00 0.12 0.09 0.61 0.00 16.12 0.00 0.00 10.66 18.79 11.86 10.59 0.00 0.00 138.91 - 10.45 51.08 1966 0.00 0.00 12.28 29.79 14.92 2.41 4.82 8.32 0.00 0.00 0.09 0.06 0.52 0.00 10.25 0.00 0.00 10.77 18.49 9.65 9.00 0.00 0.00 131.36 - 10.45 51.08 1967 0.00 0.00 12.45 32.09 15.58 1.87 5.07 8.71 0.00 0.00 0.40 0.04 0.44 0.00 11.83 0.00 0.00 12.27 17.57 10.06 9.79 0.00 0.00 138.16 - 10.45 51.08 1968 0.00 0.00 9.02 35.53 15.92 2.01 5.39 8.91 0.00 0.00 0.00 0.06 0.37 0.00 9.16 0.00 0.00 10.74 18.61 10.98 9.96 0.00 0.00 136.64 - 10.45 51.08 1969 0.00 0.00 7.48 41.98 16.17 1.72 5.64 9.11 0.00 0.00 0.00 0.04 0.29 0.00 10.32 0.00 0.00 11.32 22.20 9.60 10.18 0.00 0.00 146.05 - 10.45 51.08 1970 0.00 0.00 5.97 39.10 16.14 1.46 5.80 9.15 0.00 0.00 0.00 0.03 1.29 0.00 7.32 0.00 0.00 11.32 17.64 10.11 10.23 0.00 0.00 135.58 - 10.45 51.08 1971 0.00 0.00 5.73 46.64 15.99 2.20 5.92 9.13 0.00 0.00 0.00 0.00 0.00 0.00 8.45 0.00 0.00 12.52 17.91 9.39 10.21 0.00 0.00 144.11 - 10.45 51.08 1972 0.00 0.00 6.36 41.82 16.72 0.89 6.04 8.98 0.00 0.00 0.00 0.00 0.00 0.00 4.60 0.00 0.00 11.80 17.10 8.56 10.03 0.00 0.00 132.91 - 10.45 51.08 1973 0.00 0.00 6.72 44.47 15.69 0.42 6.00 8.70 0.00 0.00 0.00 0.00 0.00 0.00 4.23 0.00 0.00 9.73 16.14 6.84 9.72 0.00 0.00 128.67 - 10.45 51.08 1974 0.00 0.00 3.82 45.44 13.63 0.86 6.01 8.48 0.00 0.00 0.00 0.00 0.00 0.00 7.43 0.00 0.00 9.47 13.96 8.08 9.47 0.00 0.00 126.66 - 10.45 51.08 1975 0.00 0.00 5.70 47.03 15.92 2.86 6.06 9.75 0.00 0.00 0.00 0.00 0.00 0.00 3.73 0.00 0.00 9.43 15.24 6.41 10.74 0.00 0.00 132.86 - 10.45 51.08 1976 0.00 0.00 5.07 49.70 13.70 0.00 6.15 9.27 0.00 0.00 0.00 0.00 0.00 0.00 4.27 0.00 0.00 9.40 13.36 5.01 8.90 0.00 0.00 124.83 - 10.45 51.08 1977 0.00 0.00 5.32 57.12 11.28 0.00 6.08 7.02 0.00 0.00 0.00 0.00 0.00 0.00 1.81 0.00 0.00 10.25 14.01 5.37 11.13 0.00 0.00 129.39 - 10.45 51.08 1978 0.00 0.00 1.45 47.55 10.68 0.00 5.92 6.68 0.00 0.00 0.00 0.00 0.00 0.00 2.55 0.00 0.00 9.41 11.59 4.78 7.13 0.00 0.00 107.74 - 10.45 51.08 1979 0.00 0.00 3.50 51.78 10.76 0.00 6.15 6.78 0.00 0.00 0.00 0.00 0.00 0.00 1.43 0.00 0.00 7.69 13.21 4.49 7.23 0.00 0.00 113.02 - 10.45 51.08 1980 0.00 0.00 0.97 52.76 10.65 0.00 6.26 6.75 0.00 0.00 0.00 0.00 0.00 0.00 2.27 0.00 0.00 9.11 14.20 5.04 8.65 0.00 0.00 116.67 - 10.45 51.08 1981 0.00 0.00 1.98 56.96 11.87 0.00 6.40 6.70 0.00 0.00 0.00 0.00 0.00 0.00 3.89 0.00 0.00 7.14 11.77 2.72 6.70 0.00 0.00 116.12 - 10.45 51.08 1982 0.00 0.00 1.78 68.04 10.06 0.00 6.46 6.69 0.00 0.00 0.00 0.00 0.00 0.00 2.52 0.00 0.00 8.66 9.81 3.52 6.69 0.00 0.00 124.23 - 10.45 51.08 1983 0.00 0.00 0.48 58.50 10.81 0.00 6.48 6.32 0.00 0.00 0.00 0.58 0.00 0.00 0.36 0.00 0.00 6.32 9.27 2.21 6.32 0.00 0.00 107.66 - 10.45 51.08 1984 0.00 0.00 0.45 60.57 10.10 0.00 6.47 6.12 0.00 0.00 0.00 0.00 0.00 0.00 1.26 0.00 0.00 7.66 10.54 2.94 6.12 0.00 0.00 112.23 - 10.45 51.08 1985 0.00 0.00 0.41 69.84 7.90 0.00 6.32 8.91 0.00 0.00 0.00 0.00 0.00 0.00 0.20 0.00 0.00 6.98 8.14 1.72 5.81 0.00 0.00 116.22 - 10.45 51.08 1986 0.00 0.00 0.40 69.76 8.06 0.00 6.69 5.16 0.00 0.00 0.00 0.00 0.00 0.00 0.19 0.00 0.00 5.16 9.94 1.71 5.96 0.00 0.00 113.03 - 10.45 51.08 1987 0.00 0.00 0.38 71.27 7.89 0.00 6.74 5.07 0.00 0.00 0.00 0.00 0.00 0.00 0.18 0.00 0.00 5.07 7.80 1.63 5.85 0.00 0.00 111.89 - 10.45 51.08 1988 0.00 0.00 0.36 60.02 9.19 0.00 6.81 5.00 0.00 0.00 0.00 0.00 0.00 0.00 0.17 0.00 0.00 5.01 7.70 1.56 5.77 0.00 0.00 101.59 - 10.45 51.08 1989 0.00 0.00 1.44 64.34 7.33 0.00 7.01 6.63 0.00 0.00 0.00 0.00 0.00 0.00 1.10 0.00 0.00 4.98 7.66 1.51 5.74 0.00 0.00 107.72 - 10.45 51.08 1990 0.00 0.00 0.21 65.19 7.07 0.00 7.16 4.46 0.00 0.00 0.00 0.00 0.00 0.00 0.07 0.00 0.00 4.83 7.44 2.33 5.57 0.00 0.00 104.33 - 10.45 51.08 1991 0.00 0.00 0.20 66.53 9.84 0.00 7.20 4.35 0.00 0.00 0.00 0.00 0.00 0.00 0.07 0.00 0.00 4.72 8.96 1.25 5.44 0.00 0.00 108.56 - 10.45 51.08 1992 0.00 0.00 0.18 68.08 7.37 0.00 7.10 4.11 0.00 0.00 0.00 0.00 0.00 0.00 0.06 0.00 0.00 6.15 6.51 1.14 5.14 0.00 0.00 105.86 - 10.45 51.08 1993 0.00 0.00 0.16 66.89 5.17 0.00 6.89 3.83 0.00 0.00 0.00 0.00 0.00 0.00 0.06 0.00 0.00 3.83 7.77 2.85 4.79 0.00 0.00 102.23 - 10.45 51.08 1994 0.00 0.00 2.36 418.04 35.26 0.00 28.81 24.35 0.00 0.00 0.00 0.00 0.00 0.00 0.99 0.00 0.00 24.46 36.98 9.06 30.44 0.00 0.00 610.75 - 10.45 51.08 1995 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 - 10.45 51.08 1996 0.00 0.11 0.70 0.57 0.47 0.26 0.14 0.63 0.00 0.00 0.06 0.21 0.26 0.00 0.47 0.00 0.00 0.35 0.46 0.48 0.39 42.70 0.00 48.28 - 10.45 51.08 1997 0.00 0.30 1.59 1.42 1.12 0.64 0.35 1.52 0.00 0.00 0.11 0.39 0.48 0.00 1.12 0.00 0.00 0.84 1.04 1.15 0.95 74.44 0.00 87.46 - 10.45 51.08 1998 0.00 0.47 3.10 3.04 2.16 1.17 0.73 2.96 0.00 0.00 0.19 0.67 0.81 0.00 2.14 0.00 0.00 1.63 2.07 2.23 1.84 96.68 0.00 121.88 - 10.45 51.08 1999 0.00 0.67 5.26 4.57 3.71 1.92 1.28 5.09 0.00 0.00 0.28 0.98 1.18 0.00 3.61 0.00 0.00 2.80 3.52 3.77 3.15 31.75 0.00 73.53 - 10.45 51.08 2000 0.00 0.83 8.06 7.85 5.72 3.03 2.02 7.86 0.00 0.00 0.38 1.30 1.55 0.00 5.50 0.00 0.00 4.32 5.44 5.75 4.86 41.63 0.00 106.09 - 10.45 51.08 2001 0.00 1.01 11.74 11.45 8.50 4.03 3.00 11.69 0.00 0.00 0.46 1.53 1.82 0.00 7.96 0.00 0.00 6.43 8.09 8.44 7.23 0.00 0.00 93.39 - 10.45 51.08 2002 0.00 0.97 14.61 14.67 10.64 4.75 3.77 14.64 0.00 0.00 0.48 1.53 1.90 0.00 9.91 0.00 0.00 8.06 10.14 10.56 9.07 0.00 0.00 115.70 - 10.45 51.08 2003 0.00 0.80 16.94 18.20 12.13 5.09 4.32 16.72 0.00 0.00 0.47 1.41 1.85 0.00 11.63 0.00 0.00 9.22 11.59 11.96 10.37 0.00 0.00 132.71 - 10.45 51.08 2004 0.00 1.03 17.00 18.84 13.22 5.16 4.74 18.31 0.00 0.00 0.46 1.42 1.80 0.00 11.27 0.00 0.00 10.08 12.65 12.84 11.33 0.00 0.00 140.13 - 10.45 51.08 2005 0.00 1.02 19.41 21.42 14.04 5.01 5.07 19.35 0.00 0.00 0.42 1.13 1.71 0.00 13.14 0.00 0.00 10.73 13.46 13.33 12.06 0.00 0.00 151.29 - 10.45 51.08 2006 0.00 0.58 18.44 23.01 15.34 5.36 5.31 20.90 0.00 0.00 0.37 0.86 1.47 0.00 10.82 0.00 0.00 11.18 14.01 13.67 12.57 0.00 0.00 153.90 - 10.45 51.08 2007 0.00 0.62 17.53 24.81 14.37 4.31 5.51 20.11 0.00 0.00 0.29 0.57 1.19 0.00 11.19 0.00 0.00 11.57 15.28 13.83 13.01 0.00 0.00 154.18 - 10.45 51.08 2008 0.00 0.12 19.08 26.80 15.25 3.82 5.86 22.46 0.00 0.00 0.26 0.43 1.06 0.00 12.10 0.00 0.00 12.04 14.35 14.83 14.41 0.00 0.00 162.87 - 10.45 51.08 2009 0.00 0.25 14.95 30.70 15.29 2.94 5.87 20.97 0.00 0.00 0.20 0.22 1.07 0.00 11.40 0.00 0.00 12.43 15.05 14.18 13.20 0.00 0.00 158.71 - 10.45 51.08 2010 0.00 0.00 16.15 28.93 14.93 3.46 5.92 21.78 0.00 0.00 0.12 0.08 0.68 0.00 10.50 0.00 0.00 12.21 14.75 12.52 14.16 0.00 0.00 156.19 - 10.45 51.08 2011 0.00 0.00 13.47 31.38 14.94 2.30 5.97 21.43 0.00 0.00 0.31 0.13 0.49 0.00 10.66 0.00 0.00 12.28 14.84 13.82 12.79 0.00 0.00 154.81 - 10.45 51.08 2012 0.00 0.00 17.83 36.07 15.26 2.97 6.18 20.33 0.00 0.00 0.00 0.16 0.33 0.00 10.71 0.00 0.00 12.53 15.27 13.02 13.16 0.00 0.00 163.82 diff --git a/rLPJGUESS/inst/extdata/outputsForTests/run_nyear_spinup/outDirectory/nmass.out b/rLPJGUESS/inst/extdata/outputsForTests/run_nyear_spinup/outDirectory/nmass.out deleted file mode 100644 index ceca9d2..0000000 --- a/rLPJGUESS/inst/extdata/outputsForTests/run_nyear_spinup/outDirectory/nmass.out +++ /dev/null @@ -1,63 +0,0 @@ - Lon Lat Year Abi_alb BES Bet_pen Bet_pub Car_bet Cor_ave Fag_syl Fra_exc Jun_oxy MRS Pic_abi Pic_sit Pin_syl Pin_hal Pop_tre Que_coc Que_ile Que_pub Que_rob Til_cor Ulm_gla C3_gr C4_gr Total - 10.45 51.08 1951 0.00 2.18 6.77 6.49 5.65 3.49 1.22 3.13 0.00 0.00 0.71 2.03 1.66 0.00 7.02 0.00 0.00 3.89 6.03 4.80 3.13 113.06 0.00 171.27 - 10.45 51.08 1952 0.00 3.05 12.39 12.45 10.37 5.83 2.25 5.75 0.00 0.00 1.12 3.16 2.56 0.00 12.78 0.00 0.00 7.16 11.10 8.76 5.75 84.95 0.00 189.43 - 10.45 51.08 1953 0.00 3.59 18.49 19.25 15.99 8.56 3.50 8.87 0.00 0.00 1.39 3.84 3.22 0.00 18.87 0.00 0.00 11.05 17.13 13.10 8.87 37.66 0.00 193.38 - 10.45 51.08 1954 0.00 3.95 26.31 28.49 22.86 11.28 5.05 12.70 0.00 0.00 1.68 4.51 3.85 0.00 26.65 0.00 0.00 15.82 24.52 18.44 12.70 0.00 0.00 218.83 - 10.45 51.08 1955 0.00 4.08 30.77 36.13 28.27 13.12 6.29 14.99 0.00 0.00 1.84 4.78 4.21 0.00 32.62 0.00 0.00 19.60 30.37 22.81 15.74 0.00 0.00 265.61 - 10.45 51.08 1956 0.00 3.84 34.87 43.35 32.07 14.12 7.21 17.24 0.00 0.00 1.83 4.52 4.21 0.00 35.76 0.00 0.00 21.45 34.55 24.94 17.93 0.00 0.00 297.88 - 10.45 51.08 1957 0.00 3.71 37.89 49.19 35.60 14.77 8.09 19.00 0.00 0.00 1.82 4.26 4.19 0.00 39.24 0.00 0.00 23.08 38.41 27.64 19.95 0.00 0.00 326.85 - 10.45 51.08 1958 0.00 3.36 41.30 56.27 38.23 15.20 9.03 19.98 0.00 0.00 1.60 3.96 4.07 0.00 40.53 0.00 0.00 25.44 42.47 29.04 22.09 0.00 0.00 352.59 - 10.45 51.08 1959 0.00 2.55 41.88 63.58 40.25 15.13 9.85 21.81 0.00 0.00 1.50 3.56 3.69 0.00 43.28 0.00 0.00 26.15 44.72 31.13 22.73 0.00 0.00 371.80 - 10.45 51.08 1960 0.00 1.80 41.61 67.20 42.18 14.44 10.45 22.72 0.00 0.00 1.37 2.49 3.52 0.00 44.08 0.00 0.00 27.74 47.24 30.63 24.14 0.00 0.00 381.62 - 10.45 51.08 1961 0.00 1.27 40.14 68.84 43.05 13.28 10.86 23.43 0.00 0.00 1.21 1.97 3.17 0.00 42.37 0.00 0.00 28.39 48.38 31.00 24.71 0.00 0.00 382.08 - 10.45 51.08 1962 0.00 0.95 40.74 74.50 44.22 13.05 11.60 23.53 0.00 0.00 1.10 1.50 2.98 0.00 43.93 0.00 0.00 28.79 51.26 32.18 26.19 0.00 0.00 396.50 - 10.45 51.08 1963 0.00 0.60 39.80 80.36 44.00 12.37 11.96 24.29 0.00 0.00 0.83 1.08 2.74 0.00 36.54 0.00 0.00 29.64 51.03 32.14 26.72 0.00 0.00 394.09 - 10.45 51.08 1964 0.00 0.03 35.73 86.38 44.95 10.04 12.37 23.47 0.00 0.00 0.69 0.98 2.50 0.00 37.53 0.00 0.00 30.33 52.42 32.47 27.35 0.00 0.00 397.25 - 10.45 51.08 1965 0.00 0.00 32.79 89.69 44.59 9.31 12.80 24.06 0.00 0.00 0.55 0.86 2.21 0.00 37.94 0.00 0.00 31.09 52.09 30.63 28.04 0.00 0.00 396.65 - 10.45 51.08 1966 0.00 0.00 32.39 99.23 44.71 8.62 13.45 24.93 0.00 0.00 0.47 0.81 2.07 0.00 32.07 0.00 0.00 32.21 52.58 29.15 27.63 0.00 0.00 400.32 - 10.45 51.08 1967 0.00 0.00 30.12 111.61 47.42 8.09 14.54 26.48 0.00 0.00 0.40 0.76 1.94 0.00 32.20 0.00 0.00 34.21 54.41 30.59 29.65 0.00 0.00 422.41 - 10.45 51.08 1968 0.00 0.00 25.67 125.22 49.35 7.87 15.58 27.69 0.00 0.00 0.00 0.73 1.82 0.00 29.32 0.00 0.00 34.21 57.27 31.40 30.94 0.00 0.00 437.06 - 10.45 51.08 1969 0.00 0.00 23.57 137.83 50.75 7.24 16.37 28.61 0.00 0.00 0.00 0.68 1.58 0.00 28.28 0.00 0.00 35.62 58.92 30.40 31.98 0.00 0.00 451.84 - 10.45 51.08 1970 0.00 0.00 22.38 144.80 51.77 6.62 17.04 29.32 0.00 0.00 0.00 0.64 1.29 0.00 24.66 0.00 0.00 36.43 55.20 30.34 32.77 0.00 0.00 453.25 - 10.45 51.08 1971 0.00 0.00 22.43 157.41 52.61 6.06 17.69 29.94 0.00 0.00 0.00 0.60 0.00 0.00 23.36 0.00 0.00 37.18 55.38 29.00 33.46 0.00 0.00 465.10 - 10.45 51.08 1972 0.00 0.00 22.08 159.34 52.32 4.41 17.97 29.94 0.00 0.00 0.00 0.60 0.00 0.00 19.51 0.00 0.00 35.41 53.60 27.33 33.46 0.00 0.00 455.97 - 10.45 51.08 1973 0.00 0.00 20.67 172.20 51.00 3.92 18.39 30.27 0.00 0.00 0.00 0.60 0.00 0.00 19.28 0.00 0.00 34.02 52.38 25.76 33.83 0.00 0.00 462.33 - 10.45 51.08 1974 0.00 0.00 17.75 179.59 49.12 3.70 18.55 30.20 0.00 0.00 0.00 0.59 0.00 0.00 18.92 0.00 0.00 33.94 50.46 25.26 33.76 0.00 0.00 461.85 - 10.45 51.08 1975 0.00 0.00 17.85 194.62 50.04 2.86 19.21 30.89 0.00 0.00 0.00 0.59 0.00 0.00 14.47 0.00 0.00 34.70 51.59 22.97 34.52 0.00 0.00 474.31 - 10.45 51.08 1976 0.00 0.00 15.29 208.57 47.26 0.00 19.77 29.56 0.00 0.00 0.00 0.59 0.00 0.00 13.27 0.00 0.00 35.28 50.57 21.62 33.25 0.00 0.00 475.03 - 10.45 51.08 1977 0.00 0.00 12.47 214.16 44.89 0.00 19.78 27.35 0.00 0.00 0.00 0.59 0.00 0.00 10.80 0.00 0.00 34.82 49.92 21.07 32.82 0.00 0.00 468.68 - 10.45 51.08 1978 0.00 0.00 8.65 215.88 44.87 0.00 20.03 27.43 0.00 0.00 0.00 0.59 0.00 0.00 10.67 0.00 0.00 33.08 48.20 19.67 29.25 0.00 0.00 458.34 - 10.45 51.08 1979 0.00 0.00 8.71 233.92 45.77 0.00 20.84 28.11 0.00 0.00 0.00 0.59 0.00 0.00 9.63 0.00 0.00 32.02 49.39 18.63 29.99 0.00 0.00 477.59 - 10.45 51.08 1980 0.00 0.00 6.22 247.08 46.30 0.00 21.41 28.52 0.00 0.00 0.00 0.59 0.00 0.00 9.60 0.00 0.00 32.49 48.18 17.49 30.42 0.00 0.00 488.31 - 10.45 51.08 1981 0.00 0.00 6.21 266.12 46.71 0.00 22.03 28.86 0.00 0.00 0.00 0.59 0.00 0.00 8.48 0.00 0.00 30.94 44.84 15.19 28.86 0.00 0.00 498.84 - 10.45 51.08 1982 0.00 0.00 4.98 285.58 45.59 0.00 22.75 29.36 0.00 0.00 0.00 0.59 0.00 0.00 5.30 0.00 0.00 31.47 43.63 15.18 29.36 0.00 0.00 513.78 - 10.45 51.08 1983 0.00 0.00 3.68 282.78 45.01 0.00 22.85 29.03 0.00 0.00 0.00 0.58 0.00 0.00 3.13 0.00 0.00 29.18 43.14 13.87 29.03 0.00 0.00 502.28 - 10.45 51.08 1984 0.00 0.00 3.66 296.88 43.28 0.00 23.29 29.14 0.00 0.00 0.00 0.00 0.00 0.00 3.11 0.00 0.00 29.28 43.29 13.70 29.14 0.00 0.00 514.75 - 10.45 51.08 1985 0.00 0.00 3.62 308.06 41.31 0.00 23.46 29.05 0.00 0.00 0.00 0.00 0.00 0.00 2.05 0.00 0.00 27.25 41.21 12.47 29.05 0.00 0.00 517.55 - 10.45 51.08 1986 0.00 0.00 3.64 315.21 42.03 0.00 24.49 25.70 0.00 0.00 0.00 0.00 0.00 0.00 2.05 0.00 0.00 25.82 42.05 12.52 29.65 0.00 0.00 523.17 - 10.45 51.08 1987 0.00 0.00 3.63 320.91 42.35 0.00 25.13 25.95 0.00 0.00 0.00 0.00 0.00 0.00 2.05 0.00 0.00 26.07 40.43 12.49 29.94 0.00 0.00 528.95 - 10.45 51.08 1988 0.00 0.00 3.63 326.70 42.62 0.00 25.88 26.20 0.00 0.00 0.00 0.00 0.00 0.00 2.04 0.00 0.00 26.32 40.82 12.45 30.23 0.00 0.00 536.89 - 10.45 51.08 1989 0.00 0.00 3.63 344.84 41.11 0.00 26.78 26.45 0.00 0.00 0.00 0.00 0.00 0.00 2.03 0.00 0.00 26.57 41.20 12.44 30.52 0.00 0.00 555.56 - 10.45 51.08 1990 0.00 0.00 2.40 357.56 40.96 0.00 27.26 24.39 0.00 0.00 0.00 0.00 0.00 0.00 1.01 0.00 0.00 26.54 41.16 12.34 30.48 0.00 0.00 564.10 - 10.45 51.08 1991 0.00 0.00 2.40 376.33 41.10 0.00 27.96 24.54 0.00 0.00 0.00 0.00 0.00 0.00 1.01 0.00 0.00 26.71 41.41 11.30 30.67 0.00 0.00 583.43 - 10.45 51.08 1992 0.00 0.00 2.38 388.13 37.12 0.00 27.91 24.29 0.00 0.00 0.00 0.00 0.00 0.00 1.00 0.00 0.00 26.44 38.95 11.18 30.36 0.00 0.00 587.76 - 10.45 51.08 1993 0.00 0.00 2.35 398.15 34.92 0.00 27.97 24.04 0.00 0.00 0.00 0.00 0.00 0.00 0.99 0.00 0.00 24.16 38.55 11.04 30.05 0.00 0.00 592.22 - 10.45 51.08 1994 0.00 0.00 2.36 418.04 35.26 0.00 28.81 24.35 0.00 0.00 0.00 0.00 0.00 0.00 0.99 0.00 0.00 24.46 36.98 9.06 30.44 0.00 0.00 610.75 - 10.45 51.08 1995 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 - 10.45 51.08 1996 0.00 0.49 1.20 1.00 0.81 0.51 0.25 1.10 0.00 0.00 0.13 0.51 0.54 0.00 0.81 0.00 0.00 0.61 0.79 0.84 0.69 64.32 0.00 74.61 - 10.45 51.08 1997 0.00 0.96 3.07 2.77 2.14 1.36 0.67 2.91 0.00 0.00 0.25 0.95 1.01 0.00 2.13 0.00 0.00 1.61 2.01 2.20 1.81 118.23 0.00 144.09 - 10.45 51.08 1998 0.00 1.56 6.61 6.33 4.63 2.76 1.54 6.33 0.00 0.00 0.44 1.65 1.76 0.00 4.55 0.00 0.00 3.49 4.40 4.72 3.93 148.67 0.00 203.38 - 10.45 51.08 1999 0.00 2.18 12.36 11.65 8.72 4.90 2.96 11.95 0.00 0.00 0.67 2.46 2.65 0.00 8.42 0.00 0.00 6.59 8.28 8.71 7.41 67.21 0.00 167.10 - 10.45 51.08 2000 0.00 2.73 20.48 20.14 14.54 7.67 4.99 19.96 0.00 0.00 0.93 3.34 3.58 0.00 13.90 0.00 0.00 11.00 13.83 14.45 12.37 41.63 0.00 205.56 - 10.45 51.08 2001 0.00 3.03 29.13 29.14 20.87 10.14 7.19 28.65 0.00 0.00 1.12 3.93 4.28 0.00 19.72 0.00 0.00 15.80 19.85 20.62 17.77 0.00 0.00 231.24 - 10.45 51.08 2002 0.00 2.90 36.28 37.86 26.16 11.97 9.04 36.02 0.00 0.00 1.18 3.93 4.49 0.00 24.55 0.00 0.00 19.87 24.96 25.77 22.36 0.00 0.00 287.35 - 10.45 51.08 2003 0.00 2.69 41.19 45.79 30.06 12.90 10.43 41.45 0.00 0.00 1.15 3.67 4.45 0.00 27.79 0.00 0.00 22.90 28.74 29.39 25.75 0.00 0.00 328.35 - 10.45 51.08 2004 0.00 2.61 43.94 51.17 33.17 13.21 11.56 45.83 0.00 0.00 1.13 3.49 4.37 0.00 29.08 0.00 0.00 25.34 31.79 31.73 28.50 0.00 0.00 356.91 - 10.45 51.08 2005 0.00 2.07 46.95 58.31 35.76 13.22 12.55 49.33 0.00 0.00 1.05 2.86 4.10 0.00 30.78 0.00 0.00 27.36 34.30 33.55 30.77 0.00 0.00 382.96 - 10.45 51.08 2006 0.00 1.34 46.73 64.94 37.98 12.89 13.40 52.45 0.00 0.00 0.96 2.27 3.66 0.00 29.67 0.00 0.00 29.11 36.48 34.99 32.75 0.00 0.00 399.63 - 10.45 51.08 2007 0.00 0.92 46.52 71.69 38.70 11.46 14.16 53.99 0.00 0.00 0.79 1.66 3.27 0.00 30.91 0.00 0.00 30.69 38.43 36.34 34.52 0.00 0.00 414.07 - 10.45 51.08 2008 0.00 0.36 47.59 80.70 41.15 10.61 15.05 58.35 0.00 0.00 0.74 1.33 3.06 0.00 32.29 0.00 0.00 33.05 40.00 37.97 37.18 0.00 0.00 439.44 - 10.45 51.08 2009 0.00 0.25 44.38 87.89 41.91 9.68 15.41 58.24 0.00 0.00 0.58 0.93 2.80 0.00 31.23 0.00 0.00 34.10 41.46 36.89 36.93 0.00 0.00 442.68 - 10.45 51.08 2010 0.00 0.00 44.63 91.50 42.26 9.15 15.75 59.20 0.00 0.00 0.43 0.76 2.30 0.00 29.96 0.00 0.00 34.51 41.93 35.63 37.64 0.00 0.00 445.63 - 10.45 51.08 2011 0.00 0.00 42.94 101.11 43.39 7.61 16.33 59.56 0.00 0.00 0.31 0.71 1.98 0.00 29.14 0.00 0.00 35.59 43.24 36.02 37.31 0.00 0.00 455.23 - 10.45 51.08 2012 0.00 0.00 43.89 111.63 44.80 6.93 17.14 60.24 0.00 0.00 0.00 0.61 1.67 0.00 27.29 0.00 0.00 36.92 44.85 34.12 38.70 0.00 0.00 468.80 diff --git a/rLPJGUESS/inst/extdata/outputsForTests/run_nyear_spinup/outDirectory/npool.out b/rLPJGUESS/inst/extdata/outputsForTests/run_nyear_spinup/outDirectory/npool.out deleted file mode 100644 index 9bd456d..0000000 --- a/rLPJGUESS/inst/extdata/outputsForTests/run_nyear_spinup/outDirectory/npool.out +++ /dev/null @@ -1,63 +0,0 @@ - Lon Lat Year VegN LitterN SoilN Total - 10.45 51.08 1951 0.0171 0.0941 1.2265 1.3377 - 10.45 51.08 1952 0.0189 0.0903 1.2301 1.3394 - 10.45 51.08 1953 0.0193 0.0856 1.2341 1.3390 - 10.45 51.08 1954 0.0219 0.0829 1.2347 1.3395 - 10.45 51.08 1955 0.0266 0.0812 1.2363 1.3441 - 10.45 51.08 1956 0.0298 0.0805 1.2392 1.3495 - 10.45 51.08 1957 0.0327 0.0774 1.2410 1.3512 - 10.45 51.08 1958 0.0353 0.0758 1.2430 1.3541 - 10.45 51.08 1959 0.0372 0.0725 1.2446 1.3542 - 10.45 51.08 1960 0.0382 0.0711 1.2472 1.3564 - 10.45 51.08 1961 0.0382 0.0688 1.2498 1.3569 - 10.45 51.08 1962 0.0396 0.0672 1.2502 1.3571 - 10.45 51.08 1963 0.0394 0.0659 1.2519 1.3573 - 10.45 51.08 1964 0.0397 0.0636 1.2526 1.3559 - 10.45 51.08 1965 0.0397 0.0632 1.2539 1.3568 - 10.45 51.08 1966 0.0400 0.0624 1.2552 1.3577 - 10.45 51.08 1967 0.0422 0.0600 1.2547 1.3569 - 10.45 51.08 1968 0.0437 0.0586 1.2544 1.3567 - 10.45 51.08 1969 0.0452 0.0580 1.2552 1.3584 - 10.45 51.08 1970 0.0453 0.0578 1.2557 1.3589 - 10.45 51.08 1971 0.0465 0.0553 1.2554 1.3573 - 10.45 51.08 1972 0.0456 0.0567 1.2576 1.3600 - 10.45 51.08 1973 0.0462 0.0542 1.2567 1.3571 - 10.45 51.08 1974 0.0462 0.0535 1.2574 1.3571 - 10.45 51.08 1975 0.0474 0.0511 1.2561 1.3546 - 10.45 51.08 1976 0.0475 0.0499 1.2554 1.3528 - 10.45 51.08 1977 0.0469 0.0507 1.2571 1.3547 - 10.45 51.08 1978 0.0458 0.0500 1.2571 1.3528 - 10.45 51.08 1979 0.0478 0.0482 1.2553 1.3513 - 10.45 51.08 1980 0.0488 0.0470 1.2543 1.3501 - 10.45 51.08 1981 0.0499 0.0471 1.2545 1.3515 - 10.45 51.08 1982 0.0514 0.0445 1.2524 1.3483 - 10.45 51.08 1983 0.0502 0.0439 1.2528 1.3469 - 10.45 51.08 1984 0.0515 0.0446 1.2535 1.3496 - 10.45 51.08 1985 0.0518 0.0426 1.2518 1.3462 - 10.45 51.08 1986 0.0523 0.0427 1.2505 1.3456 - 10.45 51.08 1987 0.0529 0.0442 1.2513 1.3484 - 10.45 51.08 1988 0.0537 0.0420 1.2499 1.3457 - 10.45 51.08 1989 0.0556 0.0400 1.2482 1.3437 - 10.45 51.08 1990 0.0564 0.0387 1.2477 1.3427 - 10.45 51.08 1991 0.0583 0.0372 1.2461 1.3416 - 10.45 51.08 1992 0.0588 0.0362 1.2449 1.3399 - 10.45 51.08 1993 0.0592 0.0365 1.2448 1.3405 - 10.45 51.08 1994 0.0611 0.0355 1.2429 1.3395 - 10.45 51.08 1995 0.0000 0.0836 1.2599 1.3436 - 10.45 51.08 1996 0.0075 0.0792 1.2584 1.3451 - 10.45 51.08 1997 0.0144 0.0739 1.2563 1.3447 - 10.45 51.08 1998 0.0203 0.0703 1.2594 1.3500 - 10.45 51.08 1999 0.0167 0.0673 1.2643 1.3483 - 10.45 51.08 2000 0.0206 0.0632 1.2634 1.3471 - 10.45 51.08 2001 0.0231 0.0609 1.2627 1.3467 - 10.45 51.08 2002 0.0287 0.0598 1.2634 1.3519 - 10.45 51.08 2003 0.0328 0.0563 1.2630 1.3522 - 10.45 51.08 2004 0.0357 0.0548 1.2638 1.3543 - 10.45 51.08 2005 0.0383 0.0526 1.2642 1.3551 - 10.45 51.08 2006 0.0400 0.0507 1.2646 1.3553 - 10.45 51.08 2007 0.0414 0.0503 1.2657 1.3574 - 10.45 51.08 2008 0.0439 0.0484 1.2649 1.3573 - 10.45 51.08 2009 0.0443 0.0476 1.2655 1.3573 - 10.45 51.08 2010 0.0446 0.0481 1.2667 1.3594 - 10.45 51.08 2011 0.0455 0.0454 1.2654 1.3564 - 10.45 51.08 2012 0.0469 0.0439 1.2649 1.3557 diff --git a/rLPJGUESS/inst/extdata/outputsForTests/run_nyear_spinup/outDirectory/nsources.out b/rLPJGUESS/inst/extdata/outputsForTests/run_nyear_spinup/outDirectory/nsources.out deleted file mode 100644 index 575fca1..0000000 --- a/rLPJGUESS/inst/extdata/outputsForTests/run_nyear_spinup/outDirectory/nsources.out +++ /dev/null @@ -1,63 +0,0 @@ - Lon Lat Year dep fix fert input min imm netmin Total - 10.45 51.08 1951 11.23 2.50 0.00 13.73 152.79 99.01 53.78 67.51 - 10.45 51.08 1952 11.23 2.32 0.00 13.55 165.17 73.70 91.47 105.02 - 10.45 51.08 1953 11.23 2.33 0.00 13.56 191.12 96.49 94.63 108.20 - 10.45 51.08 1954 11.23 2.79 0.00 14.02 163.53 45.85 117.68 131.69 - 10.45 51.08 1955 11.23 2.84 0.00 14.07 135.61 47.52 88.09 102.16 - 10.45 51.08 1956 11.23 3.20 0.00 14.44 134.21 47.55 86.66 101.09 - 10.45 51.08 1957 11.23 3.03 0.00 14.26 190.12 60.57 129.55 143.81 - 10.45 51.08 1958 11.23 2.93 0.00 14.16 183.65 56.58 127.08 141.24 - 10.45 51.08 1959 11.23 3.01 0.00 14.24 217.79 68.02 149.77 164.02 - 10.45 51.08 1960 14.10 2.66 0.00 16.76 188.51 61.28 127.24 144.00 - 10.45 51.08 1961 14.10 3.12 0.00 17.22 207.61 69.06 138.55 155.76 - 10.45 51.08 1962 14.10 3.25 0.00 17.35 190.94 45.43 145.51 162.86 - 10.45 51.08 1963 14.10 2.34 0.00 16.44 190.59 53.53 137.06 153.51 - 10.45 51.08 1964 14.10 2.24 0.00 16.34 208.18 54.82 153.36 169.70 - 10.45 51.08 1965 14.10 2.77 0.00 16.87 174.39 48.62 125.77 142.64 - 10.45 51.08 1966 14.10 3.10 0.00 17.20 181.95 49.73 132.23 149.43 - 10.45 51.08 1967 14.10 3.04 0.00 17.14 214.77 57.20 157.57 174.71 - 10.45 51.08 1968 14.10 3.10 0.00 17.20 199.30 48.27 151.02 168.23 - 10.45 51.08 1969 14.10 2.71 0.00 16.81 175.66 43.23 132.43 149.24 - 10.45 51.08 1970 16.97 2.91 0.00 19.88 179.06 40.10 138.96 158.85 - 10.45 51.08 1971 16.97 2.92 0.00 19.89 214.61 55.75 158.86 178.75 - 10.45 51.08 1972 16.97 2.85 0.00 19.82 154.12 46.73 107.40 127.22 - 10.45 51.08 1973 16.97 2.65 0.00 19.62 214.49 50.58 163.90 183.52 - 10.45 51.08 1974 16.97 2.80 0.00 19.77 181.48 53.71 127.76 147.53 - 10.45 51.08 1975 16.97 2.47 0.00 19.44 219.03 58.36 160.67 180.11 - 10.45 51.08 1976 16.97 2.52 0.00 19.49 206.41 58.96 147.45 166.95 - 10.45 51.08 1977 16.97 2.48 0.00 19.45 145.70 47.45 98.25 117.70 - 10.45 51.08 1978 16.97 3.07 0.00 20.04 186.50 51.91 134.59 154.64 - 10.45 51.08 1979 16.97 2.82 0.00 19.79 185.88 45.74 140.14 159.93 - 10.45 51.08 1980 17.99 2.84 0.00 20.84 179.23 47.28 131.95 152.79 - 10.45 51.08 1981 17.99 2.81 0.00 20.80 155.14 41.75 113.39 134.20 - 10.45 51.08 1982 17.99 2.34 0.00 20.33 220.53 61.53 159.00 179.33 - 10.45 51.08 1983 17.99 1.99 0.00 19.99 190.35 66.86 123.49 143.48 - 10.45 51.08 1984 17.99 2.74 0.00 20.74 134.30 40.81 93.49 114.23 - 10.45 51.08 1985 17.99 2.62 0.00 20.61 197.16 51.94 145.22 165.84 - 10.45 51.08 1986 17.99 2.30 0.00 20.29 167.47 41.75 125.72 146.01 - 10.45 51.08 1987 17.99 3.06 0.00 21.06 126.21 36.00 90.21 111.27 - 10.45 51.08 1988 17.99 2.47 0.00 20.46 202.24 58.63 143.61 164.07 - 10.45 51.08 1989 17.99 2.53 0.00 20.53 198.96 62.39 136.57 157.10 - 10.45 51.08 1990 19.66 2.51 0.00 22.17 186.95 63.38 123.57 145.73 - 10.45 51.08 1991 19.66 2.75 0.00 22.41 188.07 56.77 131.30 153.71 - 10.45 51.08 1992 19.66 1.80 0.00 21.46 187.84 59.63 128.21 149.67 - 10.45 51.08 1993 19.66 2.26 0.00 21.92 144.61 41.77 102.84 124.76 - 10.45 51.08 1994 19.66 2.32 0.00 21.98 176.11 45.56 130.56 152.53 - 10.45 51.08 1995 19.66 0.00 0.00 19.66 159.78 201.34 -41.56 -21.90 - 10.45 51.08 1996 19.66 1.74 0.00 21.40 118.31 59.54 58.78 80.17 - 10.45 51.08 1997 19.66 2.69 0.00 22.35 202.45 85.97 116.48 138.83 - 10.45 51.08 1998 19.66 3.05 0.00 22.71 175.23 87.32 87.91 110.62 - 10.45 51.08 1999 19.66 2.47 0.00 22.13 206.87 106.95 99.92 122.05 - 10.45 51.08 2000 21.34 2.33 0.00 23.67 200.09 80.07 120.02 143.69 - 10.45 51.08 2001 21.34 2.69 0.00 24.04 186.19 52.61 133.58 157.62 - 10.45 51.08 2002 21.34 2.92 0.00 24.26 148.74 51.86 96.88 121.14 - 10.45 51.08 2003 21.34 2.37 0.00 23.71 222.59 72.48 150.11 173.82 - 10.45 51.08 2004 21.34 3.02 0.00 24.36 199.51 63.94 135.56 159.92 - 10.45 51.08 2005 21.34 2.61 0.00 23.95 223.32 68.41 154.90 178.85 - 10.45 51.08 2006 21.34 2.40 0.00 23.74 233.97 71.49 162.48 186.22 - 10.45 51.08 2007 21.34 2.43 0.00 23.77 210.76 65.90 144.86 168.63 - 10.45 51.08 2008 21.34 2.96 0.00 24.31 242.14 65.06 177.09 201.39 - 10.45 51.08 2009 21.34 2.35 0.00 23.70 225.02 62.27 162.75 186.45 - 10.45 51.08 2010 20.03 2.68 0.00 22.71 186.56 45.78 140.78 163.49 - 10.45 51.08 2011 20.03 2.88 0.00 22.91 254.94 65.02 189.92 212.83 - 10.45 51.08 2012 20.03 2.72 0.00 22.75 242.44 70.23 172.21 194.96 diff --git a/rLPJGUESS/inst/extdata/outputsForTests/run_nyear_spinup/outDirectory/nuptake.out b/rLPJGUESS/inst/extdata/outputsForTests/run_nyear_spinup/outDirectory/nuptake.out deleted file mode 100644 index 2562fe0..0000000 --- a/rLPJGUESS/inst/extdata/outputsForTests/run_nyear_spinup/outDirectory/nuptake.out +++ /dev/null @@ -1,63 +0,0 @@ - Lon Lat Year Abi_alb BES Bet_pen Bet_pub Car_bet Cor_ave Fag_syl Fra_exc Jun_oxy MRS Pic_abi Pic_sit Pin_syl Pin_hal Pop_tre Que_coc Que_ile Que_pub Que_rob Til_cor Ulm_gla C3_gr C4_gr Total - 10.45 51.08 1951 0.00 1.22 5.27 5.08 4.41 2.57 0.95 2.44 0.00 0.00 0.47 1.31 1.14 0.00 5.45 0.00 0.00 3.04 4.71 3.73 2.44 63.72 0.00 107.95 - 10.45 51.08 1952 0.00 1.57 8.76 8.88 7.38 3.88 1.61 4.09 0.00 0.00 0.72 1.96 1.67 0.00 9.06 0.00 0.00 5.09 7.90 6.23 4.09 41.88 0.00 114.75 - 10.45 51.08 1953 0.00 1.45 11.58 12.11 10.06 4.98 2.22 5.58 0.00 0.00 0.74 1.92 1.79 0.00 11.73 0.00 0.00 6.96 10.79 8.12 5.58 0.00 0.00 95.60 - 10.45 51.08 1954 0.00 1.50 15.37 16.75 13.50 6.22 3.01 7.50 0.00 0.00 0.87 2.22 2.04 0.00 15.58 0.00 0.00 9.35 14.49 10.90 7.50 0.00 0.00 126.80 - 10.45 51.08 1955 0.00 1.36 15.74 18.91 14.66 6.31 3.31 7.78 0.00 0.00 0.85 2.03 2.00 0.00 16.69 0.00 0.00 10.18 15.78 11.83 8.17 0.00 0.00 135.59 - 10.45 51.08 1956 0.00 1.10 16.35 21.45 15.47 6.26 3.55 8.25 0.00 0.00 0.74 1.59 1.78 0.00 16.90 0.00 0.00 10.37 16.71 12.00 8.67 0.00 0.00 141.18 - 10.45 51.08 1957 0.00 1.04 17.30 23.29 16.68 6.28 3.89 8.91 0.00 0.00 0.73 1.49 1.74 0.00 17.81 0.00 0.00 10.69 18.02 12.84 9.36 0.00 0.00 150.06 - 10.45 51.08 1958 0.00 0.87 18.30 26.12 17.45 6.19 4.25 9.15 0.00 0.00 0.60 1.32 1.60 0.00 17.90 0.00 0.00 11.55 19.44 13.17 10.11 0.00 0.00 158.02 - 10.45 51.08 1959 0.00 0.59 17.65 27.70 17.51 5.77 4.47 9.46 0.00 0.00 0.54 1.08 1.34 0.00 18.04 0.00 0.00 11.46 19.59 13.46 9.96 0.00 0.00 158.61 - 10.45 51.08 1960 0.00 0.42 16.37 27.68 17.37 5.25 4.50 9.46 0.00 0.00 0.45 0.55 1.30 0.00 17.19 0.00 0.00 11.45 19.53 12.37 9.95 0.00 0.00 153.84 - 10.45 51.08 1961 0.00 0.23 15.22 27.71 17.33 4.37 4.57 9.46 0.00 0.00 0.38 0.38 1.01 0.00 16.03 0.00 0.00 11.45 19.51 12.18 9.96 0.00 0.00 149.80 - 10.45 51.08 1962 0.00 0.14 15.51 30.25 18.10 4.14 4.99 9.67 0.00 0.00 0.33 0.22 0.95 0.00 16.63 0.00 0.00 11.82 21.04 12.78 10.74 0.00 0.00 157.30 - 10.45 51.08 1963 0.00 0.00 13.83 30.25 16.43 3.70 4.76 9.04 0.00 0.00 0.18 0.06 0.85 0.00 12.57 0.00 0.00 11.05 19.18 11.74 10.05 0.00 0.00 143.69 - 10.45 51.08 1964 0.00 0.00 12.32 32.61 16.84 2.72 4.98 8.77 0.00 0.00 0.14 0.07 0.68 0.00 12.56 0.00 0.00 11.35 19.61 11.91 10.32 0.00 0.00 144.87 - 10.45 51.08 1965 0.00 0.00 10.83 32.48 16.20 2.40 5.04 8.75 0.00 0.00 0.06 0.06 0.49 0.00 12.22 0.00 0.00 11.32 19.04 10.83 10.29 0.00 0.00 140.02 - 10.45 51.08 1966 0.00 0.00 10.65 36.77 16.35 2.06 5.35 9.12 0.00 0.00 0.05 0.04 0.47 0.00 10.27 0.00 0.00 11.80 19.31 10.40 10.19 0.00 0.00 142.82 - 10.45 51.08 1967 0.00 0.00 10.04 42.29 17.68 1.89 5.93 9.89 0.00 0.00 0.00 0.01 0.39 0.00 10.40 0.00 0.00 12.81 20.37 11.12 11.06 0.00 0.00 153.89 - 10.45 51.08 1968 0.00 0.00 8.03 45.86 17.59 1.66 6.13 9.96 0.00 0.00 0.00 0.00 0.32 0.00 8.98 0.00 0.00 12.30 20.51 10.93 11.13 0.00 0.00 153.41 - 10.45 51.08 1969 0.00 0.00 6.94 48.27 17.37 1.37 6.20 9.86 0.00 0.00 0.00 0.01 0.14 0.00 8.15 0.00 0.00 12.19 20.31 10.00 11.03 0.00 0.00 151.84 - 10.45 51.08 1970 0.00 0.00 6.31 49.07 17.25 1.11 6.33 9.84 0.00 0.00 0.00 0.00 0.00 0.00 6.72 0.00 0.00 12.16 18.53 9.57 11.00 0.00 0.00 147.91 - 10.45 51.08 1971 0.00 0.00 6.05 51.92 17.06 0.90 6.47 9.81 0.00 0.00 0.00 0.00 0.00 0.00 6.04 0.00 0.00 12.12 17.90 8.81 10.97 0.00 0.00 148.06 - 10.45 51.08 1972 0.00 0.00 5.39 48.60 15.71 0.56 6.21 9.14 0.00 0.00 0.00 0.00 0.00 0.00 4.60 0.00 0.00 10.76 16.14 7.73 10.22 0.00 0.00 135.04 - 10.45 51.08 1973 0.00 0.00 4.98 54.90 15.47 0.40 6.48 9.35 0.00 0.00 0.00 0.00 0.00 0.00 4.39 0.00 0.00 10.45 15.95 7.03 10.45 0.00 0.00 139.85 - 10.45 51.08 1974 0.00 0.00 3.81 51.91 13.83 0.20 6.17 8.64 0.00 0.00 0.00 0.00 0.00 0.00 3.88 0.00 0.00 9.66 14.23 6.34 9.66 0.00 0.00 128.32 - 10.45 51.08 1975 0.00 0.00 3.94 60.67 14.60 0.00 6.70 9.20 0.00 0.00 0.00 0.00 0.00 0.00 2.99 0.00 0.00 10.28 15.15 5.80 10.28 0.00 0.00 139.62 - 10.45 51.08 1976 0.00 0.00 3.16 61.22 13.21 0.00 6.65 8.46 0.00 0.00 0.00 0.00 0.00 0.00 2.54 0.00 0.00 10.05 14.28 5.09 9.52 0.00 0.00 134.16 - 10.45 51.08 1977 0.00 0.00 2.25 55.40 11.35 0.00 6.17 7.07 0.00 0.00 0.00 0.00 0.00 0.00 1.80 0.00 0.00 8.96 12.73 4.48 8.49 0.00 0.00 118.70 - 10.45 51.08 1978 0.00 0.00 1.51 59.01 11.30 0.00 6.36 7.12 0.00 0.00 0.00 0.00 0.00 0.00 1.69 0.00 0.00 8.54 12.34 3.97 7.59 0.00 0.00 119.43 - 10.45 51.08 1979 0.00 0.00 1.51 65.78 11.61 0.00 6.75 7.39 0.00 0.00 0.00 0.00 0.00 0.00 1.51 0.00 0.00 8.38 12.81 3.76 7.89 0.00 0.00 127.38 - 10.45 51.08 1980 0.00 0.00 1.02 65.18 11.34 0.00 6.76 7.22 0.00 0.00 0.00 0.00 0.00 0.00 1.41 0.00 0.00 8.19 12.04 3.37 7.71 0.00 0.00 124.23 - 10.45 51.08 1981 0.00 0.00 0.96 71.84 11.07 0.00 6.88 7.09 0.00 0.00 0.00 0.00 0.00 0.00 1.16 0.00 0.00 7.56 10.87 2.74 7.09 0.00 0.00 127.26 - 10.45 51.08 1982 0.00 0.00 0.75 76.73 10.79 0.00 7.15 7.23 0.00 0.00 0.00 0.00 0.00 0.00 0.71 0.00 0.00 7.71 10.60 2.72 7.23 0.00 0.00 131.61 - 10.45 51.08 1983 0.00 0.00 0.48 65.52 9.52 0.00 6.59 6.39 0.00 0.00 0.00 0.00 0.00 0.00 0.36 0.00 0.00 6.39 9.37 2.22 6.39 0.00 0.00 113.22 - 10.45 51.08 1984 0.00 0.00 0.46 72.64 9.08 0.00 6.92 6.43 0.00 0.00 0.00 0.00 0.00 0.00 0.34 0.00 0.00 6.43 9.43 2.04 6.43 0.00 0.00 120.18 - 10.45 51.08 1985 0.00 0.00 0.41 72.08 8.19 0.00 6.68 6.07 0.00 0.00 0.00 0.00 0.00 0.00 0.20 0.00 0.00 5.66 8.49 1.72 6.07 0.00 0.00 115.57 - 10.45 51.08 1986 0.00 0.00 0.42 77.16 8.64 0.00 7.37 5.57 0.00 0.00 0.00 0.00 0.00 0.00 0.20 0.00 0.00 5.57 9.00 1.78 6.43 0.00 0.00 122.14 - 10.45 51.08 1987 0.00 0.00 0.40 75.49 8.38 0.00 7.33 5.42 0.00 0.00 0.00 0.00 0.00 0.00 0.19 0.00 0.00 5.42 8.33 1.67 6.25 0.00 0.00 118.88 - 10.45 51.08 1988 0.00 0.00 0.38 77.38 8.21 0.00 7.51 5.35 0.00 0.00 0.00 0.00 0.00 0.00 0.18 0.00 0.00 5.35 8.23 1.60 6.17 0.00 0.00 120.35 - 10.45 51.08 1989 0.00 0.00 0.36 78.46 7.72 0.00 7.75 5.27 0.00 0.00 0.00 0.00 0.00 0.00 0.17 0.00 0.00 5.27 8.11 1.55 6.09 0.00 0.00 120.75 - 10.45 51.08 1990 0.00 0.00 0.22 77.35 7.22 0.00 7.53 4.59 0.00 0.00 0.00 0.00 0.00 0.00 0.07 0.00 0.00 4.97 7.64 1.42 5.73 0.00 0.00 116.73 - 10.45 51.08 1991 0.00 0.00 0.21 84.31 7.25 0.00 7.89 4.64 0.00 0.00 0.00 0.00 0.00 0.00 0.07 0.00 0.00 5.02 7.73 1.30 5.79 0.00 0.00 124.21 - 10.45 51.08 1992 0.00 0.00 0.18 78.62 5.88 0.00 7.18 4.12 0.00 0.00 0.00 0.00 0.00 0.00 0.06 0.00 0.00 4.46 6.52 1.14 5.15 0.00 0.00 113.32 - 10.45 51.08 1993 0.00 0.00 0.16 78.26 5.18 0.00 7.17 3.87 0.00 0.00 0.00 0.00 0.00 0.00 0.05 0.00 0.00 3.87 6.13 1.00 4.84 0.00 0.00 110.55 - 10.45 51.08 1994 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 - 10.45 51.08 1995 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 - 10.45 51.08 1996 0.00 0.49 1.20 1.00 0.81 0.51 0.25 1.10 0.00 0.00 0.13 0.51 0.54 0.00 0.81 0.00 0.00 0.61 0.79 0.84 0.69 64.33 0.00 74.62 - 10.45 51.08 1997 0.00 0.58 2.58 2.35 1.80 1.11 0.56 2.45 0.00 0.00 0.18 0.65 0.73 0.00 1.79 0.00 0.00 1.35 1.69 1.85 1.52 96.75 0.00 117.96 - 10.45 51.08 1998 0.00 0.90 5.15 4.99 3.62 2.05 1.22 4.96 0.00 0.00 0.30 1.09 1.24 0.00 3.54 0.00 0.00 2.73 3.44 3.68 3.07 105.06 0.00 147.04 - 10.45 51.08 1999 0.00 1.09 8.86 8.37 6.26 3.31 2.15 8.59 0.00 0.00 0.42 1.48 1.70 0.00 6.02 0.00 0.00 4.73 5.95 6.23 5.32 15.25 0.00 85.74 - 10.45 51.08 2000 0.00 1.21 13.42 13.10 9.56 4.70 3.32 13.14 0.00 0.00 0.54 1.86 2.11 0.00 9.12 0.00 0.00 7.23 9.10 9.54 8.14 0.00 0.00 106.08 - 10.45 51.08 2001 0.00 1.13 16.73 16.87 12.07 5.51 4.22 16.58 0.00 0.00 0.57 1.90 2.24 0.00 11.34 0.00 0.00 9.13 11.48 11.94 10.27 0.00 0.00 131.99 - 10.45 51.08 2002 0.00 0.89 18.91 20.18 13.80 5.86 4.86 19.06 0.00 0.00 0.51 1.53 2.04 0.00 12.79 0.00 0.00 10.51 13.21 13.60 11.82 0.00 0.00 149.56 - 10.45 51.08 2003 0.00 0.76 19.59 22.69 14.59 5.71 5.18 20.15 0.00 0.00 0.46 1.27 1.86 0.00 13.20 0.00 0.00 11.12 13.97 14.24 12.51 0.00 0.00 157.30 - 10.45 51.08 2004 0.00 0.73 19.77 23.67 15.29 5.43 5.48 21.13 0.00 0.00 0.45 1.23 1.78 0.00 12.96 0.00 0.00 11.71 14.69 14.35 13.17 0.00 0.00 161.85 - 10.45 51.08 2005 0.00 0.50 20.09 26.07 15.87 5.19 5.75 21.90 0.00 0.00 0.38 0.79 1.53 0.00 13.02 0.00 0.00 12.14 15.23 14.72 13.66 0.00 0.00 166.84 - 10.45 51.08 2006 0.00 0.28 19.27 28.16 16.32 4.70 5.95 22.56 0.00 0.00 0.33 0.55 1.28 0.00 12.07 0.00 0.00 12.52 15.69 14.84 14.09 0.00 0.00 168.60 - 10.45 51.08 2007 0.00 0.16 18.27 29.82 16.10 3.94 6.08 22.49 0.00 0.00 0.21 0.25 1.08 0.00 12.09 0.00 0.00 12.78 16.00 15.05 14.38 0.00 0.00 168.71 - 10.45 51.08 2008 0.00 0.05 18.68 33.94 16.90 3.48 6.42 24.47 0.00 0.00 0.24 0.23 0.99 0.00 12.61 0.00 0.00 13.98 16.90 15.53 15.73 0.00 0.00 180.16 - 10.45 51.08 2009 0.00 0.00 15.93 34.11 16.07 2.91 6.24 22.43 0.00 0.00 0.10 0.03 0.80 0.00 11.08 0.00 0.00 13.13 15.86 13.81 14.22 0.00 0.00 166.72 - 10.45 51.08 2010 0.00 0.00 15.24 34.39 15.68 2.41 6.23 21.99 0.00 0.00 0.05 0.05 0.57 0.00 10.16 0.00 0.00 12.87 15.55 12.95 13.94 0.00 0.00 162.08 - 10.45 51.08 2011 0.00 0.00 14.54 38.71 16.15 1.93 6.53 22.25 0.00 0.00 0.00 0.04 0.37 0.00 9.72 0.00 0.00 13.35 16.13 12.98 13.90 0.00 0.00 166.61 - 10.45 51.08 2012 0.00 0.00 14.48 42.06 16.42 1.63 6.82 22.21 0.00 0.00 0.00 0.03 0.18 0.00 8.85 0.00 0.00 13.67 16.52 11.98 14.24 0.00 0.00 169.07 diff --git a/rLPJGUESS/inst/extdata/outputsForTests/run_nyear_spinup/outDirectory/runoff.out b/rLPJGUESS/inst/extdata/outputsForTests/run_nyear_spinup/outDirectory/runoff.out deleted file mode 100644 index c9e2527..0000000 --- a/rLPJGUESS/inst/extdata/outputsForTests/run_nyear_spinup/outDirectory/runoff.out +++ /dev/null @@ -1,63 +0,0 @@ - Lon Lat Year Surf Drain Base Total - 10.45 51.08 1951 60.0 86.7 3.7 150.4 - 10.45 51.08 1952 151.8 160.5 12.5 324.9 - 10.45 51.08 1953 28.6 51.3 2.3 82.2 - 10.45 51.08 1954 18.5 32.1 0.9 51.5 - 10.45 51.08 1955 58.1 77.6 7.7 143.4 - 10.45 51.08 1956 127.3 113.5 5.4 246.2 - 10.45 51.08 1957 12.8 66.8 0.5 80.1 - 10.45 51.08 1958 93.6 34.0 5.0 132.6 - 10.45 51.08 1959 0.0 5.7 0.0 5.7 - 10.45 51.08 1960 45.8 0.0 0.6 46.4 - 10.45 51.08 1961 89.2 66.6 4.0 159.8 - 10.45 51.08 1962 3.3 0.0 2.1 5.4 - 10.45 51.08 1963 0.8 0.0 0.2 1.0 - 10.45 51.08 1964 23.7 0.0 0.0 23.7 - 10.45 51.08 1965 13.9 0.0 0.7 14.6 - 10.45 51.08 1966 82.6 0.0 2.7 85.3 - 10.45 51.08 1967 0.2 31.0 0.2 31.4 - 10.45 51.08 1968 15.2 0.0 1.2 16.4 - 10.45 51.08 1969 47.7 0.0 3.8 51.5 - 10.45 51.08 1970 32.7 0.0 2.0 34.7 - 10.45 51.08 1971 0.0 0.0 0.0 0.0 - 10.45 51.08 1972 51.6 0.0 0.3 51.8 - 10.45 51.08 1973 2.9 0.0 0.6 3.5 - 10.45 51.08 1974 19.6 0.0 1.3 20.8 - 10.45 51.08 1975 0.0 6.8 0.0 6.8 - 10.45 51.08 1976 0.3 0.0 0.1 0.5 - 10.45 51.08 1977 88.3 0.0 1.7 90.0 - 10.45 51.08 1978 0.0 14.3 0.0 14.3 - 10.45 51.08 1979 51.4 16.4 3.2 71.1 - 10.45 51.08 1980 0.0 0.0 0.0 0.0 - 10.45 51.08 1981 63.7 0.0 3.1 66.8 - 10.45 51.08 1982 11.8 0.0 1.1 12.8 - 10.45 51.08 1983 51.4 0.0 2.2 53.7 - 10.45 51.08 1984 56.9 0.0 6.6 63.5 - 10.45 51.08 1985 2.6 8.9 0.6 12.2 - 10.45 51.08 1986 35.5 0.0 2.7 38.2 - 10.45 51.08 1987 121.0 25.4 7.6 154.1 - 10.45 51.08 1988 22.1 87.9 4.2 114.3 - 10.45 51.08 1989 6.8 0.0 0.4 7.1 - 10.45 51.08 1990 2.7 0.0 0.5 3.2 - 10.45 51.08 1991 1.6 0.0 0.0 1.6 - 10.45 51.08 1992 53.7 0.0 1.2 54.9 - 10.45 51.08 1993 51.7 0.0 2.2 53.9 - 10.45 51.08 1994 56.8 46.4 2.5 105.6 - 10.45 51.08 1995 47.2 177.8 10.7 235.6 - 10.45 51.08 1996 98.4 226.8 14.6 339.8 - 10.45 51.08 1997 23.6 111.9 5.8 141.3 - 10.45 51.08 1998 49.3 120.2 1.2 170.7 - 10.45 51.08 1999 7.2 69.9 2.3 79.4 - 10.45 51.08 2000 10.9 96.1 2.3 109.2 - 10.45 51.08 2001 22.7 46.7 5.1 74.5 - 10.45 51.08 2002 130.9 158.1 4.8 293.8 - 10.45 51.08 2003 6.9 38.3 0.7 45.9 - 10.45 51.08 2004 55.7 0.0 0.9 56.6 - 10.45 51.08 2005 2.3 0.0 0.7 3.0 - 10.45 51.08 2006 3.4 0.0 0.1 3.5 - 10.45 51.08 2007 106.3 0.0 0.2 106.5 - 10.45 51.08 2008 8.6 2.2 0.6 11.4 - 10.45 51.08 2009 36.2 0.0 1.4 37.6 - 10.45 51.08 2010 112.4 0.0 3.6 116.0 - 10.45 51.08 2011 63.5 20.9 1.0 85.5 - 10.45 51.08 2012 3.9 0.0 0.1 4.0 diff --git a/rLPJGUESS/inst/extdata/outputsForTests/run_nyear_spinup/outDirectory/speciesheight.out b/rLPJGUESS/inst/extdata/outputsForTests/run_nyear_spinup/outDirectory/speciesheight.out deleted file mode 100644 index 079a92d..0000000 --- a/rLPJGUESS/inst/extdata/outputsForTests/run_nyear_spinup/outDirectory/speciesheight.out +++ /dev/null @@ -1,63 +0,0 @@ - Lon Lat Year Abi_alb BES Bet_pen Bet_pub Car_bet Cor_ave Fag_syl Fra_exc Jun_oxy MRS Pic_abi Pic_sit Pin_syl Pin_hal Pop_tre Que_coc Que_ile Que_pub Que_rob Til_cor Ulm_gla C3_gr C4_gr - 10.45 51.08 1951 0.00 0.77 4.57 4.85 4.57 4.35 4.57 4.58 0.00 0.00 0.00 0.00 0.00 0.00 4.56 0.00 0.00 4.58 4.58 4.53 4.58 0.00 0.00 - 10.45 51.08 1952 0.00 0.80 5.16 5.53 5.16 4.83 5.17 5.17 0.00 0.00 3.86 0.00 4.09 0.00 5.12 0.00 0.00 5.17 5.14 5.06 5.17 0.00 0.00 - 10.45 51.08 1953 0.00 0.83 5.74 6.22 5.75 5.21 5.76 5.77 0.00 0.00 4.14 3.88 4.36 0.00 5.69 0.00 0.00 5.77 5.73 5.64 5.77 0.00 0.00 - 10.45 51.08 1954 0.00 0.85 6.11 6.70 6.12 5.45 6.14 6.14 0.00 0.00 4.29 4.00 4.52 0.00 6.05 0.00 0.00 6.14 6.10 5.99 6.14 0.00 0.00 - 10.45 51.08 1955 0.00 0.85 6.37 7.12 6.39 5.61 6.42 6.42 0.00 0.00 4.33 4.01 4.58 0.00 6.31 0.00 0.00 6.42 6.38 6.25 6.42 0.00 0.00 - 10.45 51.08 1956 0.00 0.85 6.62 7.51 6.65 5.73 6.69 6.68 0.00 0.00 4.37 4.01 4.64 0.00 6.55 0.00 0.00 6.68 6.63 6.48 6.68 0.00 0.00 - 10.45 51.08 1957 0.00 0.84 6.85 7.91 6.88 5.83 6.94 6.93 0.00 0.00 4.37 4.01 4.67 0.00 6.76 0.00 0.00 6.93 6.87 6.69 6.93 0.00 0.00 - 10.45 51.08 1958 0.00 0.84 7.04 8.25 7.09 5.88 7.16 7.13 0.00 0.00 4.37 4.01 4.67 0.00 6.95 0.00 0.00 7.13 7.08 6.87 7.13 0.00 0.00 - 10.45 51.08 1959 0.00 0.84 7.10 8.43 7.15 5.87 7.23 7.21 0.00 0.00 4.37 4.01 4.67 0.00 6.99 0.00 0.00 7.21 7.15 6.88 7.21 0.00 0.00 - 10.45 51.08 1960 0.00 0.84 7.27 8.76 7.34 5.90 7.43 7.40 0.00 0.00 4.37 4.01 4.67 0.00 7.14 0.00 0.00 7.40 7.33 7.03 7.40 0.00 0.00 - 10.45 51.08 1961 0.00 0.84 7.42 9.10 7.52 5.92 7.64 7.59 0.00 0.00 4.37 4.01 4.67 0.00 7.28 0.00 0.00 7.59 7.52 7.17 7.59 0.00 0.00 - 10.45 51.08 1962 0.00 0.84 7.47 9.29 7.56 6.04 7.68 7.63 0.00 0.00 4.37 4.01 4.67 0.00 7.31 0.00 0.00 7.63 7.56 7.18 7.63 0.00 0.00 - 10.45 51.08 1963 0.00 0.73 7.59 9.59 7.70 6.04 7.84 7.78 0.00 0.00 4.37 0.00 4.67 0.00 7.42 0.00 0.00 7.78 7.70 7.30 7.78 0.00 0.00 - 10.45 51.08 1964 0.00 0.00 7.65 9.80 7.77 6.04 7.93 7.86 0.00 0.00 4.37 0.00 4.67 0.00 7.48 0.00 0.00 7.86 7.86 7.34 7.86 0.00 0.00 - 10.45 51.08 1965 0.00 0.00 7.78 10.15 7.93 6.05 8.12 8.02 0.00 0.00 4.37 0.00 4.67 0.00 7.59 0.00 0.00 8.02 8.02 7.47 8.02 0.00 0.00 - 10.45 51.08 1966 0.00 0.00 7.92 10.53 8.10 6.06 8.34 8.20 0.00 0.00 4.37 0.00 4.67 0.00 7.72 0.00 0.00 8.20 8.20 7.61 8.20 0.00 0.00 - 10.45 51.08 1967 0.00 0.00 8.02 10.88 8.23 6.06 8.51 8.34 0.00 0.00 0.00 0.00 4.67 0.00 7.81 0.00 0.00 8.34 8.34 7.71 8.34 0.00 0.00 - 10.45 51.08 1968 0.00 0.00 8.08 11.18 8.32 6.06 8.64 8.45 0.00 0.00 0.00 0.00 4.67 0.00 7.86 0.00 0.00 8.45 8.45 7.76 8.45 0.00 0.00 - 10.45 51.08 1969 0.00 0.00 8.15 11.48 8.41 6.06 8.78 8.55 0.00 0.00 0.00 0.00 4.67 0.00 7.91 0.00 0.00 8.55 8.55 7.80 8.55 0.00 0.00 - 10.45 51.08 1970 0.00 0.00 8.21 11.77 8.50 6.06 8.91 8.65 0.00 0.00 0.00 0.00 0.00 0.00 7.95 0.00 0.00 8.65 8.65 7.85 8.65 0.00 0.00 - 10.45 51.08 1971 0.00 0.00 8.21 11.93 8.50 6.06 8.93 8.66 0.00 0.00 0.00 0.00 0.00 0.00 7.95 0.00 0.00 8.66 8.66 7.85 8.66 0.00 0.00 - 10.45 51.08 1972 0.00 0.00 8.27 12.27 8.60 6.06 9.08 8.77 0.00 0.00 0.00 0.00 0.00 0.00 8.00 0.00 0.00 8.77 8.77 7.90 8.77 0.00 0.00 - 10.45 51.08 1973 0.00 0.00 8.27 12.44 8.61 6.06 9.10 8.79 0.00 0.00 0.00 0.00 0.00 0.00 8.00 0.00 0.00 8.79 8.79 7.90 8.79 0.00 0.00 - 10.45 51.08 1974 0.00 0.00 8.33 12.78 8.71 6.06 9.26 8.90 0.00 0.00 0.00 0.00 0.00 0.00 8.05 0.00 0.00 8.90 8.90 7.95 8.90 0.00 0.00 - 10.45 51.08 1975 0.00 0.00 8.36 13.04 8.77 0.00 9.36 8.97 0.00 0.00 0.00 0.00 0.00 0.00 8.07 0.00 0.00 8.97 8.97 7.97 8.97 0.00 0.00 - 10.45 51.08 1976 0.00 0.00 8.36 13.13 8.77 0.00 9.36 8.97 0.00 0.00 0.00 0.00 0.00 0.00 8.07 0.00 0.00 8.97 8.97 7.97 8.97 0.00 0.00 - 10.45 51.08 1977 0.00 0.00 8.40 13.43 8.85 0.00 9.49 9.06 0.00 0.00 0.00 0.00 0.00 0.00 8.10 0.00 0.00 9.06 9.06 8.00 9.06 0.00 0.00 - 10.45 51.08 1978 0.00 0.00 8.44 13.73 8.92 0.00 9.62 9.14 0.00 0.00 0.00 0.00 0.00 0.00 8.13 0.00 0.00 9.14 9.14 8.03 9.14 0.00 0.00 - 10.45 51.08 1979 0.00 0.00 8.47 13.98 8.97 0.00 9.72 9.20 0.00 0.00 0.00 0.00 0.00 0.00 8.15 0.00 0.00 9.20 9.20 8.05 9.20 0.00 0.00 - 10.45 51.08 1980 0.00 0.00 8.49 14.24 9.02 0.00 9.82 9.26 0.00 0.00 0.00 0.00 0.00 0.00 8.16 0.00 0.00 9.26 9.26 8.06 9.26 0.00 0.00 - 10.45 51.08 1981 0.00 0.00 8.52 14.53 9.08 0.00 9.93 9.33 0.00 0.00 0.00 0.00 0.00 0.00 8.18 0.00 0.00 9.33 9.33 8.08 9.33 0.00 0.00 - 10.45 51.08 1982 0.00 0.00 8.52 14.63 9.08 0.00 9.93 9.33 0.00 0.00 0.00 0.00 0.00 0.00 8.18 0.00 0.00 9.33 9.33 8.08 9.33 0.00 0.00 - 10.45 51.08 1983 0.00 0.00 8.53 14.87 9.12 0.00 10.03 9.38 0.00 0.00 0.00 0.00 0.00 0.00 8.19 0.00 0.00 9.38 9.38 8.10 9.38 0.00 0.00 - 10.45 51.08 1984 0.00 0.00 8.55 15.09 9.15 0.00 10.11 9.42 0.00 0.00 0.00 0.00 0.00 0.00 8.20 0.00 0.00 9.42 9.42 8.10 9.42 0.00 0.00 - 10.45 51.08 1985 0.00 0.00 8.56 15.34 9.19 0.00 10.22 9.47 0.00 0.00 0.00 0.00 0.00 0.00 8.21 0.00 0.00 9.47 9.47 8.12 9.47 0.00 0.00 - 10.45 51.08 1986 0.00 0.00 8.59 15.61 9.24 0.00 10.33 9.53 0.00 0.00 0.00 0.00 0.00 0.00 8.22 0.00 0.00 9.53 9.53 8.14 9.53 0.00 0.00 - 10.45 51.08 1987 0.00 0.00 8.60 15.88 9.28 0.00 10.43 9.58 0.00 0.00 0.00 0.00 0.00 0.00 8.23 0.00 0.00 9.58 9.58 8.14 9.58 0.00 0.00 - 10.45 51.08 1988 0.00 0.00 8.61 16.11 9.31 0.00 10.53 9.61 0.00 0.00 0.00 0.00 0.00 0.00 8.24 0.00 0.00 9.61 9.61 8.15 9.61 0.00 0.00 - 10.45 51.08 1989 0.00 0.00 8.61 16.29 9.32 0.00 10.57 9.63 0.00 0.00 0.00 0.00 0.00 0.00 8.24 0.00 0.00 9.63 9.63 8.15 9.63 0.00 0.00 - 10.45 51.08 1990 0.00 0.00 8.62 16.55 9.36 0.00 10.68 9.68 0.00 0.00 0.00 0.00 0.00 0.00 8.25 0.00 0.00 9.68 9.68 8.17 9.68 0.00 0.00 - 10.45 51.08 1991 0.00 0.00 8.62 16.70 9.36 0.00 10.69 9.68 0.00 0.00 0.00 0.00 0.00 0.00 8.25 0.00 0.00 9.68 9.68 8.17 9.68 0.00 0.00 - 10.45 51.08 1992 0.00 0.00 8.63 16.88 9.37 0.00 10.74 9.69 0.00 0.00 0.00 0.00 0.00 0.00 8.25 0.00 0.00 9.69 9.69 8.17 9.69 0.00 0.00 - 10.45 51.08 1993 0.00 0.00 8.64 17.13 9.41 0.00 10.85 9.74 0.00 0.00 0.00 0.00 0.00 0.00 8.26 0.00 0.00 9.74 9.74 8.18 9.74 0.00 0.00 - 10.45 51.08 1994 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 - 10.45 51.08 1995 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 - 10.45 51.08 1996 0.00 0.59 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 - 10.45 51.08 1997 0.00 0.69 0.00 4.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 - 10.45 51.08 1998 0.00 0.76 4.57 4.87 4.57 4.35 4.57 4.58 0.00 0.00 0.00 0.00 0.00 0.00 4.53 0.00 0.00 4.58 4.58 4.51 4.58 0.00 0.00 - 10.45 51.08 1999 0.00 0.82 5.31 5.71 5.31 4.82 5.32 5.29 0.00 0.00 3.96 0.00 4.16 0.00 5.27 0.00 0.00 5.32 5.32 5.24 5.32 0.00 0.00 - 10.45 51.08 2000 0.00 0.85 5.86 6.37 5.88 5.24 5.89 5.86 0.00 0.00 4.22 3.96 4.42 0.00 5.82 0.00 0.00 5.89 5.89 5.79 5.89 0.00 0.00 - 10.45 51.08 2001 0.00 0.85 6.29 6.91 6.30 5.52 6.33 6.29 0.00 0.00 4.32 4.02 4.54 0.00 6.23 0.00 0.00 6.33 6.33 6.20 6.33 0.00 0.00 - 10.45 51.08 2002 0.00 0.85 6.58 7.36 6.60 5.67 6.64 6.59 0.00 0.00 4.35 4.02 4.59 0.00 6.52 0.00 0.00 6.63 6.63 6.49 6.63 0.00 0.00 - 10.45 51.08 2003 0.00 0.85 6.79 7.70 6.82 5.74 6.86 6.81 0.00 0.00 4.35 4.02 4.61 0.00 6.71 0.00 0.00 6.86 6.86 6.65 6.86 0.00 0.00 - 10.45 51.08 2004 0.00 0.85 6.98 8.03 7.02 5.79 7.07 7.01 0.00 0.00 4.35 4.02 4.61 0.00 6.88 0.00 0.00 7.06 7.06 6.82 7.06 0.00 0.00 - 10.45 51.08 2005 0.00 0.85 7.15 8.37 7.21 5.82 7.27 7.20 0.00 0.00 4.35 4.02 4.61 0.00 7.03 0.00 0.00 7.25 7.25 6.97 7.25 0.00 0.00 - 10.45 51.08 2006 0.00 0.85 7.29 8.66 7.37 5.80 7.44 7.36 0.00 0.00 4.35 4.02 4.61 0.00 7.16 0.00 0.00 7.41 7.41 7.11 7.41 0.00 0.00 - 10.45 51.08 2007 0.00 0.85 7.48 9.04 7.56 5.81 7.66 7.59 0.00 0.00 4.35 4.02 4.61 0.00 7.34 0.00 0.00 7.65 7.65 7.28 7.65 0.00 0.00 - 10.45 51.08 2008 0.00 0.85 7.54 9.27 7.63 5.80 7.73 7.73 0.00 0.00 4.35 4.02 4.61 0.00 7.39 0.00 0.00 7.73 7.73 7.30 7.73 0.00 0.00 - 10.45 51.08 2009 0.00 0.00 7.63 9.53 7.73 5.80 7.84 7.83 0.00 0.00 4.35 0.00 4.61 0.00 7.46 0.00 0.00 7.83 7.83 7.38 7.83 0.00 0.00 - 10.45 51.08 2010 0.00 0.00 7.74 9.86 7.86 6.03 8.00 7.98 0.00 0.00 4.35 0.00 4.61 0.00 7.56 0.00 0.00 7.98 7.98 7.47 7.98 0.00 0.00 - 10.45 51.08 2011 0.00 0.00 7.82 10.15 7.96 6.03 8.11 8.08 0.00 0.00 0.00 0.00 4.61 0.00 7.62 0.00 0.00 8.08 8.08 7.52 8.08 0.00 0.00 - 10.45 51.08 2012 0.00 0.00 7.85 10.38 8.00 6.03 8.17 8.14 0.00 0.00 0.00 0.00 4.61 0.00 7.65 0.00 0.00 8.14 8.14 7.53 8.14 0.00 0.00 diff --git a/rLPJGUESS/inst/extdata/outputsForTests/run_nyear_spinup/outDirectory/vmaxnlim.out b/rLPJGUESS/inst/extdata/outputsForTests/run_nyear_spinup/outDirectory/vmaxnlim.out deleted file mode 100644 index b47afc1..0000000 --- a/rLPJGUESS/inst/extdata/outputsForTests/run_nyear_spinup/outDirectory/vmaxnlim.out +++ /dev/null @@ -1,63 +0,0 @@ - Lon Lat YearAbi_alb BESBet_penBet_pubCar_betCor_aveFag_sylFra_excJun_oxy MRSPic_abiPic_sitPin_sylPin_halPop_treQue_cocQue_ileQue_pubQue_robTil_corUlm_gla C3_gr C4_gr Total - 10.45 51.08 1951 0.00 1.00 1.00 1.00 1.00 1.00 1.00 1.00 0.00 0.00 1.00 1.00 1.00 0.00 1.00 0.00 0.00 1.00 1.00 1.00 1.00 1.00 0.00 1.00 - 10.45 51.08 1952 0.00 1.00 1.00 1.00 1.00 1.00 1.00 1.00 0.00 0.00 1.00 1.00 1.00 0.00 1.00 0.00 0.00 1.00 1.00 1.00 1.00 1.00 0.00 1.00 - 10.45 51.08 1953 0.00 1.00 1.00 1.00 1.00 1.00 1.00 1.00 0.00 0.00 1.00 1.00 1.00 0.00 1.00 0.00 0.00 1.00 1.00 1.00 1.00 0.00 0.00 1.00 - 10.45 51.08 1954 0.00 1.00 1.00 1.00 1.00 1.00 1.00 1.00 0.00 0.00 1.00 1.00 1.00 0.00 1.00 0.00 0.00 1.00 1.00 1.00 1.00 0.00 0.00 1.00 - 10.45 51.08 1955 0.00 1.00 1.00 1.00 1.00 1.00 1.00 1.00 0.00 0.00 1.00 1.00 1.00 0.00 1.00 0.00 0.00 1.00 1.00 1.00 1.00 0.00 0.00 1.00 - 10.45 51.08 1956 0.00 1.00 1.00 1.00 1.00 1.00 1.00 1.00 0.00 0.00 1.00 1.00 1.00 0.00 1.00 0.00 0.00 1.00 1.00 1.00 1.00 0.00 0.00 1.00 - 10.45 51.08 1957 0.00 1.00 1.00 1.00 1.00 1.00 1.00 1.00 0.00 0.00 1.00 1.00 1.00 0.00 1.00 0.00 0.00 1.00 1.00 1.00 1.00 0.00 0.00 1.00 - 10.45 51.08 1958 0.00 1.00 1.00 1.00 1.00 1.00 1.00 1.00 0.00 0.00 1.00 1.00 1.00 0.00 1.00 0.00 0.00 1.00 1.00 1.00 1.00 0.00 0.00 1.00 - 10.45 51.08 1959 0.00 1.00 1.00 1.00 1.00 1.00 1.00 1.00 0.00 0.00 1.00 1.00 1.00 0.00 1.00 0.00 0.00 1.00 1.00 1.00 1.00 0.00 0.00 1.00 - 10.45 51.08 1960 0.00 1.00 1.00 1.00 1.00 1.00 1.00 1.00 0.00 0.00 1.00 1.00 1.00 0.00 1.00 0.00 0.00 1.00 1.00 1.00 1.00 0.00 0.00 1.00 - 10.45 51.08 1961 0.00 1.00 1.00 1.00 1.00 1.00 1.00 1.00 0.00 0.00 1.00 1.00 1.00 0.00 1.00 0.00 0.00 1.00 1.00 1.00 1.00 0.00 0.00 1.00 - 10.45 51.08 1962 0.00 1.00 1.00 1.00 1.00 1.00 1.00 1.00 0.00 0.00 1.00 1.00 1.00 0.00 1.00 0.00 0.00 1.00 1.00 1.00 1.00 0.00 0.00 1.00 - 10.45 51.08 1963 0.00 1.00 1.00 1.00 1.00 1.00 1.00 1.00 0.00 0.00 1.00 1.00 1.00 0.00 1.00 0.00 0.00 1.00 1.00 1.00 1.00 0.00 0.00 1.00 - 10.45 51.08 1964 0.00 0.00 1.00 1.00 1.00 1.00 1.00 1.00 0.00 0.00 1.00 1.00 1.00 0.00 1.00 0.00 0.00 1.00 1.00 1.00 1.00 0.00 0.00 1.00 - 10.45 51.08 1965 0.00 0.00 1.00 1.00 1.00 1.00 1.00 1.00 0.00 0.00 1.00 1.00 1.00 0.00 1.00 0.00 0.00 1.00 1.00 1.00 1.00 0.00 0.00 1.00 - 10.45 51.08 1966 0.00 0.00 1.00 1.00 1.00 1.00 1.00 1.00 0.00 0.00 1.00 1.00 1.00 0.00 1.00 0.00 0.00 1.00 1.00 1.00 1.00 0.00 0.00 1.00 - 10.45 51.08 1967 0.00 0.00 1.00 1.00 1.00 1.00 1.00 1.00 0.00 0.00 0.00 1.00 1.00 0.00 1.00 0.00 0.00 1.00 1.00 1.00 1.00 0.00 0.00 1.00 - 10.45 51.08 1968 0.00 0.00 1.00 1.00 1.00 1.00 1.00 1.00 0.00 0.00 0.00 1.00 1.00 0.00 1.00 0.00 0.00 1.00 1.00 1.00 1.00 0.00 0.00 1.00 - 10.45 51.08 1969 0.00 0.00 1.00 1.00 1.00 1.00 1.00 1.00 0.00 0.00 0.00 1.00 1.00 0.00 1.00 0.00 0.00 1.00 1.00 1.00 1.00 0.00 0.00 1.00 - 10.45 51.08 1970 0.00 0.00 1.00 1.00 1.00 1.00 1.00 1.00 0.00 0.00 0.00 1.00 0.00 0.00 1.00 0.00 0.00 1.00 1.00 1.00 1.00 0.00 0.00 1.00 - 10.45 51.08 1971 0.00 0.00 1.00 1.00 1.00 1.00 1.00 1.00 0.00 0.00 0.00 1.00 0.00 0.00 1.00 0.00 0.00 1.00 1.00 1.00 1.00 0.00 0.00 1.00 - 10.45 51.08 1972 0.00 0.00 1.00 1.00 1.00 1.00 1.00 1.00 0.00 0.00 0.00 1.00 0.00 0.00 1.00 0.00 0.00 1.00 1.00 1.00 1.00 0.00 0.00 1.00 - 10.45 51.08 1973 0.00 0.00 1.00 1.00 1.00 1.00 1.00 1.00 0.00 0.00 0.00 1.00 0.00 0.00 1.00 0.00 0.00 1.00 1.00 1.00 1.00 0.00 0.00 1.00 - 10.45 51.08 1974 0.00 0.00 1.00 1.00 1.00 1.00 1.00 1.00 0.00 0.00 0.00 1.00 0.00 0.00 1.00 0.00 0.00 1.00 1.00 1.00 1.00 0.00 0.00 1.00 - 10.45 51.08 1975 0.00 0.00 1.00 1.00 1.00 0.00 1.00 1.00 0.00 0.00 0.00 1.00 0.00 0.00 1.00 0.00 0.00 1.00 1.00 1.00 1.00 0.00 0.00 1.00 - 10.45 51.08 1976 0.00 0.00 1.00 1.00 1.00 0.00 1.00 1.00 0.00 0.00 0.00 1.00 0.00 0.00 1.00 0.00 0.00 1.00 1.00 1.00 1.00 0.00 0.00 1.00 - 10.45 51.08 1977 0.00 0.00 1.00 1.00 1.00 0.00 1.00 1.00 0.00 0.00 0.00 1.00 0.00 0.00 1.00 0.00 0.00 1.00 1.00 1.00 1.00 0.00 0.00 1.00 - 10.45 51.08 1978 0.00 0.00 1.00 1.00 1.00 0.00 1.00 1.00 0.00 0.00 0.00 1.00 0.00 0.00 1.00 0.00 0.00 1.00 1.00 1.00 1.00 0.00 0.00 1.00 - 10.45 51.08 1979 0.00 0.00 1.00 1.00 1.00 0.00 1.00 1.00 0.00 0.00 0.00 1.00 0.00 0.00 1.00 0.00 0.00 1.00 1.00 1.00 1.00 0.00 0.00 1.00 - 10.45 51.08 1980 0.00 0.00 1.00 1.00 1.00 0.00 1.00 1.00 0.00 0.00 0.00 1.00 0.00 0.00 1.00 0.00 0.00 1.00 1.00 1.00 1.00 0.00 0.00 1.00 - 10.45 51.08 1981 0.00 0.00 1.00 1.00 1.00 0.00 1.00 1.00 0.00 0.00 0.00 1.00 0.00 0.00 1.00 0.00 0.00 1.00 1.00 1.00 1.00 0.00 0.00 1.00 - 10.45 51.08 1982 0.00 0.00 1.00 1.00 1.00 0.00 1.00 1.00 0.00 0.00 0.00 1.00 0.00 0.00 1.00 0.00 0.00 1.00 1.00 1.00 1.00 0.00 0.00 1.00 - 10.45 51.08 1983 0.00 0.00 1.00 1.00 1.00 0.00 1.00 1.00 0.00 0.00 0.00 0.00 0.00 0.00 1.00 0.00 0.00 1.00 1.00 1.00 1.00 0.00 0.00 1.00 - 10.45 51.08 1984 0.00 0.00 1.00 1.00 1.00 0.00 1.00 1.00 0.00 0.00 0.00 0.00 0.00 0.00 1.00 0.00 0.00 1.00 1.00 1.00 1.00 0.00 0.00 1.00 - 10.45 51.08 1985 0.00 0.00 1.00 1.00 1.00 0.00 1.00 1.00 0.00 0.00 0.00 0.00 0.00 0.00 1.00 0.00 0.00 1.00 1.00 1.00 1.00 0.00 0.00 1.00 - 10.45 51.08 1986 0.00 0.00 1.00 1.00 1.00 0.00 1.00 1.00 0.00 0.00 0.00 0.00 0.00 0.00 1.00 0.00 0.00 1.00 1.00 1.00 1.00 0.00 0.00 1.00 - 10.45 51.08 1987 0.00 0.00 1.00 1.00 1.00 0.00 1.00 1.00 0.00 0.00 0.00 0.00 0.00 0.00 1.00 0.00 0.00 1.00 1.00 1.00 1.00 0.00 0.00 1.00 - 10.45 51.08 1988 0.00 0.00 1.00 1.00 1.00 0.00 1.00 1.00 0.00 0.00 0.00 0.00 0.00 0.00 1.00 0.00 0.00 1.00 1.00 1.00 1.00 0.00 0.00 1.00 - 10.45 51.08 1989 0.00 0.00 1.00 1.00 1.00 0.00 1.00 1.00 0.00 0.00 0.00 0.00 0.00 0.00 1.00 0.00 0.00 1.00 1.00 1.00 1.00 0.00 0.00 1.00 - 10.45 51.08 1990 0.00 0.00 1.00 1.00 1.00 0.00 1.00 1.00 0.00 0.00 0.00 0.00 0.00 0.00 1.00 0.00 0.00 1.00 1.00 1.00 1.00 0.00 0.00 1.00 - 10.45 51.08 1991 0.00 0.00 1.00 1.00 1.00 0.00 1.00 1.00 0.00 0.00 0.00 0.00 0.00 0.00 1.00 0.00 0.00 1.00 1.00 1.00 1.00 0.00 0.00 1.00 - 10.45 51.08 1992 0.00 0.00 1.00 1.00 1.00 0.00 1.00 1.00 0.00 0.00 0.00 0.00 0.00 0.00 1.00 0.00 0.00 1.00 1.00 1.00 1.00 0.00 0.00 1.00 - 10.45 51.08 1993 0.00 0.00 1.00 1.00 1.00 0.00 1.00 1.00 0.00 0.00 0.00 0.00 0.00 0.00 1.00 0.00 0.00 1.00 1.00 1.00 1.00 0.00 0.00 1.00 - 10.45 51.08 1994 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 - 10.45 51.08 1995 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 - 10.45 51.08 1996 0.00 1.00 1.00 1.00 1.00 1.00 1.00 1.00 0.00 0.00 1.00 1.00 1.00 0.00 1.00 0.00 0.00 1.00 1.00 1.00 1.00 1.00 0.00 1.00 - 10.45 51.08 1997 0.00 1.00 1.00 1.00 1.00 1.00 1.00 1.00 0.00 0.00 1.00 1.00 1.00 0.00 1.00 0.00 0.00 1.00 1.00 1.00 1.00 1.00 0.00 1.00 - 10.45 51.08 1998 0.00 1.00 1.00 1.00 1.00 1.00 1.00 1.00 0.00 0.00 1.00 1.00 1.00 0.00 1.00 0.00 0.00 1.00 1.00 1.00 1.00 1.00 0.00 1.00 - 10.45 51.08 1999 0.00 1.00 1.00 1.00 1.00 1.00 1.00 1.00 0.00 0.00 1.00 1.00 1.00 0.00 1.00 0.00 0.00 1.00 1.00 1.00 1.00 1.00 0.00 1.00 - 10.45 51.08 2000 0.00 1.00 1.00 1.00 1.00 1.00 1.00 1.00 0.00 0.00 1.00 1.00 1.00 0.00 1.00 0.00 0.00 1.00 1.00 1.00 1.00 0.00 0.00 1.00 - 10.45 51.08 2001 0.00 1.00 1.00 1.00 1.00 1.00 1.00 1.00 0.00 0.00 1.00 1.00 1.00 0.00 1.00 0.00 0.00 1.00 1.00 1.00 1.00 0.00 0.00 1.00 - 10.45 51.08 2002 0.00 1.00 1.00 1.00 1.00 1.00 1.00 1.00 0.00 0.00 1.00 1.00 1.00 0.00 1.00 0.00 0.00 1.00 1.00 1.00 1.00 0.00 0.00 1.00 - 10.45 51.08 2003 0.00 1.00 1.00 1.00 1.00 1.00 1.00 1.00 0.00 0.00 1.00 1.00 1.00 0.00 1.00 0.00 0.00 1.00 1.00 1.00 1.00 0.00 0.00 1.00 - 10.45 51.08 2004 0.00 1.00 1.00 1.00 1.00 1.00 1.00 1.00 0.00 0.00 1.00 1.00 1.00 0.00 1.00 0.00 0.00 1.00 1.00 1.00 1.00 0.00 0.00 1.00 - 10.45 51.08 2005 0.00 1.00 1.00 1.00 1.00 1.00 1.00 1.00 0.00 0.00 1.00 1.00 1.00 0.00 1.00 0.00 0.00 1.00 1.00 1.00 1.00 0.00 0.00 1.00 - 10.45 51.08 2006 0.00 1.00 1.00 1.00 1.00 1.00 1.00 1.00 0.00 0.00 1.00 1.00 1.00 0.00 1.00 0.00 0.00 1.00 1.00 1.00 1.00 0.00 0.00 1.00 - 10.45 51.08 2007 0.00 1.00 1.00 1.00 1.00 1.00 1.00 1.00 0.00 0.00 1.00 1.00 1.00 0.00 1.00 0.00 0.00 1.00 1.00 1.00 1.00 0.00 0.00 1.00 - 10.45 51.08 2008 0.00 1.00 1.00 1.00 1.00 1.00 1.00 1.00 0.00 0.00 1.00 1.00 1.00 0.00 1.00 0.00 0.00 1.00 1.00 1.00 1.00 0.00 0.00 1.00 - 10.45 51.08 2009 0.00 0.00 1.00 1.00 1.00 1.00 1.00 1.00 0.00 0.00 1.00 1.00 1.00 0.00 1.00 0.00 0.00 1.00 1.00 1.00 1.00 0.00 0.00 1.00 - 10.45 51.08 2010 0.00 0.00 1.00 1.00 1.00 1.00 1.00 1.00 0.00 0.00 1.00 1.00 1.00 0.00 1.00 0.00 0.00 1.00 1.00 1.00 1.00 0.00 0.00 1.00 - 10.45 51.08 2011 0.00 0.00 1.00 1.00 1.00 1.00 1.00 1.00 0.00 0.00 0.00 1.00 1.00 0.00 1.00 0.00 0.00 1.00 1.00 1.00 1.00 0.00 0.00 1.00 - 10.45 51.08 2012 0.00 0.00 1.00 1.00 1.00 1.00 1.00 1.00 0.00 0.00 0.00 1.00 1.00 0.00 1.00 0.00 0.00 1.00 1.00 1.00 1.00 0.00 0.00 1.00 diff --git a/rLPJGUESS/inst/extdata/outputsForTests/run_patcharea/europe.ins b/rLPJGUESS/inst/extdata/outputsForTests/run_patcharea/europe.ins deleted file mode 100644 index 917713d..0000000 --- a/rLPJGUESS/inst/extdata/outputsForTests/run_patcharea/europe.ins +++ /dev/null @@ -1,1103 +0,0 @@ -!/////////////////////////////////////////////////////////////////////////////////////// -!// LPJ-GUESS INSTRUCTION SCRIPT FOR COHORT/INDIVIDUAL MODE -!// European Species -!// -!// LPJ-GUESS 3.0 -!// -!// Parameter differences with Thomas Hickler's paper: -!// -!// Hickler, T., Vohland, K., Feehan, J., Miller, P., Fronzek, S., Giesecke, T., Kuehn, I., Carter, T., Smith, B. & -!// Sykes, M. Projecting tree species-based climate-driven changes in European potential natural vegetation -!// with a generalized dynamic vegetation model. In press, Global Ecology & Biogeography. -!// -!// are commented with ! THdiff -!/////////////////////////////////////////////////////////////////////////////////////// - - -!/////////////////////////////////////////////////////////////////////////////////////// -! Output files -! - -! outputdirectory is mandatory. Should be "./" for parallel runs. -outputdirectory "/home/ramiro/Github/TestCode/LPJrunTest/runDirectory/outDirectory/" - -! Prefined yearly output -! These files may be outcommented if their output is not required. -file_cmass "cmass.out" -file_anpp "anpp.out" -file_agpp "agpp.out" -file_fpc "fpc.out" -file_aaet "aaet.out" -file_lai "lai.out" -file_cflux "cflux.out" -file_dens "dens.out" -file_runoff "runoff.out" -file_cpool "cpool.out" -file_clitter "clitter.out" -file_firert "firert.out" -file_aiso "aiso.out" -file_amon "amon.out" -file_speciesheights "speciesheight.out" - -file_nmass "nmass.out" -file_cton_leaf "cton_leaf.out" -file_ngases "ngases.out" -file_nsources "nsources.out" -file_npool "npool.out" -file_nlitter "nlitter.out" -file_nuptake "nuptake.out" -file_nflux "nflux.out" -file_vmaxnlim "vmaxnlim.out" - -! Monthly outputs -file_mnpp "mnpp.out" -file_mlai "mlai.out" -file_mrh "mrh.out" -file_mgpp "mgpp.out" -file_mra "mra.out" -file_mnee "mnee.out" -file_maet "maet.out" -file_mpet "mpet.out" -file_mevap "mevap.out" -file_mintercep "mintercep.out" -file_mrunoff "mrunoff.out" -file_mwcont_upper "mwcont_upper.out" -file_mwcont_lower "mwcont_lower.out" -file_miso "miso.out" -file_mmon "mmon.out" - -!/////////////////////////////////////////////////////////////////////////////////////// - - - -!/////////////////////////////////////////////////////////////////////////////////////// -!// RUN PARAMETERS AND OPTIONS -! - -! Settings recognised by Plib -! Run GUESS with -help option for list of keywords and their meanings - -title 'LPJ-GUESS cohort mode - European species' - -vegmode "cohort" ! "cohort", "individual" or "population" -nyear_spinup 500 ! number of years to spin up the simulation for -ifcalcsla 1 ! whether ctonto calculate SLA from leaf longevity - ! (PFT-specific value can be specified in this file instead) -ifcalccton 1 ! whether to calculate leaf C:N min from leaf longevity - ! (PFT-specific value can be specified in this file instead) -iffire 1 ! whether to implement fire (1) or not (0) -npatch 1 ! number of replicate patches to simulate -patcharea 500 ! patch area (m2) -estinterval 1 ! years between establishment events in cohort mode -ifdisturb 1 ! whether generic patch-destroying disturbances enabled -distinterval 100 ! average return time for generic patch-destroying disturbances - ! Hickler et al. (2011) used 200 -ifbgestab 1 ! whether background establishment enabled -ifsme 1 ! whether spatial mass effect enabled -ifstochestab 1 ! whether establishment stochastic -ifstochmort 1 ! whether mortality stochastic -ifcdebt 1 ! whether to allow vegetation C storage (1) or not (0) -wateruptake "rootdist" ! "wcont", "rootdist", "smart" or "speciesspecific", - ! see documentation for water_uptake() - -!/////////////////////////////////////////////////////////////////////////////// -! PROCESS SETTINGS SPECIFIC TO NITROGEN -!/////////////////////////////////////////////////////////////////////////////// - -ifcentury 1 ! whether to use CENTURY SOM dynamics (mandatory for N cycling) -ifnlim 0 ! whether plant growth limited by available N -freenyears 100 ! number of years to spin up without N limitation (needed to build up a N pool) -nfix_a 0.102 ! first term in N fixation eqn (Conservative 0.102, Central 0.234, Upper 0.367) -nfix_b 0.524 ! second term in N fixation eqn (Conservative 0.524, Central -0.172, Upper -0.754) -nrelocfrac 0.5 ! fraction of N retranslocated prior to leaf and root shedding - - -!/////////////////////////////////////////////////////////////////////////////// -! SERIALIZATION SETTINGS -!/////////////////////////////////////////////////////////////////////////////// -state_year 500 ! year to save/start state file (no setting = after spinup) -restart 0 ! wheter to start from a state file -save_state 0 ! wheter to save a state file -state_path "" ! directory to put state files in - - -ifsmoothgreffmort 1 ! whether to vary mort_greff smoothly with growth efficiency (1) - ! or to use the standard step-function (0) - ! greff_min values below calibrated for the smooth (1) option -ifdroughtlimitedestab 1 ! whether establishment is limited by growing season drought -ifrainonwetdaysonly 1 ! whether to rain on wet days only (1), or to rain a bit every day (0) -ifbvoc 0 ! whether to include BVOC calculations (1) or not (0) - -!!!!!!!!!!!! landcover parameters !!!!!!!!!!!!!! - -run_landcover 0 ! whether to use (and change) landcover fractions (1) or not (0) - -run_urban 0 ! whether to simulate barren land (1) or not (0) -run_crop 1 ! whether to simulate crop vegetation (1) or not (0) -run_forest 0 ! whether to simulate managed forest (1) or not (0) -run_pasture 0 ! whether to simulate pasture (1) or not (0) -run_natural 0 ! whether to simulate natural vegetation (1) or not (0) -run_peatland 1 ! whether to simulate peatland (1) or not (0) - -lcfrac_fixed 0 ! use landcover fractions (%) below (1) or read from input file (0) -lc_fixed_urban 0 ! URBAN -lc_fixed_cropland 50 ! CROPLAND -lc_fixed_pasture 0 ! PASTURE -lc_fixed_forest 0 ! FOREST -lc_fixed_natural 25 ! NATURAL -lc_fixed_peatland 25 ! PEATLAND -equal_landcover_area 0 ! divide gridcell into equal active landcover fractions - -!/////////////////////////////////////////////////////////////////////////////////////// - - -!/////////////////////////////////////////////////////////////////////////////////////// -!// PARAMETERS FOR PFTS -!// Run GUESS with -help option for list of keywords and their meanings - -group "common" ( - - ! Parameters common to all PFTs - - lambda_max 0.8 ! 0.8 - emax 5 ! 5 - reprfrac 0.1 ! 0.1 - wscal_min 0.35 ! 0.35 - drought_tolerance 1e-04 ! 0.0001 - ! default value - ensures that this has little effect even if - ! ifdroughtlimitedestab is turned on - landcover "natural" - turnover_harv_prod 1 ! 1 -) - - -group "tree" ( - - ! Parameters common to all trees - - common - lifeform "tree" - pathway "c3" - rootdist 0.6 0.4 - crownarea_max 40 ! 40 - turnover_root 0.7 ! 0.7 - ltor_max 1 ! 1 - k_allom2 40 ! 40 - k_allom3 0.67 ! 0.67 - k_rp 1.6 ! 1.6 - wooddens 200 ! 200 - cton_root 29 ! 29 - cton_sap 330 ! 330 - nuptoroot 0.0028 ! 0.0028 - km_volume 1.477e-06 ! 0.000001477 - kest_repr 200 ! 200 - kest_bg 0.1 ! 0.1 - kest_pres 1 ! 1 - litterme 0.3 ! 0.3 - harv_eff 0.7 ! 0.7 - res_outtake 0.75 ! 0.75 - harvest_slow_frac 0.33 ! 0.33 - turnover_harv_prod 0.04 ! 0.04 -) - -group "shrub" ( - common - lifeform "tree" - leafphysiognomy "broadleaf" - pathway "c3" - rootdist 0.6 0.4 - crownarea_max 10 ! 10 - turnover_root 0.7 ! 0.7 - ltor_max 1 ! 1 - k_allom1 100 ! 100 - k_allom2 5 ! 5 - k_allom3 0.67 ! 0.67 - k_rp 1.6 ! 1.6 - wooddens 250 ! 250 - cton_root 29 ! 29 - cton_sap 330 ! 330 - nuptoroot 0.0028 ! 0.0028 - km_volume 1.477e-06 ! 0.000001477 - fnstorage 0.3 ! 0.3 - kest_repr 200 ! 200 - kest_bg 0.1 ! 0.1 - kest_pres 1 ! 1 - litterme 0.3 ! 0.3 - longevity 100 ! 100 -) - -group "needle_leaved" ( - leafphysiognomy "needleleaf" - k_allom1 150 ! 150 - k_latosa 4000 ! 4000 - ga 0.14 ! 0.140 -) - -group "broad_leaved" ( - leafphysiognomy "broadleaf" - k_allom1 250 ! 250 - k_latosa 5000 ! 5000 - leaflong 0.5 ! 0.5 - turnover_leaf 1 ! 1 - ga 0.04 ! 0.040 -) - -group "grass" ( - - ! Parameters common to all grasses - - common - lifeform "grass" - leafphysiognomy "broadleaf" - ltor_max 0.5 ! 0.5 - cton_root 29 ! 29 - nuptoroot 0.00551 ! 0.00551 - km_volume 1.876e-06 ! 0.000001876 - fnstorage 0.3 ! 0.3 - respcoeff 1 ! 1.0 - litterme 0.2 ! 0.2 - ga 0.03 ! 0.030 -) - - -! greff_min values below calibrated for the smooth (ifsmoothgreffmort 1) option -! Many THdiff values here -group "shade_tolerant" ( - est_max 0.05 ! 0.05 - parff_min 350000 ! 350000 - alphar 3 ! 3.0 - greff_min 0.04 ! 0.04 - turnover_sap 0.05 ! 0.05 -) - - -! So far only trial values; not in global version -group "intermediate_shade_tolerant" ( - est_max 0.15 ! 0.15 - parff_min 2e+06 ! 2000000 - alphar 7 ! 7.0 - greff_min 0.06 ! 0.06 - turnover_sap 0.075 ! 0.075 -) - - -! From global version; values from orginal European version after "!" -group "shade_intolerant" ( - est_max 0.2 ! 0.2 - parff_min 2500000 ! 2500000 - alphar 10 ! 10.0 - greff_min 0.08 ! 0.08 - turnover_sap 0.1 ! 0.1 -) - - -group "boreal_tree" ( - respcoeff 1 ! 1.0 - pstemp_min -4 ! -4 - pstemp_low 10 ! 10 - pstemp_high 25 ! 25 - pstemp_max 38 ! 38 -) - -group "temperate_tree" ( - respcoeff 1 ! 1.0 - pstemp_min -2 ! -2 - pstemp_low 15 ! 15 - pstemp_high 25 ! 25 - pstemp_max 38 ! 38 -) - - -!/////////////////////////////////////////////////////////////////////////////////////// -! PFTs and species follow -! -! THdiff notes: -! 1. Thomas Hickler didn't give the values used for the tcmax_est and twmin_est parameters -! 2. rootdist is different for (z1 in brackets): Abi_alb (0.8), Bet_pen (0.8), Bet_pub (0.8), Car_bet (0.7), -! Cor_ave (0.7), Fag_syl (0.8), Fra_exc (0.8) - - -pft "Abi_alb" ( - - include 1 ! 1 - tree - shade_tolerant - temperate_tree - needle_leaved - phenology "evergreen" - !sla 9.3 ! 9.3 - gmin 0.3 ! 0.3 - fnstorage 0.05 ! 0.05 - leaflong 3 ! 3 - turnover_leaf 0.33 ! 0.33 - phengdd5ramp 0 ! 0 - tcmin_surv -2 ! -2 - tcmin_est -2 ! -2 - tcmax_est 2 ! 2 - twmin_est 6 ! 6 - gdd5min_est 1600 ! 1600 - k_chilla 0 ! 0 - k_chillb 100 ! 100 - k_chillk 0.05 ! 0.05 - fireresist 0.1 ! 0.1 - intc 0.06 ! 0.06 - longevity 350 ! 350 - drought_tolerance 0.35 ! 0.35 - eps_iso 0.05 ! 0.05 - seas_iso 0 ! 0 - eps_mon 1.8 ! 1.8 - storfrac_mon 0.5 ! 0.5 -) - - -pft "BES" ( - - ! boreal evergreen shrub - - include 1 ! 1 - shrub - boreal_tree - shade_intolerant - rootdist 0.8 0.2 - phenology "evergreen" - crownarea_max 3 ! 3 - k_allom1 20 ! 20 - k_allom2 5 ! 5 - k_latosa 500 ! 500 - !sla 9.3 ! 9.3 - gmin 0.3 ! 0.3 - leaflong 2 ! 2 - turnover_leaf 0.5 ! 0.5 - turnover_sap 0.05 ! 0.05 - phengdd5ramp 0 ! 0 - tcmin_surv -1000 ! -1000 - tcmin_est -1000 ! -1000 - tcmax_est -1 ! -1.0 - twmin_est -1000 ! -1000 - gdd5min_est 200 ! 200 - longevity 50 ! 50 - k_chilla 0 ! 0 - k_chillb 100 ! 100 - k_chillk 0.05 ! 0.05 - fireresist 0.1 ! 0.1 - intc 0.06 ! 0.06 - drought_tolerance 0.25 ! 0.25 - eps_iso 2 ! 2.0 - seas_iso 0 ! 0 - eps_mon 4 ! 4.0 - storfrac_mon 0.5 ! 0.5 - ga 0.04 ! 0.040 -) - - -pft "Bet_pen" ( - - include 1 ! 1 - tree - shade_intolerant - temperate_tree - broad_leaved - phenology "summergreen" - !sla 24.3 ! 24.3 - gmin 0.5 ! 0.5 - fnstorage 0.15 ! 0.15 - phengdd5ramp 200 ! 200 - tcmin_surv -30 ! -30 - tcmin_est -30 ! -30 - tcmax_est 7 ! 7 - twmin_est 5 ! 5 - gdd5min_est 700 ! 700 - k_chilla 0 ! 0 - k_chillb 350 ! 350 - k_chillk 0.05 ! 0.05 - fireresist 0.1 ! 0.1 - intc 0.02 ! 0.02 - longevity 200 ! 200 - drought_tolerance 0.42 ! 0.42 - eps_iso 0.2 ! 0.2 - seas_iso 1 ! 1 - eps_mon 6 ! 6. - storfrac_mon 0 ! 0. -) - - -pft "Bet_pub" ( - - include 1 ! 1 - tree - shade_intolerant - boreal_tree - broad_leaved - phenology "summergreen" - !sla 24.3 ! 24.3 - gmin 0.5 ! 0.5 - fnstorage 0.15 ! 0.15 - phengdd5ramp 200 ! 200 - tcmin_surv -30 ! -30 - tcmin_est -30 ! -30 - tcmax_est 3 ! 3 - twmin_est 5 ! 5 - gdd5min_est 350 ! 350 - k_chilla 0 ! 0 - k_chillb 350 ! 350 - k_chillk 0.05 ! 0.05 - fireresist 0.1 ! 0.1 - intc 0.02 ! 0.02 - longevity 200 ! 200 - drought_tolerance 0.5 ! 0.5 - eps_iso 0 ! 0. - seas_iso 1 ! 1 - eps_mon 1 ! 1.0 - storfrac_mon 0 ! 0. -) - - -pft "Car_bet" ( - - include 1 ! 1 - tree - intermediate_shade_tolerant - temperate_tree - broad_leaved - phenology "summergreen" - !sla 24.3 ! 24.3 - gmin 0.5 ! 0.5 - fnstorage 0.15 ! 0.15 - phengdd5ramp 200 ! 200 - tcmin_surv -8 ! -8 - tcmin_est -8 ! -8 - tcmax_est 5 ! 5 - twmin_est 5 ! 5 - gdd5min_est 1200 ! 1200 - k_chilla 0 ! 0 - k_chillb 600 ! 600 - k_chillk 0.05 ! 0.05 - fireresist 0.1 ! 0.1 - intc 0.02 ! 0.02 - longevity 350 ! 350 - drought_tolerance 0.33 ! 0.33 - eps_iso 0 ! 0. - seas_iso 1 ! 1 - eps_mon 0.08 ! 0.08 - storfrac_mon 0 ! 0. -) - - -pft "Cor_ave" ( - - include 1 ! 1 - tree - crownarea_max 15 - broad_leaved - intermediate_shade_tolerant - temperate_tree - phenology "summergreen" - crownarea_max 15 ! 15 - k_latosa 4000 ! 4000 - !sla 12 ! 12 - gmin 0.5 ! 0.5 - fnstorage 0.15 ! 0.15 - phengdd5ramp 200 ! 200 - tcmin_surv -11 ! -11 - tcmin_est -11 ! -11 - tcmax_est 7 ! 7 - twmin_est 5 ! 5 - gdd5min_est 800 ! 800 - k_chilla 0 ! 0 - k_chillb 350 ! 350 - k_chillk 0.05 ! 0.05 - fireresist 0.1 ! 0.1 - intc 0.02 ! 0.02 - longevity 100 ! 100 - drought_tolerance 0.3 ! 0.3 - eps_iso 0 ! 0. - seas_iso 1 ! 1 - eps_mon 0 ! 0. - storfrac_mon 0 ! 0. -) - - -pft "Fag_syl" ( - - include 1 ! 1 - tree - shade_tolerant - temperate_tree - broad_leaved - phenology "summergreen" - !sla 24.3 ! 24.3 - gmin 0.5 ! 0.5 - fnstorage 0.15 ! 0.15 - phengdd5ramp 200 ! 200 - tcmin_surv -4 ! -4.0 - tcmin_est -3.5 ! -3.5 - tcmax_est 6 ! 6 - twmin_est 5 ! 5 - gdd5min_est 1500 ! 1500 - k_chilla 0 ! 0 - k_chillb 600 ! 600 - k_chillk 0.05 ! 0.05 - fireresist 0.1 ! 0.1 - intc 0.02 ! 0.02 - longevity 500 ! 500 - drought_tolerance 0.3 ! 0.3 - eps_iso 0 ! 0. - seas_iso 1 ! 1 - eps_mon 10 ! 10. - storfrac_mon 0 ! 0. -) - - -pft "Fra_exc" ( - - include 1 ! 1 - tree - intermediate_shade_tolerant - temperate_tree - broad_leaved - phenology "summergreen" - !sla 24.3 ! 24.3 - gmin 0.5 ! 0.5 - fnstorage 0.15 ! 0.15 - phengdd5ramp 200 ! 200 - tcmin_surv -16 ! -16 - tcmin_est -16 ! -16 - tcmax_est 6 ! 6 - twmin_est 5 ! 5 - gdd5min_est 1100 ! 1100 - k_chilla 0 ! 0 - k_chillb 100 ! 100 - k_chillk 0.05 ! 0.05 - fireresist 0.1 ! 0.1 - intc 0.02 ! 0.02 - longevity 350 ! 350 - drought_tolerance 0.4 ! 0.4 - eps_iso 0 ! 0. - seas_iso 1 ! 1 - eps_mon 0 ! 0. - storfrac_mon 0 ! 0. -) - - -pft "Jun_oxy" ( - - ! Thomas Hickler's values - - include 1 ! 1 - tree ! THdiff: - shrub - shade_intolerant - temperate_tree - needle_leaved - rootdist 0.5 0.5 - phenology "evergreen" - k_latosa 1500 ! 1500 - crownarea_max 10 ! 10 - !sla 10 ! 10 - gmin 0.5 ! 0.5 - fnstorage 0.05 ! 0.05 - leaflong 1.5 ! 1.5 - turnover_leaf 0.6667 ! 0.6667 - phengdd5ramp 0 ! 0 - tcmin_surv 0 ! 0 - tcmin_est 1 ! 1 - tcmax_est 1000 ! 1000 - twmin_est -1000 ! -1000 - gdd5min_est 2200 ! 2200 - k_chilla 0 ! 0 - k_chillb 100 ! 100 - k_chillk 0.05 ! 0.05 - fireresist 0.4 ! 0.4 - intc 0.02 ! 0.02 - longevity 200 ! 200 - drought_tolerance 0.01 ! 0.01 - eps_iso 0 ! 0. - seas_iso 0 ! 0 - eps_mon 2 ! 2.0 - storfrac_mon 0.5 ! 0.5 -) - - -pft "MRS" ( - - ! Thomas Hickler's values - ! Mediterranean raingreen low shrub: - ! Cistus, Rosmarinus, Genista, Lavandula, Erica - - include 1 ! 1 - shrub ! THdiff: - has k_allom1 as 250 - shade_intolerant - temperate_tree - rootdist 0.9 0.1 - phenology "raingreen" - k_latosa 1500 ! 1500 - !sla 10 ! 10 - gmin 0.5 ! 0.5 - leaflong 0.5 ! 0.5 - turnover_leaf 1 ! 1 - phengdd5ramp 0 ! 0 - tcmin_surv 0 ! 0 - tcmin_est 1 ! 1 - tcmax_est 1000 ! 1000 - twmin_est -1000 ! -1000 - gdd5min_est 2200 ! 2200 - k_chilla 0 ! 0 - k_chillb 100 ! 100 - k_chillk 0.05 ! 0.05 - fireresist 0.3 ! 0.3 - intc 0.02 ! 0.02 - longevity 100 ! 100 - drought_tolerance 0.01 ! 0.01 - eps_iso 2 ! 2.0 - seas_iso 0 ! 0 - eps_mon 4 ! 4.0 - storfrac_mon 0.5 ! 0.5 - ga 0.04 ! 0.040 -) - - -pft "Pic_abi" ( - - include 1 ! 1 - tree - shade_tolerant - boreal_tree - needle_leaved - rootdist 0.8 0.2 - phenology "evergreen" - !sla 9.3 ! 9.3 - gmin 0.3 ! 0.3 - fnstorage 0.05 ! 0.05 - leaflong 3 ! 3 - turnover_leaf 0.33 ! 0.33 - phengdd5ramp 0 ! 0 - tcmin_surv -30 ! -30 - tcmin_est -30 ! -30 - tcmax_est -1.5 ! -1.5 - twmin_est 5 ! 5 - gdd5min_est 600 ! 600 - k_chilla 0 ! 0 - k_chillb 100 ! 100 - k_chillk 0.05 ! 0.05 - fireresist 0.1 ! 0.1 - intc 0.06 ! 0.06 - longevity 500 ! 500 - drought_tolerance 0.43 ! 0.43 - eps_iso 0.5 ! 0.5 - seas_iso 0 ! 0 - eps_mon 6 ! 6.0 - storfrac_mon 0.5 ! 0.5 -) - - -pft "Pic_sit" ( - - ! Bjarki's values - - include 1 ! 1 - tree - intermediate_shade_tolerant ! Savill's silviculture book - boreal_tree - needle_leaved - rootdist 0.8 0.2 ! ThomasH - phenology "evergreen" - k_latosa 4500 ! 4500 - !sla 9.3 ! 9.3 - gmin 0.3 ! 0.3 - fnstorage 0.05 ! 0.05 - leaflong 4 ! 4 - turnover_leaf 0.25 ! 0.25 - phengdd5ramp 0 ! 0 - tcmin_surv -18 ! -18 - tcmin_est -17 ! -17 - tcmax_est 5.5 ! 5.5 - twmin_est -1000 ! -1000 - gdd5min_est 450 ! 450 - k_chilla 0 ! 0 - k_chillb 100 ! 100 - k_chillk 0.05 ! 0.05 - fireresist 0.1 ! 0.1 - intc 0.06 ! 0.06 - longevity 700 ! 700 - drought_tolerance 0.5 ! 0.5 - eps_iso 0 ! 0. - seas_iso 0 ! 0 - eps_mon 0 ! 0. - storfrac_mon 0.5 ! 0.5 - - ! wooddens 200 - Should be less dens than P. abies (Savill) - ! turnover_sap 0.065 ! Bjarki 30% + abies! -) - - - -pft "Pin_syl" ( - - include 1 ! 1 - tree - intermediate_shade_tolerant - boreal_tree - needle_leaved - phenology "evergreen" - k_latosa 3000 ! 3000 - !sla 9.3 ! 9.3 - gmin 0.3 ! 0.3 - fnstorage 0.05 ! 0.05 - leaflong 2 ! 2 - turnover_leaf 0.5 ! 0.5 - phengdd5ramp 0 ! 0 - tcmin_surv -30 ! -30 - tcmin_est -30 ! -30 - tcmax_est -1 ! -1.0 - twmin_est 5 ! 5 - gdd5min_est 500 ! 500 - k_chilla 0 ! 0 - k_chillb 100 ! 100 - k_chillk 0.05 ! 0.05 - fireresist 0.2 ! 0.2 - intc 0.06 ! 0.06 - longevity 350 ! 350 - drought_tolerance 0.25 ! 0.25 - eps_iso 0 ! 0. - seas_iso 0 ! 0 - eps_mon 4 ! 4.0 - storfrac_mon 0.5 ! 0.5 -) - - -pft "Pin_hal" ( - - ! Thomas Hickler's values - - include 1 ! 1 - tree - shade_intolerant - temperate_tree - needle_leaved - phenology "evergreen" - k_latosa 3000 ! 3000 - !sla 9.3 ! 9.3 - gmin 0.3 ! 0.3 - fnstorage 0.05 ! 0.05 - leaflong 2 ! 2 - turnover_leaf 0.5 ! 0.5 - phengdd5ramp 0 ! 0 - tcmin_surv 3 ! 3 - tcmin_est 3 ! 3 - tcmax_est 9 ! 9 - twmin_est 21 ! 21 - gdd5min_est 3000 ! 3000 - k_chilla 0 ! 0 - k_chillb 100 ! 100 - k_chillk 0.05 ! 0.05 - fireresist 0.2 ! 0.2 - intc 0.06 ! 0.06 - longevity 350 ! 350 - drought_tolerance 0.05 ! 0.05 - eps_iso 0 ! 0. - seas_iso 0 ! 0 - eps_mon 10 ! 10.0 - storfrac_mon 0.5 ! 0.5 -) - - -pft "Pop_tre" ( - - ! Not included in Thomas Hickler's paper - - include 1 ! 1 - tree - shade_intolerant - temperate_tree - broad_leaved - rootdist 0.7 0.3 - phenology "summergreen" - !sla 24.3 ! 24.3 - gmin 0.5 ! 0.5 - fnstorage 0.15 ! 0.15 - phengdd5ramp 200 ! 200 - tcmin_surv -31 ! -31 - tcmin_est -30 ! -30 - tcmax_est 6 ! 6 - twmin_est -1000 ! -1000 - gdd5min_est 500 ! 500 - k_chilla 0 ! 0 - k_chillb 350 ! 350 - k_chillk 0.05 ! 0.05 - fireresist 0.2 ! 0.2 - intc 0.02 ! 0.02 - longevity 160 ! 160 - drought_tolerance 0.4 ! 0.4 - eps_iso 20 ! 20. - seas_iso 1 ! 1 - eps_mon 4 ! 4.0 - storfrac_mon 0 ! 0. -) - - -pft "Que_coc" ( - - ! Thomas Hickler's values - - include 1 ! 1 - shrub ! THdiff: - has k_allom1 as 250 - intermediate_shade_tolerant - temperate_tree - rootdist 0.5 0.5 - phenology "evergreen" - k_latosa 2500 ! 2500 - !sla 10 ! 10 - gmin 0.5 ! 0.5 - leaflong 1.5 ! 1.5 - turnover_leaf 0.6667 ! 0.6667 - phengdd5ramp 0 ! 0 - tcmin_surv 0 ! 0 - tcmin_est 0 ! 0 - tcmax_est 11 ! 11 - twmin_est 21 ! 21 - gdd5min_est 2200 ! 2200 - k_chilla 0 ! 0 - k_chillb 100 ! 100 - k_chillk 0.05 ! 0.05 - fireresist 0.3 ! 0.3 - intc 0.02 ! 0.02 - longevity 350 ! 350 - drought_tolerance 0.1 ! 0.1 - eps_iso 0.1 ! 0.1 - seas_iso 0 ! 0 - eps_mon 10 ! 10.0 - storfrac_mon 0 ! 0. - ga 0.04 ! 0.040 -) - - -pft "Que_ile" ( - - include 1 ! 1 - tree - intermediate_shade_tolerant - temperate_tree - broad_leaved - rootdist 0.5 0.5 - phenology "evergreen" - k_latosa 3000 ! 3000 - !sla 9.3 ! 9.3 - gmin 0.5 ! 0.5 - fnstorage 0.05 ! 0.05 - leaflong 2 ! 2 - turnover_leaf 0.5 ! 0.5 - phengdd5ramp 0 ! 0 - tcmin_surv 3 ! 3 - tcmin_est 3 ! 3 - tcmax_est 7 ! 7 - twmin_est 5 ! 5 - gdd5min_est 1800 ! 1800 - k_chilla 0 ! 0 - k_chillb 100 ! 100 - k_chillk 0.05 ! 0.05 - fireresist 0.3 ! 0.3 - intc 0.02 ! 0.02 - longevity 350 ! 350 - drought_tolerance 0.1 ! 0.1 - eps_iso 0.05 ! 0.05 - seas_iso 0 ! 0 - eps_mon 16 ! 16.0 - storfrac_mon 0 ! 0. -) - - -pft "Que_pub" ( - - ! Thomas Hickler's values - - include 1 ! 1 - tree - intermediate_shade_tolerant - temperate_tree - broad_leaved - phenology "summergreen" - !sla 24.3 ! 24.3 - gmin 0.5 ! 0.5 - fnstorage 0.15 ! 0.15 - phengdd5ramp 200 ! 200 - tcmin_surv -6 ! -6 - tcmin_est -5 ! -5 - tcmax_est 6 ! 6 - twmin_est -1000 ! -1000 - gdd5min_est 1900 ! 1900 - k_chilla 0 ! 0 - k_chillb 100 ! 100 - k_chillk 0.05 ! 0.05 - fireresist 0.2 ! 0.2 - intc 0.02 ! 0.02 - longevity 500 ! 500 - drought_tolerance 0.2 ! 0.2 - eps_iso 50 ! 50.0 - seas_iso 1 ! 1 - eps_mon 0 ! 0. - storfrac_mon 0 ! 0. -) - - -pft "Que_rob" ( - - include 1 ! 1 - tree - intermediate_shade_tolerant - temperate_tree - broad_leaved - phenology "summergreen" - !sla 24.3 ! 24.3 - gmin 0.5 ! 0.5 - fnstorage 0.15 ! 0.15 - phengdd5ramp 200 ! 200 - tcmin_surv -10 ! -10 - tcmin_est -9 ! -9 - tcmax_est 6 ! 6 - twmin_est 5 ! 5 - gdd5min_est 1100 ! 1100 - k_chilla 0 ! 0 - k_chillb 100 ! 100 - k_chillk 0.05 ! 0.05 - fireresist 0.2 ! 0.2 - intc 0.02 ! 0.02 - longevity 500 ! 500 - drought_tolerance 0.25 ! 0.25 - eps_iso 40 ! 40.0 - seas_iso 1 ! 1 - eps_mon 0 ! 0. - storfrac_mon 0 ! 0. -) - - -pft "Til_cor" ( - - include 1 ! 1 - tree - intermediate_shade_tolerant - temperate_tree - broad_leaved - rootdist 0.8 0.2 - phenology "summergreen" - !sla 24.3 ! 24.3 - gmin 0.5 ! 0.5 - fnstorage 0.15 ! 0.15 - phengdd5ramp 200 ! 200 - tcmin_surv -12 ! -12 - tcmin_est -11 ! -11 - tcmax_est 5 ! 5 - twmin_est 5 ! 5 - gdd5min_est 1100 ! 1100 - k_chilla 0 ! 0 - k_chillb 600 ! 600 - k_chillk 0.05 ! 0.05 - fireresist 0.1 ! 0.1 - intc 0.02 ! 0.02 - longevity 350 ! 350 - drought_tolerance 0.33 ! 0.33 - eps_iso 0 ! 0. - seas_iso 1 ! 1 - eps_mon 0 ! 0. - storfrac_mon 0 ! 0. -) - - -pft "Ulm_gla" ( - - ! Not included in Thomas Hickler's paper - - include 1 ! 1 - tree - intermediate_shade_tolerant - temperate_tree - broad_leaved - phenology "summergreen" - !sla 24.3 ! 24.3 - gmin 0.5 ! 0.5 - fnstorage 0.15 ! 0.15 - phengdd5ramp 200 ! 200 - tcmin_surv -10.5 ! -10.5 - tcmin_est -9.5 ! -9.5 - tcmax_est 6 ! 6 - twmin_est 5 ! 5 - gdd5min_est 850 ! 850 - k_chilla 0 ! 0 - k_chillb 100 ! 100 - k_chillk 0.05 ! 0.05 - fireresist 0.1 ! 0.1 - intc 0.02 ! 0.02 - longevity 350 ! 350 - drought_tolerance 0.4 ! 0.4 - eps_iso 0 ! 0. - seas_iso 1 ! 1 - eps_mon 0 ! 0. - storfrac_mon 0 ! 0. -) - - -pft "C3_gr" ( - - include 1 ! 1 - grass - pathway "c3" - rootdist 0.9 0.1 - phenology "any" - !sla 32.4 ! 32.4 - gmin 0.5 ! 0.5 - leaflong 0.5 ! 0.5 - turnover_leaf 1 ! 1 - turnover_root 0.7 ! 0.7 - phengdd5ramp 100 ! 100 - pstemp_min -5 ! -5 - pstemp_low 10 ! 10 - pstemp_high 30 ! 30 - pstemp_max 45 ! 45 - tcmin_surv -1000 ! -1000 - tcmin_est -1000 ! -1000 - tcmax_est 1000 ! 1000 - twmin_est -1000 ! -1000 - gdd5min_est 0 ! 0 - parff_min 2e+06 ! 2000000 - fireresist 0.5 ! 0.5 - intc 0.01 ! 0.01 - drought_tolerance 0.01 ! 0.01 - eps_iso 0 ! 0. - seas_iso 1 ! 1 - eps_mon 1 ! 1.0 - storfrac_mon 0.5 ! 0.5 -) - - -pft "C4_gr" ( - - include 1 ! 1 - grass - pathway "c4" - rootdist 0.9 0.1 - phenology "any" - gmin 0.5 ! 0.5 - leaflong 0.5 ! 0.5 - turnover_leaf 1 ! 1 - turnover_root 0.7 ! 0.7 - phengdd5ramp 100 ! 100 - pstemp_min 6 ! 6 - pstemp_low 20 ! 20 - pstemp_high 45 ! 45 - pstemp_max 55 ! 55 - tcmin_surv 15.5 ! 15.5 - tcmin_est 15.5 ! 15.5 - tcmax_est 1000 ! 1000 - twmin_est -1000 ! -1000 - gdd5min_est 0 ! 0 - parff_min 1e+06 ! 1000000 - fireresist 0.5 ! 0.5 - intc 0.01 ! 0.01 - drought_tolerance 0.01 ! 0.01 - eps_iso 0 ! 0. - seas_iso 1 ! 1 - eps_mon 1 ! 1.0 - storfrac_mon 0.5 ! 0.5 -) - - -! Reference: Savill's silviculture book: -! The Silviculture of Trees used in British Forestry, Peter S. Savill diff --git a/rLPJGUESS/inst/extdata/outputsForTests/run_patcharea/europe_cf.ins b/rLPJGUESS/inst/extdata/outputsForTests/run_patcharea/europe_cf.ins deleted file mode 100644 index b2b4f2f..0000000 --- a/rLPJGUESS/inst/extdata/outputsForTests/run_patcharea/europe_cf.ins +++ /dev/null @@ -1,50 +0,0 @@ -! -! Instruction file with European species to be used with the -! CF I/O module. -! -! Make sure to start LPJ-GUESS with -input cf when using this -! instruction file. -! - -import "/home/ramiro/Github/TestCode/LPJrunTest/runDirectory/europe.ins" - -coordinates_precision 2 - -!/////////////////////////////////////////////////////////////////////////////////////// -! Forcing Data & gridlists -! - -param "file_gridlist" (str "/home/ramiro/Github/TestCode/LPJrunTest/runDirectory/gridlist.txt") - -param "file_co2" (str "/home/ramiro/Github/TestCode/LPJrunTest/crudata/co2_1765-2500_RCP3.txt") -param "file_cru" (str "/home/ramiro/Github/TestCode/LPJrunTest/crudata/cru_1901_2006.bin") -param "file_cru_misc" (str "/home/ramiro/Github/TestCode/LPJrunTest/crudata/cru_1901_2006misc.bin") - -! N deposition (blank string to use constant pre-industrial level of 2 kgN/ha/year) -! type of N deposition time series: either "historic" (default), "rcp26", "rcp45","rcp60","rcp85" as ndep_timeseries in cfinput.cpp -! will work with "GlobalNitrogenDeposition.bin" no matter the value of ndep_timeseries, it will anyway get the right input file -! won´t work with any other RCP ndep file, no matter the value of ndep_timeseries - -param "file_ndep" (str "/home/ramiro/Github/TestCode/LPJrunTest/crudata/GlobalNitrogenDeposition.bin") - - -param "file_temp" (str "/home/ramiro/Github/TestCode/LPJrunTest/temp.nc") -param "variable_temp" (str "temp") - -param "file_prec" (str "/home/ramiro/Github/TestCode/LPJrunTest/prec.nc") -param "variable_prec" (str "prec") - -param "file_insol" (str "/home/ramiro/Github/TestCode/LPJrunTest/rad.nc") -param "variable_insol" (str "rad") - -! Wet days can only be used with monthly precipitation - param "file_wetdays" (str "") -! param "variable_wetdays" (str "_variable_wetdays_") - -! Min/max temp is required for BVOC, -! if BVOC is switched off these can be set to "" - param "file_min_temp" (str "") -! param "variable_min_temp" (str "_variable_min_temp_") - - param "file_max_temp" (str "") -! param "variable_max_temp" (str "_variable_max_temp_") diff --git a/rLPJGUESS/inst/extdata/outputsForTests/run_patcharea/gridlist.txt b/rLPJGUESS/inst/extdata/outputsForTests/run_patcharea/gridlist.txt deleted file mode 100644 index c8ed25d..0000000 --- a/rLPJGUESS/inst/extdata/outputsForTests/run_patcharea/gridlist.txt +++ /dev/null @@ -1 +0,0 @@ -0 Erfurt diff --git a/rLPJGUESS/inst/extdata/outputsForTests/run_patcharea/guess.log b/rLPJGUESS/inst/extdata/outputsForTests/run_patcharea/guess.log deleted file mode 100644 index 575587d..0000000 --- a/rLPJGUESS/inst/extdata/outputsForTests/run_patcharea/guess.log +++ /dev/null @@ -1,13 +0,0 @@ -[LPJ-GUESS Thu Jun 21 19:05:39 2018] - - - --------------------------------------------------- -LPJ-GUESS cohort mode - European species --------------------------------------------------- - -Commencing simulation for gridcell at (10.453,51.0792) -Description: Erfurt -Using soil code and Nitrogen deposition for (10.0,51.0) - -Finished diff --git a/rLPJGUESS/inst/extdata/outputsForTests/run_patcharea/outDirectory/aaet.out b/rLPJGUESS/inst/extdata/outputsForTests/run_patcharea/outDirectory/aaet.out deleted file mode 100644 index 8b0155a..0000000 --- a/rLPJGUESS/inst/extdata/outputsForTests/run_patcharea/outDirectory/aaet.out +++ /dev/null @@ -1,63 +0,0 @@ - Lon Lat Year Abi_alb BES Bet_pen Bet_pub Car_bet Cor_ave Fag_syl Fra_exc Jun_oxy MRS Pic_abi Pic_sit Pin_syl Pin_hal Pop_tre Que_coc Que_ile Que_pub Que_rob Til_cor Ulm_gla C3_gr C4_gr Total - 10.45 51.08 1951 0.00 0.00 0.00 0.00 0.00 0.00 189.23 1.93 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 191.16 - 10.45 51.08 1952 0.00 0.00 0.00 0.00 0.00 0.00 190.98 1.85 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 192.83 - 10.45 51.08 1953 0.00 0.00 0.00 0.00 0.00 0.00 208.29 0.95 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 209.23 - 10.45 51.08 1954 0.00 0.00 0.00 0.00 0.00 0.00 174.00 0.76 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 174.76 - 10.45 51.08 1955 0.00 0.00 0.00 0.00 0.00 0.00 166.82 0.68 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 167.50 - 10.45 51.08 1956 0.00 0.00 0.00 0.00 0.00 0.00 164.07 0.63 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 164.70 - 10.45 51.08 1957 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 - 10.45 51.08 1958 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 - 10.45 51.08 1959 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 - 10.45 51.08 1960 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 - 10.45 51.08 1961 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 - 10.45 51.08 1962 0.00 1.79 4.92 4.75 4.62 4.95 1.73 4.96 0.00 0.00 0.76 1.93 2.85 0.00 4.82 0.00 0.00 0.00 7.00 3.03 6.12 226.50 0.00 280.72 - 10.45 51.08 1963 0.00 2.77 9.59 9.76 9.05 9.15 3.56 9.65 0.00 0.00 1.27 3.21 4.56 0.00 9.15 0.00 0.00 0.00 13.26 6.25 11.86 238.12 0.00 341.22 - 10.45 51.08 1964 0.00 3.96 17.27 17.95 16.32 15.70 6.47 17.45 0.00 0.00 2.01 5.00 7.21 0.00 16.21 0.00 0.00 0.00 23.94 11.01 21.44 180.62 0.00 362.56 - 10.45 51.08 1965 0.00 4.31 22.12 23.49 20.99 19.35 8.37 22.46 0.00 0.00 2.38 5.87 8.19 0.00 20.95 0.00 0.00 0.00 30.79 14.48 27.59 0.00 0.00 231.33 - 10.45 51.08 1966 0.00 5.21 31.38 32.28 29.97 26.47 11.98 32.00 0.00 0.00 3.10 7.60 10.51 0.00 29.74 0.00 0.00 0.00 43.90 20.63 39.32 0.00 0.00 324.08 - 10.45 51.08 1967 0.00 5.29 37.36 39.59 35.82 30.16 14.37 38.36 0.00 0.00 3.33 8.02 11.23 0.00 35.42 0.00 0.00 0.00 52.68 23.60 47.14 0.00 0.00 382.37 - 10.45 51.08 1968 0.00 4.76 37.75 41.86 36.39 29.24 14.67 39.13 0.00 0.00 3.16 7.40 10.78 0.00 35.45 0.00 0.00 0.00 53.81 23.41 48.10 0.00 0.00 385.92 - 10.45 51.08 1969 0.00 4.29 39.14 45.42 38.06 28.87 15.43 40.85 0.00 0.00 2.86 6.64 10.08 0.00 36.08 0.00 0.00 0.00 56.26 23.44 50.22 0.00 0.00 397.66 - 10.45 51.08 1970 0.00 3.47 39.50 47.70 38.71 27.63 15.76 41.63 0.00 0.00 2.69 6.13 9.15 0.00 36.49 0.00 0.00 0.00 57.44 23.87 51.21 0.00 0.00 401.38 - 10.45 51.08 1971 0.00 2.62 35.16 48.05 37.72 23.91 15.45 40.76 0.00 0.00 2.30 5.02 8.18 0.00 31.98 0.00 0.00 0.00 56.33 19.55 50.15 0.00 0.00 377.18 - 10.45 51.08 1972 0.00 2.24 35.29 53.52 40.72 22.84 16.78 43.98 0.00 0.00 2.54 5.10 8.17 0.00 33.18 0.00 0.00 0.00 60.87 22.67 49.05 0.00 0.00 396.95 - 10.45 51.08 1973 0.00 0.95 30.11 48.27 35.06 17.25 14.57 37.96 0.00 0.00 1.95 3.69 6.49 0.00 23.96 0.00 0.00 0.00 50.43 18.47 42.35 0.00 0.00 331.52 - 10.45 51.08 1974 0.00 1.10 37.97 63.86 44.69 19.27 18.71 48.43 0.00 0.00 2.38 3.84 7.62 0.00 25.80 0.00 0.00 0.00 64.43 24.22 51.23 0.00 0.00 413.55 - 10.45 51.08 1975 0.00 0.76 31.59 65.36 46.80 18.40 19.77 51.24 0.00 0.00 2.19 3.05 7.27 0.00 21.38 0.00 0.00 0.00 68.27 23.34 54.21 0.00 0.00 413.63 - 10.45 51.08 1976 0.00 0.00 21.00 49.90 34.35 11.61 14.63 37.49 0.00 0.00 1.55 1.63 4.63 0.00 14.05 0.00 0.00 0.00 50.02 17.79 33.14 0.00 0.00 291.78 - 10.45 51.08 1977 0.00 0.00 26.36 66.32 43.33 11.64 18.85 47.89 0.00 0.00 1.46 1.36 5.23 0.00 15.26 0.00 0.00 0.00 64.06 20.09 42.32 0.00 0.00 364.19 - 10.45 51.08 1978 0.00 0.00 25.17 72.46 46.02 11.35 20.18 50.94 0.00 0.00 1.23 0.89 4.95 0.00 15.91 0.00 0.00 0.00 68.21 21.03 45.00 0.00 0.00 383.35 - 10.45 51.08 1979 0.00 0.00 25.29 77.53 46.99 10.56 20.84 51.60 0.00 0.00 1.01 0.45 4.67 0.00 13.59 0.00 0.00 0.00 69.81 21.07 45.99 0.00 0.00 389.39 - 10.45 51.08 1980 0.00 0.00 18.60 75.80 43.89 8.20 19.74 45.63 0.00 0.00 0.70 0.27 3.98 0.00 12.37 0.00 0.00 0.00 65.59 19.11 40.31 0.00 0.00 354.19 - 10.45 51.08 1981 0.00 0.00 18.90 94.45 52.31 7.95 23.80 54.45 0.00 0.00 0.00 0.00 4.01 0.00 12.07 0.00 0.00 0.00 78.27 20.44 47.99 0.00 0.00 414.64 - 10.45 51.08 1982 0.00 0.00 14.75 72.77 41.57 5.11 18.93 40.88 0.00 0.00 0.00 0.01 2.83 0.00 9.07 0.00 0.00 0.00 62.68 14.99 38.36 0.00 0.00 321.95 - 10.45 51.08 1983 0.00 0.00 17.48 93.15 50.97 4.80 23.75 46.78 0.00 0.00 0.00 0.03 2.96 0.00 8.59 0.00 0.00 0.00 76.86 18.34 46.78 0.00 0.00 390.49 - 10.45 51.08 1984 0.00 0.00 12.77 84.86 44.65 3.16 21.23 41.18 0.00 0.00 0.00 0.03 1.94 0.00 5.58 0.00 0.00 0.00 67.65 14.31 38.24 0.00 0.00 335.60 - 10.45 51.08 1985 0.00 0.00 12.11 102.79 51.90 3.17 25.15 48.03 0.00 0.00 0.00 0.02 1.72 0.00 6.21 0.00 0.00 0.00 75.47 16.00 44.60 0.00 0.00 387.19 - 10.45 51.08 1986 0.00 0.00 12.61 114.34 55.46 1.63 27.42 44.11 0.00 0.00 0.00 0.01 1.18 0.00 2.13 0.00 0.00 0.00 77.20 16.71 47.79 0.00 0.00 400.59 - 10.45 51.08 1987 0.00 0.00 11.53 110.83 48.52 1.27 26.03 41.38 0.00 0.00 0.00 0.01 0.00 0.00 0.00 0.00 0.00 0.00 72.41 15.51 41.38 0.00 0.00 368.88 - 10.45 51.08 1988 0.00 0.00 11.54 119.56 50.00 0.69 27.33 42.76 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 74.82 14.82 42.76 0.00 0.00 384.27 - 10.45 51.08 1989 0.00 0.00 10.28 116.10 43.20 0.00 26.01 36.52 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 66.39 11.83 39.84 0.00 0.00 350.17 - 10.45 51.08 1990 0.00 0.00 11.13 137.08 48.48 0.00 29.96 40.98 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 70.79 12.91 44.71 0.00 0.00 396.04 - 10.45 51.08 1991 0.00 0.00 8.91 118.81 37.08 0.00 25.35 34.23 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 59.12 10.61 37.34 0.00 0.00 331.45 - 10.45 51.08 1992 0.00 0.00 9.81 133.95 42.59 0.00 30.20 36.03 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 68.46 11.97 43.24 0.00 0.00 376.25 - 10.45 51.08 1993 0.00 0.00 8.26 152.37 46.36 0.00 33.95 35.45 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 74.84 10.17 47.27 0.00 0.00 408.67 - 10.45 51.08 1994 0.00 0.00 9.09 160.04 52.05 0.00 38.73 39.88 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 79.76 11.42 53.18 0.00 0.00 444.16 - 10.45 51.08 1995 0.00 0.00 8.53 158.81 49.67 0.00 37.61 38.40 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 72.52 8.56 51.19 0.00 0.00 425.29 - 10.45 51.08 1996 0.00 0.00 5.18 138.16 41.54 0.00 32.18 32.19 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 60.81 6.98 42.93 0.00 0.00 359.97 - 10.45 51.08 1997 0.00 0.00 5.93 170.88 48.99 0.00 38.94 38.15 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 72.06 5.84 50.87 0.00 0.00 431.67 - 10.45 51.08 1998 0.00 0.00 5.16 161.97 40.77 0.00 36.13 34.47 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 65.12 5.29 45.96 0.00 0.00 394.87 - 10.45 51.08 1999 0.00 0.00 5.71 196.28 46.80 0.00 42.79 39.86 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 70.86 5.84 53.15 0.00 0.00 461.29 - 10.45 51.08 2000 0.00 0.00 4.99 185.39 42.18 0.00 39.63 36.06 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 64.10 4.96 48.08 0.00 0.00 425.39 - 10.45 51.08 2001 0.00 0.00 3.09 191.50 41.07 0.00 40.16 35.35 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 62.85 4.84 47.14 0.00 0.00 426.02 - 10.45 51.08 2002 0.00 0.00 2.86 193.65 36.02 0.00 39.77 34.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 56.67 4.51 45.33 0.00 0.00 412.81 - 10.45 51.08 2003 0.00 0.00 1.36 203.40 35.68 0.00 40.78 34.01 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 56.69 4.13 41.57 0.00 0.00 417.63 - 10.45 51.08 2004 0.00 0.00 1.17 195.75 29.36 0.00 38.53 30.80 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 51.33 3.79 37.65 0.00 0.00 388.39 - 10.45 51.08 2005 0.00 0.00 1.20 221.20 28.28 0.00 42.70 33.18 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 47.93 3.87 40.56 0.00 0.00 418.93 - 10.45 51.08 2006 0.00 0.00 0.00 242.50 29.27 0.00 45.93 34.48 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 49.81 4.11 42.15 0.00 0.00 448.26 - 10.45 51.08 2007 0.00 0.00 0.00 251.74 28.32 0.00 46.07 34.62 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 50.01 3.65 38.47 0.00 0.00 452.88 - 10.45 51.08 2008 0.00 0.00 0.00 231.75 25.17 0.00 42.46 30.43 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 43.96 3.03 33.81 0.00 0.00 410.60 - 10.45 51.08 2009 0.00 0.00 0.00 226.57 19.92 0.00 45.22 27.74 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 45.08 3.09 34.68 0.00 0.00 402.30 - 10.45 51.08 2010 0.00 0.00 0.00 226.03 19.19 0.00 44.89 26.88 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 40.32 2.86 33.60 0.00 0.00 393.76 - 10.45 51.08 2011 0.00 0.00 0.00 247.58 20.51 0.00 49.48 25.22 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 39.63 2.89 36.03 0.00 0.00 421.35 - 10.45 51.08 2012 0.00 0.00 0.00 245.15 19.92 0.00 49.45 24.66 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 38.75 1.89 35.23 0.00 0.00 415.05 diff --git a/rLPJGUESS/inst/extdata/outputsForTests/run_patcharea/outDirectory/agpp.out b/rLPJGUESS/inst/extdata/outputsForTests/run_patcharea/outDirectory/agpp.out deleted file mode 100644 index 7e9638e..0000000 --- a/rLPJGUESS/inst/extdata/outputsForTests/run_patcharea/outDirectory/agpp.out +++ /dev/null @@ -1,63 +0,0 @@ - Lon Lat Year Abi_alb BES Bet_pen Bet_pub Car_bet Cor_ave Fag_syl Fra_exc Jun_oxy MRS Pic_abi Pic_sit Pin_syl Pin_hal Pop_tre Que_coc Que_ile Que_pub Que_rob Til_cor Ulm_gla C3_gr C4_gr Total - 10.45 51.08 1951 0.000 0.000 0.000 0.000 0.000 0.000 1.000 0.002 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 1.002 - 10.45 51.08 1952 0.000 0.000 0.000 0.000 0.000 0.000 1.009 0.001 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 1.010 - 10.45 51.08 1953 0.000 0.000 0.000 0.000 0.000 0.000 1.078 0.001 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 1.079 - 10.45 51.08 1954 0.000 0.000 0.000 0.000 0.000 0.000 0.947 0.001 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.948 - 10.45 51.08 1955 0.000 0.000 0.000 0.000 0.000 0.000 0.904 0.001 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.904 - 10.45 51.08 1956 0.000 0.000 0.000 0.000 0.000 0.000 0.921 0.001 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.921 - 10.45 51.08 1957 0.000 0.000 0.000 0.000 0.000 0.000 0.993 0.001 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.994 - 10.45 51.08 1958 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1959 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1960 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1961 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1962 0.000 0.018 0.028 0.031 0.027 0.025 0.010 0.028 0.000 0.000 0.006 0.017 0.021 0.000 0.028 0.000 0.000 0.000 0.040 0.017 0.035 0.426 0.000 0.758 - 10.45 51.08 1963 0.000 0.024 0.052 0.059 0.050 0.043 0.020 0.053 0.000 0.000 0.010 0.026 0.030 0.000 0.050 0.000 0.000 0.000 0.073 0.034 0.065 0.288 0.000 0.875 - 10.45 51.08 1964 0.000 0.024 0.078 0.091 0.075 0.060 0.030 0.080 0.000 0.000 0.012 0.031 0.036 0.000 0.073 0.000 0.000 0.000 0.110 0.049 0.098 0.118 0.000 0.964 - 10.45 51.08 1965 0.000 0.023 0.090 0.114 0.087 0.065 0.035 0.093 0.000 0.000 0.013 0.034 0.038 0.000 0.085 0.000 0.000 0.000 0.129 0.058 0.115 0.017 0.000 0.996 - 10.45 51.08 1966 0.000 0.018 0.110 0.136 0.108 0.073 0.044 0.116 0.000 0.000 0.013 0.031 0.037 0.000 0.104 0.000 0.000 0.000 0.161 0.071 0.143 0.000 0.000 1.165 - 10.45 51.08 1967 0.000 0.017 0.115 0.157 0.114 0.070 0.047 0.123 0.000 0.000 0.013 0.030 0.037 0.000 0.108 0.000 0.000 0.000 0.170 0.072 0.151 0.000 0.000 1.224 - 10.45 51.08 1968 0.000 0.012 0.115 0.170 0.116 0.063 0.048 0.125 0.000 0.000 0.011 0.022 0.030 0.000 0.107 0.000 0.000 0.000 0.174 0.071 0.154 0.000 0.000 1.219 - 10.45 51.08 1969 0.000 0.009 0.113 0.177 0.116 0.056 0.049 0.125 0.000 0.000 0.009 0.017 0.025 0.000 0.102 0.000 0.000 0.000 0.175 0.068 0.155 0.000 0.000 1.194 - 10.45 51.08 1970 0.000 0.007 0.110 0.185 0.115 0.049 0.050 0.125 0.000 0.000 0.008 0.015 0.022 0.000 0.100 0.000 0.000 0.000 0.175 0.067 0.154 0.000 0.000 1.183 - 10.45 51.08 1971 0.000 0.006 0.094 0.180 0.106 0.038 0.046 0.116 0.000 0.000 0.007 0.013 0.020 0.000 0.082 0.000 0.000 0.000 0.162 0.051 0.143 0.000 0.000 1.066 - 10.45 51.08 1972 0.000 0.005 0.096 0.226 0.119 0.038 0.054 0.131 0.000 0.000 0.007 0.011 0.020 0.000 0.086 0.000 0.000 0.000 0.184 0.060 0.147 0.000 0.000 1.184 - 10.45 51.08 1973 0.000 0.002 0.078 0.194 0.099 0.026 0.045 0.108 0.000 0.000 0.006 0.009 0.017 0.000 0.059 0.000 0.000 0.000 0.145 0.047 0.121 0.000 0.000 0.955 - 10.45 51.08 1974 0.000 0.002 0.098 0.273 0.127 0.030 0.059 0.140 0.000 0.000 0.006 0.007 0.017 0.000 0.063 0.000 0.000 0.000 0.187 0.061 0.148 0.000 0.000 1.216 - 10.45 51.08 1975 0.000 0.001 0.075 0.260 0.123 0.026 0.058 0.137 0.000 0.000 0.005 0.005 0.015 0.000 0.048 0.000 0.000 0.000 0.184 0.056 0.145 0.000 0.000 1.139 - 10.45 51.08 1976 0.000 0.000 0.050 0.209 0.093 0.015 0.044 0.103 0.000 0.000 0.004 0.003 0.010 0.000 0.031 0.000 0.000 0.000 0.138 0.042 0.091 0.000 0.000 0.832 - 10.45 51.08 1977 0.000 0.000 0.067 0.305 0.126 0.018 0.062 0.140 0.000 0.000 0.003 0.002 0.011 0.000 0.037 0.000 0.000 0.000 0.188 0.052 0.124 0.000 0.000 1.134 - 10.45 51.08 1978 0.000 0.000 0.058 0.327 0.122 0.015 0.062 0.138 0.000 0.000 0.002 0.001 0.010 0.000 0.035 0.000 0.000 0.000 0.186 0.049 0.122 0.000 0.000 1.126 - 10.45 51.08 1979 0.000 0.000 0.054 0.335 0.118 0.012 0.062 0.135 0.000 0.000 0.002 0.001 0.009 0.000 0.028 0.000 0.000 0.000 0.181 0.046 0.119 0.000 0.000 1.101 - 10.45 51.08 1980 0.000 0.000 0.038 0.332 0.109 0.009 0.059 0.118 0.000 0.000 0.001 0.000 0.008 0.000 0.024 0.000 0.000 0.000 0.169 0.041 0.103 0.000 0.000 1.013 - 10.45 51.08 1981 0.000 0.000 0.038 0.423 0.128 0.009 0.071 0.138 0.000 0.000 0.001 0.000 0.006 0.000 0.023 0.000 0.000 0.000 0.198 0.042 0.121 0.000 0.000 1.199 - 10.45 51.08 1982 0.000 0.000 0.027 0.295 0.094 0.005 0.054 0.095 0.000 0.000 0.000 0.000 0.006 0.000 0.015 0.000 0.000 0.000 0.146 0.028 0.089 0.000 0.000 0.856 - 10.45 51.08 1983 0.000 0.000 0.033 0.389 0.119 0.005 0.071 0.114 0.000 0.000 0.000 0.000 0.004 0.000 0.016 0.000 0.000 0.000 0.188 0.036 0.115 0.000 0.000 1.091 - 10.45 51.08 1984 0.000 0.000 0.026 0.399 0.112 0.004 0.068 0.107 0.000 0.000 0.000 0.000 0.004 0.000 0.010 0.000 0.000 0.000 0.176 0.029 0.099 0.000 0.000 1.033 - 10.45 51.08 1985 0.000 0.000 0.022 0.438 0.117 0.003 0.074 0.113 0.000 0.000 0.000 0.000 0.002 0.000 0.010 0.000 0.000 0.000 0.177 0.029 0.105 0.000 0.000 1.090 - 10.45 51.08 1986 0.000 0.000 0.023 0.501 0.126 0.002 0.082 0.104 0.000 0.000 0.000 0.000 0.002 0.000 0.004 0.000 0.000 0.000 0.183 0.030 0.113 0.000 0.000 1.169 - 10.45 51.08 1987 0.000 0.000 0.021 0.536 0.113 0.001 0.081 0.100 0.000 0.000 0.000 0.000 0.001 0.000 0.003 0.000 0.000 0.000 0.175 0.027 0.100 0.000 0.000 1.158 - 10.45 51.08 1988 0.000 0.000 0.018 0.505 0.102 0.001 0.077 0.092 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.161 0.024 0.092 0.000 0.000 1.072 - 10.45 51.08 1989 0.000 0.000 0.016 0.520 0.091 0.000 0.075 0.081 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.147 0.019 0.088 0.000 0.000 1.039 - 10.45 51.08 1990 0.000 0.000 0.017 0.627 0.099 0.000 0.087 0.091 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.157 0.021 0.099 0.000 0.000 1.199 - 10.45 51.08 1991 0.000 0.000 0.013 0.538 0.069 0.000 0.068 0.068 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.117 0.015 0.074 0.000 0.000 0.962 - 10.45 51.08 1992 0.000 0.000 0.014 0.556 0.079 0.000 0.083 0.071 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.135 0.017 0.085 0.000 0.000 1.041 - 10.45 51.08 1993 0.000 0.000 0.013 0.669 0.092 0.000 0.097 0.074 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.157 0.016 0.099 0.000 0.000 1.216 - 10.45 51.08 1994 0.000 0.000 0.013 0.689 0.096 0.000 0.104 0.079 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.157 0.016 0.105 0.000 0.000 1.259 - 10.45 51.08 1995 0.000 0.000 0.012 0.700 0.090 0.000 0.102 0.075 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.141 0.011 0.100 0.000 0.000 1.230 - 10.45 51.08 1996 0.000 0.000 0.007 0.671 0.079 0.000 0.093 0.065 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.124 0.010 0.087 0.000 0.000 1.136 - 10.45 51.08 1997 0.000 0.000 0.007 0.758 0.082 0.000 0.101 0.068 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.129 0.007 0.091 0.000 0.000 1.245 - 10.45 51.08 1998 0.000 0.000 0.007 0.754 0.070 0.000 0.098 0.064 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.121 0.007 0.085 0.000 0.000 1.205 - 10.45 51.08 1999 0.000 0.000 0.007 0.853 0.075 0.000 0.109 0.069 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.122 0.007 0.091 0.000 0.000 1.333 - 10.45 51.08 2000 0.000 0.000 0.006 0.826 0.066 0.000 0.103 0.060 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.107 0.006 0.081 0.000 0.000 1.254 - 10.45 51.08 2001 0.000 0.000 0.004 0.844 0.063 0.000 0.101 0.059 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.104 0.005 0.078 0.000 0.000 1.258 - 10.45 51.08 2002 0.000 0.000 0.003 0.869 0.055 0.000 0.099 0.055 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.092 0.005 0.074 0.000 0.000 1.252 - 10.45 51.08 2003 0.000 0.000 0.001 0.813 0.049 0.000 0.093 0.050 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.083 0.004 0.061 0.000 0.000 1.153 - 10.45 51.08 2004 0.000 0.000 0.001 0.871 0.045 0.000 0.097 0.050 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.083 0.004 0.061 0.000 0.000 1.212 - 10.45 51.08 2005 0.000 0.000 0.001 0.952 0.040 0.000 0.102 0.050 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.072 0.004 0.061 0.000 0.000 1.282 - 10.45 51.08 2006 0.000 0.000 0.001 0.977 0.040 0.000 0.107 0.051 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.073 0.004 0.062 0.000 0.000 1.314 - 10.45 51.08 2007 0.000 0.000 0.000 1.049 0.038 0.000 0.106 0.052 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.075 0.004 0.057 0.000 0.000 1.380 - 10.45 51.08 2008 0.000 0.000 0.000 0.944 0.032 0.000 0.094 0.042 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.060 0.003 0.046 0.000 0.000 1.222 - 10.45 51.08 2009 0.000 0.000 0.000 0.958 0.028 0.000 0.109 0.042 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.068 0.003 0.053 0.000 0.000 1.262 - 10.45 51.08 2010 0.000 0.000 0.000 0.968 0.026 0.000 0.105 0.040 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.059 0.003 0.049 0.000 0.000 1.250 - 10.45 51.08 2011 0.000 0.000 0.000 1.054 0.027 0.000 0.115 0.036 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.057 0.003 0.052 0.000 0.000 1.345 - 10.45 51.08 2012 0.000 0.000 0.000 1.045 0.024 0.000 0.108 0.033 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.052 0.002 0.047 0.000 0.000 1.310 diff --git a/rLPJGUESS/inst/extdata/outputsForTests/run_patcharea/outDirectory/aiso.out b/rLPJGUESS/inst/extdata/outputsForTests/run_patcharea/outDirectory/aiso.out deleted file mode 100644 index 7d6e828..0000000 --- a/rLPJGUESS/inst/extdata/outputsForTests/run_patcharea/outDirectory/aiso.out +++ /dev/null @@ -1,63 +0,0 @@ - Lon Lat Year Abi_alb BES Bet_pen Bet_pub Car_bet Cor_ave Fag_syl Fra_exc Jun_oxy MRS Pic_abi Pic_sit Pin_syl Pin_hal Pop_tre Que_coc Que_ile Que_pub Que_rob Til_cor Ulm_gla C3_gr C4_gr Total - 10.45 51.08 1951 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1952 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1953 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1954 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1955 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1956 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1957 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1958 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1959 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1960 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1961 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1962 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1963 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1964 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1965 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1966 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1967 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1968 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1969 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1970 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1971 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1972 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1973 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1974 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1975 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1976 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1977 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1978 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1979 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1980 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1981 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1982 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1983 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1984 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1985 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1986 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1987 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1988 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1989 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1990 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1991 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1992 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1993 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1994 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1995 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1996 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1997 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1998 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1999 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 2000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 2001 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 2002 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 2003 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 2004 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 2005 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 2006 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 2007 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 2008 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 2009 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 2010 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 2011 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 2012 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 diff --git a/rLPJGUESS/inst/extdata/outputsForTests/run_patcharea/outDirectory/amon.out b/rLPJGUESS/inst/extdata/outputsForTests/run_patcharea/outDirectory/amon.out deleted file mode 100644 index 7d6e828..0000000 --- a/rLPJGUESS/inst/extdata/outputsForTests/run_patcharea/outDirectory/amon.out +++ /dev/null @@ -1,63 +0,0 @@ - Lon Lat Year Abi_alb BES Bet_pen Bet_pub Car_bet Cor_ave Fag_syl Fra_exc Jun_oxy MRS Pic_abi Pic_sit Pin_syl Pin_hal Pop_tre Que_coc Que_ile Que_pub Que_rob Til_cor Ulm_gla C3_gr C4_gr Total - 10.45 51.08 1951 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1952 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1953 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1954 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1955 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1956 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1957 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1958 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1959 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1960 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1961 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1962 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1963 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1964 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1965 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1966 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1967 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1968 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1969 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1970 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1971 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1972 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1973 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1974 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1975 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1976 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1977 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1978 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1979 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1980 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1981 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1982 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1983 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1984 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1985 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1986 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1987 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1988 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1989 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1990 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1991 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1992 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1993 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1994 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1995 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1996 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1997 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1998 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1999 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 2000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 2001 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 2002 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 2003 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 2004 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 2005 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 2006 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 2007 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 2008 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 2009 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 2010 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 2011 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 2012 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 diff --git a/rLPJGUESS/inst/extdata/outputsForTests/run_patcharea/outDirectory/anpp.out b/rLPJGUESS/inst/extdata/outputsForTests/run_patcharea/outDirectory/anpp.out deleted file mode 100644 index 8b7492a..0000000 --- a/rLPJGUESS/inst/extdata/outputsForTests/run_patcharea/outDirectory/anpp.out +++ /dev/null @@ -1,63 +0,0 @@ - Lon Lat Year Abi_alb BES Bet_pen Bet_pub Car_bet Cor_ave Fag_syl Fra_exc Jun_oxy MRS Pic_abi Pic_sit Pin_syl Pin_hal Pop_tre Que_coc Que_ile Que_pub Que_rob Til_cor Ulm_gla C3_gr C4_gr Total - 10.45 51.08 1951 0.000 0.000 0.000 0.000 0.000 0.000 0.401 0.001 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.401 - 10.45 51.08 1952 0.000 0.000 0.000 0.000 0.000 0.000 0.414 0.001 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.414 - 10.45 51.08 1953 0.000 0.000 0.000 0.000 0.000 0.000 0.435 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.435 - 10.45 51.08 1954 0.000 0.000 0.000 0.000 0.000 0.000 0.370 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.370 - 10.45 51.08 1955 0.000 0.000 0.000 0.000 0.000 0.000 0.357 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.358 - 10.45 51.08 1956 0.000 0.000 0.000 0.000 0.000 0.000 0.381 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.381 - 10.45 51.08 1957 0.000 0.000 0.000 0.000 0.000 0.000 0.402 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.402 - 10.45 51.08 1958 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1959 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1960 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1961 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1962 0.000 0.012 0.020 0.022 0.019 0.018 0.007 0.020 0.000 0.000 0.004 0.011 0.014 0.000 0.019 0.000 0.000 0.000 0.028 0.012 0.025 0.214 0.000 0.444 - 10.45 51.08 1963 0.000 0.015 0.036 0.041 0.034 0.030 0.014 0.037 0.000 0.000 0.006 0.016 0.019 0.000 0.034 0.000 0.000 0.000 0.051 0.023 0.045 0.104 0.000 0.505 - 10.45 51.08 1964 0.000 0.014 0.052 0.061 0.050 0.040 0.020 0.054 0.000 0.000 0.007 0.018 0.022 0.000 0.049 0.000 0.000 0.000 0.074 0.033 0.066 0.026 0.000 0.588 - 10.45 51.08 1965 0.000 0.013 0.059 0.076 0.057 0.042 0.023 0.061 0.000 0.000 0.008 0.020 0.023 0.000 0.056 0.000 0.000 0.000 0.085 0.038 0.075 -0.011 0.000 0.625 - 10.45 51.08 1966 0.000 0.009 0.070 0.088 0.069 0.045 0.028 0.074 0.000 0.000 0.007 0.016 0.020 0.000 0.067 0.000 0.000 0.000 0.102 0.045 0.091 0.000 0.000 0.730 - 10.45 51.08 1967 0.000 0.007 0.069 0.098 0.069 0.040 0.028 0.075 0.000 0.000 0.007 0.015 0.020 0.000 0.065 0.000 0.000 0.000 0.103 0.043 0.092 0.000 0.000 0.731 - 10.45 51.08 1968 0.000 0.004 0.068 0.105 0.069 0.035 0.029 0.074 0.000 0.000 0.005 0.009 0.014 0.000 0.063 0.000 0.000 0.000 0.103 0.042 0.091 0.000 0.000 0.710 - 10.45 51.08 1969 0.000 0.002 0.065 0.105 0.066 0.029 0.028 0.072 0.000 0.000 0.003 0.006 0.011 0.000 0.058 0.000 0.000 0.000 0.100 0.038 0.089 0.000 0.000 0.673 - 10.45 51.08 1970 0.000 0.002 0.062 0.110 0.065 0.024 0.028 0.071 0.000 0.000 0.003 0.005 0.009 0.000 0.056 0.000 0.000 0.000 0.099 0.037 0.087 0.000 0.000 0.659 - 10.45 51.08 1971 0.000 0.002 0.049 0.099 0.055 0.016 0.024 0.061 0.000 0.000 0.003 0.005 0.008 0.000 0.042 0.000 0.000 0.000 0.085 0.025 0.075 0.000 0.000 0.548 - 10.45 51.08 1972 0.000 0.002 0.054 0.137 0.068 0.019 0.031 0.075 0.000 0.000 0.003 0.005 0.010 0.000 0.049 0.000 0.000 0.000 0.105 0.034 0.084 0.000 0.000 0.674 - 10.45 51.08 1973 0.000 0.001 0.039 0.105 0.049 0.011 0.022 0.054 0.000 0.000 0.002 0.003 0.007 0.000 0.029 0.000 0.000 0.000 0.073 0.023 0.061 0.000 0.000 0.479 - 10.45 51.08 1974 0.000 0.001 0.056 0.165 0.072 0.015 0.034 0.080 0.000 0.000 0.003 0.003 0.008 0.000 0.036 0.000 0.000 0.000 0.107 0.035 0.084 0.000 0.000 0.697 - 10.45 51.08 1975 0.000 0.000 0.041 0.150 0.066 0.012 0.031 0.075 0.000 0.000 0.002 0.002 0.007 0.000 0.026 0.000 0.000 0.000 0.100 0.030 0.079 0.000 0.000 0.621 - 10.45 51.08 1976 0.000 0.000 0.022 0.103 0.040 0.004 0.019 0.045 0.000 0.000 0.001 0.001 0.003 0.000 0.013 0.000 0.000 0.000 0.061 0.018 0.040 0.000 0.000 0.371 - 10.45 51.08 1977 0.000 0.000 0.037 0.181 0.070 0.009 0.035 0.078 0.000 0.000 0.001 0.001 0.005 0.000 0.020 0.000 0.000 0.000 0.106 0.029 0.069 0.000 0.000 0.642 - 10.45 51.08 1978 0.000 0.000 0.032 0.197 0.069 0.007 0.035 0.078 0.000 0.000 0.001 0.001 0.005 0.000 0.019 0.000 0.000 0.000 0.105 0.027 0.069 0.000 0.000 0.646 - 10.45 51.08 1979 0.000 0.000 0.029 0.195 0.064 0.006 0.034 0.074 0.000 0.000 0.001 0.000 0.004 0.000 0.015 0.000 0.000 0.000 0.099 0.025 0.065 0.000 0.000 0.612 - 10.45 51.08 1980 0.000 0.000 0.020 0.189 0.057 0.004 0.032 0.062 0.000 0.000 0.001 0.000 0.004 0.000 0.013 0.000 0.000 0.000 0.090 0.021 0.055 0.000 0.000 0.546 - 10.45 51.08 1981 0.000 0.000 0.021 0.249 0.070 0.004 0.039 0.076 0.000 0.000 0.000 0.000 0.002 0.000 0.012 0.000 0.000 0.000 0.109 0.023 0.066 0.000 0.000 0.672 - 10.45 51.08 1982 0.000 0.000 0.010 0.136 0.038 0.001 0.022 0.039 0.000 0.000 0.000 0.000 0.002 0.000 0.006 0.000 0.000 0.000 0.060 0.010 0.036 0.000 0.000 0.362 - 10.45 51.08 1983 0.000 0.000 0.017 0.213 0.061 0.002 0.037 0.059 0.000 0.000 0.000 0.000 0.002 0.000 0.008 0.000 0.000 0.000 0.097 0.018 0.059 0.000 0.000 0.570 - 10.45 51.08 1984 0.000 0.000 0.014 0.229 0.060 0.002 0.037 0.058 0.000 0.000 0.000 0.000 0.002 0.000 0.006 0.000 0.000 0.000 0.095 0.016 0.054 0.000 0.000 0.571 - 10.45 51.08 1985 0.000 0.000 0.011 0.249 0.063 0.001 0.040 0.061 0.000 0.000 0.000 0.000 0.001 0.000 0.005 0.000 0.000 0.000 0.095 0.015 0.056 0.000 0.000 0.598 - 10.45 51.08 1986 0.000 0.000 0.012 0.288 0.068 0.001 0.045 0.057 0.000 0.000 0.000 0.000 0.001 0.000 0.002 0.000 0.000 0.000 0.099 0.016 0.061 0.000 0.000 0.650 - 10.45 51.08 1987 0.000 0.000 0.011 0.314 0.062 0.001 0.044 0.055 0.000 0.000 0.000 0.000 0.000 0.000 0.002 0.000 0.000 0.000 0.096 0.014 0.055 0.000 0.000 0.654 - 10.45 51.08 1988 0.000 0.000 0.008 0.265 0.048 0.000 0.038 0.045 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.078 0.011 0.045 0.000 0.000 0.537 - 10.45 51.08 1989 0.000 0.000 0.007 0.263 0.041 0.000 0.035 0.037 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.067 0.008 0.040 0.000 0.000 0.499 - 10.45 51.08 1990 0.000 0.000 0.009 0.344 0.049 0.000 0.044 0.046 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.080 0.010 0.050 0.000 0.000 0.632 - 10.45 51.08 1991 0.000 0.000 0.005 0.268 0.028 0.000 0.030 0.029 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.049 0.006 0.031 0.000 0.000 0.446 - 10.45 51.08 1992 0.000 0.000 0.007 0.292 0.038 0.000 0.041 0.034 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.065 0.008 0.041 0.000 0.000 0.527 - 10.45 51.08 1993 0.000 0.000 0.007 0.383 0.050 0.000 0.053 0.041 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.086 0.008 0.054 0.000 0.000 0.682 - 10.45 51.08 1994 0.000 0.000 0.007 0.384 0.050 0.000 0.055 0.041 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.083 0.008 0.055 0.000 0.000 0.684 - 10.45 51.08 1995 0.000 0.000 0.006 0.389 0.046 0.000 0.053 0.039 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.074 0.006 0.052 0.000 0.000 0.665 - 10.45 51.08 1996 0.000 0.000 0.004 0.377 0.041 0.000 0.049 0.034 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.065 0.005 0.046 0.000 0.000 0.620 - 10.45 51.08 1997 0.000 0.000 0.004 0.415 0.041 0.000 0.052 0.034 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.065 0.003 0.046 0.000 0.000 0.660 - 10.45 51.08 1998 0.000 0.000 0.003 0.397 0.033 0.000 0.047 0.031 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.058 0.003 0.041 0.000 0.000 0.613 - 10.45 51.08 1999 0.000 0.000 0.003 0.459 0.037 0.000 0.055 0.034 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.060 0.003 0.045 0.000 0.000 0.697 - 10.45 51.08 2000 0.000 0.000 0.002 0.422 0.029 0.000 0.049 0.027 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.049 0.003 0.037 0.000 0.000 0.617 - 10.45 51.08 2001 0.000 0.000 0.002 0.438 0.029 0.000 0.048 0.028 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.049 0.002 0.037 0.000 0.000 0.633 - 10.45 51.08 2002 0.000 0.000 0.001 0.450 0.025 0.000 0.047 0.026 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.043 0.002 0.034 0.000 0.000 0.628 - 10.45 51.08 2003 0.000 0.000 0.001 0.380 0.020 0.000 0.039 0.020 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.034 0.002 0.025 0.000 0.000 0.520 - 10.45 51.08 2004 0.000 0.000 0.001 0.442 0.021 0.000 0.045 0.023 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.038 0.002 0.028 0.000 0.000 0.599 - 10.45 51.08 2005 0.000 0.000 0.001 0.497 0.018 0.000 0.049 0.023 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.033 0.002 0.028 0.000 0.000 0.651 - 10.45 51.08 2006 0.000 0.000 0.001 0.493 0.018 0.000 0.051 0.023 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.034 0.002 0.029 0.000 0.000 0.650 - 10.45 51.08 2007 0.000 0.000 0.000 0.546 0.017 0.000 0.051 0.025 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.036 0.002 0.028 0.000 0.000 0.706 - 10.45 51.08 2008 0.000 0.000 0.000 0.458 0.014 0.000 0.042 0.018 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.026 0.001 0.020 0.000 0.000 0.578 - 10.45 51.08 2009 0.000 0.000 0.000 0.493 0.013 0.000 0.054 0.020 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.033 0.002 0.025 0.000 0.000 0.641 - 10.45 51.08 2010 0.000 0.000 0.000 0.512 0.013 0.000 0.052 0.020 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.029 0.001 0.024 0.000 0.000 0.651 - 10.45 51.08 2011 0.000 0.000 0.000 0.541 0.013 0.000 0.056 0.018 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.028 0.001 0.025 0.000 0.000 0.683 - 10.45 51.08 2012 0.000 0.000 0.000 0.528 0.011 0.000 0.050 0.015 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.024 0.001 0.022 0.000 0.000 0.651 diff --git a/rLPJGUESS/inst/extdata/outputsForTests/run_patcharea/outDirectory/cflux.out b/rLPJGUESS/inst/extdata/outputsForTests/run_patcharea/outDirectory/cflux.out deleted file mode 100644 index 185df0e..0000000 --- a/rLPJGUESS/inst/extdata/outputsForTests/run_patcharea/outDirectory/cflux.out +++ /dev/null @@ -1,63 +0,0 @@ - Lon Lat Year Veg Repr Soil Fire Est NEE - 10.45 51.08 1951 -0.401 0.040 0.324 0.005 0.000 -0.03240 - 10.45 51.08 1952 -0.414 0.041 0.338 0.023 0.000 -0.01202 - 10.45 51.08 1953 -0.435 0.044 0.374 0.004 0.000 -0.01367 - 10.45 51.08 1954 -0.370 0.037 0.306 0.004 0.000 -0.02332 - 10.45 51.08 1955 -0.358 0.036 0.284 0.004 0.000 -0.03359 - 10.45 51.08 1956 -0.381 0.038 0.275 0.004 0.000 -0.06411 - 10.45 51.08 1957 -0.402 0.040 0.317 0.004 0.000 -0.04163 - 10.45 51.08 1958 0.000 -0.000 0.649 0.015 0.000 0.66345 - 10.45 51.08 1959 0.000 -0.000 0.655 0.014 -0.551 0.11828 - 10.45 51.08 1960 0.000 -0.000 0.739 0.014 0.000 0.75278 - 10.45 51.08 1961 0.000 -0.000 0.568 0.013 -0.468 0.11317 - 10.45 51.08 1962 -0.444 0.044 0.562 0.120 -0.005 0.27691 - 10.45 51.08 1963 -0.505 0.051 0.665 0.071 0.000 0.28087 - 10.45 51.08 1964 -0.588 0.059 0.740 0.099 0.000 0.31029 - 10.45 51.08 1965 -0.625 0.064 0.560 0.011 0.000 0.00982 - 10.45 51.08 1966 -0.730 0.073 0.567 0.011 0.000 -0.07943 - 10.45 51.08 1967 -0.731 0.073 0.629 0.024 0.000 -0.00535 - 10.45 51.08 1968 -0.710 0.071 0.626 0.074 0.000 0.06015 - 10.45 51.08 1969 -0.673 0.067 0.578 0.054 0.000 0.02717 - 10.45 51.08 1970 -0.659 0.066 0.586 0.060 0.000 0.05262 - 10.45 51.08 1971 -0.548 0.055 0.704 0.080 0.000 0.29044 - 10.45 51.08 1972 -0.674 0.067 0.520 0.009 0.000 -0.07813 - 10.45 51.08 1973 -0.479 0.048 0.670 0.075 0.000 0.31460 - 10.45 51.08 1974 -0.697 0.070 0.596 0.028 0.000 -0.00326 - 10.45 51.08 1975 -0.621 0.062 0.684 0.068 0.000 0.19375 - 10.45 51.08 1976 -0.371 0.037 0.657 0.073 0.000 0.39658 - 10.45 51.08 1977 -0.642 0.064 0.475 0.031 0.000 -0.07183 - 10.45 51.08 1978 -0.646 0.065 0.562 0.059 0.000 0.03915 - 10.45 51.08 1979 -0.612 0.061 0.567 0.059 0.000 0.07437 - 10.45 51.08 1980 -0.546 0.055 0.549 0.062 0.000 0.11916 - 10.45 51.08 1981 -0.672 0.067 0.496 0.015 0.000 -0.09388 - 10.45 51.08 1982 -0.362 0.036 0.661 0.065 0.000 0.40089 - 10.45 51.08 1983 -0.570 0.057 0.586 0.063 0.000 0.13536 - 10.45 51.08 1984 -0.571 0.057 0.416 0.007 0.000 -0.09133 - 10.45 51.08 1985 -0.598 0.060 0.565 0.079 0.000 0.10588 - 10.45 51.08 1986 -0.650 0.065 0.499 0.044 0.000 -0.04213 - 10.45 51.08 1987 -0.654 0.065 0.397 0.006 0.000 -0.18543 - 10.45 51.08 1988 -0.537 0.054 0.579 0.063 0.000 0.15832 - 10.45 51.08 1989 -0.499 0.050 0.578 0.051 0.000 0.18008 - 10.45 51.08 1990 -0.632 0.063 0.546 0.048 0.000 0.02528 - 10.45 51.08 1991 -0.446 0.045 0.525 0.057 0.000 0.17991 - 10.45 51.08 1992 -0.527 0.053 0.539 0.045 0.000 0.10930 - 10.45 51.08 1993 -0.682 0.068 0.419 0.023 0.000 -0.17126 - 10.45 51.08 1994 -0.684 0.068 0.498 0.008 0.000 -0.10887 - 10.45 51.08 1995 -0.665 0.066 0.437 0.005 0.000 -0.15616 - 10.45 51.08 1996 -0.620 0.062 0.360 0.005 0.000 -0.19278 - 10.45 51.08 1997 -0.660 0.066 0.502 0.041 0.000 -0.05017 - 10.45 51.08 1998 -0.613 0.061 0.491 0.031 0.000 -0.02891 - 10.45 51.08 1999 -0.697 0.070 0.505 0.028 0.000 -0.09489 - 10.45 51.08 2000 -0.617 0.062 0.518 0.038 0.000 0.00101 - 10.45 51.08 2001 -0.633 0.063 0.461 0.026 0.000 -0.08254 - 10.45 51.08 2002 -0.628 0.063 0.402 0.004 0.000 -0.15921 - 10.45 51.08 2003 -0.520 0.052 0.542 0.036 0.000 0.10997 - 10.45 51.08 2004 -0.599 0.060 0.455 0.036 0.000 -0.04907 - 10.45 51.08 2005 -0.651 0.065 0.494 0.035 0.000 -0.05795 - 10.45 51.08 2006 -0.650 0.065 0.484 0.026 0.000 -0.07485 - 10.45 51.08 2007 -0.706 0.071 0.395 0.012 0.000 -0.22837 - 10.45 51.08 2008 -0.578 0.058 0.468 0.032 0.000 -0.01960 - 10.45 51.08 2009 -0.641 0.064 0.447 0.018 0.000 -0.11122 - 10.45 51.08 2010 -0.651 0.065 0.375 0.016 0.000 -0.19522 - 10.45 51.08 2011 -0.683 0.068 0.468 0.031 0.000 -0.11586 - 10.45 51.08 2012 -0.651 0.065 0.450 0.032 0.000 -0.10334 diff --git a/rLPJGUESS/inst/extdata/outputsForTests/run_patcharea/outDirectory/clitter.out b/rLPJGUESS/inst/extdata/outputsForTests/run_patcharea/outDirectory/clitter.out deleted file mode 100644 index 0f16c5b..0000000 --- a/rLPJGUESS/inst/extdata/outputsForTests/run_patcharea/outDirectory/clitter.out +++ /dev/null @@ -1,63 +0,0 @@ - Lon Lat Year Abi_alb BES Bet_pen Bet_pub Car_bet Cor_ave Fag_syl Fra_exc Jun_oxy MRS Pic_abi Pic_sit Pin_syl Pin_hal Pop_tre Que_coc Que_ile Que_pub Que_rob Til_cor Ulm_gla C3_gr C4_gr Total - 10.45 51.08 1951 0.000 0.000 0.000 0.000 0.000 0.000 0.201 0.001 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.201 - 10.45 51.08 1952 0.000 0.000 0.000 0.000 0.000 0.000 0.200 0.125 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.325 - 10.45 51.08 1953 0.000 0.000 0.000 0.000 0.000 0.000 0.200 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.200 - 10.45 51.08 1954 0.000 0.000 0.000 0.000 0.000 0.000 0.201 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.201 - 10.45 51.08 1955 0.000 0.000 0.000 0.000 0.000 0.000 0.199 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.199 - 10.45 51.08 1956 0.000 0.000 0.000 0.000 0.000 0.000 0.196 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.196 - 10.45 51.08 1957 0.000 0.000 0.000 0.000 0.000 0.000 12.718 0.125 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 12.843 - 10.45 51.08 1958 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1959 0.000 0.016 0.012 0.023 0.015 0.007 0.006 0.019 0.000 0.000 0.003 0.008 0.013 0.000 0.014 0.000 0.000 0.000 0.014 0.009 0.018 0.375 0.000 0.551 - 10.45 51.08 1960 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1961 0.000 0.000 0.001 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.001 - 10.45 51.08 1962 0.000 0.002 0.004 0.004 0.004 0.003 0.001 0.004 0.000 0.000 0.001 0.003 0.005 0.000 0.004 0.000 0.000 0.000 0.005 0.003 0.005 0.249 0.000 0.297 - 10.45 51.08 1963 0.000 0.004 0.007 0.008 0.007 0.006 0.003 0.007 0.000 0.000 0.002 0.005 0.005 0.000 0.007 0.000 0.000 0.000 0.010 0.005 0.009 0.203 0.000 0.289 - 10.45 51.08 1964 0.000 0.005 0.012 0.013 0.012 0.010 0.005 0.013 0.000 0.000 0.003 0.008 0.008 0.000 0.012 0.000 0.000 0.000 0.017 0.008 0.016 0.116 0.000 0.257 - 10.45 51.08 1965 0.000 0.006 0.019 0.030 0.018 0.014 0.007 0.019 0.000 0.000 0.004 0.010 0.010 0.000 0.018 0.000 0.000 0.000 0.026 0.012 0.024 0.042 0.000 0.257 - 10.45 51.08 1966 0.000 0.006 0.023 0.025 0.023 0.017 0.009 0.025 0.000 0.000 0.004 0.011 0.012 0.000 0.022 0.000 0.000 0.000 0.034 0.019 0.030 0.000 0.000 0.260 - 10.45 51.08 1967 0.000 0.006 0.029 0.032 0.028 0.019 0.012 0.030 0.000 0.000 0.005 0.012 0.012 0.000 0.027 0.000 0.000 0.000 0.042 0.018 0.037 0.000 0.000 0.309 - 10.45 51.08 1968 0.000 0.006 0.032 0.038 0.032 0.021 0.013 0.034 0.000 0.000 0.005 0.012 0.013 0.000 0.030 0.000 0.000 0.000 0.047 0.021 0.042 0.000 0.000 0.345 - 10.45 51.08 1969 0.000 0.011 0.034 0.043 0.035 0.021 0.015 0.037 0.000 0.000 0.005 0.011 0.012 0.000 0.032 0.000 0.000 0.000 0.052 0.022 0.046 0.000 0.000 0.376 - 10.45 51.08 1970 0.000 0.008 0.051 0.047 0.037 0.028 0.016 0.040 0.000 0.000 0.004 0.010 0.011 0.000 0.047 0.000 0.000 0.000 0.055 0.037 0.049 0.000 0.000 0.438 - 10.45 51.08 1971 0.000 0.010 0.053 0.050 0.038 0.026 0.017 0.041 0.000 0.000 0.004 0.008 0.010 0.000 0.046 0.000 0.000 0.000 0.056 0.021 0.085 0.000 0.000 0.464 - 10.45 51.08 1972 0.000 0.012 0.031 0.053 0.039 0.024 0.017 0.042 0.000 0.000 0.004 0.006 0.010 0.000 0.061 0.000 0.000 0.000 0.077 0.021 0.047 0.000 0.000 0.442 - 10.45 51.08 1973 0.000 0.001 0.030 0.056 0.038 0.021 0.017 0.042 0.000 0.000 0.003 0.005 0.008 0.000 0.056 0.000 0.000 0.000 0.055 0.020 0.066 0.000 0.000 0.420 - 10.45 51.08 1974 0.000 0.002 0.087 0.104 0.038 0.012 0.018 0.041 0.000 0.000 0.003 0.004 0.008 0.000 0.054 0.000 0.000 0.000 0.055 0.020 0.044 0.000 0.000 0.488 - 10.45 51.08 1975 0.000 0.003 0.044 0.058 0.038 0.020 0.018 0.042 0.000 0.000 0.002 0.004 0.010 0.000 0.034 0.000 0.000 0.000 0.056 0.022 0.112 0.000 0.000 0.466 - 10.45 51.08 1976 0.000 0.007 0.022 0.063 0.039 0.024 0.019 0.043 0.000 0.000 0.002 0.002 0.006 0.000 0.032 0.000 0.000 0.000 0.058 0.036 0.038 0.000 0.000 0.392 - 10.45 51.08 1977 0.000 0.000 0.042 0.065 0.042 0.007 0.019 0.042 0.000 0.000 0.002 0.002 0.006 0.000 0.012 0.000 0.000 0.000 0.057 0.017 0.037 0.000 0.000 0.349 - 10.45 51.08 1978 0.000 0.000 0.018 0.076 0.037 0.006 0.019 0.041 0.000 0.000 0.001 0.001 0.004 0.000 0.031 0.000 0.000 0.000 0.056 0.016 0.037 0.000 0.000 0.343 - 10.45 51.08 1979 0.000 0.000 0.065 0.074 0.038 0.013 0.020 0.073 0.000 0.000 0.001 0.000 0.004 0.000 0.010 0.000 0.000 0.000 0.058 0.016 0.065 0.000 0.000 0.436 - 10.45 51.08 1980 0.000 0.000 0.038 0.079 0.039 0.012 0.020 0.041 0.000 0.000 0.001 0.000 0.006 0.000 0.030 0.000 0.000 0.000 0.059 0.036 0.036 0.000 0.000 0.396 - 10.45 51.08 1981 0.000 0.000 0.012 0.179 0.039 0.011 0.021 0.071 0.000 0.000 0.011 0.000 0.003 0.000 0.008 0.000 0.000 0.000 0.059 0.014 0.036 0.000 0.000 0.464 - 10.45 51.08 1982 0.000 0.000 0.012 0.083 0.039 0.010 0.024 0.068 0.000 0.000 0.000 0.000 0.003 0.000 0.028 0.000 0.000 0.000 0.060 0.014 0.036 0.000 0.000 0.378 - 10.45 51.08 1983 0.000 0.000 0.036 0.085 0.038 0.009 0.021 0.036 0.000 0.000 0.000 0.000 0.002 0.000 0.027 0.000 0.000 0.000 0.058 0.033 0.069 0.000 0.000 0.415 - 10.45 51.08 1984 0.000 0.000 0.034 0.088 0.037 0.002 0.022 0.035 0.000 0.000 0.000 0.000 0.004 0.000 0.004 0.000 0.000 0.000 0.090 0.011 0.033 0.000 0.000 0.359 - 10.45 51.08 1985 0.000 0.000 0.007 0.089 0.036 0.022 0.021 0.101 0.000 0.000 0.000 0.000 0.001 0.000 0.048 0.000 0.000 0.000 0.087 0.010 0.031 0.000 0.000 0.453 - 10.45 51.08 1986 0.000 0.000 0.007 0.099 0.071 0.001 0.023 0.031 0.000 0.000 0.000 0.000 0.001 0.000 0.001 0.000 0.000 0.000 0.054 0.010 0.068 0.000 0.000 0.367 - 10.45 51.08 1987 0.000 0.000 0.007 0.103 0.035 0.007 0.024 0.031 0.000 0.000 0.000 0.000 0.037 0.000 0.024 0.000 0.000 0.000 0.054 0.010 0.031 0.000 0.000 0.363 - 10.45 51.08 1988 0.000 0.000 0.007 0.111 0.070 0.000 0.024 0.068 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.092 0.032 0.031 0.000 0.000 0.436 - 10.45 51.08 1989 0.000 0.000 0.006 0.118 0.033 0.020 0.025 0.029 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.090 0.008 0.031 0.000 0.000 0.360 - 10.45 51.08 1990 0.000 0.000 0.006 0.120 0.068 0.000 0.025 0.028 0.000 0.000 0.000 0.001 0.000 0.000 0.000 0.000 0.000 0.000 0.048 0.007 0.030 0.000 0.000 0.333 - 10.45 51.08 1991 0.000 0.000 0.006 0.328 0.029 0.000 0.026 0.066 0.000 0.000 0.000 0.018 0.000 0.000 0.000 0.000 0.000 0.000 0.047 0.007 0.030 0.000 0.000 0.557 - 10.45 51.08 1992 0.000 0.000 0.033 0.118 0.027 0.000 0.025 0.063 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.045 0.029 0.028 0.000 0.000 0.368 - 10.45 51.08 1993 0.000 0.000 0.004 0.354 0.026 0.000 0.025 0.020 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.084 0.005 0.027 0.000 0.000 0.545 - 10.45 51.08 1994 0.000 0.000 0.004 0.115 0.026 0.000 0.026 0.021 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.085 0.028 0.028 0.000 0.000 0.333 - 10.45 51.08 1995 0.000 0.000 0.033 0.125 0.027 0.000 0.028 0.022 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.041 0.004 0.029 0.000 0.000 0.309 - 10.45 51.08 1996 0.000 0.000 0.003 0.133 0.027 0.000 0.029 0.022 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.042 0.027 0.030 0.000 0.000 0.313 - 10.45 51.08 1997 0.000 0.000 0.003 0.138 0.069 0.000 0.029 0.022 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.041 0.003 0.029 0.000 0.000 0.334 - 10.45 51.08 1998 0.000 0.000 0.002 0.146 0.025 0.000 0.030 0.022 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.088 0.003 0.029 0.000 0.000 0.345 - 10.45 51.08 1999 0.000 0.000 0.002 0.151 0.024 0.000 0.031 0.021 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.038 0.003 0.028 0.000 0.000 0.298 - 10.45 51.08 2000 0.000 0.000 0.032 0.157 0.023 0.000 0.031 0.021 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.037 0.002 0.028 0.000 0.000 0.332 - 10.45 51.08 2001 0.000 0.000 0.001 0.162 0.066 0.000 0.031 0.020 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.085 0.002 0.027 0.000 0.000 0.395 - 10.45 51.08 2002 0.000 0.000 0.031 0.166 0.020 0.000 0.031 0.020 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.033 0.002 0.076 0.000 0.000 0.378 - 10.45 51.08 2003 0.000 0.000 0.001 0.168 0.062 0.000 0.031 0.019 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.031 0.002 0.023 0.000 0.000 0.336 - 10.45 51.08 2004 0.000 0.000 0.001 0.171 0.060 0.000 0.031 0.018 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.130 0.002 0.022 0.000 0.000 0.433 - 10.45 51.08 2005 0.000 0.000 0.000 0.173 0.014 0.000 0.031 0.017 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.025 0.002 0.021 0.000 0.000 0.283 - 10.45 51.08 2006 0.000 0.000 0.030 0.176 0.013 0.000 0.030 0.016 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.023 0.002 0.071 0.000 0.000 0.362 - 10.45 51.08 2007 0.000 0.000 0.000 0.181 0.013 0.000 0.031 0.016 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.023 0.001 0.018 0.000 0.000 0.282 - 10.45 51.08 2008 0.000 0.000 0.000 0.776 0.102 0.000 0.031 0.067 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.023 0.001 0.017 0.000 0.000 1.017 - 10.45 51.08 2009 0.000 0.000 0.000 0.171 0.009 0.000 0.031 0.013 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.074 0.001 0.017 0.000 0.000 0.316 - 10.45 51.08 2010 0.000 0.000 0.000 0.172 0.009 0.000 0.031 0.066 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.072 0.001 0.016 0.000 0.000 0.367 - 10.45 51.08 2011 0.000 0.000 0.000 0.177 0.009 0.000 0.031 0.011 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.017 0.025 0.016 0.000 0.000 0.286 - 10.45 51.08 2012 0.000 0.000 0.000 0.184 0.009 0.000 0.032 0.011 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.017 0.001 0.016 0.000 0.000 0.269 diff --git a/rLPJGUESS/inst/extdata/outputsForTests/run_patcharea/outDirectory/cmass.out b/rLPJGUESS/inst/extdata/outputsForTests/run_patcharea/outDirectory/cmass.out deleted file mode 100644 index 0eec974..0000000 --- a/rLPJGUESS/inst/extdata/outputsForTests/run_patcharea/outDirectory/cmass.out +++ /dev/null @@ -1,63 +0,0 @@ - Lon Lat Year Abi_alb BES Bet_pen Bet_pub Car_bet Cor_ave Fag_syl Fra_exc Jun_oxy MRS Pic_abi Pic_sit Pin_syl Pin_hal Pop_tre Que_coc Que_ile Que_pub Que_rob Til_cor Ulm_gla C3_gr C4_gr Total - 10.45 51.08 1951 0.000 0.000 0.000 0.000 0.000 0.000 11.592 0.249 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 11.841 - 10.45 51.08 1952 0.000 0.000 0.000 0.000 0.000 0.000 11.764 0.125 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 11.889 - 10.45 51.08 1953 0.000 0.000 0.000 0.000 0.000 0.000 11.955 0.125 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 12.080 - 10.45 51.08 1954 0.000 0.000 0.000 0.000 0.000 0.000 12.087 0.125 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 12.212 - 10.45 51.08 1955 0.000 0.000 0.000 0.000 0.000 0.000 12.210 0.125 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 12.335 - 10.45 51.08 1956 0.000 0.000 0.000 0.000 0.000 0.000 12.356 0.125 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 12.481 - 10.45 51.08 1957 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1958 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1959 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1960 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1961 0.000 0.014 0.012 0.012 0.011 0.012 0.004 0.012 0.000 0.000 0.004 0.010 0.012 0.000 0.012 0.000 0.000 0.000 0.017 0.008 0.015 0.311 0.000 0.467 - 10.45 51.08 1962 0.000 0.022 0.027 0.028 0.025 0.025 0.010 0.027 0.000 0.000 0.006 0.017 0.020 0.000 0.026 0.000 0.000 0.000 0.037 0.017 0.033 0.255 0.000 0.574 - 10.45 51.08 1963 0.000 0.032 0.052 0.058 0.049 0.046 0.019 0.052 0.000 0.000 0.010 0.026 0.032 0.000 0.049 0.000 0.000 0.000 0.072 0.033 0.064 0.145 0.000 0.740 - 10.45 51.08 1964 0.000 0.040 0.086 0.100 0.082 0.072 0.032 0.088 0.000 0.000 0.014 0.035 0.044 0.000 0.082 0.000 0.000 0.000 0.121 0.055 0.108 0.052 0.000 1.011 - 10.45 51.08 1965 0.000 0.046 0.121 0.138 0.116 0.095 0.046 0.124 0.000 0.000 0.017 0.043 0.055 0.000 0.114 0.000 0.000 0.000 0.171 0.077 0.152 0.000 0.000 1.316 - 10.45 51.08 1966 0.000 0.048 0.161 0.191 0.155 0.119 0.061 0.166 0.000 0.000 0.019 0.047 0.061 0.000 0.152 0.000 0.000 0.000 0.229 0.099 0.204 0.000 0.000 1.713 - 10.45 51.08 1967 0.000 0.049 0.195 0.248 0.188 0.136 0.075 0.203 0.000 0.000 0.021 0.048 0.067 0.000 0.184 0.000 0.000 0.000 0.281 0.119 0.249 0.000 0.000 2.062 - 10.45 51.08 1968 0.000 0.046 0.224 0.304 0.218 0.146 0.088 0.235 0.000 0.000 0.020 0.045 0.067 0.000 0.210 0.000 0.000 0.000 0.326 0.136 0.289 0.000 0.000 2.354 - 10.45 51.08 1969 0.000 0.037 0.248 0.356 0.243 0.151 0.098 0.262 0.000 0.000 0.019 0.040 0.064 0.000 0.230 0.000 0.000 0.000 0.365 0.148 0.323 0.000 0.000 2.583 - 10.45 51.08 1970 0.000 0.031 0.253 0.407 0.265 0.145 0.107 0.286 0.000 0.000 0.017 0.035 0.061 0.000 0.233 0.000 0.000 0.000 0.399 0.144 0.353 0.000 0.000 2.737 - 10.45 51.08 1971 0.000 0.023 0.244 0.447 0.277 0.133 0.112 0.300 0.000 0.000 0.016 0.031 0.058 0.000 0.225 0.000 0.000 0.000 0.418 0.146 0.335 0.000 0.000 2.765 - 10.45 51.08 1972 0.000 0.013 0.262 0.517 0.299 0.126 0.123 0.326 0.000 0.000 0.015 0.029 0.057 0.000 0.208 0.000 0.000 0.000 0.436 0.155 0.364 0.000 0.000 2.930 - 10.45 51.08 1973 0.000 0.012 0.267 0.556 0.305 0.114 0.125 0.333 0.000 0.000 0.014 0.026 0.055 0.000 0.177 0.000 0.000 0.000 0.446 0.156 0.352 0.000 0.000 2.940 - 10.45 51.08 1974 0.000 0.010 0.230 0.601 0.332 0.116 0.138 0.363 0.000 0.000 0.013 0.025 0.054 0.000 0.156 0.000 0.000 0.000 0.487 0.167 0.385 0.000 0.000 3.078 - 10.45 51.08 1975 0.000 0.007 0.223 0.677 0.353 0.106 0.148 0.388 0.000 0.000 0.013 0.023 0.051 0.000 0.145 0.000 0.000 0.000 0.521 0.172 0.343 0.000 0.000 3.170 - 10.45 51.08 1976 0.000 0.000 0.221 0.707 0.350 0.087 0.146 0.385 0.000 0.000 0.012 0.021 0.048 0.000 0.125 0.000 0.000 0.000 0.517 0.151 0.340 0.000 0.000 3.110 - 10.45 51.08 1977 0.000 0.000 0.212 0.805 0.372 0.087 0.159 0.413 0.000 0.000 0.011 0.021 0.046 0.000 0.132 0.000 0.000 0.000 0.555 0.160 0.365 0.000 0.000 3.338 - 10.45 51.08 1978 0.000 0.000 0.224 0.906 0.396 0.088 0.172 0.442 0.000 0.000 0.011 0.020 0.046 0.000 0.118 0.000 0.000 0.000 0.594 0.168 0.391 0.000 0.000 3.576 - 10.45 51.08 1979 0.000 0.000 0.185 1.008 0.415 0.080 0.183 0.435 0.000 0.000 0.011 0.020 0.046 0.000 0.122 0.000 0.000 0.000 0.626 0.174 0.384 0.000 0.000 3.690 - 10.45 51.08 1980 0.000 0.000 0.165 1.099 0.428 0.071 0.191 0.450 0.000 0.000 0.011 0.020 0.043 0.000 0.103 0.000 0.000 0.000 0.647 0.157 0.397 0.000 0.000 3.784 - 10.45 51.08 1981 0.000 0.000 0.172 1.143 0.452 0.064 0.206 0.448 0.000 0.000 0.000 0.020 0.042 0.000 0.107 0.000 0.000 0.000 0.686 0.163 0.421 0.000 0.000 3.924 - 10.45 51.08 1982 0.000 0.000 0.169 1.183 0.447 0.055 0.202 0.414 0.000 0.000 0.000 0.020 0.041 0.000 0.084 0.000 0.000 0.000 0.680 0.159 0.417 0.000 0.000 3.870 - 10.45 51.08 1983 0.000 0.000 0.148 1.288 0.464 0.048 0.213 0.431 0.000 0.000 0.000 0.020 0.040 0.000 0.064 0.000 0.000 0.000 0.708 0.142 0.400 0.000 0.000 3.967 - 10.45 51.08 1984 0.000 0.000 0.126 1.407 0.480 0.048 0.225 0.448 0.000 0.000 0.000 0.020 0.037 0.000 0.065 0.000 0.000 0.000 0.704 0.145 0.416 0.000 0.000 4.122 - 10.45 51.08 1985 0.000 0.000 0.130 1.541 0.501 0.027 0.240 0.402 0.000 0.000 0.000 0.020 0.037 0.000 0.022 0.000 0.000 0.000 0.703 0.148 0.435 0.000 0.000 4.205 - 10.45 51.08 1986 0.000 0.000 0.133 1.701 0.491 0.027 0.256 0.422 0.000 0.000 0.000 0.020 0.037 0.000 0.023 0.000 0.000 0.000 0.738 0.152 0.422 0.000 0.000 4.422 - 10.45 51.08 1987 0.000 0.000 0.136 1.880 0.512 0.020 0.273 0.441 0.000 0.000 0.000 0.020 0.000 0.000 0.000 0.000 0.000 0.000 0.771 0.155 0.441 0.000 0.000 4.648 - 10.45 51.08 1988 0.000 0.000 0.137 2.007 0.485 0.020 0.282 0.412 0.000 0.000 0.000 0.020 0.000 0.000 0.000 0.000 0.000 0.000 0.749 0.133 0.450 0.000 0.000 4.694 - 10.45 51.08 1989 0.000 0.000 0.137 2.126 0.489 0.000 0.288 0.417 0.000 0.000 0.000 0.020 0.000 0.000 0.000 0.000 0.000 0.000 0.720 0.132 0.455 0.000 0.000 4.782 - 10.45 51.08 1990 0.000 0.000 0.138 2.315 0.465 0.000 0.302 0.430 0.000 0.000 0.000 0.018 0.000 0.000 0.000 0.000 0.000 0.000 0.743 0.134 0.469 0.000 0.000 5.016 - 10.45 51.08 1991 0.000 0.000 0.137 2.228 0.461 0.000 0.303 0.390 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.740 0.132 0.467 0.000 0.000 4.859 - 10.45 51.08 1992 0.000 0.000 0.110 2.373 0.468 0.000 0.315 0.357 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.754 0.110 0.476 0.000 0.000 4.964 - 10.45 51.08 1993 0.000 0.000 0.113 2.363 0.488 0.000 0.338 0.373 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.747 0.113 0.498 0.000 0.000 5.032 - 10.45 51.08 1994 0.000 0.000 0.115 2.593 0.507 0.000 0.361 0.390 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.736 0.092 0.520 0.000 0.000 5.314 - 10.45 51.08 1995 0.000 0.000 0.088 2.819 0.521 0.000 0.381 0.403 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.761 0.093 0.537 0.000 0.000 5.603 - 10.45 51.08 1996 0.000 0.000 0.088 3.025 0.531 0.000 0.395 0.412 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.777 0.071 0.549 0.000 0.000 5.848 - 10.45 51.08 1997 0.000 0.000 0.089 3.260 0.499 0.000 0.412 0.421 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.794 0.071 0.561 0.000 0.000 6.107 - 10.45 51.08 1998 0.000 0.000 0.089 3.471 0.505 0.000 0.424 0.426 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.758 0.071 0.568 0.000 0.000 6.312 - 10.45 51.08 1999 0.000 0.000 0.090 3.732 0.514 0.000 0.443 0.436 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.774 0.071 0.581 0.000 0.000 6.641 - 10.45 51.08 2000 0.000 0.000 0.060 3.954 0.517 0.000 0.455 0.439 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.781 0.071 0.586 0.000 0.000 6.864 - 10.45 51.08 2001 0.000 0.000 0.060 4.185 0.477 0.000 0.467 0.444 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.740 0.071 0.592 0.000 0.000 7.037 - 10.45 51.08 2002 0.000 0.000 0.030 4.424 0.480 0.000 0.478 0.448 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.746 0.071 0.547 0.000 0.000 7.224 - 10.45 51.08 2003 0.000 0.000 0.030 4.598 0.436 0.000 0.482 0.447 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.745 0.070 0.546 0.000 0.000 7.354 - 10.45 51.08 2004 0.000 0.000 0.030 4.824 0.394 0.000 0.491 0.450 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.650 0.070 0.550 0.000 0.000 7.459 - 10.45 51.08 2005 0.000 0.000 0.030 5.097 0.396 0.000 0.505 0.454 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.655 0.071 0.554 0.000 0.000 7.762 - 10.45 51.08 2006 0.000 0.000 0.000 5.363 0.400 0.000 0.520 0.458 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.662 0.070 0.509 0.000 0.000 7.983 - 10.45 51.08 2007 0.000 0.000 0.000 5.674 0.402 0.000 0.535 0.465 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.672 0.071 0.517 0.000 0.000 8.336 - 10.45 51.08 2008 0.000 0.000 0.000 5.309 0.313 0.000 0.541 0.414 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.673 0.070 0.517 0.000 0.000 7.838 - 10.45 51.08 2009 0.000 0.000 0.000 5.582 0.316 0.000 0.559 0.419 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.628 0.070 0.524 0.000 0.000 8.098 - 10.45 51.08 2010 0.000 0.000 0.000 5.870 0.319 0.000 0.574 0.371 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.583 0.071 0.530 0.000 0.000 8.317 - 10.45 51.08 2011 0.000 0.000 0.000 6.180 0.322 0.000 0.594 0.375 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.590 0.047 0.536 0.000 0.000 8.644 - 10.45 51.08 2012 0.000 0.000 0.000 6.470 0.323 0.000 0.607 0.378 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.594 0.047 0.540 0.000 0.000 8.959 diff --git a/rLPJGUESS/inst/extdata/outputsForTests/run_patcharea/outDirectory/cpool.out b/rLPJGUESS/inst/extdata/outputsForTests/run_patcharea/outDirectory/cpool.out deleted file mode 100644 index 2251ef3..0000000 --- a/rLPJGUESS/inst/extdata/outputsForTests/run_patcharea/outDirectory/cpool.out +++ /dev/null @@ -1,63 +0,0 @@ - Lon Lat Year VegC LitterC SoilC Total - 10.45 51.08 1951 11.841 5.193 12.034 29.067 - 10.45 51.08 1952 11.889 5.168 12.023 29.079 - 10.45 51.08 1953 12.080 5.011 12.002 29.093 - 10.45 51.08 1954 12.212 4.909 11.995 29.116 - 10.45 51.08 1955 12.335 4.821 11.995 29.150 - 10.45 51.08 1956 12.481 4.737 11.996 29.214 - 10.45 51.08 1957 0.000 17.269 11.987 29.256 - 10.45 51.08 1958 0.000 16.467 12.125 28.592 - 10.45 51.08 1959 0.000 16.280 12.194 28.474 - 10.45 51.08 1960 0.000 15.366 12.355 27.721 - 10.45 51.08 1961 0.467 14.747 12.394 27.608 - 10.45 51.08 1962 0.574 14.333 12.424 27.331 - 10.45 51.08 1963 0.740 13.785 12.525 27.050 - 10.45 51.08 1964 1.011 13.116 12.613 26.740 - 10.45 51.08 1965 1.316 12.738 12.677 26.730 - 10.45 51.08 1966 1.713 12.364 12.733 26.810 - 10.45 51.08 1967 2.062 11.973 12.781 26.815 - 10.45 51.08 1968 2.354 11.566 12.835 26.755 - 10.45 51.08 1969 2.583 11.251 12.894 26.728 - 10.45 51.08 1970 2.737 10.983 12.955 26.675 - 10.45 51.08 1971 2.765 10.613 13.007 26.385 - 10.45 51.08 1972 2.930 10.466 13.067 26.463 - 10.45 51.08 1973 2.940 10.093 13.115 26.148 - 10.45 51.08 1974 3.078 9.918 13.155 26.151 - 10.45 51.08 1975 3.170 9.605 13.183 25.958 - 10.45 51.08 1976 3.110 9.246 13.204 25.561 - 10.45 51.08 1977 3.338 9.054 13.240 25.633 - 10.45 51.08 1978 3.576 8.753 13.264 25.594 - 10.45 51.08 1979 3.690 8.556 13.274 25.519 - 10.45 51.08 1980 3.784 8.327 13.289 25.400 - 10.45 51.08 1981 3.924 8.262 13.308 25.494 - 10.45 51.08 1982 3.870 7.923 13.300 25.093 - 10.45 51.08 1983 3.967 7.697 13.294 24.958 - 10.45 51.08 1984 4.122 7.611 13.316 25.049 - 10.45 51.08 1985 4.205 7.427 13.311 24.943 - 10.45 51.08 1986 4.422 7.254 13.309 24.985 - 10.45 51.08 1987 4.648 7.197 13.326 25.171 - 10.45 51.08 1988 4.694 7.009 13.309 25.013 - 10.45 51.08 1989 4.782 6.763 13.287 24.832 - 10.45 51.08 1990 5.016 6.524 13.267 24.807 - 10.45 51.08 1991 4.859 6.522 13.247 24.627 - 10.45 51.08 1992 4.964 6.326 13.228 24.518 - 10.45 51.08 1993 5.032 6.431 13.226 24.689 - 10.45 51.08 1994 5.314 6.272 13.212 24.798 - 10.45 51.08 1995 5.603 6.148 13.203 24.954 - 10.45 51.08 1996 5.848 6.086 13.212 25.147 - 10.45 51.08 1997 6.107 5.891 13.199 25.197 - 10.45 51.08 1998 6.312 5.734 13.179 25.226 - 10.45 51.08 1999 6.641 5.524 13.156 25.321 - 10.45 51.08 2000 6.864 5.333 13.124 25.320 - 10.45 51.08 2001 7.037 5.260 13.105 25.403 - 10.45 51.08 2002 7.224 5.234 13.104 25.562 - 10.45 51.08 2003 7.354 5.032 13.066 25.452 - 10.45 51.08 2004 7.459 5.000 13.042 25.501 - 10.45 51.08 2005 7.762 4.789 13.008 25.559 - 10.45 51.08 2006 7.983 4.682 12.968 25.634 - 10.45 51.08 2007 8.336 4.573 12.953 25.862 - 10.45 51.08 2008 7.838 5.126 12.918 25.882 - 10.45 51.08 2009 8.098 4.986 12.909 25.993 - 10.45 51.08 2010 8.317 4.966 12.905 26.188 - 10.45 51.08 2011 8.644 4.781 12.879 26.304 - 10.45 51.08 2012 8.959 4.598 12.850 26.407 diff --git a/rLPJGUESS/inst/extdata/outputsForTests/run_patcharea/outDirectory/cton_leaf.out b/rLPJGUESS/inst/extdata/outputsForTests/run_patcharea/outDirectory/cton_leaf.out deleted file mode 100644 index 4769686..0000000 --- a/rLPJGUESS/inst/extdata/outputsForTests/run_patcharea/outDirectory/cton_leaf.out +++ /dev/null @@ -1,63 +0,0 @@ - Lon Lat Year Abi_alb BES Bet_pen Bet_pub Car_bet Cor_ave Fag_syl Fra_exc Jun_oxy MRS Pic_abi Pic_sit Pin_syl Pin_hal Pop_tre Que_coc Que_ile Que_pub Que_rob Til_cor Ulm_gla C3_gr C4_gr Total - 10.45 51.08 1951 0.0 0.0 0.0 0.0 0.0 0.0 23.6 23.6 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 23.6 - 10.45 51.08 1952 0.0 0.0 0.0 0.0 0.0 0.0 23.6 23.6 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 23.6 - 10.45 51.08 1953 0.0 0.0 0.0 0.0 0.0 0.0 23.6 23.6 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 23.6 - 10.45 51.08 1954 0.0 0.0 0.0 0.0 0.0 0.0 23.6 23.6 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 23.6 - 10.45 51.08 1955 0.0 0.0 0.0 0.0 0.0 0.0 23.6 23.6 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 23.6 - 10.45 51.08 1956 0.0 0.0 0.0 0.0 0.0 0.0 23.6 23.6 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 23.6 - 10.45 51.08 1957 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 - 10.45 51.08 1958 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 - 10.45 51.08 1959 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 - 10.45 51.08 1960 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 - 10.45 51.08 1961 0.0 37.3 23.6 23.6 23.6 23.6 23.6 23.6 0.0 0.0 56.4 60.8 50.7 0.0 23.6 0.0 0.0 0.0 23.6 23.6 23.6 23.6 0.0 24.6 - 10.45 51.08 1962 0.0 37.3 23.6 23.6 23.6 23.6 23.6 23.6 0.0 0.0 56.4 60.8 50.7 0.0 23.6 0.0 0.0 0.0 23.6 23.6 23.6 23.6 0.0 25.0 - 10.45 51.08 1963 0.0 37.3 23.6 23.6 23.6 23.6 23.6 23.6 0.0 0.0 56.4 60.8 50.7 0.0 23.6 0.0 0.0 0.0 23.6 23.6 23.6 23.6 0.0 25.7 - 10.45 51.08 1964 0.0 37.3 23.6 23.6 23.6 23.6 23.6 23.6 0.0 0.0 56.4 60.8 50.7 0.0 23.6 0.0 0.0 0.0 23.6 23.6 23.6 23.6 0.0 26.2 - 10.45 51.08 1965 0.0 37.3 23.6 23.6 23.6 23.6 23.6 23.6 0.0 0.0 56.4 60.8 50.7 0.0 23.6 0.0 0.0 0.0 23.6 23.6 23.6 0.0 0.0 26.3 - 10.45 51.08 1966 0.0 37.3 23.6 23.6 23.6 23.6 23.6 23.6 0.0 0.0 56.4 60.8 50.7 0.0 23.6 0.0 0.0 0.0 23.6 23.6 23.6 0.0 0.0 26.0 - 10.45 51.08 1967 0.0 37.3 23.6 23.6 23.6 23.6 23.6 23.6 0.0 0.0 56.4 60.8 50.7 0.0 23.6 0.0 0.0 0.0 23.6 23.6 23.6 0.0 0.0 25.7 - 10.45 51.08 1968 0.0 37.3 23.6 23.6 23.6 23.6 23.6 23.6 0.0 0.0 56.4 60.8 50.7 0.0 23.6 0.0 0.0 0.0 23.6 23.6 23.6 0.0 0.0 25.5 - 10.45 51.08 1969 0.0 37.3 23.6 23.6 23.6 23.6 23.6 23.6 0.0 0.0 56.4 60.8 50.7 0.0 23.6 0.0 0.0 0.0 23.6 23.6 23.6 0.0 0.0 25.2 - 10.45 51.08 1970 0.0 37.3 23.6 23.6 23.6 23.6 23.6 23.6 0.0 0.0 56.4 60.8 50.7 0.0 23.6 0.0 0.0 0.0 23.6 23.6 23.6 0.0 0.0 25.0 - 10.45 51.08 1971 0.0 37.3 23.6 23.6 23.6 23.6 23.6 23.6 0.0 0.0 56.4 60.8 50.7 0.0 23.6 0.0 0.0 0.0 23.6 23.6 23.6 0.0 0.0 24.8 - 10.45 51.08 1972 0.0 37.3 23.6 23.6 23.6 23.6 23.6 23.6 0.0 0.0 56.4 60.8 50.7 0.0 23.6 0.0 0.0 0.0 23.6 23.6 23.6 0.0 0.0 24.6 - 10.45 51.08 1973 0.0 37.3 23.6 23.6 23.6 23.6 23.6 23.6 0.0 0.0 56.4 60.8 50.7 0.0 23.6 0.0 0.0 0.0 23.6 23.6 23.6 0.0 0.0 24.5 - 10.45 51.08 1974 0.0 37.3 23.6 23.6 23.6 23.6 23.6 23.6 0.0 0.0 56.4 60.8 50.7 0.0 23.6 0.0 0.0 0.0 23.6 23.6 23.6 0.0 0.0 24.4 - 10.45 51.08 1975 0.0 37.3 23.6 23.6 23.6 23.6 23.6 23.6 0.0 0.0 56.4 60.8 50.7 0.0 23.6 0.0 0.0 0.0 23.6 23.6 23.6 0.0 0.0 24.2 - 10.45 51.08 1976 0.0 0.0 23.6 23.6 23.6 23.6 23.6 23.6 0.0 0.0 56.4 60.8 50.7 0.0 23.6 0.0 0.0 0.0 23.6 23.6 23.6 0.0 0.0 24.1 - 10.45 51.08 1977 0.0 0.0 23.6 23.6 23.6 23.6 23.6 23.6 0.0 0.0 56.4 60.8 50.7 0.0 23.6 0.0 0.0 0.0 23.6 23.6 23.6 0.0 0.0 24.0 - 10.45 51.08 1978 0.0 0.0 23.6 23.6 23.6 23.6 23.6 23.6 0.0 0.0 56.4 60.8 50.7 0.0 23.6 0.0 0.0 0.0 23.6 23.6 23.6 0.0 0.0 23.9 - 10.45 51.08 1979 0.0 0.0 23.6 23.6 23.6 23.6 23.6 23.6 0.0 0.0 56.4 60.8 50.7 0.0 23.6 0.0 0.0 0.0 23.6 23.6 23.6 0.0 0.0 23.9 - 10.45 51.08 1980 0.0 0.0 23.6 23.6 23.6 23.6 23.6 23.6 0.0 0.0 56.4 60.8 50.7 0.0 23.6 0.0 0.0 0.0 23.6 23.6 23.6 0.0 0.0 23.8 - 10.45 51.08 1981 0.0 0.0 23.6 23.6 23.6 23.6 23.6 23.6 0.0 0.0 0.0 60.8 50.7 0.0 23.6 0.0 0.0 0.0 23.6 23.6 23.6 0.0 0.0 23.8 - 10.45 51.08 1982 0.0 0.0 23.6 23.6 23.6 23.6 23.6 23.6 0.0 0.0 0.0 60.8 50.7 0.0 23.6 0.0 0.0 0.0 23.6 23.6 23.6 0.0 0.0 23.8 - 10.45 51.08 1983 0.0 0.0 23.6 23.6 23.6 23.6 23.6 23.6 0.0 0.0 0.0 60.8 50.7 0.0 23.6 0.0 0.0 0.0 23.6 23.6 23.6 0.0 0.0 23.7 - 10.45 51.08 1984 0.0 0.0 23.6 23.6 23.6 23.6 23.6 23.6 0.0 0.0 0.0 60.8 50.7 0.0 23.6 0.0 0.0 0.0 23.6 23.6 23.6 0.0 0.0 23.7 - 10.45 51.08 1985 0.0 0.0 23.6 23.6 23.6 23.6 23.6 23.6 0.0 0.0 0.0 60.8 50.7 0.0 23.6 0.0 0.0 0.0 23.6 23.6 23.6 0.0 0.0 23.7 - 10.45 51.08 1986 0.0 0.0 23.6 23.6 23.6 23.6 23.6 23.6 0.0 0.0 0.0 60.8 50.7 0.0 23.6 0.0 0.0 0.0 23.6 23.6 23.6 0.0 0.0 23.7 - 10.45 51.08 1987 0.0 0.0 23.6 23.6 23.6 23.6 23.6 23.6 0.0 0.0 0.0 60.8 0.0 0.0 0.0 0.0 0.0 0.0 23.6 23.6 23.6 0.0 0.0 23.6 - 10.45 51.08 1988 0.0 0.0 23.6 23.6 23.6 23.6 23.6 23.6 0.0 0.0 0.0 60.8 0.0 0.0 0.0 0.0 0.0 0.0 23.6 23.6 23.6 0.0 0.0 23.6 - 10.45 51.08 1989 0.0 0.0 23.6 23.6 23.6 0.0 23.6 23.6 0.0 0.0 0.0 60.8 0.0 0.0 0.0 0.0 0.0 0.0 23.6 23.6 23.6 0.0 0.0 23.6 - 10.45 51.08 1990 0.0 0.0 23.6 23.6 23.6 0.0 23.6 23.6 0.0 0.0 0.0 60.8 0.0 0.0 0.0 0.0 0.0 0.0 23.6 23.6 23.6 0.0 0.0 23.6 - 10.45 51.08 1991 0.0 0.0 23.6 23.6 23.6 0.0 23.6 23.6 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 23.6 23.6 23.6 0.0 0.0 23.6 - 10.45 51.08 1992 0.0 0.0 23.6 23.6 23.6 0.0 23.6 23.6 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 23.6 23.6 23.6 0.0 0.0 23.6 - 10.45 51.08 1993 0.0 0.0 23.6 23.6 23.6 0.0 23.6 23.6 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 23.6 23.6 23.6 0.0 0.0 23.6 - 10.45 51.08 1994 0.0 0.0 23.6 23.6 23.6 0.0 23.6 23.6 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 23.6 23.6 23.6 0.0 0.0 23.6 - 10.45 51.08 1995 0.0 0.0 23.6 23.6 23.6 0.0 23.6 23.6 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 23.6 23.6 23.6 0.0 0.0 23.6 - 10.45 51.08 1996 0.0 0.0 23.6 23.6 23.6 0.0 23.6 23.6 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 23.6 23.6 23.6 0.0 0.0 23.6 - 10.45 51.08 1997 0.0 0.0 23.6 23.6 23.6 0.0 23.6 23.6 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 23.6 23.6 23.6 0.0 0.0 23.6 - 10.45 51.08 1998 0.0 0.0 23.6 23.6 23.6 0.0 23.6 23.6 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 23.6 23.6 23.6 0.0 0.0 23.6 - 10.45 51.08 1999 0.0 0.0 23.6 23.6 23.6 0.0 23.6 23.6 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 23.6 23.6 23.6 0.0 0.0 23.6 - 10.45 51.08 2000 0.0 0.0 23.6 23.6 23.6 0.0 23.6 23.6 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 23.6 23.6 23.6 0.0 0.0 23.6 - 10.45 51.08 2001 0.0 0.0 23.6 23.6 23.6 0.0 23.6 23.6 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 23.6 23.6 23.6 0.0 0.0 23.6 - 10.45 51.08 2002 0.0 0.0 23.6 23.6 23.6 0.0 23.6 23.6 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 23.6 23.6 23.6 0.0 0.0 23.6 - 10.45 51.08 2003 0.0 0.0 23.6 23.6 23.6 0.0 23.6 23.6 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 23.6 23.6 23.6 0.0 0.0 23.6 - 10.45 51.08 2004 0.0 0.0 23.6 23.6 23.6 0.0 23.6 23.6 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 23.6 23.6 23.6 0.0 0.0 23.6 - 10.45 51.08 2005 0.0 0.0 23.6 23.6 23.6 0.0 23.6 23.6 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 23.6 23.6 23.6 0.0 0.0 23.6 - 10.45 51.08 2006 0.0 0.0 0.0 23.6 23.6 0.0 23.6 23.6 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 23.6 23.6 23.6 0.0 0.0 23.6 - 10.45 51.08 2007 0.0 0.0 0.0 23.6 23.6 0.0 23.6 23.6 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 23.6 23.6 23.6 0.0 0.0 23.6 - 10.45 51.08 2008 0.0 0.0 0.0 23.6 23.6 0.0 23.6 23.6 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 23.6 23.6 23.6 0.0 0.0 23.6 - 10.45 51.08 2009 0.0 0.0 0.0 23.6 23.6 0.0 23.6 23.6 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 23.6 23.6 23.6 0.0 0.0 23.6 - 10.45 51.08 2010 0.0 0.0 0.0 23.6 23.6 0.0 23.6 23.6 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 23.6 23.6 23.6 0.0 0.0 23.6 - 10.45 51.08 2011 0.0 0.0 0.0 23.6 23.6 0.0 23.6 23.6 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 23.6 23.6 23.6 0.0 0.0 23.6 - 10.45 51.08 2012 0.0 0.0 0.0 23.6 23.6 0.0 23.6 23.6 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 23.6 23.6 23.6 0.0 0.0 23.6 diff --git a/rLPJGUESS/inst/extdata/outputsForTests/run_patcharea/outDirectory/dens.out b/rLPJGUESS/inst/extdata/outputsForTests/run_patcharea/outDirectory/dens.out deleted file mode 100644 index dd5f833..0000000 --- a/rLPJGUESS/inst/extdata/outputsForTests/run_patcharea/outDirectory/dens.out +++ /dev/null @@ -1,63 +0,0 @@ - Lon Lat Year Abi_alb BES Bet_pen Bet_pub Car_bet Cor_ave Fag_syl Fra_exc Jun_oxy MRS Pic_abi Pic_sit Pin_syl Pin_hal Pop_tre Que_coc Que_ile Que_pub Que_rob Til_cor Ulm_gla C3_gr C4_gr Total - 10.45 51.08 1951 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0100 0.0040 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0140 - 10.45 51.08 1952 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0100 0.0020 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0120 - 10.45 51.08 1953 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0100 0.0020 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0120 - 10.45 51.08 1954 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0100 0.0020 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0120 - 10.45 51.08 1955 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0100 0.0020 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0120 - 10.45 51.08 1956 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0100 0.0020 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0120 - 10.45 51.08 1957 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 - 10.45 51.08 1958 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 - 10.45 51.08 1959 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 - 10.45 51.08 1960 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 - 10.45 51.08 1961 0.0000 0.0460 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0460 - 10.45 51.08 1962 0.0000 0.0460 0.0000 0.0300 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0760 - 10.45 51.08 1963 0.0000 0.0460 0.0340 0.0300 0.0320 0.0380 0.0120 0.0340 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0340 0.0000 0.0000 0.0000 0.0480 0.0220 0.0420 0.0000 0.0000 0.3720 - 10.45 51.08 1964 0.0000 0.0460 0.0360 0.0320 0.0340 0.0400 0.0140 0.0360 0.0000 0.0000 0.0120 0.0000 0.0380 0.0000 0.0340 0.0000 0.0000 0.0000 0.0480 0.0260 0.0440 0.0000 0.0000 0.4400 - 10.45 51.08 1965 0.0000 0.0460 0.0360 0.0300 0.0340 0.0400 0.0140 0.0360 0.0000 0.0000 0.0120 0.0340 0.0380 0.0000 0.0340 0.0000 0.0000 0.0000 0.0480 0.0260 0.0440 0.0000 0.0000 0.4720 - 10.45 51.08 1966 0.0000 0.0460 0.0360 0.0300 0.0340 0.0400 0.0140 0.0360 0.0000 0.0000 0.0120 0.0340 0.0380 0.0000 0.0340 0.0000 0.0000 0.0000 0.0480 0.0240 0.0440 0.0000 0.0000 0.4700 - 10.45 51.08 1967 0.0000 0.0460 0.0360 0.0300 0.0340 0.0400 0.0140 0.0360 0.0000 0.0000 0.0120 0.0340 0.0380 0.0000 0.0340 0.0000 0.0000 0.0000 0.0480 0.0240 0.0440 0.0000 0.0000 0.4700 - 10.45 51.08 1968 0.0000 0.0460 0.0360 0.0300 0.0340 0.0400 0.0140 0.0360 0.0000 0.0000 0.0120 0.0340 0.0380 0.0000 0.0340 0.0000 0.0000 0.0000 0.0480 0.0240 0.0440 0.0000 0.0000 0.4700 - 10.45 51.08 1969 0.0000 0.0400 0.0360 0.0300 0.0340 0.0400 0.0140 0.0360 0.0000 0.0000 0.0120 0.0340 0.0380 0.0000 0.0340 0.0000 0.0000 0.0000 0.0480 0.0240 0.0440 0.0000 0.0000 0.4640 - 10.45 51.08 1970 0.0000 0.0360 0.0340 0.0300 0.0340 0.0380 0.0140 0.0360 0.0000 0.0000 0.0120 0.0340 0.0380 0.0000 0.0320 0.0000 0.0000 0.0000 0.0480 0.0220 0.0440 0.0000 0.0000 0.4520 - 10.45 51.08 1971 0.0000 0.0280 0.0300 0.0300 0.0340 0.0360 0.0140 0.0360 0.0000 0.0000 0.0120 0.0340 0.0380 0.0000 0.0300 0.0000 0.0000 0.0000 0.0480 0.0220 0.0400 0.0000 0.0000 0.4320 - 10.45 51.08 1972 0.0000 0.0160 0.0300 0.0300 0.0340 0.0340 0.0140 0.0360 0.0000 0.0000 0.0120 0.0340 0.0380 0.0000 0.0260 0.0000 0.0000 0.0000 0.0460 0.0220 0.0400 0.0000 0.0000 0.4120 - 10.45 51.08 1973 0.0000 0.0160 0.0300 0.0300 0.0340 0.0320 0.0140 0.0360 0.0000 0.0000 0.0120 0.0340 0.0380 0.0000 0.0220 0.0000 0.0000 0.0000 0.0460 0.0220 0.0380 0.0000 0.0000 0.4040 - 10.45 51.08 1974 0.0000 0.0140 0.0240 0.0280 0.0340 0.0320 0.0140 0.0360 0.0000 0.0000 0.0120 0.0340 0.0380 0.0000 0.0180 0.0000 0.0000 0.0000 0.0460 0.0220 0.0380 0.0000 0.0000 0.3900 - 10.45 51.08 1975 0.0000 0.0100 0.0220 0.0280 0.0340 0.0280 0.0140 0.0360 0.0000 0.0000 0.0120 0.0320 0.0360 0.0000 0.0160 0.0000 0.0000 0.0000 0.0460 0.0200 0.0320 0.0000 0.0000 0.3660 - 10.45 51.08 1976 0.0000 0.0000 0.0220 0.0280 0.0340 0.0240 0.0140 0.0360 0.0000 0.0000 0.0120 0.0000 0.0360 0.0000 0.0140 0.0000 0.0000 0.0000 0.0460 0.0180 0.0320 0.0000 0.0000 0.3160 - 10.45 51.08 1977 0.0000 0.0000 0.0200 0.0280 0.0320 0.0240 0.0140 0.0360 0.0000 0.0000 0.0120 0.0000 0.0360 0.0000 0.0140 0.0000 0.0000 0.0000 0.0460 0.0180 0.0320 0.0000 0.0000 0.3120 - 10.45 51.08 1978 0.0000 0.0000 0.0200 0.0260 0.0320 0.0240 0.0140 0.0360 0.0000 0.0000 0.0120 0.0000 0.0360 0.0000 0.0120 0.0000 0.0000 0.0000 0.0460 0.0180 0.0320 0.0000 0.0000 0.3080 - 10.45 51.08 1979 0.0000 0.0000 0.0160 0.0260 0.0320 0.0220 0.0140 0.0320 0.0000 0.0000 0.0120 0.0000 0.0360 0.0000 0.0120 0.0000 0.0000 0.0000 0.0460 0.0180 0.0300 0.0000 0.0000 0.2960 - 10.45 51.08 1980 0.0000 0.0000 0.0140 0.0260 0.0320 0.0200 0.0140 0.0320 0.0000 0.0000 0.0120 0.0000 0.0340 0.0000 0.0100 0.0000 0.0000 0.0000 0.0460 0.0160 0.0300 0.0000 0.0000 0.2860 - 10.45 51.08 1981 0.0000 0.0000 0.0140 0.0240 0.0320 0.0180 0.0140 0.0300 0.0000 0.0000 0.0000 0.0000 0.0340 0.0000 0.0100 0.0000 0.0000 0.0000 0.0460 0.0160 0.0300 0.0000 0.0000 0.2680 - 10.45 51.08 1982 0.0000 0.0000 0.0140 0.0240 0.0320 0.0160 0.0120 0.0280 0.0000 0.0000 0.0000 0.0000 0.0340 0.0000 0.0080 0.0000 0.0000 0.0000 0.0460 0.0160 0.0300 0.0000 0.0000 0.2600 - 10.45 51.08 1983 0.0000 0.0000 0.0120 0.0240 0.0320 0.0140 0.0120 0.0280 0.0000 0.0000 0.0000 0.0000 0.0340 0.0000 0.0060 0.0000 0.0000 0.0000 0.0460 0.0140 0.0260 0.0000 0.0000 0.2480 - 10.45 51.08 1984 0.0000 0.0000 0.0100 0.0240 0.0320 0.0140 0.0120 0.0280 0.0000 0.0000 0.0000 0.0000 0.0320 0.0000 0.0060 0.0000 0.0000 0.0000 0.0440 0.0140 0.0260 0.0000 0.0000 0.2420 - 10.45 51.08 1985 0.0000 0.0000 0.0100 0.0240 0.0320 0.0080 0.0120 0.0240 0.0000 0.0000 0.0000 0.0000 0.0320 0.0000 0.0020 0.0000 0.0000 0.0000 0.0420 0.0140 0.0260 0.0000 0.0000 0.2260 - 10.45 51.08 1986 0.0000 0.0000 0.0100 0.0240 0.0300 0.0080 0.0120 0.0240 0.0000 0.0000 0.0000 0.0000 0.0320 0.0000 0.0020 0.0000 0.0000 0.0000 0.0420 0.0140 0.0240 0.0000 0.0000 0.2220 - 10.45 51.08 1987 0.0000 0.0000 0.0100 0.0240 0.0300 0.0060 0.0120 0.0240 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0420 0.0140 0.0240 0.0000 0.0000 0.1860 - 10.45 51.08 1988 0.0000 0.0000 0.0100 0.0240 0.0280 0.0060 0.0120 0.0220 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0400 0.0120 0.0240 0.0000 0.0000 0.1780 - 10.45 51.08 1989 0.0000 0.0000 0.0100 0.0240 0.0280 0.0000 0.0120 0.0220 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0380 0.0120 0.0240 0.0000 0.0000 0.1700 - 10.45 51.08 1990 0.0000 0.0000 0.0100 0.0240 0.0260 0.0000 0.0120 0.0220 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0380 0.0120 0.0240 0.0000 0.0000 0.1680 - 10.45 51.08 1991 0.0000 0.0000 0.0100 0.0220 0.0260 0.0000 0.0120 0.0200 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0380 0.0120 0.0240 0.0000 0.0000 0.1640 - 10.45 51.08 1992 0.0000 0.0000 0.0080 0.0220 0.0260 0.0000 0.0120 0.0180 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0380 0.0100 0.0240 0.0000 0.0000 0.1580 - 10.45 51.08 1993 0.0000 0.0000 0.0080 0.0200 0.0260 0.0000 0.0120 0.0180 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0360 0.0100 0.0240 0.0000 0.0000 0.1540 - 10.45 51.08 1994 0.0000 0.0000 0.0080 0.0200 0.0260 0.0000 0.0120 0.0180 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0340 0.0080 0.0240 0.0000 0.0000 0.1500 - 10.45 51.08 1995 0.0000 0.0000 0.0060 0.0200 0.0260 0.0000 0.0120 0.0180 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0340 0.0080 0.0240 0.0000 0.0000 0.1480 - 10.45 51.08 1996 0.0000 0.0000 0.0060 0.0200 0.0260 0.0000 0.0120 0.0180 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0340 0.0060 0.0240 0.0000 0.0000 0.1460 - 10.45 51.08 1997 0.0000 0.0000 0.0060 0.0200 0.0240 0.0000 0.0120 0.0180 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0340 0.0060 0.0240 0.0000 0.0000 0.1440 - 10.45 51.08 1998 0.0000 0.0000 0.0060 0.0200 0.0240 0.0000 0.0120 0.0180 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0320 0.0060 0.0240 0.0000 0.0000 0.1420 - 10.45 51.08 1999 0.0000 0.0000 0.0060 0.0200 0.0240 0.0000 0.0120 0.0180 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0320 0.0060 0.0240 0.0000 0.0000 0.1420 - 10.45 51.08 2000 0.0000 0.0000 0.0040 0.0200 0.0240 0.0000 0.0120 0.0180 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0320 0.0060 0.0240 0.0000 0.0000 0.1400 - 10.45 51.08 2001 0.0000 0.0000 0.0040 0.0200 0.0220 0.0000 0.0120 0.0180 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0300 0.0060 0.0240 0.0000 0.0000 0.1360 - 10.45 51.08 2002 0.0000 0.0000 0.0020 0.0200 0.0220 0.0000 0.0120 0.0180 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0300 0.0060 0.0220 0.0000 0.0000 0.1320 - 10.45 51.08 2003 0.0000 0.0000 0.0020 0.0200 0.0200 0.0000 0.0120 0.0180 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0300 0.0060 0.0220 0.0000 0.0000 0.1300 - 10.45 51.08 2004 0.0000 0.0000 0.0020 0.0200 0.0180 0.0000 0.0120 0.0180 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0260 0.0060 0.0220 0.0000 0.0000 0.1240 - 10.45 51.08 2005 0.0000 0.0000 0.0020 0.0200 0.0180 0.0000 0.0120 0.0180 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0260 0.0060 0.0220 0.0000 0.0000 0.1240 - 10.45 51.08 2006 0.0000 0.0000 0.0000 0.0200 0.0180 0.0000 0.0120 0.0180 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0260 0.0060 0.0200 0.0000 0.0000 0.1200 - 10.45 51.08 2007 0.0000 0.0000 0.0000 0.0200 0.0180 0.0000 0.0120 0.0180 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0260 0.0060 0.0200 0.0000 0.0000 0.1200 - 10.45 51.08 2008 0.0000 0.0000 0.0000 0.0180 0.0140 0.0000 0.0120 0.0160 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0260 0.0060 0.0200 0.0000 0.0000 0.1120 - 10.45 51.08 2009 0.0000 0.0000 0.0000 0.0180 0.0140 0.0000 0.0120 0.0160 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0240 0.0060 0.0200 0.0000 0.0000 0.1100 - 10.45 51.08 2010 0.0000 0.0000 0.0000 0.0180 0.0140 0.0000 0.0120 0.0140 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0220 0.0060 0.0200 0.0000 0.0000 0.1060 - 10.45 51.08 2011 0.0000 0.0000 0.0000 0.0180 0.0140 0.0000 0.0120 0.0140 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0220 0.0040 0.0200 0.0000 0.0000 0.1040 - 10.45 51.08 2012 0.0000 0.0000 0.0000 0.0180 0.0140 0.0000 0.0120 0.0140 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0220 0.0040 0.0200 0.0000 0.0000 0.1040 diff --git a/rLPJGUESS/inst/extdata/outputsForTests/run_patcharea/outDirectory/firert.out b/rLPJGUESS/inst/extdata/outputsForTests/run_patcharea/outDirectory/firert.out deleted file mode 100644 index fa07faa..0000000 --- a/rLPJGUESS/inst/extdata/outputsForTests/run_patcharea/outDirectory/firert.out +++ /dev/null @@ -1,63 +0,0 @@ - Lon Lat Year FireRT - 10.45 51.08 1951 1000.0 - 10.45 51.08 1952 193.7 - 10.45 51.08 1953 1000.0 - 10.45 51.08 1954 1000.0 - 10.45 51.08 1955 1000.0 - 10.45 51.08 1956 1000.0 - 10.45 51.08 1957 1000.0 - 10.45 51.08 1958 1000.0 - 10.45 51.08 1959 1000.0 - 10.45 51.08 1960 1000.0 - 10.45 51.08 1961 1000.0 - 10.45 51.08 1962 106.1 - 10.45 51.08 1963 172.4 - 10.45 51.08 1964 117.8 - 10.45 51.08 1965 1000.0 - 10.45 51.08 1966 1000.0 - 10.45 51.08 1967 435.9 - 10.45 51.08 1968 139.2 - 10.45 51.08 1969 183.0 - 10.45 51.08 1970 159.7 - 10.45 51.08 1971 116.2 - 10.45 51.08 1972 1000.0 - 10.45 51.08 1973 117.4 - 10.45 51.08 1974 305.7 - 10.45 51.08 1975 122.7 - 10.45 51.08 1976 111.6 - 10.45 51.08 1977 259.4 - 10.45 51.08 1978 129.9 - 10.45 51.08 1979 126.7 - 10.45 51.08 1980 118.1 - 10.45 51.08 1981 490.3 - 10.45 51.08 1982 106.7 - 10.45 51.08 1983 107.0 - 10.45 51.08 1984 1000.0 - 10.45 51.08 1985 80.9 - 10.45 51.08 1986 143.2 - 10.45 51.08 1987 1000.0 - 10.45 51.08 1988 95.6 - 10.45 51.08 1989 115.2 - 10.45 51.08 1990 118.1 - 10.45 51.08 1991 97.1 - 10.45 51.08 1992 122.0 - 10.45 51.08 1993 231.3 - 10.45 51.08 1994 642.3 - 10.45 51.08 1995 1000.0 - 10.45 51.08 1996 1000.0 - 10.45 51.08 1997 124.0 - 10.45 51.08 1998 158.6 - 10.45 51.08 1999 173.6 - 10.45 51.08 2000 120.1 - 10.45 51.08 2001 171.2 - 10.45 51.08 2002 1000.0 - 10.45 51.08 2003 119.0 - 10.45 51.08 2004 118.3 - 10.45 51.08 2005 119.9 - 10.45 51.08 2006 154.1 - 10.45 51.08 2007 318.3 - 10.45 51.08 2008 118.1 - 10.45 51.08 2009 235.2 - 10.45 51.08 2010 262.4 - 10.45 51.08 2011 134.3 - 10.45 51.08 2012 123.0 diff --git a/rLPJGUESS/inst/extdata/outputsForTests/run_patcharea/outDirectory/fpc.out b/rLPJGUESS/inst/extdata/outputsForTests/run_patcharea/outDirectory/fpc.out deleted file mode 100644 index 21e185f..0000000 --- a/rLPJGUESS/inst/extdata/outputsForTests/run_patcharea/outDirectory/fpc.out +++ /dev/null @@ -1,63 +0,0 @@ - Lon Lat Year Abi_alb BES Bet_pen Bet_pub Car_bet Cor_ave Fag_syl Fra_exc Jun_oxy MRS Pic_abi Pic_sit Pin_syl Pin_hal Pop_tre Que_coc Que_ile Que_pub Que_rob Til_cor Ulm_gla C3_gr C4_gr Total - 10.45 51.08 1951 0.000 0.000 0.000 0.000 0.000 0.000 0.391 0.004 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.395 - 10.45 51.08 1952 0.000 0.000 0.000 0.000 0.000 0.000 0.391 0.002 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.393 - 10.45 51.08 1953 0.000 0.000 0.000 0.000 0.000 0.000 0.391 0.002 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.393 - 10.45 51.08 1954 0.000 0.000 0.000 0.000 0.000 0.000 0.391 0.002 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.393 - 10.45 51.08 1955 0.000 0.000 0.000 0.000 0.000 0.000 0.391 0.001 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.392 - 10.45 51.08 1956 0.000 0.000 0.000 0.000 0.000 0.000 0.390 0.001 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.392 - 10.45 51.08 1957 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1958 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1959 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1960 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1961 0.000 0.005 0.015 0.014 0.014 0.015 0.005 0.015 0.000 0.000 0.002 0.006 0.008 0.000 0.015 0.000 0.000 0.000 0.021 0.009 0.018 0.741 0.000 0.903 - 10.45 51.08 1962 0.000 0.007 0.026 0.026 0.025 0.025 0.010 0.026 0.000 0.000 0.003 0.009 0.012 0.000 0.025 0.000 0.000 0.000 0.036 0.017 0.032 0.659 0.000 0.938 - 10.45 51.08 1963 0.000 0.010 0.042 0.043 0.039 0.038 0.016 0.042 0.000 0.000 0.005 0.012 0.017 0.000 0.040 0.000 0.000 0.000 0.058 0.028 0.052 0.464 0.000 0.903 - 10.45 51.08 1964 0.000 0.011 0.059 0.063 0.056 0.052 0.022 0.060 0.000 0.000 0.006 0.015 0.021 0.000 0.056 0.000 0.000 0.000 0.082 0.039 0.074 0.199 0.000 0.815 - 10.45 51.08 1965 0.000 0.012 0.074 0.076 0.071 0.063 0.028 0.076 0.000 0.000 0.007 0.018 0.025 0.000 0.070 0.000 0.000 0.000 0.104 0.049 0.093 0.000 0.000 0.765 - 10.45 51.08 1966 0.000 0.013 0.089 0.095 0.086 0.072 0.034 0.092 0.000 0.000 0.008 0.019 0.027 0.000 0.085 0.000 0.000 0.000 0.126 0.057 0.113 0.000 0.000 0.915 - 10.45 51.08 1967 0.000 0.013 0.101 0.112 0.098 0.078 0.039 0.105 0.000 0.000 0.008 0.020 0.028 0.000 0.096 0.000 0.000 0.000 0.144 0.064 0.129 0.000 0.000 1.034 - 10.45 51.08 1968 0.000 0.012 0.110 0.128 0.107 0.081 0.043 0.115 0.000 0.000 0.008 0.019 0.028 0.000 0.104 0.000 0.000 0.000 0.158 0.069 0.141 0.000 0.000 1.124 - 10.45 51.08 1969 0.000 0.010 0.116 0.141 0.114 0.081 0.047 0.123 0.000 0.000 0.008 0.018 0.027 0.000 0.109 0.000 0.000 0.000 0.169 0.073 0.151 0.000 0.000 1.187 - 10.45 51.08 1970 0.000 0.009 0.114 0.153 0.120 0.076 0.049 0.129 0.000 0.000 0.008 0.017 0.025 0.000 0.106 0.000 0.000 0.000 0.179 0.069 0.159 0.000 0.000 1.214 - 10.45 51.08 1971 0.000 0.007 0.105 0.160 0.122 0.068 0.050 0.131 0.000 0.000 0.007 0.015 0.024 0.000 0.099 0.000 0.000 0.000 0.181 0.068 0.146 0.000 0.000 1.184 - 10.45 51.08 1972 0.000 0.004 0.110 0.176 0.128 0.063 0.053 0.138 0.000 0.000 0.007 0.014 0.023 0.000 0.089 0.000 0.000 0.000 0.184 0.071 0.154 0.000 0.000 1.215 - 10.45 51.08 1973 0.000 0.003 0.108 0.182 0.127 0.055 0.053 0.138 0.000 0.000 0.007 0.011 0.022 0.000 0.073 0.000 0.000 0.000 0.183 0.069 0.146 0.000 0.000 1.177 - 10.45 51.08 1974 0.000 0.002 0.091 0.187 0.135 0.054 0.057 0.146 0.000 0.000 0.006 0.009 0.021 0.000 0.063 0.000 0.000 0.000 0.195 0.072 0.154 0.000 0.000 1.191 - 10.45 51.08 1975 0.000 0.001 0.085 0.202 0.139 0.047 0.059 0.151 0.000 0.000 0.006 0.006 0.018 0.000 0.056 0.000 0.000 0.000 0.202 0.071 0.134 0.000 0.000 1.178 - 10.45 51.08 1976 0.000 0.000 0.080 0.202 0.134 0.036 0.058 0.146 0.000 0.000 0.004 0.004 0.016 0.000 0.047 0.000 0.000 0.000 0.195 0.061 0.129 0.000 0.000 1.113 - 10.45 51.08 1977 0.000 0.000 0.076 0.222 0.139 0.034 0.061 0.154 0.000 0.000 0.004 0.003 0.015 0.000 0.048 0.000 0.000 0.000 0.206 0.064 0.136 0.000 0.000 1.162 - 10.45 51.08 1978 0.000 0.000 0.078 0.238 0.144 0.032 0.064 0.160 0.000 0.000 0.003 0.001 0.014 0.000 0.042 0.000 0.000 0.000 0.214 0.066 0.141 0.000 0.000 1.198 - 10.45 51.08 1979 0.000 0.000 0.062 0.255 0.148 0.028 0.066 0.153 0.000 0.000 0.002 0.001 0.013 0.000 0.042 0.000 0.000 0.000 0.220 0.066 0.135 0.000 0.000 1.191 - 10.45 51.08 1980 0.000 0.000 0.053 0.267 0.148 0.022 0.067 0.154 0.000 0.000 0.002 0.000 0.011 0.000 0.034 0.000 0.000 0.000 0.222 0.058 0.136 0.000 0.000 1.175 - 10.45 51.08 1981 0.000 0.000 0.054 0.267 0.153 0.019 0.070 0.150 0.000 0.000 0.000 0.000 0.010 0.000 0.034 0.000 0.000 0.000 0.230 0.059 0.141 0.000 0.000 1.188 - 10.45 51.08 1982 0.000 0.000 0.050 0.267 0.146 0.014 0.068 0.134 0.000 0.000 0.000 0.000 0.008 0.000 0.025 0.000 0.000 0.000 0.220 0.055 0.134 0.000 0.000 1.123 - 10.45 51.08 1983 0.000 0.000 0.042 0.282 0.149 0.011 0.071 0.137 0.000 0.000 0.000 0.000 0.006 0.000 0.019 0.000 0.000 0.000 0.225 0.048 0.127 0.000 0.000 1.116 - 10.45 51.08 1984 0.000 0.000 0.035 0.300 0.151 0.009 0.073 0.140 0.000 0.000 0.000 0.000 0.005 0.000 0.018 0.000 0.000 0.000 0.220 0.048 0.130 0.000 0.000 1.129 - 10.45 51.08 1985 0.000 0.000 0.035 0.316 0.153 0.005 0.076 0.122 0.000 0.000 0.000 0.000 0.003 0.000 0.006 0.000 0.000 0.000 0.213 0.047 0.132 0.000 0.000 1.109 - 10.45 51.08 1986 0.000 0.000 0.035 0.339 0.149 0.004 0.080 0.126 0.000 0.000 0.000 0.000 0.002 0.000 0.006 0.000 0.000 0.000 0.221 0.048 0.126 0.000 0.000 1.136 - 10.45 51.08 1987 0.000 0.000 0.035 0.362 0.152 0.002 0.083 0.129 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.226 0.047 0.129 0.000 0.000 1.167 - 10.45 51.08 1988 0.000 0.000 0.033 0.374 0.139 0.001 0.084 0.118 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.214 0.039 0.128 0.000 0.000 1.129 - 10.45 51.08 1989 0.000 0.000 0.031 0.385 0.136 0.000 0.084 0.116 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.200 0.037 0.126 0.000 0.000 1.114 - 10.45 51.08 1990 0.000 0.000 0.031 0.407 0.127 0.000 0.087 0.117 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.203 0.036 0.128 0.000 0.000 1.136 - 10.45 51.08 1991 0.000 0.000 0.028 0.380 0.121 0.000 0.086 0.102 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.194 0.034 0.123 0.000 0.000 1.068 - 10.45 51.08 1992 0.000 0.000 0.021 0.395 0.120 0.000 0.088 0.092 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.194 0.027 0.123 0.000 0.000 1.061 - 10.45 51.08 1993 0.000 0.000 0.022 0.384 0.125 0.000 0.093 0.096 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.191 0.027 0.128 0.000 0.000 1.065 - 10.45 51.08 1994 0.000 0.000 0.022 0.410 0.129 0.000 0.097 0.099 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.187 0.022 0.132 0.000 0.000 1.097 - 10.45 51.08 1995 0.000 0.000 0.016 0.433 0.130 0.000 0.101 0.101 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.190 0.022 0.134 0.000 0.000 1.127 - 10.45 51.08 1996 0.000 0.000 0.016 0.452 0.130 0.000 0.103 0.101 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.190 0.016 0.134 0.000 0.000 1.141 - 10.45 51.08 1997 0.000 0.000 0.015 0.473 0.119 0.000 0.106 0.101 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.190 0.015 0.134 0.000 0.000 1.154 - 10.45 51.08 1998 0.000 0.000 0.014 0.490 0.117 0.000 0.107 0.100 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.177 0.015 0.133 0.000 0.000 1.152 - 10.45 51.08 1999 0.000 0.000 0.014 0.514 0.117 0.000 0.110 0.100 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.178 0.014 0.133 0.000 0.000 1.180 - 10.45 51.08 2000 0.000 0.000 0.009 0.530 0.114 0.000 0.111 0.098 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.174 0.013 0.130 0.000 0.000 1.179 - 10.45 51.08 2001 0.000 0.000 0.008 0.547 0.102 0.000 0.112 0.096 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.160 0.013 0.128 0.000 0.000 1.167 - 10.45 51.08 2002 0.000 0.000 0.004 0.564 0.099 0.000 0.113 0.094 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.157 0.012 0.115 0.000 0.000 1.159 - 10.45 51.08 2003 0.000 0.000 0.003 0.570 0.086 0.000 0.112 0.090 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.150 0.011 0.110 0.000 0.000 1.132 - 10.45 51.08 2004 0.000 0.000 0.003 0.584 0.075 0.000 0.113 0.088 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.127 0.010 0.107 0.000 0.000 1.107 - 10.45 51.08 2005 0.000 0.000 0.003 0.605 0.073 0.000 0.115 0.086 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.124 0.010 0.105 0.000 0.000 1.120 - 10.45 51.08 2006 0.000 0.000 0.000 0.622 0.072 0.000 0.116 0.085 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.123 0.009 0.094 0.000 0.000 1.121 - 10.45 51.08 2007 0.000 0.000 0.000 0.645 0.070 0.000 0.118 0.085 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.123 0.009 0.094 0.000 0.000 1.144 - 10.45 51.08 2008 0.000 0.000 0.000 0.589 0.052 0.000 0.118 0.072 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.117 0.008 0.090 0.000 0.000 1.046 - 10.45 51.08 2009 0.000 0.000 0.000 0.605 0.051 0.000 0.120 0.072 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.108 0.008 0.090 0.000 0.000 1.053 - 10.45 51.08 2010 0.000 0.000 0.000 0.611 0.051 0.000 0.122 0.062 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.098 0.007 0.089 0.000 0.000 1.040 - 10.45 51.08 2011 0.000 0.000 0.000 0.617 0.050 0.000 0.125 0.062 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.098 0.005 0.089 0.000 0.000 1.045 - 10.45 51.08 2012 0.000 0.000 0.000 0.622 0.049 0.000 0.126 0.061 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.095 0.005 0.087 0.000 0.000 1.044 diff --git a/rLPJGUESS/inst/extdata/outputsForTests/run_patcharea/outDirectory/lai.out b/rLPJGUESS/inst/extdata/outputsForTests/run_patcharea/outDirectory/lai.out deleted file mode 100644 index ea6e058..0000000 --- a/rLPJGUESS/inst/extdata/outputsForTests/run_patcharea/outDirectory/lai.out +++ /dev/null @@ -1,63 +0,0 @@ - Lon Lat Year Abi_alb BES Bet_pen Bet_pub Car_bet Cor_ave Fag_syl Fra_exc Jun_oxy MRS Pic_abi Pic_sit Pin_syl Pin_hal Pop_tre Que_coc Que_ile Que_pub Que_rob Til_cor Ulm_gla C3_gr C4_gr Total - 10.45 51.08 1951 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 3.0632 0.0078 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 3.0710 - 10.45 51.08 1952 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 3.0636 0.0037 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 3.0672 - 10.45 51.08 1953 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 3.0797 0.0035 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 3.0832 - 10.45 51.08 1954 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 3.0452 0.0033 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 3.0484 - 10.45 51.08 1955 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 3.0044 0.0031 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 3.0075 - 10.45 51.08 1956 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 2.9850 0.0029 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 2.9879 - 10.45 51.08 1957 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 - 10.45 51.08 1958 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 - 10.45 51.08 1959 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 - 10.45 51.08 1960 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 - 10.45 51.08 1961 0.0000 0.0313 0.0594 0.0581 0.0561 0.0526 0.0211 0.0598 0.0000 0.0000 0.0106 0.0286 0.0324 0.0000 0.0594 0.0000 0.0000 0.0000 0.0844 0.0386 0.0739 2.7008 0.0000 3.3672 - 10.45 51.08 1962 0.0000 0.0452 0.1124 0.1169 0.1070 0.0933 0.0423 0.1140 0.0000 0.0000 0.0167 0.0442 0.0493 0.0000 0.1079 0.0000 0.0000 0.0000 0.1571 0.0743 0.1401 2.1497 0.0000 3.3704 - 10.45 51.08 1963 0.0000 0.0605 0.1905 0.2041 0.1828 0.1489 0.0730 0.1948 0.0000 0.0000 0.0251 0.0654 0.0716 0.0000 0.1820 0.0000 0.0000 0.0000 0.2680 0.1263 0.2394 1.2475 0.0000 3.2799 - 10.45 51.08 1964 0.0000 0.0707 0.2824 0.3102 0.2733 0.2099 0.1104 0.2915 0.0000 0.0000 0.0326 0.0834 0.0914 0.0000 0.2668 0.0000 0.0000 0.0000 0.4008 0.1854 0.3583 0.4441 0.0000 3.4114 - 10.45 51.08 1965 0.0000 0.0772 0.3591 0.3860 0.3520 0.2565 0.1438 0.3757 0.0000 0.0000 0.0393 0.0987 0.1069 0.0000 0.3395 0.0000 0.0000 0.0000 0.5169 0.2385 0.4618 0.0000 0.0000 3.7518 - 10.45 51.08 1966 0.0000 0.0766 0.4368 0.4879 0.4334 0.2965 0.1790 0.4636 0.0000 0.0000 0.0421 0.1021 0.1131 0.0000 0.4135 0.0000 0.0000 0.0000 0.6388 0.2822 0.5701 0.0000 0.0000 4.5358 - 10.45 51.08 1967 0.0000 0.0744 0.4885 0.5793 0.4915 0.3175 0.2058 0.5279 0.0000 0.0000 0.0440 0.1017 0.1169 0.0000 0.4616 0.0000 0.0000 0.0000 0.7283 0.3177 0.6493 0.0000 0.0000 5.1044 - 10.45 51.08 1968 0.0000 0.0674 0.5214 0.6572 0.5336 0.3216 0.2269 0.5740 0.0000 0.0000 0.0417 0.0928 0.1106 0.0000 0.4906 0.0000 0.0000 0.0000 0.7934 0.3398 0.7062 0.0000 0.0000 5.4771 - 10.45 51.08 1969 0.0000 0.0513 0.5368 0.7138 0.5595 0.3127 0.2417 0.6029 0.0000 0.0000 0.0385 0.0814 0.1010 0.0000 0.4988 0.0000 0.0000 0.0000 0.8350 0.3477 0.7421 0.0000 0.0000 5.6632 - 10.45 51.08 1970 0.0000 0.0400 0.5115 0.7634 0.5770 0.2814 0.2533 0.6227 0.0000 0.0000 0.0355 0.0681 0.0919 0.0000 0.4718 0.0000 0.0000 0.0000 0.8641 0.3204 0.7668 0.0000 0.0000 5.6678 - 10.45 51.08 1971 0.0000 0.0265 0.4525 0.7743 0.5642 0.2387 0.2518 0.6104 0.0000 0.0000 0.0308 0.0509 0.0818 0.0000 0.4172 0.0000 0.0000 0.0000 0.8484 0.3014 0.6811 0.0000 0.0000 5.3299 - 10.45 51.08 1972 0.0000 0.0133 0.4632 0.8579 0.5872 0.2140 0.2668 0.6381 0.0000 0.0000 0.0288 0.0438 0.0763 0.0000 0.3682 0.0000 0.0000 0.0000 0.8514 0.3099 0.7122 0.0000 0.0000 5.4311 - 10.45 51.08 1973 0.0000 0.0103 0.4333 0.8564 0.5601 0.1756 0.2594 0.6100 0.0000 0.0000 0.0243 0.0303 0.0679 0.0000 0.2875 0.0000 0.0000 0.0000 0.8151 0.2889 0.6454 0.0000 0.0000 5.0647 - 10.45 51.08 1974 0.0000 0.0065 0.3602 0.8978 0.5914 0.1683 0.2782 0.6460 0.0000 0.0000 0.0225 0.0234 0.0623 0.0000 0.2433 0.0000 0.0000 0.0000 0.8645 0.3015 0.6836 0.0000 0.0000 5.1496 - 10.45 51.08 1975 0.0000 0.0026 0.3304 0.9640 0.6011 0.1426 0.2875 0.6605 0.0000 0.0000 0.0200 0.0154 0.0539 0.0000 0.2140 0.0000 0.0000 0.0000 0.8850 0.2939 0.5835 0.0000 0.0000 5.0543 - 10.45 51.08 1976 0.0000 0.0000 0.2936 0.9248 0.5471 0.1009 0.2664 0.6026 0.0000 0.0000 0.0122 0.0117 0.0443 0.0000 0.1651 0.0000 0.0000 0.0000 0.8092 0.2369 0.5322 0.0000 0.0000 4.5471 - 10.45 51.08 1977 0.0000 0.0000 0.2766 1.0382 0.5731 0.0956 0.2854 0.6367 0.0000 0.0000 0.0095 0.0066 0.0402 0.0000 0.1703 0.0000 0.0000 0.0000 0.8559 0.2471 0.5623 0.0000 0.0000 4.7975 - 10.45 51.08 1978 0.0000 0.0000 0.2794 1.1322 0.5913 0.0882 0.3005 0.6596 0.0000 0.0000 0.0074 0.0030 0.0367 0.0000 0.1465 0.0000 0.0000 0.0000 0.8874 0.2506 0.5824 0.0000 0.0000 4.9653 - 10.45 51.08 1979 0.0000 0.0000 0.2200 1.2110 0.5959 0.0728 0.3104 0.6259 0.0000 0.0000 0.0054 0.0023 0.0333 0.0000 0.1436 0.0000 0.0000 0.0000 0.8997 0.2482 0.5508 0.0000 0.0000 4.9194 - 10.45 51.08 1980 0.0000 0.0000 0.1822 1.2569 0.5838 0.0573 0.3118 0.6169 0.0000 0.0000 0.0035 0.0017 0.0285 0.0000 0.1129 0.0000 0.0000 0.0000 0.8868 0.2106 0.5420 0.0000 0.0000 4.7948 - 10.45 51.08 1981 0.0000 0.0000 0.1829 1.2783 0.6021 0.0469 0.3288 0.5988 0.0000 0.0000 0.0000 0.0009 0.0249 0.0000 0.1125 0.0000 0.0000 0.0000 0.9181 0.2134 0.5606 0.0000 0.0000 4.8682 - 10.45 51.08 1982 0.0000 0.0000 0.1587 1.2166 0.5434 0.0328 0.3052 0.5063 0.0000 0.0000 0.0000 0.0004 0.0199 0.0000 0.0766 0.0000 0.0000 0.0000 0.8317 0.1851 0.5067 0.0000 0.0000 4.3834 - 10.45 51.08 1983 0.0000 0.0000 0.1322 1.2883 0.5461 0.0245 0.3162 0.5133 0.0000 0.0000 0.0000 0.0002 0.0141 0.0000 0.0557 0.0000 0.0000 0.0000 0.8432 0.1575 0.4766 0.0000 0.0000 4.3680 - 10.45 51.08 1984 0.0000 0.0000 0.1083 1.3742 0.5519 0.0211 0.3287 0.5207 0.0000 0.0000 0.0000 0.0001 0.0110 0.0000 0.0541 0.0000 0.0000 0.0000 0.8182 0.1556 0.4835 0.0000 0.0000 4.4272 - 10.45 51.08 1985 0.0000 0.0000 0.1053 1.4535 0.5544 0.0101 0.3401 0.4502 0.0000 0.0000 0.0000 0.0001 0.0069 0.0000 0.0172 0.0000 0.0000 0.0000 0.7878 0.1513 0.4877 0.0000 0.0000 4.3647 - 10.45 51.08 1986 0.0000 0.0000 0.1060 1.5815 0.5384 0.0085 0.3611 0.4680 0.0000 0.0000 0.0000 0.0000 0.0040 0.0000 0.0171 0.0000 0.0000 0.0000 0.8190 0.1516 0.4680 0.0000 0.0000 4.5232 - 10.45 51.08 1987 0.0000 0.0000 0.1037 1.7116 0.5469 0.0044 0.3770 0.4774 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.8354 0.1489 0.4774 0.0000 0.0000 4.6827 - 10.45 51.08 1988 0.0000 0.0000 0.0952 1.7379 0.4895 0.0012 0.3756 0.4235 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.7700 0.1179 0.4620 0.0000 0.0000 4.4728 - 10.45 51.08 1989 0.0000 0.0000 0.0871 1.7552 0.4653 0.0000 0.3697 0.4052 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.6998 0.1088 0.4420 0.0000 0.0000 4.3331 - 10.45 51.08 1990 0.0000 0.0000 0.0840 1.8770 0.4305 0.0000 0.3829 0.4092 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.7069 0.1058 0.4464 0.0000 0.0000 4.4428 - 10.45 51.08 1991 0.0000 0.0000 0.0739 1.7116 0.3926 0.0000 0.3666 0.3431 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.6519 0.0943 0.4117 0.0000 0.0000 4.0458 - 10.45 51.08 1992 0.0000 0.0000 0.0560 1.7715 0.3851 0.0000 0.3760 0.3048 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.6435 0.0744 0.4064 0.0000 0.0000 4.0177 - 10.45 51.08 1993 0.0000 0.0000 0.0570 1.7552 0.4028 0.0000 0.4032 0.3201 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.6402 0.0757 0.4268 0.0000 0.0000 4.0809 - 10.45 51.08 1994 0.0000 0.0000 0.0575 1.9109 0.4170 0.0000 0.4283 0.3332 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.6294 0.0612 0.4443 0.0000 0.0000 4.2820 - 10.45 51.08 1995 0.0000 0.0000 0.0421 2.0383 0.4204 0.0000 0.4456 0.3391 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.6406 0.0599 0.4522 0.0000 0.0000 4.4382 - 10.45 51.08 1996 0.0000 0.0000 0.0401 2.1240 0.4136 0.0000 0.4530 0.3349 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.6326 0.0431 0.4465 0.0000 0.0000 4.4878 - 10.45 51.08 1997 0.0000 0.0000 0.0381 2.2332 0.3758 0.0000 0.4632 0.3315 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.6261 0.0409 0.4419 0.0000 0.0000 4.5506 - 10.45 51.08 1998 0.0000 0.0000 0.0355 2.2964 0.3625 0.0000 0.4643 0.3215 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.5716 0.0382 0.4287 0.0000 0.0000 4.5186 - 10.45 51.08 1999 0.0000 0.0000 0.0341 2.4179 0.3597 0.0000 0.4777 0.3204 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.5696 0.0369 0.4272 0.0000 0.0000 4.6436 - 10.45 51.08 2000 0.0000 0.0000 0.0207 2.4691 0.3425 0.0000 0.4783 0.3071 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.5459 0.0342 0.4094 0.0000 0.0000 4.6072 - 10.45 51.08 2001 0.0000 0.0000 0.0192 2.5279 0.3012 0.0000 0.4780 0.2971 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.4952 0.0318 0.3962 0.0000 0.0000 4.5468 - 10.45 51.08 2002 0.0000 0.0000 0.0089 2.5877 0.2884 0.0000 0.4762 0.2856 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.4761 0.0298 0.3491 0.0000 0.0000 4.5018 - 10.45 51.08 2003 0.0000 0.0000 0.0079 2.5513 0.2423 0.0000 0.4607 0.2652 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.4420 0.0265 0.3241 0.0000 0.0000 4.3200 - 10.45 51.08 2004 0.0000 0.0000 0.0073 2.5869 0.2084 0.0000 0.4575 0.2541 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.3671 0.0245 0.3106 0.0000 0.0000 4.2163 - 10.45 51.08 2005 0.0000 0.0000 0.0068 2.6770 0.2009 0.0000 0.4625 0.2462 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.3556 0.0233 0.3009 0.0000 0.0000 4.2732 - 10.45 51.08 2006 0.0000 0.0000 0.0000 2.7425 0.1951 0.0000 0.4688 0.2404 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.3472 0.0215 0.2671 0.0000 0.0000 4.2825 - 10.45 51.08 2007 0.0000 0.0000 0.0000 2.8510 0.1889 0.0000 0.4740 0.2393 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.3456 0.0204 0.2659 0.0000 0.0000 4.3851 - 10.45 51.08 2008 0.0000 0.0000 0.0000 2.5564 0.1369 0.0000 0.4629 0.1990 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.3235 0.0183 0.2488 0.0000 0.0000 3.9459 - 10.45 51.08 2009 0.0000 0.0000 0.0000 2.6366 0.1351 0.0000 0.4742 0.1974 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.2961 0.0177 0.2468 0.0000 0.0000 4.0038 - 10.45 51.08 2010 0.0000 0.0000 0.0000 2.7157 0.1321 0.0000 0.4802 0.1700 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.2672 0.0168 0.2429 0.0000 0.0000 4.0250 - 10.45 51.08 2011 0.0000 0.0000 0.0000 2.8068 0.1305 0.0000 0.4914 0.1685 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.2648 0.0108 0.2407 0.0000 0.0000 4.1136 - 10.45 51.08 2012 0.0000 0.0000 0.0000 2.8675 0.1255 0.0000 0.4922 0.1630 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.2562 0.0101 0.2329 0.0000 0.0000 4.1475 diff --git a/rLPJGUESS/inst/extdata/outputsForTests/run_patcharea/outDirectory/maet.out b/rLPJGUESS/inst/extdata/outputsForTests/run_patcharea/outDirectory/maet.out deleted file mode 100644 index 23a866a..0000000 --- a/rLPJGUESS/inst/extdata/outputsForTests/run_patcharea/outDirectory/maet.out +++ /dev/null @@ -1,63 +0,0 @@ - Lon Lat Year Jan Feb Mar Apr May Jun Jul Aug Sep Oct Nov Dec - 10.45 51.08 1951 0.000 0.000 1.041 13.079 29.680 36.820 42.729 33.423 22.796 9.885 1.706 0.000 - 10.45 51.08 1952 0.000 0.000 0.229 17.201 32.774 40.717 46.043 35.584 13.307 6.377 0.597 0.000 - 10.45 51.08 1953 0.000 0.045 4.287 25.968 37.995 31.937 40.113 35.423 22.860 9.992 0.615 0.000 - 10.45 51.08 1954 0.000 0.000 0.918 9.555 35.796 39.386 27.713 30.418 19.490 9.398 2.085 0.000 - 10.45 51.08 1955 0.000 0.000 0.854 11.074 31.760 35.365 31.276 27.178 19.643 8.812 1.533 0.000 - 10.45 51.08 1956 0.000 0.000 0.456 7.487 35.353 27.909 34.168 29.213 20.755 8.450 0.910 0.000 - 10.45 51.08 1957 0.000 0.006 6.600 19.533 29.742 44.667 35.742 30.663 16.559 8.553 0.125 0.000 - 10.45 51.08 1958 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1959 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1960 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1961 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1962 0.236 0.411 1.797 27.174 45.494 52.553 61.350 47.417 28.937 13.654 1.697 0.001 - 10.45 51.08 1963 0.001 0.002 2.743 24.947 64.311 62.058 77.932 56.465 37.373 12.038 3.212 0.138 - 10.45 51.08 1964 0.003 0.032 0.624 23.496 70.910 83.874 75.081 57.257 37.986 12.249 0.795 0.248 - 10.45 51.08 1965 0.206 0.050 1.843 19.358 49.900 64.869 59.912 60.793 33.541 15.917 1.231 0.066 - 10.45 51.08 1966 0.048 2.868 6.492 24.954 64.890 71.024 52.872 52.656 32.301 15.659 0.298 0.018 - 10.45 51.08 1967 0.045 2.056 11.840 23.201 69.949 65.735 96.082 59.470 32.028 19.200 2.750 0.016 - 10.45 51.08 1968 0.014 0.143 6.653 39.280 59.633 82.049 84.522 62.600 34.233 14.653 2.137 0.005 - 10.45 51.08 1969 0.022 0.027 0.039 14.290 69.213 85.048 102.498 53.618 47.185 20.943 4.772 0.002 - 10.45 51.08 1970 0.006 0.022 1.018 12.882 59.530 101.807 92.219 64.078 53.677 12.397 3.623 0.119 - 10.45 51.08 1971 0.018 0.126 2.144 29.689 77.449 70.891 97.949 58.735 22.541 14.732 3.690 0.016 - 10.45 51.08 1972 0.011 0.029 7.238 27.754 64.170 91.368 81.939 64.488 38.653 17.697 3.588 0.012 - 10.45 51.08 1973 0.004 0.015 2.942 13.098 75.880 90.684 66.391 22.484 40.269 17.050 2.702 0.004 - 10.45 51.08 1974 0.097 1.017 12.272 44.920 63.820 77.662 77.881 75.534 51.429 8.860 0.017 0.038 - 10.45 51.08 1975 0.012 0.064 2.611 24.278 72.177 75.174 103.336 70.241 49.934 14.091 2.684 0.003 - 10.45 51.08 1976 0.007 0.017 1.152 28.501 85.396 88.557 24.686 29.180 12.966 18.503 3.082 0.002 - 10.45 51.08 1977 0.002 0.303 10.016 25.560 77.450 60.790 81.312 50.831 37.832 18.185 2.448 0.001 - 10.45 51.08 1978 0.001 0.181 6.257 28.533 60.342 82.755 82.263 68.742 33.915 19.406 2.118 0.006 - 10.45 51.08 1979 0.009 0.000 0.550 14.324 68.855 90.816 72.383 74.706 45.113 21.509 1.575 0.018 - 10.45 51.08 1980 0.017 0.068 1.279 14.984 73.515 84.785 67.551 59.610 37.935 13.952 0.414 0.076 - 10.45 51.08 1981 0.079 0.020 13.644 40.636 71.834 80.157 76.187 68.498 46.611 17.356 0.180 0.000 - 10.45 51.08 1982 0.000 0.001 1.086 27.737 77.352 78.514 80.734 29.706 8.568 11.951 6.499 0.000 - 10.45 51.08 1983 0.000 0.048 4.791 32.200 56.788 93.568 92.550 61.685 32.232 15.464 1.229 0.000 - 10.45 51.08 1984 0.000 0.000 0.237 17.585 42.790 72.543 78.368 69.818 33.112 16.942 4.209 0.000 - 10.45 51.08 1985 0.001 0.009 0.469 30.964 74.510 71.867 95.864 74.666 34.325 2.979 1.517 0.015 - 10.45 51.08 1986 0.015 0.001 1.277 11.797 75.015 89.578 89.482 67.652 37.502 22.651 5.621 0.000 - 10.45 51.08 1987 0.000 0.000 0.476 33.413 59.591 60.342 90.098 63.368 41.839 20.021 2.310 0.000 - 10.45 51.08 1988 0.000 0.000 0.693 28.039 87.029 66.841 95.217 70.897 22.404 10.372 2.780 0.000 - 10.45 51.08 1989 0.004 0.080 11.492 28.119 98.065 92.874 38.071 32.684 25.758 21.672 1.538 0.000 - 10.45 51.08 1990 0.000 2.880 22.068 37.199 95.672 70.157 81.013 34.705 32.804 19.540 0.000 0.000 - 10.45 51.08 1991 0.000 0.002 10.733 39.937 55.197 77.552 35.999 75.107 23.208 12.413 1.300 0.000 - 10.45 51.08 1992 0.000 0.085 4.394 28.145 87.343 69.371 83.417 48.193 43.463 11.201 0.643 0.000 - 10.45 51.08 1993 0.007 0.106 8.358 47.886 73.247 79.345 78.099 73.370 33.184 14.718 0.346 0.000 - 10.45 51.08 1994 0.000 0.040 8.309 32.383 71.977 89.820 108.881 72.715 40.168 16.273 3.596 0.000 - 10.45 51.08 1995 0.000 0.169 4.945 29.941 70.293 66.902 105.042 92.050 31.981 22.551 1.411 0.000 - 10.45 51.08 1996 0.000 0.000 0.174 26.196 50.046 92.432 77.524 66.313 28.149 15.932 3.203 0.000 - 10.45 51.08 1997 0.000 0.528 11.848 32.951 75.077 84.923 65.643 86.973 56.233 15.735 1.761 0.000 - 10.45 51.08 1998 0.000 2.148 11.781 41.085 87.409 87.954 74.188 47.658 32.935 9.714 0.000 0.000 - 10.45 51.08 1999 0.002 0.261 6.909 37.741 85.091 83.614 92.414 75.987 60.711 16.348 2.216 0.000 - 10.45 51.08 2000 0.000 0.436 7.923 45.678 96.644 84.379 58.245 71.212 39.032 19.904 1.940 0.000 - 10.45 51.08 2001 0.000 0.083 3.888 28.427 96.709 72.355 103.259 65.468 29.457 24.066 2.308 0.000 - 10.45 51.08 2002 0.036 3.200 15.026 38.659 68.145 88.725 73.915 70.051 44.395 10.653 0.000 0.000 - 10.45 51.08 2003 0.000 0.000 6.324 39.392 77.176 115.433 82.820 32.411 49.148 13.738 1.194 0.000 - 10.45 51.08 2004 0.000 0.575 13.072 49.109 63.153 82.467 82.557 58.593 15.906 22.960 0.000 0.000 - 10.45 51.08 2005 0.000 0.000 6.614 43.644 79.833 79.065 64.501 62.538 53.836 25.199 3.700 0.000 - 10.45 51.08 2006 0.000 0.000 1.569 31.403 82.471 101.064 97.812 53.018 57.012 21.061 4.047 0.000 - 10.45 51.08 2007 0.000 0.012 5.871 62.929 78.238 92.447 82.901 72.562 38.369 18.213 1.340 0.000 - 10.45 51.08 2008 0.012 2.236 10.504 31.150 89.390 96.075 85.525 55.805 21.108 17.940 0.854 0.000 - 10.45 51.08 2009 0.000 0.000 0.821 46.934 70.695 63.608 81.768 82.498 42.626 12.091 1.256 0.000 - 10.45 51.08 2010 0.000 0.000 6.859 46.328 45.420 96.860 89.254 52.741 35.540 18.855 1.902 0.000 - 10.45 51.08 2011 0.000 0.195 12.418 56.577 73.625 75.418 70.798 60.787 48.972 22.083 0.473 0.000 - 10.45 51.08 2012 0.000 0.001 15.468 32.104 81.333 63.818 76.551 80.022 44.215 19.870 1.666 0.000 diff --git a/rLPJGUESS/inst/extdata/outputsForTests/run_patcharea/outDirectory/mevap.out b/rLPJGUESS/inst/extdata/outputsForTests/run_patcharea/outDirectory/mevap.out deleted file mode 100644 index 0c49980..0000000 --- a/rLPJGUESS/inst/extdata/outputsForTests/run_patcharea/outDirectory/mevap.out +++ /dev/null @@ -1,63 +0,0 @@ - Lon Lat Year Jan Feb Mar Apr May Jun Jul Aug Sep Oct Nov Dec - 10.45 51.08 1951 5.977 12.664 22.289 20.532 9.636 49.179 25.708 31.762 14.504 5.361 6.655 6.210 - 10.45 51.08 1952 4.381 3.348 27.372 34.213 33.282 18.909 6.914 3.180 20.108 15.362 7.786 3.940 - 10.45 51.08 1953 0.148 5.320 23.466 11.475 10.309 24.003 31.113 15.626 4.684 3.417 4.661 3.008 - 10.45 51.08 1954 4.459 9.927 20.496 26.174 15.470 11.868 30.139 28.586 14.386 11.955 4.936 4.953 - 10.45 51.08 1955 0.731 6.070 10.409 30.456 15.717 17.379 31.450 35.868 15.654 6.875 5.264 5.589 - 10.45 51.08 1956 6.469 0.000 21.981 29.627 25.100 35.186 47.838 26.660 11.850 7.717 5.012 4.017 - 10.45 51.08 1957 6.902 12.426 20.994 16.139 15.254 22.726 28.940 25.007 12.101 13.797 9.238 4.882 - 10.45 51.08 1958 7.597 11.388 9.009 30.805 50.219 55.081 58.178 49.061 23.508 19.463 8.878 5.701 - 10.45 51.08 1959 7.467 9.450 13.735 18.094 26.048 34.899 17.563 26.780 13.650 5.141 7.074 4.943 - 10.45 51.08 1960 5.024 11.294 17.971 21.084 47.437 37.911 27.407 39.835 33.513 23.314 9.964 2.003 - 10.45 51.08 1961 1.398 14.922 14.572 24.194 32.205 39.452 19.443 23.018 15.066 5.390 3.649 4.597 - 10.45 51.08 1962 6.755 11.302 8.848 18.523 2.119 0.360 0.907 0.079 0.387 0.036 0.042 1.059 - 10.45 51.08 1963 0.000 0.000 18.649 17.359 1.726 0.816 1.634 1.979 0.711 0.791 1.069 3.800 - 10.45 51.08 1964 3.558 12.177 14.562 18.439 6.892 2.444 0.416 0.376 0.031 0.102 1.538 1.727 - 10.45 51.08 1965 4.514 0.000 13.357 18.616 13.189 9.875 5.330 4.379 2.263 0.764 0.587 4.952 - 10.45 51.08 1966 4.143 9.107 15.864 18.042 6.241 5.450 17.492 10.391 7.061 2.455 7.025 5.386 - 10.45 51.08 1967 6.191 10.387 17.937 14.654 5.097 4.159 2.711 1.090 2.222 1.578 2.476 4.166 - 10.45 51.08 1968 4.316 11.049 23.533 8.800 0.076 0.000 0.000 0.000 0.000 0.000 4.973 3.480 - 10.45 51.08 1969 5.572 3.199 0.000 27.000 8.492 0.000 0.000 0.000 0.000 0.000 0.234 1.382 - 10.45 51.08 1970 0.000 2.393 13.169 30.041 7.124 0.000 0.000 0.000 0.000 0.000 0.000 4.602 - 10.45 51.08 1971 3.328 8.951 13.588 11.232 2.705 0.000 0.000 0.000 0.000 0.000 1.786 5.198 - 10.45 51.08 1972 3.572 7.598 24.215 11.677 1.144 0.000 0.000 0.000 0.000 0.000 2.046 5.048 - 10.45 51.08 1973 5.126 9.499 21.740 15.993 5.425 0.000 0.000 0.000 0.000 0.000 3.509 5.343 - 10.45 51.08 1974 6.800 9.518 17.717 5.255 0.046 0.000 0.000 0.000 0.000 0.000 8.769 6.493 - 10.45 51.08 1975 7.812 10.843 19.946 24.437 2.354 0.000 0.000 0.000 0.000 0.000 0.840 1.567 - 10.45 51.08 1976 5.954 9.872 14.579 10.723 1.253 0.000 0.000 0.000 0.000 0.000 0.848 2.518 - 10.45 51.08 1977 3.503 9.110 17.706 14.018 1.110 0.000 0.000 0.000 0.000 0.000 6.006 5.612 - 10.45 51.08 1978 6.033 5.410 17.228 10.428 1.348 0.000 0.000 0.000 0.000 0.000 2.742 3.625 - 10.45 51.08 1979 0.000 0.000 17.639 27.687 9.578 0.000 0.000 0.000 0.000 0.000 2.981 5.468 - 10.45 51.08 1980 5.084 11.142 11.888 17.596 9.978 0.000 0.000 0.000 0.000 0.000 2.026 2.970 - 10.45 51.08 1981 2.028 8.521 20.975 3.891 0.000 0.000 0.000 0.000 0.000 0.000 10.008 1.928 - 10.45 51.08 1982 5.913 11.267 17.061 10.484 3.969 0.000 0.000 0.000 0.000 0.000 0.109 2.033 - 10.45 51.08 1983 3.752 5.684 13.160 26.750 0.505 0.000 0.000 0.000 0.000 0.000 0.048 0.529 - 10.45 51.08 1984 2.416 8.591 17.302 31.641 6.968 0.000 0.000 0.000 0.000 0.000 2.999 5.806 - 10.45 51.08 1985 2.463 10.247 15.202 14.319 1.502 0.000 0.000 0.000 0.000 0.000 0.030 2.218 - 10.45 51.08 1986 6.109 3.709 21.695 29.101 4.722 0.000 0.000 0.000 0.000 0.000 0.931 4.373 - 10.45 51.08 1987 1.805 4.335 7.238 20.797 0.752 0.000 0.000 0.000 0.000 0.000 1.807 5.609 - 10.45 51.08 1988 7.889 8.339 11.019 25.465 0.980 0.000 0.000 0.000 0.000 0.000 0.231 4.348 - 10.45 51.08 1989 8.222 9.371 21.584 6.833 0.880 0.000 0.000 0.000 0.000 0.000 5.704 5.932 - 10.45 51.08 1990 7.504 13.341 14.719 3.719 0.000 0.000 0.000 0.000 0.000 0.033 1.981 3.377 - 10.45 51.08 1991 5.232 6.970 13.205 4.079 0.420 0.000 0.000 0.000 0.000 0.000 0.323 1.229 - 10.45 51.08 1992 3.960 7.479 18.518 22.481 1.453 0.000 0.000 0.000 0.000 0.000 4.882 6.041 - 10.45 51.08 1993 7.215 3.556 18.067 8.934 0.000 0.000 0.000 0.000 0.000 0.000 5.487 5.985 - 10.45 51.08 1994 7.843 9.804 23.586 18.756 0.181 0.000 0.000 0.000 0.000 0.000 5.330 6.607 - 10.45 51.08 1995 7.469 14.277 16.553 13.674 1.069 0.000 0.000 0.000 0.000 0.000 3.683 3.433 - 10.45 51.08 1996 4.694 10.726 15.503 16.757 0.960 0.000 0.000 0.000 0.000 0.000 1.440 4.927 - 10.45 51.08 1997 6.025 14.667 20.475 16.228 1.321 0.000 0.000 0.000 0.000 0.000 3.103 3.875 - 10.45 51.08 1998 7.103 9.768 13.228 4.100 0.000 0.000 0.000 0.000 0.000 3.520 9.576 5.455 - 10.45 51.08 1999 6.991 9.769 18.267 11.632 0.115 0.000 0.000 0.000 0.000 0.000 4.242 5.369 - 10.45 51.08 2000 7.291 15.174 23.184 14.583 0.000 0.000 0.000 0.000 0.000 0.000 3.490 3.141 - 10.45 51.08 2001 3.713 8.300 14.790 18.971 0.947 0.000 0.000 0.000 0.000 0.000 4.488 5.257 - 10.45 51.08 2002 7.536 10.737 14.259 7.052 0.000 0.000 0.000 0.000 0.000 7.283 10.840 4.271 - 10.45 51.08 2003 7.471 11.149 22.962 9.106 0.015 0.000 0.000 0.000 0.000 0.000 2.655 4.319 - 10.45 51.08 2004 5.777 10.033 12.791 5.087 0.000 0.000 0.000 0.000 0.000 0.009 2.471 3.792 - 10.45 51.08 2005 5.928 9.600 17.465 12.242 0.040 0.000 0.000 0.000 0.000 0.000 0.938 1.999 - 10.45 51.08 2006 3.028 5.414 11.905 19.315 1.994 0.000 0.000 0.000 0.000 0.000 1.349 2.512 - 10.45 51.08 2007 5.372 10.143 20.999 10.619 0.000 0.000 0.000 0.000 0.000 0.000 5.700 5.675 - 10.45 51.08 2008 7.785 10.135 15.954 17.903 1.104 0.000 0.000 0.000 0.000 0.000 4.695 5.231 - 10.45 51.08 2009 5.669 9.227 20.767 14.302 0.000 0.000 0.000 0.000 0.000 0.000 7.317 5.551 - 10.45 51.08 2010 0.000 2.940 22.088 9.159 0.028 0.000 0.000 0.000 0.000 0.000 6.460 0.000 - 10.45 51.08 2011 4.909 10.683 18.905 5.741 0.000 0.000 0.000 0.000 0.000 0.037 4.046 3.454 - 10.45 51.08 2012 7.415 9.410 15.247 4.317 0.009 0.000 0.000 0.000 0.000 0.000 0.916 4.478 diff --git a/rLPJGUESS/inst/extdata/outputsForTests/run_patcharea/outDirectory/mgpp.out b/rLPJGUESS/inst/extdata/outputsForTests/run_patcharea/outDirectory/mgpp.out deleted file mode 100644 index a31c677..0000000 --- a/rLPJGUESS/inst/extdata/outputsForTests/run_patcharea/outDirectory/mgpp.out +++ /dev/null @@ -1,63 +0,0 @@ - Lon Lat Year Jan Feb Mar Apr May Jun Jul Aug Sep Oct Nov Dec - 10.45 51.08 1951 0.000 0.000 0.002 0.043 0.167 0.214 0.210 0.170 0.125 0.057 0.014 0.000 - 10.45 51.08 1952 0.000 0.000 0.000 0.080 0.197 0.217 0.205 0.164 0.094 0.047 0.006 0.000 - 10.45 51.08 1953 0.000 0.000 0.014 0.126 0.184 0.177 0.196 0.180 0.131 0.067 0.004 0.000 - 10.45 51.08 1954 0.000 0.000 0.002 0.031 0.186 0.203 0.170 0.163 0.111 0.067 0.014 0.000 - 10.45 51.08 1955 0.000 0.000 0.002 0.033 0.173 0.196 0.167 0.146 0.118 0.058 0.010 0.000 - 10.45 51.08 1956 0.000 0.000 0.001 0.024 0.180 0.171 0.186 0.172 0.125 0.057 0.006 0.000 - 10.45 51.08 1957 0.000 0.000 0.024 0.088 0.164 0.219 0.168 0.167 0.105 0.058 0.001 0.000 - 10.45 51.08 1958 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1959 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1960 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1961 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1962 0.001 0.001 0.004 0.070 0.139 0.149 0.158 0.120 0.080 0.033 0.004 0.000 - 10.45 51.08 1963 0.000 0.000 0.008 0.070 0.175 0.166 0.179 0.137 0.094 0.034 0.013 0.000 - 10.45 51.08 1964 0.000 0.002 0.004 0.065 0.197 0.209 0.187 0.145 0.110 0.041 0.004 0.001 - 10.45 51.08 1965 0.002 0.000 0.009 0.051 0.160 0.205 0.186 0.189 0.124 0.061 0.007 0.002 - 10.45 51.08 1966 0.001 0.009 0.017 0.084 0.232 0.231 0.200 0.187 0.127 0.072 0.003 0.002 - 10.45 51.08 1967 0.002 0.007 0.027 0.061 0.225 0.223 0.264 0.190 0.126 0.084 0.014 0.001 - 10.45 51.08 1968 0.001 0.002 0.024 0.102 0.202 0.245 0.245 0.190 0.128 0.068 0.012 0.000 - 10.45 51.08 1969 0.002 0.001 0.002 0.045 0.212 0.253 0.248 0.171 0.153 0.083 0.025 0.000 - 10.45 51.08 1970 0.000 0.001 0.005 0.035 0.187 0.265 0.249 0.198 0.161 0.058 0.021 0.002 - 10.45 51.08 1971 0.001 0.002 0.007 0.077 0.207 0.221 0.249 0.148 0.079 0.055 0.017 0.002 - 10.45 51.08 1972 0.000 0.002 0.021 0.069 0.199 0.266 0.219 0.199 0.128 0.061 0.018 0.001 - 10.45 51.08 1973 0.000 0.001 0.011 0.029 0.210 0.247 0.189 0.064 0.126 0.065 0.012 0.001 - 10.45 51.08 1974 0.001 0.003 0.031 0.116 0.203 0.239 0.230 0.196 0.154 0.038 0.002 0.001 - 10.45 51.08 1975 0.002 0.001 0.007 0.058 0.210 0.225 0.249 0.176 0.146 0.054 0.011 0.001 - 10.45 51.08 1976 0.001 0.001 0.003 0.063 0.236 0.234 0.059 0.093 0.058 0.070 0.015 0.000 - 10.45 51.08 1977 0.000 0.002 0.027 0.063 0.236 0.192 0.229 0.168 0.124 0.076 0.018 0.000 - 10.45 51.08 1978 0.000 0.001 0.014 0.066 0.181 0.231 0.231 0.196 0.125 0.074 0.007 0.000 - 10.45 51.08 1979 0.000 0.000 0.002 0.036 0.177 0.237 0.217 0.206 0.143 0.073 0.011 0.000 - 10.45 51.08 1980 0.000 0.001 0.003 0.036 0.194 0.246 0.201 0.147 0.126 0.057 0.001 0.001 - 10.45 51.08 1981 0.000 0.000 0.035 0.111 0.209 0.223 0.208 0.193 0.148 0.069 0.002 0.000 - 10.45 51.08 1982 0.000 0.000 0.002 0.057 0.201 0.215 0.204 0.065 0.021 0.059 0.031 0.000 - 10.45 51.08 1983 0.000 0.000 0.011 0.088 0.195 0.249 0.219 0.155 0.110 0.057 0.006 0.000 - 10.45 51.08 1984 0.000 0.000 0.001 0.040 0.141 0.223 0.222 0.192 0.117 0.080 0.017 0.000 - 10.45 51.08 1985 0.000 0.000 0.001 0.071 0.205 0.223 0.251 0.210 0.107 0.014 0.008 0.000 - 10.45 51.08 1986 0.000 0.000 0.002 0.028 0.216 0.243 0.236 0.188 0.138 0.089 0.029 0.000 - 10.45 51.08 1987 0.000 0.000 0.001 0.078 0.196 0.211 0.244 0.193 0.140 0.080 0.016 0.000 - 10.45 51.08 1988 0.000 0.000 0.002 0.062 0.239 0.203 0.250 0.177 0.078 0.047 0.014 0.000 - 10.45 51.08 1989 0.000 0.000 0.025 0.083 0.278 0.260 0.100 0.102 0.087 0.090 0.012 0.000 - 10.45 51.08 1990 0.000 0.008 0.064 0.117 0.285 0.216 0.219 0.089 0.126 0.075 0.000 0.000 - 10.45 51.08 1991 0.000 0.000 0.027 0.112 0.184 0.243 0.086 0.195 0.061 0.046 0.007 0.000 - 10.45 51.08 1992 0.000 0.000 0.009 0.066 0.242 0.201 0.212 0.109 0.148 0.051 0.002 0.000 - 10.45 51.08 1993 0.000 0.000 0.019 0.122 0.223 0.231 0.227 0.206 0.124 0.062 0.001 0.000 - 10.45 51.08 1994 0.000 0.000 0.021 0.087 0.233 0.249 0.246 0.194 0.142 0.068 0.019 0.000 - 10.45 51.08 1995 0.000 0.001 0.010 0.082 0.222 0.214 0.257 0.224 0.123 0.088 0.009 0.000 - 10.45 51.08 1996 0.000 0.000 0.000 0.067 0.176 0.256 0.235 0.195 0.111 0.076 0.021 0.000 - 10.45 51.08 1997 0.000 0.002 0.031 0.079 0.223 0.244 0.207 0.211 0.174 0.066 0.008 0.000 - 10.45 51.08 1998 0.000 0.007 0.031 0.135 0.257 0.243 0.219 0.132 0.127 0.054 0.000 0.000 - 10.45 51.08 1999 0.000 0.001 0.017 0.111 0.258 0.253 0.236 0.208 0.166 0.071 0.013 0.000 - 10.45 51.08 2000 0.000 0.001 0.021 0.119 0.269 0.226 0.192 0.189 0.136 0.087 0.013 0.000 - 10.45 51.08 2001 0.000 0.000 0.012 0.082 0.275 0.232 0.264 0.162 0.120 0.096 0.015 0.000 - 10.45 51.08 2002 0.000 0.012 0.047 0.124 0.220 0.250 0.209 0.189 0.147 0.053 0.000 0.000 - 10.45 51.08 2003 0.000 0.000 0.013 0.096 0.237 0.295 0.211 0.073 0.161 0.060 0.007 0.000 - 10.45 51.08 2004 0.000 0.002 0.034 0.153 0.229 0.249 0.241 0.153 0.057 0.094 0.000 0.000 - 10.45 51.08 2005 0.000 0.000 0.016 0.130 0.240 0.235 0.181 0.184 0.167 0.107 0.021 0.000 - 10.45 51.08 2006 0.000 0.000 0.004 0.085 0.257 0.278 0.230 0.180 0.161 0.095 0.026 0.000 - 10.45 51.08 2007 0.000 0.000 0.015 0.171 0.252 0.259 0.235 0.212 0.145 0.079 0.012 0.000 - 10.45 51.08 2008 0.000 0.006 0.030 0.097 0.266 0.264 0.231 0.154 0.080 0.087 0.006 0.000 - 10.45 51.08 2009 0.000 0.000 0.002 0.137 0.239 0.218 0.230 0.217 0.146 0.061 0.012 0.000 - 10.45 51.08 2010 0.000 0.000 0.018 0.136 0.182 0.275 0.232 0.176 0.136 0.083 0.012 0.000 - 10.45 51.08 2011 0.000 0.001 0.029 0.180 0.235 0.234 0.223 0.184 0.162 0.095 0.004 0.000 - 10.45 51.08 2012 0.000 0.000 0.037 0.102 0.251 0.220 0.231 0.219 0.152 0.088 0.011 0.000 diff --git a/rLPJGUESS/inst/extdata/outputsForTests/run_patcharea/outDirectory/mintercep.out b/rLPJGUESS/inst/extdata/outputsForTests/run_patcharea/outDirectory/mintercep.out deleted file mode 100644 index 14eb31f..0000000 --- a/rLPJGUESS/inst/extdata/outputsForTests/run_patcharea/outDirectory/mintercep.out +++ /dev/null @@ -1,63 +0,0 @@ - Lon Lat Year Jan Feb Mar Apr May Jun Jul Aug Sep Oct Nov Dec - 10.45 51.08 1951 0.000 0.000 0.091 0.425 2.009 8.480 2.533 4.735 2.224 0.529 0.928 0.000 - 10.45 51.08 1952 0.000 0.000 0.148 1.365 4.255 2.296 1.127 2.110 5.293 3.509 1.701 0.000 - 10.45 51.08 1953 0.000 0.000 0.033 0.729 2.626 5.759 3.105 2.584 1.223 1.250 0.000 0.000 - 10.45 51.08 1954 0.000 0.000 0.026 0.705 1.334 2.725 6.488 4.297 2.604 2.205 0.688 0.000 - 10.45 51.08 1955 0.000 0.000 0.016 0.540 2.113 3.502 5.240 3.323 2.569 1.112 0.143 0.000 - 10.45 51.08 1956 0.000 0.000 0.000 0.971 1.811 6.967 8.344 4.372 1.244 2.499 0.861 0.000 - 10.45 51.08 1957 0.000 0.003 0.534 0.769 2.799 3.609 5.056 2.552 3.368 0.890 0.000 0.000 - 10.45 51.08 1958 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1959 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1960 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1961 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1962 0.129 0.124 0.160 0.491 1.740 0.314 2.197 0.776 1.191 0.243 0.143 0.052 - 10.45 51.08 1963 0.091 0.065 0.282 0.617 1.127 3.606 1.290 4.083 1.440 1.038 1.679 0.038 - 10.45 51.08 1964 0.054 0.184 0.227 1.263 3.219 1.891 1.984 2.438 1.198 1.132 0.194 0.095 - 10.45 51.08 1965 0.222 0.263 0.262 1.371 1.570 5.634 3.691 2.543 2.528 0.492 1.049 0.205 - 10.45 51.08 1966 0.199 0.322 0.755 2.641 3.820 6.692 7.010 5.765 1.382 3.230 0.536 0.247 - 10.45 51.08 1967 0.195 0.292 1.271 1.023 4.336 7.901 3.840 5.561 5.398 2.673 0.676 0.212 - 10.45 51.08 1968 0.209 0.358 0.440 4.198 3.568 6.148 3.823 5.511 5.585 3.724 0.996 0.132 - 10.45 51.08 1969 0.146 0.315 0.348 1.884 7.418 10.213 1.010 8.385 3.849 1.472 1.831 0.095 - 10.45 51.08 1970 0.093 0.336 0.259 1.145 6.453 5.029 4.184 12.333 1.944 5.664 2.844 0.312 - 10.45 51.08 1971 0.080 0.193 0.211 2.037 3.752 7.244 1.247 3.859 2.697 2.616 1.540 0.105 - 10.45 51.08 1972 0.046 0.015 0.296 1.317 5.788 7.196 9.967 9.203 2.280 1.848 1.193 0.014 - 10.45 51.08 1973 0.074 0.154 0.073 0.570 3.052 4.085 5.214 2.806 4.987 4.012 1.111 0.075 - 10.45 51.08 1974 0.059 0.297 0.507 0.901 4.788 7.499 5.550 4.710 2.237 5.127 0.054 0.151 - 10.45 51.08 1975 0.031 0.062 0.301 0.735 3.771 6.769 2.429 3.744 2.826 2.822 0.355 0.026 - 10.45 51.08 1976 0.107 0.021 0.051 0.612 2.895 5.095 2.314 2.811 3.274 1.901 1.469 0.030 - 10.45 51.08 1977 0.039 0.066 0.938 0.779 2.082 7.256 4.953 8.669 2.406 2.592 2.060 0.037 - 10.45 51.08 1978 0.018 0.025 0.163 0.422 4.260 1.832 4.143 4.828 4.867 1.962 0.006 0.052 - 10.45 51.08 1979 0.058 0.031 0.145 0.628 2.307 5.259 4.706 1.739 3.853 0.561 2.299 0.043 - 10.45 51.08 1980 0.055 0.022 0.038 1.027 1.669 4.605 4.092 1.332 3.578 2.126 0.365 0.086 - 10.45 51.08 1981 0.220 0.013 0.611 1.947 5.802 3.815 2.229 6.094 2.696 2.809 0.023 0.023 - 10.45 51.08 1982 0.010 0.001 0.017 0.458 1.653 2.926 3.996 1.156 0.732 3.138 0.841 0.008 - 10.45 51.08 1983 0.009 0.012 0.277 2.864 6.316 1.574 1.779 3.517 3.237 0.267 0.128 0.005 - 10.45 51.08 1984 0.006 0.007 0.000 0.182 6.912 3.096 4.119 4.796 3.723 3.785 0.167 0.003 - 10.45 51.08 1985 0.004 0.001 0.021 0.471 2.414 4.342 3.028 3.098 1.362 0.221 0.631 0.028 - 10.45 51.08 1986 0.032 0.001 0.035 0.520 5.343 3.061 2.979 3.867 3.571 1.644 0.358 0.002 - 10.45 51.08 1987 0.001 0.001 0.009 0.194 4.258 9.249 4.923 4.673 5.976 1.389 1.946 0.000 - 10.45 51.08 1988 0.000 0.001 0.059 0.381 1.573 5.120 4.499 1.314 1.796 1.084 1.386 0.000 - 10.45 51.08 1989 0.001 0.004 0.240 1.956 2.029 3.609 3.047 1.559 2.760 1.847 1.814 0.000 - 10.45 51.08 1990 0.000 0.293 0.718 2.402 0.818 5.872 1.355 2.495 3.200 0.561 0.000 0.000 - 10.45 51.08 1991 0.000 0.000 0.330 0.599 1.988 4.083 1.276 5.307 1.131 0.966 0.240 0.000 - 10.45 51.08 1992 0.000 0.004 0.610 0.315 1.292 4.475 4.837 1.806 2.131 2.761 0.196 0.000 - 10.45 51.08 1993 0.018 0.028 0.116 0.417 4.950 3.615 6.007 2.363 2.867 2.503 0.113 0.000 - 10.45 51.08 1994 0.000 0.002 0.413 1.970 5.327 2.565 4.651 5.161 2.534 1.492 0.511 0.000 - 10.45 51.08 1995 0.000 0.045 0.136 1.276 4.821 5.038 7.032 2.370 5.316 0.742 0.673 0.000 - 10.45 51.08 1996 0.000 0.000 0.008 0.693 4.968 4.163 5.293 6.979 1.940 2.937 2.034 0.000 - 10.45 51.08 1997 0.000 0.087 0.949 0.953 2.913 1.889 9.431 2.837 0.774 3.175 0.230 0.000 - 10.45 51.08 1998 0.000 0.111 0.649 2.481 2.887 3.814 5.123 1.960 5.386 4.378 0.000 0.000 - 10.45 51.08 1999 0.003 0.023 0.327 0.942 4.006 4.867 5.437 3.440 1.657 0.930 0.865 0.000 - 10.45 51.08 2000 0.000 0.095 0.775 1.375 1.807 2.678 4.090 4.234 4.405 2.157 0.382 0.000 - 10.45 51.08 2001 0.000 0.011 1.084 1.262 2.556 5.668 5.653 1.250 4.048 2.108 1.237 0.000 - 10.45 51.08 2002 0.004 0.758 1.621 1.735 5.301 5.449 6.181 5.104 3.017 2.628 0.000 0.000 - 10.45 51.08 2003 0.000 0.000 0.037 0.408 3.719 5.689 2.651 1.402 3.379 2.206 0.124 0.000 - 10.45 51.08 2004 0.000 0.030 0.256 2.116 7.461 2.808 4.735 1.927 2.273 0.666 0.000 0.000 - 10.45 51.08 2005 0.000 0.000 0.137 1.319 2.878 2.642 4.826 3.037 4.062 1.312 0.726 0.000 - 10.45 51.08 2006 0.000 0.000 0.068 1.602 3.044 4.311 4.038 6.202 0.613 2.879 1.464 0.000 - 10.45 51.08 2007 0.000 0.004 0.249 0.263 6.449 5.077 7.374 6.015 4.243 0.440 1.269 0.000 - 10.45 51.08 2008 0.006 0.071 0.856 2.219 1.045 3.597 3.697 1.895 2.737 3.666 0.047 0.000 - 10.45 51.08 2009 0.000 0.000 0.029 2.256 3.869 3.384 4.223 0.809 3.275 2.865 1.796 0.000 - 10.45 51.08 2010 0.000 0.000 0.228 0.427 6.160 0.717 7.506 7.595 2.807 0.893 0.720 0.000 - 10.45 51.08 2011 0.000 0.009 0.176 1.182 0.399 4.550 3.887 4.396 1.719 2.185 0.000 0.000 - 10.45 51.08 2012 0.000 0.000 0.032 0.461 2.348 6.936 5.832 2.570 1.986 1.333 0.355 0.000 diff --git a/rLPJGUESS/inst/extdata/outputsForTests/run_patcharea/outDirectory/miso.out b/rLPJGUESS/inst/extdata/outputsForTests/run_patcharea/outDirectory/miso.out deleted file mode 100644 index 8edc368..0000000 --- a/rLPJGUESS/inst/extdata/outputsForTests/run_patcharea/outDirectory/miso.out +++ /dev/null @@ -1,63 +0,0 @@ - Lon Lat Year Jan Feb Mar Apr May Jun Jul Aug Sep Oct Nov Dec - 10.45 51.08 1951 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1952 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1953 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1954 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1955 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1956 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1957 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1958 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1959 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1960 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1961 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1962 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1963 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1964 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1965 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1966 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1967 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1968 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1969 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1970 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1971 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1972 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1973 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1974 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1975 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1976 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1977 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1978 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1979 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1980 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1981 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1982 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1983 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1984 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1985 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1986 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1987 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1988 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1989 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1990 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1991 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1992 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1993 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1994 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1995 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1996 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1997 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1998 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1999 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 2000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 2001 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 2002 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 2003 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 2004 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 2005 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 2006 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 2007 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 2008 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 2009 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 2010 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 2011 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 2012 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 diff --git a/rLPJGUESS/inst/extdata/outputsForTests/run_patcharea/outDirectory/mlai.out b/rLPJGUESS/inst/extdata/outputsForTests/run_patcharea/outDirectory/mlai.out deleted file mode 100644 index bbc08f5..0000000 --- a/rLPJGUESS/inst/extdata/outputsForTests/run_patcharea/outDirectory/mlai.out +++ /dev/null @@ -1,63 +0,0 @@ - Lon Lat Year Jan Feb Mar Apr May Jun Jul Aug Sep Oct Nov Dec - 10.45 51.08 1951 0.000 0.000 0.134 0.885 2.750 3.081 3.081 3.081 3.081 3.081 2.054 0.000 - 10.45 51.08 1952 0.000 0.000 0.047 1.479 3.071 3.071 3.071 3.071 3.071 3.071 1.228 0.000 - 10.45 51.08 1953 0.000 0.005 0.263 2.028 3.067 3.067 3.067 3.067 3.067 3.067 0.409 0.000 - 10.45 51.08 1954 0.000 0.000 0.066 0.744 2.506 3.083 3.083 3.083 3.083 3.083 2.466 0.000 - 10.45 51.08 1955 0.000 0.000 0.075 0.802 2.820 3.048 3.048 3.048 3.048 3.048 1.931 0.000 - 10.45 51.08 1956 0.000 0.000 0.030 0.618 2.444 3.007 3.007 3.007 3.007 3.007 1.905 0.000 - 10.45 51.08 1957 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1958 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1959 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1960 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1961 0.057 0.112 0.674 1.366 1.485 1.485 1.485 1.485 1.485 1.476 0.930 0.308 - 10.45 51.08 1962 0.480 0.266 0.278 1.333 3.292 2.840 3.380 3.031 2.930 3.380 1.742 0.104 - 10.45 51.08 1963 0.155 0.155 0.266 1.517 3.234 3.227 3.232 3.301 3.370 3.370 3.086 0.641 - 10.45 51.08 1964 0.223 0.223 0.242 1.147 3.113 3.072 3.159 3.240 3.238 3.280 1.076 0.691 - 10.45 51.08 1965 0.344 0.278 0.306 0.912 2.257 2.967 2.967 2.967 2.967 2.967 1.533 0.278 - 10.45 51.08 1966 0.337 0.539 1.009 1.883 3.692 3.752 3.752 3.752 3.752 3.752 0.942 0.322 - 10.45 51.08 1967 0.334 0.503 0.976 1.633 3.809 4.536 4.536 4.536 4.536 4.536 2.689 0.334 - 10.45 51.08 1968 0.337 0.345 0.535 2.653 5.081 5.104 5.104 5.104 5.104 5.104 2.022 0.337 - 10.45 51.08 1969 0.312 0.312 0.312 1.115 4.515 5.477 5.477 5.477 5.477 5.477 5.133 0.312 - 10.45 51.08 1970 0.272 0.272 0.305 0.879 4.164 5.663 5.663 5.663 5.663 5.663 5.663 0.550 - 10.45 51.08 1971 0.235 0.243 0.365 1.657 4.774 5.658 5.658 5.658 5.658 5.658 4.032 0.235 - 10.45 51.08 1972 0.203 0.190 0.483 2.036 4.671 5.330 5.330 5.330 5.330 5.330 3.274 0.190 - 10.45 51.08 1973 0.162 0.162 0.261 0.888 3.894 5.431 5.431 5.431 5.431 5.431 2.972 0.162 - 10.45 51.08 1974 0.156 0.421 0.913 3.043 4.789 5.065 5.065 5.065 5.065 5.065 0.133 0.163 - 10.45 51.08 1975 0.115 0.127 0.414 1.109 4.312 5.141 5.141 5.141 5.141 5.141 2.293 0.115 - 10.45 51.08 1976 0.089 0.089 0.138 1.561 4.308 5.052 5.052 5.052 5.052 5.052 3.398 0.089 - 10.45 51.08 1977 0.068 0.095 0.962 1.959 4.158 4.543 4.543 4.543 4.543 4.543 1.530 0.068 - 10.45 51.08 1978 0.056 0.064 0.462 1.578 3.938 4.786 4.786 4.786 4.786 4.786 2.264 0.061 - 10.45 51.08 1979 0.111 0.047 0.076 0.823 3.152 4.962 4.962 4.962 4.962 4.962 2.177 0.108 - 10.45 51.08 1980 0.168 0.048 0.109 0.954 2.976 4.919 4.919 4.919 4.919 4.919 1.179 0.253 - 10.45 51.08 1981 0.316 0.044 0.831 3.416 4.658 4.791 4.791 4.791 4.791 4.791 0.121 0.030 - 10.45 51.08 1982 0.026 0.026 0.072 1.157 3.455 4.867 4.867 4.867 4.867 4.867 4.582 0.026 - 10.45 51.08 1983 0.020 0.072 0.456 1.614 4.198 4.383 4.383 4.383 4.383 4.383 1.968 0.020 - 10.45 51.08 1984 0.014 0.014 0.026 0.581 3.110 4.368 4.368 4.368 4.368 4.368 2.917 0.014 - 10.45 51.08 1985 0.025 0.016 0.049 1.580 3.702 4.427 4.427 4.427 4.427 4.427 1.630 0.043 - 10.45 51.08 1986 0.084 0.007 0.057 0.543 3.779 4.365 4.365 4.365 4.365 4.365 3.871 0.007 - 10.45 51.08 1987 0.000 0.000 0.021 1.119 4.072 4.502 4.502 4.502 4.502 4.502 3.302 0.000 - 10.45 51.08 1988 0.000 0.001 0.059 1.072 4.170 4.683 4.683 4.683 4.683 4.683 3.278 0.000 - 10.45 51.08 1989 0.003 0.022 0.510 2.259 4.242 4.472 4.472 4.472 4.472 4.472 1.319 0.000 - 10.45 51.08 1990 0.000 0.267 1.702 3.236 4.326 4.333 4.333 4.333 4.333 2.967 0.000 0.000 - 10.45 51.08 1991 0.000 0.001 0.794 2.655 4.073 4.443 4.443 4.443 4.443 4.443 0.867 0.000 - 10.45 51.08 1992 0.000 0.021 0.377 1.114 3.559 4.046 4.046 4.046 4.046 4.046 0.405 0.000 - 10.45 51.08 1993 0.014 0.143 0.653 2.067 4.018 4.018 4.018 4.018 4.018 4.018 0.696 0.000 - 10.45 51.08 1994 0.000 0.008 0.574 1.753 4.015 4.081 4.081 4.081 4.081 4.081 1.314 0.000 - 10.45 51.08 1995 0.000 0.070 0.470 1.633 4.081 4.282 4.282 4.282 4.282 4.282 1.805 0.000 - 10.45 51.08 1996 0.000 0.000 0.019 0.930 3.984 4.438 4.438 4.438 4.438 4.438 3.403 0.000 - 10.45 51.08 1997 0.000 0.075 0.966 1.799 4.039 4.488 4.488 4.488 4.488 4.488 1.346 0.000 - 10.45 51.08 1998 0.000 0.286 1.341 3.238 4.551 4.551 4.551 4.551 4.551 3.682 0.000 0.000 - 10.45 51.08 1999 0.004 0.075 0.514 2.225 4.401 4.519 4.519 4.519 4.519 4.519 1.296 0.000 - 10.45 51.08 2000 0.000 0.106 0.685 2.156 4.644 4.644 4.644 4.644 4.644 4.644 1.180 0.000 - 10.45 51.08 2001 0.000 0.077 0.623 1.922 4.330 4.607 4.607 4.607 4.607 4.607 1.732 0.000 - 10.45 51.08 2002 0.009 0.890 1.841 3.039 4.519 4.547 4.547 4.547 4.547 2.885 0.000 0.000 - 10.45 51.08 2003 0.000 0.000 0.241 1.622 4.420 4.502 4.502 4.502 4.502 4.502 0.600 0.000 - 10.45 51.08 2004 0.000 0.345 1.067 2.649 4.320 4.320 4.320 4.320 4.320 4.022 0.000 0.000 - 10.45 51.08 2005 0.000 0.000 0.297 2.149 4.186 4.216 4.216 4.216 4.216 4.216 1.288 0.000 - 10.45 51.08 2006 0.000 0.000 0.065 1.416 4.008 4.266 4.266 4.266 4.266 4.266 2.560 0.000 - 10.45 51.08 2007 0.000 0.006 0.287 2.223 4.281 4.283 4.283 4.283 4.283 4.283 1.228 0.000 - 10.45 51.08 2008 0.019 0.300 1.031 1.913 4.159 4.385 4.385 4.385 4.385 4.385 0.837 0.000 - 10.45 51.08 2009 0.000 0.000 0.062 2.086 3.946 3.946 3.946 3.946 3.946 3.946 1.315 0.000 - 10.45 51.08 2010 0.000 0.000 0.318 2.028 3.944 4.004 4.004 4.004 4.004 4.004 1.197 0.000 - 10.45 51.08 2011 0.001 0.088 0.541 2.824 4.025 4.025 4.025 4.025 4.025 4.003 0.132 0.000 - 10.45 51.08 2012 0.000 0.001 0.560 2.060 4.100 4.114 4.114 4.114 4.114 4.114 0.981 0.000 diff --git a/rLPJGUESS/inst/extdata/outputsForTests/run_patcharea/outDirectory/mmon.out b/rLPJGUESS/inst/extdata/outputsForTests/run_patcharea/outDirectory/mmon.out deleted file mode 100644 index 8edc368..0000000 --- a/rLPJGUESS/inst/extdata/outputsForTests/run_patcharea/outDirectory/mmon.out +++ /dev/null @@ -1,63 +0,0 @@ - Lon Lat Year Jan Feb Mar Apr May Jun Jul Aug Sep Oct Nov Dec - 10.45 51.08 1951 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1952 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1953 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1954 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1955 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1956 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1957 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1958 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1959 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1960 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1961 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1962 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1963 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1964 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1965 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1966 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1967 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1968 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1969 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1970 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1971 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1972 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1973 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1974 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1975 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1976 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1977 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1978 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1979 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1980 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1981 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1982 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1983 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1984 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1985 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1986 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1987 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1988 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1989 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1990 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1991 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1992 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1993 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1994 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1995 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1996 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1997 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1998 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1999 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 2000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 2001 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 2002 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 2003 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 2004 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 2005 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 2006 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 2007 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 2008 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 2009 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 2010 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 2011 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 2012 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 diff --git a/rLPJGUESS/inst/extdata/outputsForTests/run_patcharea/outDirectory/mnee.out b/rLPJGUESS/inst/extdata/outputsForTests/run_patcharea/outDirectory/mnee.out deleted file mode 100644 index a9b92c6..0000000 --- a/rLPJGUESS/inst/extdata/outputsForTests/run_patcharea/outDirectory/mnee.out +++ /dev/null @@ -1,63 +0,0 @@ - Lon Lat Year Jan Feb Mar Apr May Jun Jul Aug Sep Oct Nov Dec - 10.45 51.08 1951 -0.023 -0.019 -0.019 -0.011 0.047 0.073 0.044 0.023 0.003 -0.000 -0.022 -0.020 - 10.45 51.08 1952 -0.017 -0.010 -0.022 -0.001 0.072 0.064 0.009 -0.008 0.016 -0.000 -0.015 -0.010 - 10.45 51.08 1953 -0.010 -0.013 -0.023 0.031 0.039 0.032 0.034 0.025 0.011 -0.011 -0.027 -0.024 - 10.45 51.08 1954 -0.009 -0.005 -0.027 -0.012 0.058 0.035 0.041 0.028 0.001 -0.002 -0.020 -0.023 - 10.45 51.08 1955 -0.009 -0.010 -0.012 -0.012 0.054 0.054 0.019 0.018 0.009 -0.004 -0.016 -0.018 - 10.45 51.08 1956 -0.019 -0.001 -0.018 -0.015 0.056 0.046 0.044 0.043 0.018 -0.010 -0.017 -0.021 - 10.45 51.08 1957 -0.013 -0.026 -0.021 0.020 0.059 0.053 0.003 0.037 0.014 0.001 -0.027 -0.013 - 10.45 51.08 1958 -0.010 -0.015 -0.004 -0.022 -0.078 -0.090 -0.113 -0.116 -0.106 -0.058 -0.023 -0.015 - 10.45 51.08 1959 -0.010 -0.003 -0.027 -0.045 -0.065 -0.080 -0.150 -0.110 -0.088 -0.055 -0.016 -0.008 - 10.45 51.08 1960 -0.014 -0.006 -0.026 -0.057 -0.085 -0.141 -0.132 -0.113 -0.082 -0.043 -0.028 -0.013 - 10.45 51.08 1961 -0.003 -0.011 -0.030 -0.036 -0.043 -0.066 -0.100 -0.080 -0.096 -0.072 -0.022 -0.008 - 10.45 51.08 1962 -0.008 -0.006 0.001 0.018 0.037 0.009 0.004 -0.049 -0.044 -0.053 -0.023 -0.003 - 10.45 51.08 1963 -0.000 -0.000 -0.005 0.005 0.026 -0.022 -0.026 -0.031 -0.041 -0.032 -0.027 -0.007 - 10.45 51.08 1964 -0.001 -0.004 -0.003 0.003 0.049 -0.011 -0.028 -0.048 -0.040 -0.033 -0.023 -0.014 - 10.45 51.08 1965 -0.011 -0.002 -0.002 -0.007 0.045 0.051 0.013 0.020 0.003 -0.021 -0.014 -0.010 - 10.45 51.08 1966 -0.005 -0.008 -0.013 0.019 0.064 0.035 0.061 0.036 0.017 -0.021 -0.012 -0.010 - 10.45 51.08 1967 -0.010 -0.015 -0.013 0.008 0.063 0.071 0.037 -0.009 0.009 -0.012 -0.017 -0.008 - 10.45 51.08 1968 -0.006 -0.013 -0.001 0.010 0.065 0.050 0.020 -0.002 -0.011 -0.006 -0.016 -0.005 - 10.45 51.08 1969 -0.008 -0.007 -0.004 -0.001 0.065 0.084 0.016 -0.050 0.031 -0.005 -0.023 -0.004 - 10.45 51.08 1970 -0.003 -0.003 -0.007 -0.008 0.054 0.040 0.018 0.014 0.017 -0.016 -0.018 -0.014 - 10.45 51.08 1971 -0.006 -0.020 -0.009 -0.003 0.021 0.032 0.023 -0.077 -0.046 -0.035 -0.019 -0.017 - 10.45 51.08 1972 -0.008 -0.011 -0.017 -0.003 0.064 0.086 0.012 0.042 0.020 0.000 -0.018 -0.012 - 10.45 51.08 1973 -0.008 -0.016 -0.017 -0.016 0.051 0.029 -0.040 -0.116 -0.033 -0.006 -0.013 -0.007 - 10.45 51.08 1974 -0.024 -0.022 -0.005 0.017 0.068 0.071 0.059 -0.003 -0.004 -0.015 -0.021 -0.021 - 10.45 51.08 1975 -0.033 -0.018 -0.022 0.008 0.060 0.050 0.013 -0.045 -0.017 -0.028 -0.018 -0.014 - 10.45 51.08 1976 -0.021 -0.005 -0.012 -0.006 0.065 0.041 -0.166 -0.066 -0.059 -0.027 -0.017 -0.012 - 10.45 51.08 1977 -0.008 -0.020 -0.019 0.016 0.085 0.032 0.055 0.033 0.019 0.004 -0.019 -0.011 - 10.45 51.08 1978 -0.017 -0.006 -0.021 0.003 0.054 0.032 0.051 0.005 0.008 0.005 -0.019 -0.010 - 10.45 51.08 1979 -0.003 -0.003 -0.016 -0.009 0.048 0.009 0.038 0.022 0.002 -0.010 -0.012 -0.020 - 10.45 51.08 1980 -0.006 -0.018 -0.020 -0.010 0.072 0.046 0.037 -0.040 -0.011 -0.020 -0.022 -0.011 - 10.45 51.08 1981 -0.009 -0.008 -0.005 0.022 0.079 0.055 0.013 0.031 0.022 0.004 -0.021 -0.007 - 10.45 51.08 1982 -0.006 -0.010 -0.023 -0.007 0.052 0.001 -0.011 -0.115 -0.116 -0.031 -0.016 -0.017 - 10.45 51.08 1983 -0.028 -0.009 -0.019 0.026 0.070 0.072 -0.007 -0.031 -0.024 -0.029 -0.024 -0.011 - 10.45 51.08 1984 -0.026 -0.010 -0.013 -0.004 0.043 0.081 0.057 0.030 0.013 0.008 -0.012 -0.013 - 10.45 51.08 1985 -0.003 -0.006 -0.016 -0.002 0.049 0.050 0.052 0.027 -0.017 -0.067 -0.014 -0.020 - 10.45 51.08 1986 -0.010 -0.003 -0.014 -0.007 0.057 0.083 0.026 -0.001 0.037 0.004 -0.006 -0.015 - 10.45 51.08 1987 -0.005 -0.005 -0.006 0.009 0.073 0.086 0.053 0.053 0.012 0.011 -0.013 -0.011 - 10.45 51.08 1988 -0.027 -0.019 -0.016 0.001 0.063 0.029 0.055 -0.014 -0.041 -0.037 -0.019 -0.016 - 10.45 51.08 1989 -0.024 -0.018 -0.018 0.011 0.110 0.074 -0.074 -0.064 -0.040 -0.003 -0.019 -0.014 - 10.45 51.08 1990 -0.017 -0.026 0.005 0.044 0.105 0.068 0.043 -0.090 0.005 -0.011 -0.030 -0.011 - 10.45 51.08 1991 -0.023 -0.005 -0.022 0.033 0.073 0.078 -0.101 0.023 -0.065 -0.036 -0.021 -0.011 - 10.45 51.08 1992 -0.019 -0.015 -0.022 0.009 0.075 0.016 0.033 -0.071 0.026 -0.010 -0.020 -0.013 - 10.45 51.08 1993 -0.018 -0.005 -0.007 0.033 0.044 0.081 0.079 0.049 0.028 0.001 -0.010 -0.012 - 10.45 51.08 1994 -0.021 -0.011 -0.014 0.025 0.079 0.088 0.025 -0.002 0.038 0.013 -0.015 -0.019 - 10.45 51.08 1995 -0.011 -0.024 -0.015 0.019 0.086 0.083 0.054 0.023 0.024 0.009 -0.015 -0.005 - 10.45 51.08 1996 -0.003 -0.004 -0.012 0.003 0.063 0.078 0.083 0.034 0.028 0.011 -0.013 -0.008 - 10.45 51.08 1997 -0.005 -0.020 -0.013 0.023 0.065 0.060 0.040 0.014 0.027 -0.006 -0.014 -0.014 - 10.45 51.08 1998 -0.028 -0.016 -0.009 0.044 0.086 0.052 0.041 -0.044 0.022 0.001 -0.016 -0.011 - 10.45 51.08 1999 -0.026 -0.010 -0.016 0.030 0.088 0.079 0.055 0.029 0.002 -0.009 -0.015 -0.016 - 10.45 51.08 2000 -0.015 -0.021 -0.013 0.032 0.068 0.038 0.035 0.006 0.012 0.006 -0.024 -0.024 - 10.45 51.08 2001 -0.016 -0.023 -0.014 0.025 0.108 0.072 0.073 -0.035 0.010 -0.000 -0.015 -0.012 - 10.45 51.08 2002 -0.012 -0.026 0.006 0.053 0.079 0.076 0.038 0.025 0.023 -0.001 -0.025 -0.011 - 10.45 51.08 2003 -0.013 -0.007 -0.020 0.018 0.055 0.077 0.008 -0.126 0.027 -0.001 -0.023 -0.016 - 10.45 51.08 2004 -0.016 -0.021 0.000 0.062 0.105 0.080 0.068 -0.038 -0.061 0.007 -0.030 -0.012 - 10.45 51.08 2005 -0.024 -0.006 -0.008 0.040 0.090 0.051 -0.010 0.028 0.017 0.015 -0.021 -0.014 - 10.45 51.08 2006 -0.007 -0.008 -0.008 0.017 0.091 0.102 0.001 0.017 0.016 -0.005 -0.022 -0.027 - 10.45 51.08 2007 -0.035 -0.023 -0.025 0.061 0.081 0.081 0.071 0.067 0.043 0.016 -0.011 -0.014 - 10.45 51.08 2008 -0.026 -0.018 -0.007 0.036 0.095 0.064 0.037 -0.021 -0.028 0.012 -0.022 -0.013 - 10.45 51.08 2009 -0.006 -0.012 -0.026 0.030 0.094 0.074 0.046 0.020 0.012 -0.002 -0.022 -0.014 - 10.45 51.08 2010 -0.004 -0.007 -0.013 0.045 0.071 0.093 0.014 0.041 0.037 0.022 -0.018 -0.004 - 10.45 51.08 2011 -0.016 -0.013 -0.005 0.054 0.069 0.046 0.059 0.021 0.032 0.011 -0.022 -0.021 - 10.45 51.08 2012 -0.024 -0.007 -0.016 0.023 0.075 0.063 0.068 0.034 0.014 0.007 -0.022 -0.015 diff --git a/rLPJGUESS/inst/extdata/outputsForTests/run_patcharea/outDirectory/mnpp.out b/rLPJGUESS/inst/extdata/outputsForTests/run_patcharea/outDirectory/mnpp.out deleted file mode 100644 index fac2cb3..0000000 --- a/rLPJGUESS/inst/extdata/outputsForTests/run_patcharea/outDirectory/mnpp.out +++ /dev/null @@ -1,63 +0,0 @@ - Lon Lat Year Jan Feb Mar Apr May Jun Jul Aug Sep Oct Nov Dec - 10.45 51.08 1951 -0.013 -0.012 -0.012 0.012 0.093 0.115 0.103 0.072 0.049 0.020 -0.011 -0.014 - 10.45 51.08 1952 -0.010 -0.009 -0.014 0.030 0.112 0.118 0.092 0.062 0.039 0.012 -0.009 -0.009 - 10.45 51.08 1953 -0.008 -0.010 -0.008 0.069 0.094 0.084 0.090 0.081 0.057 0.018 -0.015 -0.016 - 10.45 51.08 1954 -0.007 -0.005 -0.016 0.006 0.103 0.102 0.083 0.071 0.040 0.018 -0.009 -0.017 - 10.45 51.08 1955 -0.007 -0.007 -0.010 0.006 0.097 0.104 0.072 0.059 0.048 0.018 -0.008 -0.014 - 10.45 51.08 1956 -0.011 -0.001 -0.014 0.001 0.098 0.089 0.088 0.086 0.055 0.014 -0.010 -0.015 - 10.45 51.08 1957 -0.011 -0.015 -0.002 0.045 0.095 0.113 0.066 0.079 0.044 0.017 -0.017 -0.010 - 10.45 51.08 1958 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1959 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1960 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1961 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1962 -0.000 0.000 0.002 0.047 0.090 0.096 0.097 0.067 0.042 0.007 -0.003 -0.000 - 10.45 51.08 1963 -0.000 -0.000 0.005 0.046 0.115 0.103 0.109 0.076 0.049 0.009 -0.003 -0.002 - 10.45 51.08 1964 -0.001 0.000 0.001 0.043 0.132 0.136 0.117 0.085 0.061 0.017 -0.002 -0.002 - 10.45 51.08 1965 -0.002 -0.001 0.004 0.033 0.108 0.135 0.119 0.121 0.077 0.033 0.000 -0.002 - 10.45 51.08 1966 -0.001 0.003 0.008 0.055 0.157 0.151 0.129 0.118 0.078 0.038 -0.002 -0.003 - 10.45 51.08 1967 -0.003 0.000 0.013 0.038 0.149 0.144 0.165 0.112 0.072 0.041 0.002 -0.003 - 10.45 51.08 1968 -0.003 -0.003 0.010 0.063 0.131 0.155 0.150 0.110 0.070 0.031 -0.001 -0.003 - 10.45 51.08 1969 -0.004 -0.002 -0.003 0.024 0.134 0.160 0.145 0.088 0.087 0.041 0.004 -0.002 - 10.45 51.08 1970 -0.003 -0.003 -0.002 0.016 0.119 0.163 0.150 0.110 0.090 0.022 0.000 -0.005 - 10.45 51.08 1971 -0.004 -0.004 -0.001 0.046 0.128 0.136 0.146 0.061 0.028 0.017 0.001 -0.007 - 10.45 51.08 1972 -0.003 -0.004 0.007 0.041 0.127 0.169 0.124 0.113 0.072 0.030 0.002 -0.005 - 10.45 51.08 1973 -0.004 -0.004 0.000 0.014 0.135 0.152 0.102 -0.001 0.061 0.031 -0.001 -0.005 - 10.45 51.08 1974 -0.006 -0.004 0.015 0.074 0.132 0.153 0.140 0.109 0.086 0.014 -0.007 -0.008 - 10.45 51.08 1975 -0.008 -0.004 -0.002 0.033 0.135 0.141 0.147 0.088 0.076 0.021 -0.001 -0.005 - 10.45 51.08 1976 -0.006 -0.004 -0.003 0.036 0.153 0.140 -0.013 0.029 0.013 0.030 0.000 -0.005 - 10.45 51.08 1977 -0.005 -0.005 0.011 0.038 0.156 0.115 0.138 0.094 0.067 0.036 0.002 -0.005 - 10.45 51.08 1978 -0.005 -0.003 0.002 0.039 0.116 0.144 0.143 0.113 0.070 0.037 -0.004 -0.006 - 10.45 51.08 1979 -0.003 -0.003 -0.006 0.017 0.111 0.141 0.131 0.120 0.078 0.036 -0.001 -0.009 - 10.45 51.08 1980 -0.003 -0.006 -0.005 0.018 0.128 0.154 0.121 0.068 0.064 0.023 -0.009 -0.006 - 10.45 51.08 1981 -0.004 -0.004 0.015 0.069 0.131 0.134 0.121 0.108 0.082 0.032 -0.009 -0.004 - 10.45 51.08 1982 -0.005 -0.004 -0.007 0.032 0.127 0.125 0.110 -0.004 -0.032 0.019 0.008 -0.007 - 10.45 51.08 1983 -0.008 -0.003 0.000 0.053 0.124 0.155 0.119 0.072 0.050 0.019 -0.007 -0.006 - 10.45 51.08 1984 -0.006 -0.004 -0.006 0.020 0.087 0.141 0.135 0.108 0.062 0.038 0.001 -0.006 - 10.45 51.08 1985 -0.002 -0.003 -0.006 0.041 0.129 0.141 0.152 0.123 0.050 -0.016 -0.001 -0.009 - 10.45 51.08 1986 -0.005 -0.001 -0.006 0.012 0.132 0.151 0.138 0.102 0.081 0.045 0.008 -0.007 - 10.45 51.08 1987 -0.003 -0.004 -0.005 0.045 0.128 0.131 0.145 0.111 0.073 0.040 0.001 -0.007 - 10.45 51.08 1988 -0.009 -0.007 -0.006 0.034 0.150 0.119 0.146 0.087 0.023 0.010 -0.001 -0.009 - 10.45 51.08 1989 -0.008 -0.007 0.007 0.049 0.180 0.162 0.027 0.028 0.028 0.043 -0.002 -0.009 - 10.45 51.08 1990 -0.008 -0.004 0.035 0.074 0.184 0.130 0.125 0.012 0.067 0.033 -0.011 -0.006 - 10.45 51.08 1991 -0.008 -0.004 0.008 0.070 0.118 0.153 0.007 0.101 0.003 0.009 -0.005 -0.006 - 10.45 51.08 1992 -0.006 -0.007 -0.001 0.037 0.153 0.115 0.116 0.030 0.083 0.022 -0.008 -0.007 - 10.45 51.08 1993 -0.009 -0.003 0.006 0.074 0.135 0.141 0.136 0.119 0.069 0.028 -0.005 -0.008 - 10.45 51.08 1994 -0.008 -0.005 0.005 0.051 0.148 0.154 0.133 0.102 0.079 0.034 0.001 -0.010 - 10.45 51.08 1995 -0.007 -0.009 -0.000 0.047 0.141 0.131 0.145 0.121 0.065 0.040 -0.003 -0.004 - 10.45 51.08 1996 -0.003 -0.004 -0.006 0.034 0.108 0.156 0.141 0.104 0.060 0.036 0.001 -0.005 - 10.45 51.08 1997 -0.004 -0.009 0.012 0.047 0.138 0.147 0.114 0.106 0.095 0.028 -0.005 -0.009 - 10.45 51.08 1998 -0.011 -0.006 0.012 0.081 0.159 0.141 0.122 0.047 0.063 0.020 -0.009 -0.008 - 10.45 51.08 1999 -0.011 -0.006 0.001 0.066 0.161 0.153 0.126 0.109 0.080 0.029 -0.002 -0.010 - 10.45 51.08 2000 -0.008 -0.010 0.003 0.068 0.162 0.124 0.105 0.088 0.065 0.037 -0.007 -0.012 - 10.45 51.08 2001 -0.008 -0.010 -0.001 0.046 0.171 0.139 0.147 0.062 0.059 0.039 -0.003 -0.008 - 10.45 51.08 2002 -0.009 -0.004 0.023 0.077 0.130 0.143 0.109 0.088 0.075 0.018 -0.014 -0.008 - 10.45 51.08 2003 -0.008 -0.004 -0.004 0.054 0.141 0.170 0.104 -0.022 0.084 0.026 -0.011 -0.009 - 10.45 51.08 2004 -0.007 -0.009 0.014 0.095 0.144 0.150 0.137 0.055 -0.002 0.044 -0.013 -0.008 - 10.45 51.08 2005 -0.010 -0.006 0.001 0.079 0.147 0.135 0.082 0.095 0.083 0.052 0.001 -0.008 - 10.45 51.08 2006 -0.005 -0.006 -0.006 0.046 0.159 0.166 0.105 0.092 0.074 0.038 -0.001 -0.014 - 10.45 51.08 2007 -0.015 -0.012 -0.004 0.104 0.151 0.146 0.125 0.112 0.076 0.036 -0.003 -0.010 - 10.45 51.08 2008 -0.014 -0.006 0.011 0.056 0.163 0.151 0.120 0.058 0.021 0.039 -0.011 -0.009 - 10.45 51.08 2009 -0.005 -0.007 -0.011 0.078 0.146 0.129 0.124 0.110 0.072 0.023 -0.010 -0.008 - 10.45 51.08 2010 -0.004 -0.006 0.000 0.084 0.110 0.165 0.114 0.087 0.071 0.040 -0.006 -0.004 - 10.45 51.08 2011 -0.010 -0.008 0.009 0.109 0.140 0.131 0.123 0.087 0.080 0.044 -0.010 -0.013 - 10.45 51.08 2012 -0.011 -0.006 0.010 0.057 0.148 0.124 0.123 0.108 0.074 0.040 -0.007 -0.011 diff --git a/rLPJGUESS/inst/extdata/outputsForTests/run_patcharea/outDirectory/mpet.out b/rLPJGUESS/inst/extdata/outputsForTests/run_patcharea/outDirectory/mpet.out deleted file mode 100644 index 695acbd..0000000 --- a/rLPJGUESS/inst/extdata/outputsForTests/run_patcharea/outDirectory/mpet.out +++ /dev/null @@ -1,63 +0,0 @@ - Lon Lat Year Jan Feb Mar Apr May Jun Jul Aug Sep Oct Nov Dec - 10.45 51.08 1951 5.170 9.933 21.795 64.098 86.981 116.122 120.979 100.254 67.242 31.460 10.032 4.563 - 10.45 51.08 1952 4.893 8.255 20.486 68.757 97.292 115.532 131.815 101.842 48.024 26.871 8.848 3.651 - 10.45 51.08 1953 4.280 8.857 37.647 76.266 110.291 99.606 116.683 102.045 65.824 31.861 8.034 4.552 - 10.45 51.08 1954 4.306 7.718 24.245 50.735 104.207 114.455 89.256 92.079 59.911 32.043 10.934 4.391 - 10.45 51.08 1955 4.998 8.143 20.583 53.276 94.176 104.355 97.405 82.490 60.015 29.520 8.469 4.303 - 10.45 51.08 1956 5.371 5.153 23.254 44.422 105.818 90.745 109.969 88.883 60.593 30.754 8.235 4.284 - 10.45 51.08 1957 5.314 10.454 33.458 62.686 90.223 133.810 112.799 89.884 53.592 28.043 7.390 4.020 - 10.45 51.08 1958 8.643 17.440 28.181 53.269 100.490 105.370 121.985 109.485 70.561 33.403 10.488 7.117 - 10.45 51.08 1959 4.484 7.982 27.401 63.462 91.030 109.830 122.645 82.408 70.226 32.103 6.140 3.162 - 10.45 51.08 1960 7.902 14.436 31.033 63.180 97.437 130.850 112.130 92.674 57.398 29.504 13.279 6.562 - 10.45 51.08 1961 3.472 11.157 27.831 47.896 68.640 105.849 91.625 80.743 63.697 26.634 5.773 3.163 - 10.45 51.08 1962 1.317 1.934 5.120 35.727 54.944 84.243 74.358 70.646 42.745 17.085 2.925 0.640 - 10.45 51.08 1963 0.432 0.749 6.174 32.212 71.596 80.529 93.119 67.748 42.829 14.948 5.816 0.611 - 10.45 51.08 1964 0.833 2.393 4.399 35.121 84.857 113.548 101.920 72.263 48.837 16.163 2.246 1.122 - 10.45 51.08 1965 2.146 2.653 10.071 35.015 70.044 91.381 82.827 82.030 47.357 22.677 4.059 1.685 - 10.45 51.08 1966 2.084 7.308 15.408 41.956 94.646 107.330 83.162 80.864 47.575 26.932 3.772 2.001 - 10.45 51.08 1967 1.432 4.040 16.798 30.693 85.329 82.583 111.739 73.076 42.239 24.925 4.653 0.960 - 10.45 51.08 1968 0.421 1.074 13.028 47.050 63.201 88.197 93.865 69.079 39.818 18.377 3.603 0.209 - 10.45 51.08 1969 0.508 0.768 1.001 24.727 76.906 95.261 108.851 81.430 51.034 22.415 6.612 0.132 - 10.45 51.08 1970 0.206 0.755 2.829 16.544 67.193 116.733 100.109 76.411 55.621 18.061 6.466 0.630 - 10.45 51.08 1971 0.445 0.784 3.555 37.367 81.201 78.135 128.787 101.026 54.135 27.013 5.280 0.441 - 10.45 51.08 1972 0.110 0.664 12.243 29.232 70.270 98.565 91.907 73.691 40.933 19.545 4.876 0.276 - 10.45 51.08 1973 0.186 0.531 6.452 15.820 79.988 97.329 98.264 98.428 53.956 21.062 3.954 0.187 - 10.45 51.08 1974 0.375 1.412 12.779 45.821 68.608 85.160 83.430 80.244 53.667 13.987 0.535 0.415 - 10.45 51.08 1975 0.414 0.414 4.105 28.114 76.155 81.943 105.765 104.520 52.761 16.913 3.128 0.118 - 10.45 51.08 1976 0.238 0.365 2.245 31.304 90.068 110.637 121.990 88.197 39.404 20.404 4.604 0.100 - 10.45 51.08 1977 0.142 0.657 10.979 26.340 79.533 68.105 86.266 59.500 40.238 20.777 4.737 0.105 - 10.45 51.08 1978 0.074 0.363 6.878 29.498 64.602 84.801 86.407 74.500 38.781 21.368 2.276 0.111 - 10.45 51.08 1979 0.088 0.063 1.259 19.114 77.098 96.268 77.089 77.153 51.315 22.070 3.915 0.154 - 10.45 51.08 1980 0.104 0.220 1.504 21.438 78.827 89.738 71.643 86.160 51.123 20.719 0.870 0.248 - 10.45 51.08 1981 0.321 0.077 14.323 42.584 77.637 83.972 78.416 74.592 49.307 20.165 0.477 0.035 - 10.45 51.08 1982 0.032 0.074 1.889 32.281 80.806 100.851 104.862 89.704 62.732 19.939 7.354 0.031 - 10.45 51.08 1983 0.063 0.097 5.174 35.406 63.104 95.142 116.048 84.045 50.285 21.205 3.811 0.024 - 10.45 51.08 1984 0.024 0.030 0.375 26.355 49.947 75.639 82.487 74.613 36.835 20.726 4.394 0.017 - 10.45 51.08 1985 0.015 0.033 0.553 32.990 76.924 76.262 105.641 77.763 49.148 21.439 2.437 0.078 - 10.45 51.08 1986 0.069 0.004 1.484 13.576 81.121 92.639 92.524 79.539 41.073 24.295 6.064 0.017 - 10.45 51.08 1987 0.003 0.007 0.556 37.569 63.849 69.591 95.021 68.041 47.816 21.411 4.258 0.006 - 10.45 51.08 1988 0.000 0.002 0.779 32.155 89.909 80.417 99.716 91.011 45.915 20.341 4.166 0.000 - 10.45 51.08 1989 0.010 0.115 12.800 30.075 104.509 96.534 94.386 84.925 47.496 23.519 3.526 0.000 - 10.45 51.08 1990 0.000 3.543 22.786 39.601 101.086 78.446 97.848 91.048 36.003 21.867 0.000 0.000 - 10.45 51.08 1991 0.000 0.006 11.306 40.536 57.185 82.629 115.138 82.329 59.035 23.942 1.830 0.000 - 10.45 51.08 1992 0.000 0.113 5.084 29.860 94.427 81.706 95.958 80.139 45.721 13.962 0.839 0.000 - 10.45 51.08 1993 0.036 0.162 8.524 48.402 87.537 82.959 84.105 75.733 36.052 17.222 0.540 0.000 - 10.45 51.08 1994 0.000 0.048 8.728 34.354 77.304 92.385 113.531 77.876 42.702 17.766 4.160 0.000 - 10.45 51.08 1995 0.000 0.445 5.419 32.551 75.115 71.941 112.074 94.420 37.297 23.292 2.342 0.000 - 10.45 51.08 1996 0.000 0.000 0.184 35.239 55.014 96.595 82.817 73.292 30.088 18.869 5.237 0.000 - 10.45 51.08 1997 0.000 0.647 12.812 34.265 78.182 95.546 83.244 89.810 57.007 18.911 1.991 0.000 - 10.45 51.08 1998 0.000 2.299 12.450 43.566 90.296 91.768 79.311 82.507 38.321 14.477 0.000 0.000 - 10.45 51.08 1999 0.007 0.319 7.599 39.581 89.097 88.481 97.851 79.427 62.368 17.278 3.165 0.000 - 10.45 51.08 2000 0.000 0.597 8.923 47.921 98.451 103.574 62.998 88.694 43.437 22.061 2.627 0.000 - 10.45 51.08 2001 0.000 0.195 4.989 30.245 99.265 78.023 108.913 84.372 33.506 26.173 3.678 0.000 - 10.45 51.08 2002 0.114 4.121 16.648 40.394 73.446 94.175 80.096 75.155 47.412 14.093 0.000 0.000 - 10.45 51.08 2003 0.000 0.000 7.468 45.043 80.895 121.122 97.368 109.102 52.526 15.943 1.318 0.000 - 10.45 51.08 2004 0.000 0.655 13.375 51.225 70.614 85.276 87.292 89.369 56.060 24.095 0.000 0.000 - 10.45 51.08 2005 0.000 0.000 7.281 46.276 82.711 100.163 94.449 66.835 58.137 26.511 4.623 0.000 - 10.45 51.08 2006 0.000 0.000 1.676 33.779 85.515 105.375 133.280 59.220 63.577 23.940 5.512 0.000 - 10.45 51.08 2007 0.000 0.047 8.689 65.972 90.938 97.524 91.533 80.752 42.611 18.653 2.868 0.000 - 10.45 51.08 2008 0.053 2.359 11.360 33.369 90.434 102.215 97.388 75.775 40.867 21.606 1.135 0.000 - 10.45 51.08 2009 0.000 0.000 0.863 52.200 74.564 66.992 85.991 83.307 45.902 14.955 3.052 0.000 - 10.45 51.08 2010 0.000 0.000 7.700 46.861 51.581 97.579 108.168 60.336 38.346 19.748 2.673 0.000 - 10.45 51.08 2011 0.000 0.246 13.003 58.022 89.795 86.364 74.684 65.183 50.691 24.319 0.821 0.000 - 10.45 51.08 2012 0.000 0.004 16.783 32.565 85.000 70.754 82.383 82.592 47.038 21.202 2.062 0.000 diff --git a/rLPJGUESS/inst/extdata/outputsForTests/run_patcharea/outDirectory/mra.out b/rLPJGUESS/inst/extdata/outputsForTests/run_patcharea/outDirectory/mra.out deleted file mode 100644 index 5c04d00..0000000 --- a/rLPJGUESS/inst/extdata/outputsForTests/run_patcharea/outDirectory/mra.out +++ /dev/null @@ -1,63 +0,0 @@ - Lon Lat Year Jan Feb Mar Apr May Jun Jul Aug Sep Oct Nov Dec - 10.45 51.08 1951 0.013 0.012 0.014 0.031 0.074 0.098 0.107 0.098 0.077 0.037 0.025 0.014 - 10.45 51.08 1952 0.010 0.009 0.014 0.051 0.085 0.099 0.113 0.102 0.055 0.035 0.014 0.009 - 10.45 51.08 1953 0.008 0.010 0.022 0.057 0.089 0.092 0.107 0.099 0.074 0.049 0.020 0.016 - 10.45 51.08 1954 0.007 0.005 0.018 0.025 0.083 0.101 0.087 0.092 0.071 0.048 0.023 0.017 - 10.45 51.08 1955 0.007 0.007 0.012 0.027 0.076 0.092 0.095 0.088 0.070 0.040 0.019 0.014 - 10.45 51.08 1956 0.011 0.001 0.015 0.023 0.081 0.082 0.098 0.086 0.070 0.042 0.016 0.015 - 10.45 51.08 1957 0.011 0.015 0.026 0.043 0.070 0.106 0.102 0.088 0.061 0.041 0.018 0.010 - 10.45 51.08 1958 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1959 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1960 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1961 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1962 0.001 0.001 0.002 0.023 0.049 0.053 0.061 0.053 0.038 0.026 0.007 0.000 - 10.45 51.08 1963 0.000 0.000 0.003 0.024 0.060 0.063 0.071 0.060 0.045 0.025 0.016 0.003 - 10.45 51.08 1964 0.001 0.002 0.002 0.022 0.065 0.073 0.070 0.060 0.048 0.023 0.006 0.003 - 10.45 51.08 1965 0.003 0.002 0.005 0.019 0.052 0.070 0.068 0.068 0.047 0.028 0.006 0.003 - 10.45 51.08 1966 0.003 0.007 0.009 0.030 0.075 0.080 0.071 0.069 0.049 0.034 0.005 0.004 - 10.45 51.08 1967 0.005 0.007 0.014 0.023 0.075 0.078 0.099 0.078 0.055 0.042 0.012 0.005 - 10.45 51.08 1968 0.004 0.005 0.013 0.039 0.071 0.090 0.095 0.081 0.059 0.038 0.012 0.003 - 10.45 51.08 1969 0.006 0.003 0.004 0.021 0.077 0.093 0.103 0.083 0.066 0.042 0.021 0.002 - 10.45 51.08 1970 0.003 0.004 0.007 0.018 0.068 0.102 0.099 0.088 0.071 0.035 0.021 0.007 - 10.45 51.08 1971 0.005 0.006 0.008 0.031 0.079 0.085 0.103 0.087 0.051 0.038 0.016 0.009 - 10.45 51.08 1972 0.003 0.006 0.014 0.029 0.072 0.097 0.095 0.086 0.056 0.031 0.016 0.006 - 10.45 51.08 1973 0.005 0.005 0.010 0.015 0.075 0.094 0.088 0.065 0.066 0.034 0.013 0.005 - 10.45 51.08 1974 0.008 0.007 0.016 0.042 0.071 0.087 0.089 0.087 0.068 0.024 0.009 0.010 - 10.45 51.08 1975 0.009 0.005 0.009 0.024 0.075 0.084 0.102 0.088 0.070 0.032 0.012 0.006 - 10.45 51.08 1976 0.007 0.004 0.006 0.026 0.083 0.094 0.072 0.064 0.045 0.040 0.015 0.005 - 10.45 51.08 1977 0.005 0.007 0.016 0.025 0.079 0.077 0.091 0.074 0.056 0.040 0.016 0.006 - 10.45 51.08 1978 0.005 0.004 0.012 0.026 0.065 0.087 0.088 0.083 0.055 0.038 0.012 0.006 - 10.45 51.08 1979 0.003 0.003 0.008 0.019 0.066 0.096 0.086 0.086 0.064 0.038 0.011 0.009 - 10.45 51.08 1980 0.003 0.007 0.008 0.018 0.066 0.092 0.081 0.078 0.062 0.034 0.010 0.006 - 10.45 51.08 1981 0.004 0.004 0.020 0.042 0.078 0.089 0.087 0.085 0.066 0.037 0.011 0.004 - 10.45 51.08 1982 0.005 0.004 0.009 0.025 0.074 0.091 0.095 0.069 0.053 0.040 0.023 0.007 - 10.45 51.08 1983 0.008 0.003 0.011 0.035 0.071 0.094 0.100 0.083 0.060 0.038 0.012 0.006 - 10.45 51.08 1984 0.006 0.004 0.006 0.020 0.054 0.082 0.087 0.085 0.055 0.042 0.016 0.006 - 10.45 51.08 1985 0.003 0.003 0.007 0.030 0.076 0.082 0.098 0.087 0.058 0.030 0.009 0.009 - 10.45 51.08 1986 0.005 0.001 0.008 0.016 0.083 0.092 0.097 0.086 0.057 0.044 0.021 0.007 - 10.45 51.08 1987 0.003 0.004 0.005 0.033 0.069 0.079 0.099 0.081 0.067 0.040 0.016 0.007 - 10.45 51.08 1988 0.009 0.007 0.008 0.028 0.090 0.084 0.104 0.090 0.055 0.037 0.015 0.009 - 10.45 51.08 1989 0.008 0.007 0.017 0.035 0.098 0.098 0.073 0.074 0.058 0.047 0.014 0.009 - 10.45 51.08 1990 0.008 0.012 0.029 0.043 0.100 0.086 0.095 0.077 0.058 0.041 0.011 0.006 - 10.45 51.08 1991 0.008 0.004 0.019 0.042 0.065 0.090 0.079 0.094 0.058 0.038 0.012 0.006 - 10.45 51.08 1992 0.006 0.007 0.011 0.029 0.089 0.086 0.096 0.079 0.065 0.029 0.011 0.007 - 10.45 51.08 1993 0.009 0.004 0.013 0.048 0.088 0.090 0.092 0.088 0.056 0.034 0.006 0.008 - 10.45 51.08 1994 0.008 0.005 0.016 0.035 0.086 0.095 0.113 0.092 0.063 0.033 0.018 0.010 - 10.45 51.08 1995 0.007 0.010 0.011 0.035 0.081 0.083 0.112 0.103 0.059 0.048 0.012 0.004 - 10.45 51.08 1996 0.003 0.004 0.007 0.033 0.067 0.101 0.094 0.091 0.051 0.040 0.019 0.005 - 10.45 51.08 1997 0.004 0.010 0.019 0.032 0.085 0.097 0.094 0.105 0.078 0.039 0.013 0.009 - 10.45 51.08 1998 0.011 0.012 0.019 0.053 0.098 0.102 0.096 0.085 0.064 0.035 0.009 0.008 - 10.45 51.08 1999 0.011 0.006 0.016 0.045 0.097 0.100 0.110 0.098 0.086 0.041 0.015 0.010 - 10.45 51.08 2000 0.008 0.011 0.017 0.051 0.107 0.102 0.087 0.101 0.071 0.050 0.020 0.012 - 10.45 51.08 2001 0.008 0.010 0.013 0.036 0.104 0.093 0.117 0.100 0.061 0.057 0.017 0.008 - 10.45 51.08 2002 0.009 0.015 0.025 0.048 0.089 0.107 0.100 0.101 0.073 0.035 0.014 0.008 - 10.45 51.08 2003 0.008 0.004 0.017 0.042 0.096 0.125 0.107 0.095 0.077 0.034 0.018 0.009 - 10.45 51.08 2004 0.007 0.011 0.020 0.058 0.085 0.100 0.104 0.097 0.059 0.051 0.013 0.008 - 10.45 51.08 2005 0.010 0.006 0.015 0.052 0.093 0.100 0.099 0.089 0.084 0.055 0.020 0.008 - 10.45 51.08 2006 0.005 0.006 0.010 0.039 0.097 0.111 0.124 0.088 0.087 0.056 0.027 0.014 - 10.45 51.08 2007 0.015 0.012 0.019 0.067 0.101 0.113 0.109 0.100 0.069 0.043 0.015 0.010 - 10.45 51.08 2008 0.014 0.012 0.019 0.041 0.103 0.113 0.112 0.096 0.060 0.048 0.017 0.009 - 10.45 51.08 2009 0.005 0.007 0.013 0.059 0.093 0.089 0.107 0.107 0.074 0.038 0.022 0.008 - 10.45 51.08 2010 0.004 0.006 0.018 0.052 0.071 0.109 0.118 0.089 0.065 0.042 0.018 0.004 - 10.45 51.08 2011 0.010 0.008 0.019 0.071 0.095 0.103 0.100 0.097 0.082 0.051 0.013 0.013 - 10.45 51.08 2012 0.011 0.006 0.026 0.045 0.103 0.095 0.109 0.111 0.078 0.048 0.018 0.011 diff --git a/rLPJGUESS/inst/extdata/outputsForTests/run_patcharea/outDirectory/mrh.out b/rLPJGUESS/inst/extdata/outputsForTests/run_patcharea/outDirectory/mrh.out deleted file mode 100644 index a71bf8c..0000000 --- a/rLPJGUESS/inst/extdata/outputsForTests/run_patcharea/outDirectory/mrh.out +++ /dev/null @@ -1,63 +0,0 @@ - Lon Lat Year Jan Feb Mar Apr May Jun Jul Aug Sep Oct Nov Dec - 10.45 51.08 1951 0.010 0.007 0.007 0.023 0.045 0.042 0.059 0.049 0.045 0.020 0.011 0.006 - 10.45 51.08 1952 0.007 0.001 0.009 0.031 0.040 0.054 0.084 0.070 0.024 0.012 0.007 0.001 - 10.45 51.08 1953 0.002 0.003 0.015 0.038 0.056 0.053 0.056 0.056 0.046 0.030 0.012 0.008 - 10.45 51.08 1954 0.002 0.000 0.011 0.018 0.045 0.066 0.043 0.043 0.039 0.020 0.011 0.006 - 10.45 51.08 1955 0.002 0.003 0.002 0.017 0.044 0.049 0.053 0.041 0.039 0.022 0.007 0.004 - 10.45 51.08 1956 0.008 0.000 0.004 0.016 0.042 0.043 0.044 0.042 0.037 0.024 0.007 0.006 - 10.45 51.08 1957 0.003 0.011 0.019 0.025 0.036 0.060 0.063 0.042 0.030 0.016 0.010 0.003 - 10.45 51.08 1958 0.010 0.015 0.004 0.022 0.078 0.090 0.113 0.116 0.106 0.058 0.023 0.015 - 10.45 51.08 1959 0.010 0.003 0.027 0.045 0.065 0.080 0.150 0.110 0.088 0.055 0.016 0.008 - 10.45 51.08 1960 0.014 0.006 0.026 0.057 0.085 0.141 0.132 0.113 0.082 0.043 0.028 0.013 - 10.45 51.08 1961 0.003 0.011 0.030 0.036 0.043 0.066 0.100 0.080 0.096 0.072 0.022 0.008 - 10.45 51.08 1962 0.007 0.007 0.001 0.029 0.053 0.087 0.093 0.116 0.086 0.059 0.020 0.003 - 10.45 51.08 1963 0.000 0.000 0.010 0.040 0.089 0.125 0.135 0.107 0.089 0.041 0.024 0.004 - 10.45 51.08 1964 0.000 0.004 0.004 0.040 0.083 0.146 0.145 0.133 0.101 0.051 0.021 0.012 - 10.45 51.08 1965 0.009 0.001 0.006 0.039 0.063 0.084 0.106 0.101 0.073 0.054 0.014 0.008 - 10.45 51.08 1966 0.004 0.010 0.021 0.036 0.093 0.115 0.068 0.082 0.060 0.059 0.010 0.008 - 10.45 51.08 1967 0.008 0.015 0.026 0.031 0.087 0.073 0.129 0.121 0.062 0.054 0.019 0.005 - 10.45 51.08 1968 0.003 0.010 0.011 0.053 0.066 0.106 0.130 0.112 0.081 0.036 0.015 0.002 - 10.45 51.08 1969 0.004 0.005 0.001 0.025 0.069 0.076 0.130 0.138 0.057 0.046 0.026 0.002 - 10.45 51.08 1970 0.000 0.000 0.005 0.025 0.065 0.123 0.132 0.096 0.073 0.039 0.018 0.009 - 10.45 51.08 1971 0.003 0.016 0.009 0.049 0.107 0.104 0.123 0.138 0.074 0.052 0.020 0.010 - 10.45 51.08 1972 0.005 0.007 0.024 0.044 0.063 0.083 0.113 0.071 0.052 0.030 0.019 0.008 - 10.45 51.08 1973 0.004 0.012 0.017 0.030 0.085 0.123 0.141 0.115 0.093 0.037 0.012 0.002 - 10.45 51.08 1974 0.018 0.018 0.020 0.057 0.064 0.082 0.081 0.112 0.090 0.029 0.013 0.013 - 10.45 51.08 1975 0.025 0.013 0.020 0.025 0.075 0.091 0.134 0.133 0.093 0.050 0.017 0.009 - 10.45 51.08 1976 0.015 0.002 0.009 0.042 0.088 0.100 0.153 0.094 0.071 0.057 0.017 0.008 - 10.45 51.08 1977 0.004 0.015 0.030 0.022 0.071 0.083 0.083 0.061 0.048 0.033 0.021 0.005 - 10.45 51.08 1978 0.012 0.003 0.023 0.036 0.062 0.112 0.092 0.109 0.062 0.032 0.015 0.005 - 10.45 51.08 1979 0.000 0.000 0.010 0.026 0.063 0.132 0.093 0.098 0.076 0.046 0.011 0.012 - 10.45 51.08 1980 0.002 0.012 0.015 0.028 0.056 0.108 0.084 0.108 0.075 0.043 0.013 0.006 - 10.45 51.08 1981 0.005 0.004 0.020 0.046 0.052 0.079 0.108 0.078 0.060 0.028 0.013 0.003 - 10.45 51.08 1982 0.001 0.006 0.016 0.039 0.075 0.124 0.120 0.112 0.084 0.050 0.024 0.010 - 10.45 51.08 1983 0.020 0.006 0.020 0.027 0.054 0.083 0.126 0.104 0.074 0.048 0.017 0.006 - 10.45 51.08 1984 0.020 0.006 0.007 0.024 0.044 0.059 0.078 0.077 0.049 0.030 0.013 0.007 - 10.45 51.08 1985 0.001 0.002 0.010 0.043 0.080 0.091 0.100 0.096 0.067 0.051 0.013 0.011 - 10.45 51.08 1986 0.005 0.001 0.008 0.018 0.075 0.068 0.113 0.103 0.044 0.041 0.014 0.008 - 10.45 51.08 1987 0.002 0.001 0.002 0.036 0.055 0.045 0.092 0.058 0.061 0.028 0.013 0.004 - 10.45 51.08 1988 0.018 0.012 0.010 0.033 0.087 0.090 0.091 0.101 0.064 0.047 0.018 0.007 - 10.45 51.08 1989 0.016 0.011 0.025 0.038 0.070 0.088 0.101 0.091 0.069 0.046 0.018 0.005 - 10.45 51.08 1990 0.010 0.021 0.030 0.030 0.079 0.062 0.082 0.101 0.062 0.044 0.020 0.005 - 10.45 51.08 1991 0.015 0.001 0.030 0.037 0.045 0.075 0.108 0.079 0.069 0.045 0.016 0.005 - 10.45 51.08 1992 0.013 0.009 0.020 0.028 0.078 0.098 0.083 0.101 0.058 0.032 0.012 0.007 - 10.45 51.08 1993 0.009 0.001 0.013 0.041 0.091 0.060 0.057 0.069 0.041 0.027 0.005 0.004 - 10.45 51.08 1994 0.012 0.006 0.019 0.027 0.069 0.066 0.109 0.103 0.041 0.021 0.016 0.009 - 10.45 51.08 1995 0.005 0.015 0.015 0.028 0.054 0.047 0.091 0.098 0.041 0.030 0.011 0.001 - 10.45 51.08 1996 0.000 0.000 0.005 0.030 0.046 0.078 0.058 0.070 0.032 0.024 0.014 0.003 - 10.45 51.08 1997 0.001 0.012 0.024 0.024 0.073 0.086 0.073 0.092 0.069 0.034 0.010 0.005 - 10.45 51.08 1998 0.017 0.010 0.021 0.037 0.073 0.089 0.082 0.091 0.042 0.018 0.008 0.002 - 10.45 51.08 1999 0.015 0.004 0.017 0.036 0.073 0.073 0.071 0.080 0.077 0.039 0.013 0.006 - 10.45 51.08 2000 0.007 0.011 0.017 0.036 0.094 0.086 0.070 0.083 0.054 0.031 0.017 0.012 - 10.45 51.08 2001 0.008 0.013 0.012 0.022 0.063 0.067 0.074 0.097 0.049 0.040 0.013 0.004 - 10.45 51.08 2002 0.003 0.022 0.016 0.024 0.051 0.067 0.071 0.063 0.051 0.018 0.011 0.004 - 10.45 51.08 2003 0.005 0.003 0.016 0.036 0.086 0.093 0.096 0.105 0.057 0.026 0.012 0.007 - 10.45 51.08 2004 0.009 0.012 0.013 0.034 0.039 0.069 0.070 0.093 0.058 0.036 0.017 0.004 - 10.45 51.08 2005 0.014 0.001 0.009 0.038 0.057 0.084 0.092 0.067 0.066 0.037 0.023 0.005 - 10.45 51.08 2006 0.002 0.003 0.002 0.030 0.068 0.065 0.104 0.075 0.058 0.044 0.021 0.013 - 10.45 51.08 2007 0.020 0.012 0.022 0.043 0.069 0.065 0.054 0.044 0.032 0.019 0.008 0.005 - 10.45 51.08 2008 0.012 0.013 0.017 0.019 0.067 0.087 0.083 0.079 0.048 0.027 0.011 0.004 - 10.45 51.08 2009 0.001 0.005 0.015 0.049 0.052 0.055 0.078 0.090 0.059 0.025 0.012 0.006 - 10.45 51.08 2010 0.000 0.001 0.014 0.039 0.040 0.072 0.099 0.046 0.034 0.019 0.012 0.000 - 10.45 51.08 2011 0.006 0.005 0.014 0.054 0.071 0.086 0.063 0.066 0.048 0.033 0.012 0.008 - 10.45 51.08 2012 0.013 0.001 0.027 0.034 0.073 0.061 0.055 0.074 0.060 0.033 0.015 0.005 diff --git a/rLPJGUESS/inst/extdata/outputsForTests/run_patcharea/outDirectory/mrunoff.out b/rLPJGUESS/inst/extdata/outputsForTests/run_patcharea/outDirectory/mrunoff.out deleted file mode 100644 index 1e70f6b..0000000 --- a/rLPJGUESS/inst/extdata/outputsForTests/run_patcharea/outDirectory/mrunoff.out +++ /dev/null @@ -1,63 +0,0 @@ - Lon Lat Year Jan Feb Mar Apr May Jun Jul Aug Sep Oct Nov Dec - 10.45 51.08 1951 2.732 19.744 22.153 4.183 0.436 72.168 0.000 5.067 1.422 0.000 43.109 9.526 - 10.45 51.08 1952 19.580 31.098 53.226 24.856 9.250 0.663 0.000 0.000 68.755 40.016 65.127 28.722 - 10.45 51.08 1953 30.992 49.532 0.881 0.000 0.000 6.766 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1954 30.227 12.857 9.452 22.991 1.096 0.000 5.460 9.784 10.446 14.042 10.090 33.437 - 10.45 51.08 1955 30.644 29.144 38.495 16.902 0.394 0.000 10.896 19.071 3.318 5.354 10.710 36.342 - 10.45 51.08 1956 19.854 0.000 50.993 32.634 0.907 31.092 92.841 14.418 2.388 13.798 20.137 12.218 - 10.45 51.08 1957 23.841 28.202 16.676 5.395 0.000 0.000 0.000 0.000 14.807 9.055 22.004 21.506 - 10.45 51.08 1958 37.314 20.827 76.624 22.403 26.481 41.304 34.522 24.396 16.249 24.696 20.477 28.792 - 10.45 51.08 1959 18.837 4.548 7.427 16.620 18.758 24.322 5.748 31.637 0.300 17.849 31.941 11.452 - 10.45 51.08 1960 39.848 8.909 17.521 13.450 36.506 8.236 11.032 22.527 15.842 82.458 24.821 30.593 - 10.45 51.08 1961 45.883 34.113 14.981 72.068 76.131 64.383 17.681 21.656 10.906 8.899 12.384 44.592 - 10.45 51.08 1962 21.178 21.939 21.706 12.388 6.812 0.019 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1963 0.000 0.000 16.886 8.274 1.889 0.000 0.000 0.000 0.000 2.010 25.840 3.408 - 10.45 51.08 1964 6.927 23.089 10.929 19.995 31.903 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1965 0.000 0.000 8.964 4.559 5.141 3.607 0.000 0.000 0.000 0.000 0.000 44.846 - 10.45 51.08 1966 16.824 32.881 13.287 20.711 0.000 0.000 18.732 14.860 0.000 24.229 25.885 44.024 - 10.45 51.08 1967 19.146 14.902 23.105 6.027 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.862 - 10.45 51.08 1968 13.497 16.719 23.082 0.000 0.000 0.000 0.000 0.000 0.000 3.615 0.113 0.000 - 10.45 51.08 1969 0.000 0.000 3.247 50.518 36.621 8.835 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1970 0.000 26.632 5.514 13.162 8.428 1.185 0.000 1.098 0.000 0.000 0.000 0.098 - 10.45 51.08 1971 0.000 0.000 0.000 0.118 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1972 0.000 0.000 3.067 0.000 0.000 0.000 14.399 31.466 0.000 0.000 0.000 0.000 - 10.45 51.08 1973 0.000 0.000 1.604 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 2.696 - 10.45 51.08 1974 0.000 1.109 0.000 0.000 0.000 0.000 0.000 0.000 0.000 6.352 0.000 10.961 - 10.45 51.08 1975 0.000 0.000 0.000 3.396 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1976 0.174 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1977 0.000 0.000 5.196 0.000 0.000 0.000 0.000 41.389 0.175 0.000 33.451 7.366 - 10.45 51.08 1978 0.000 0.000 7.825 2.328 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1979 0.000 0.000 44.941 5.923 0.000 0.000 0.000 0.000 0.000 0.000 0.000 1.861 - 10.45 51.08 1980 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1981 0.000 1.888 2.729 0.000 4.952 0.000 0.000 14.407 0.000 8.956 9.206 15.113 - 10.45 51.08 1982 12.845 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1983 0.000 0.000 0.000 46.801 5.991 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1984 0.000 0.000 0.000 4.774 21.539 7.967 0.000 0.000 0.000 1.205 24.313 0.000 - 10.45 51.08 1985 3.391 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1986 0.050 0.000 8.388 10.277 0.000 0.000 0.000 0.000 0.000 0.000 0.000 7.745 - 10.45 51.08 1987 15.783 4.832 39.690 0.000 0.000 23.480 0.000 0.000 23.960 0.000 3.929 12.729 - 10.45 51.08 1988 17.917 21.201 55.517 15.342 0.000 0.000 0.000 0.000 0.000 0.000 0.000 3.873 - 10.45 51.08 1989 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 6.290 - 10.45 51.08 1990 0.000 0.000 3.156 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1991 0.000 0.000 0.000 0.000 0.000 0.000 0.000 1.247 0.000 0.000 0.000 0.000 - 10.45 51.08 1992 0.000 0.000 22.687 0.000 0.000 0.000 11.571 0.000 0.000 0.000 5.921 10.306 - 10.45 51.08 1993 1.947 1.222 0.000 0.000 0.000 1.096 20.140 0.000 0.000 0.000 0.000 25.488 - 10.45 51.08 1994 0.319 0.000 24.290 67.676 0.000 0.000 0.000 0.000 0.000 0.000 2.973 1.397 - 10.45 51.08 1995 1.262 15.977 10.237 8.938 0.000 14.216 8.785 0.000 11.092 0.000 0.000 0.000 - 10.45 51.08 1996 0.000 0.000 0.056 4.560 4.898 0.000 8.429 9.758 0.000 3.958 14.128 38.693 - 10.45 51.08 1997 8.941 32.283 26.447 3.555 0.667 0.000 25.460 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1998 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 24.275 16.050 0.000 - 10.45 51.08 1999 0.000 0.000 7.952 3.555 0.000 0.000 2.387 0.000 0.000 0.000 0.000 3.220 - 10.45 51.08 2000 6.063 5.627 6.937 1.984 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 2001 0.000 0.000 19.212 0.000 0.000 0.000 0.000 0.000 0.000 0.000 3.943 0.732 - 10.45 51.08 2002 0.000 0.000 5.643 0.000 0.000 20.399 12.384 0.000 0.000 0.408 53.947 86.180 - 10.45 51.08 2003 25.620 9.012 10.280 0.542 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 2004 0.000 0.000 0.000 0.000 59.233 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 2005 0.000 2.058 0.361 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 2006 0.000 0.000 3.810 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 2007 0.000 0.000 0.000 0.000 0.000 0.864 15.835 68.709 57.808 0.000 0.253 0.691 - 10.45 51.08 2008 0.000 0.000 0.000 12.342 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.950 - 10.45 51.08 2009 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 12.906 31.301 - 10.45 51.08 2010 2.394 22.585 0.000 0.000 11.738 4.995 10.624 35.836 15.882 2.440 43.392 9.428 - 10.45 51.08 2011 97.667 7.887 3.531 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 2012 9.114 0.000 0.000 0.000 0.000 0.000 0.016 0.000 0.000 0.000 0.000 0.078 diff --git a/rLPJGUESS/inst/extdata/outputsForTests/run_patcharea/outDirectory/mwcont_lower.out b/rLPJGUESS/inst/extdata/outputsForTests/run_patcharea/outDirectory/mwcont_lower.out deleted file mode 100644 index 867dde5..0000000 --- a/rLPJGUESS/inst/extdata/outputsForTests/run_patcharea/outDirectory/mwcont_lower.out +++ /dev/null @@ -1,63 +0,0 @@ - Lon Lat Year Jan Feb Mar Apr May Jun Jul Aug Sep Oct Nov Dec - 10.45 51.08 1951 0.953 1.000 1.000 0.996 0.982 0.983 0.971 0.983 0.980 0.977 0.999 1.000 - 10.45 51.08 1952 1.000 1.000 0.997 0.979 0.988 0.965 0.869 0.755 0.834 0.989 0.999 0.999 - 10.45 51.08 1953 1.000 0.999 0.997 0.980 0.919 0.892 0.923 0.920 0.867 0.851 0.888 0.922 - 10.45 51.08 1954 0.995 0.999 1.000 0.998 0.970 0.897 0.931 0.992 0.992 0.995 1.000 1.000 - 10.45 51.08 1955 1.000 0.997 0.997 0.997 0.990 0.971 0.981 0.981 0.981 0.992 0.999 1.000 - 10.45 51.08 1956 1.000 1.000 0.999 0.997 0.985 0.982 0.990 0.992 0.993 0.997 1.000 1.000 - 10.45 51.08 1957 1.000 1.000 0.999 0.992 0.974 0.933 0.910 0.953 0.996 0.995 0.999 1.000 - 10.45 51.08 1958 1.000 1.000 0.996 0.998 1.000 0.995 0.996 1.000 1.000 1.000 1.000 1.000 - 10.45 51.08 1959 1.000 1.000 1.000 1.000 1.000 0.999 1.000 0.999 0.999 1.000 1.000 1.000 - 10.45 51.08 1960 1.000 1.000 1.000 1.000 0.999 1.000 1.000 1.000 0.997 0.999 1.000 1.000 - 10.45 51.08 1961 1.000 1.000 1.000 0.998 0.998 0.998 1.000 1.000 1.000 1.000 1.000 1.000 - 10.45 51.08 1962 1.000 1.000 0.997 0.997 0.997 0.958 0.890 0.822 0.767 0.752 0.747 0.775 - 10.45 51.08 1963 0.803 0.808 0.925 0.997 0.983 0.921 0.913 0.883 0.915 0.985 1.000 1.000 - 10.45 51.08 1964 1.000 1.000 1.000 0.997 0.983 0.906 0.755 0.631 0.533 0.482 0.498 0.540 - 10.45 51.08 1965 0.624 0.714 0.813 0.957 0.984 0.957 0.924 0.876 0.828 0.806 0.823 0.988 - 10.45 51.08 1966 1.000 0.997 0.998 0.997 0.925 0.777 0.795 0.804 0.850 0.839 0.990 1.000 - 10.45 51.08 1967 1.000 1.000 0.998 0.993 0.915 0.827 0.723 0.538 0.522 0.567 0.629 0.757 - 10.45 51.08 1968 0.880 0.986 0.998 0.962 0.944 0.826 0.585 0.373 0.282 0.363 0.436 0.511 - 10.45 51.08 1969 0.610 0.745 0.841 0.989 0.960 0.908 0.732 0.389 0.320 0.283 0.321 0.363 - 10.45 51.08 1970 0.382 0.577 0.787 0.959 0.988 0.865 0.560 0.390 0.339 0.337 0.521 0.652 - 10.45 51.08 1971 0.710 0.850 0.951 0.978 0.875 0.718 0.449 0.048 0.000 0.003 0.027 0.126 - 10.45 51.08 1972 0.164 0.202 0.250 0.335 0.310 0.225 0.122 0.109 0.106 0.077 0.133 0.220 - 10.45 51.08 1973 0.250 0.375 0.521 0.593 0.589 0.367 0.052 0.000 0.003 0.040 0.141 0.285 - 10.45 51.08 1974 0.413 0.513 0.636 0.604 0.531 0.411 0.363 0.196 0.059 0.046 0.241 0.475 - 10.45 51.08 1975 0.649 0.730 0.812 0.959 0.905 0.723 0.540 0.192 0.010 0.004 0.016 0.064 - 10.45 51.08 1976 0.224 0.384 0.447 0.469 0.340 0.131 0.000 0.000 0.000 0.005 0.029 0.098 - 10.45 51.08 1977 0.175 0.314 0.433 0.541 0.492 0.301 0.185 0.223 0.300 0.326 0.505 0.680 - 10.45 51.08 1978 0.819 0.876 0.977 0.982 0.925 0.741 0.525 0.307 0.186 0.202 0.211 0.285 - 10.45 51.08 1979 0.386 0.414 0.661 0.945 0.944 0.727 0.519 0.351 0.146 0.060 0.086 0.208 - 10.45 51.08 1980 0.344 0.532 0.601 0.722 0.700 0.461 0.311 0.076 0.000 0.003 0.029 0.110 - 10.45 51.08 1981 0.257 0.359 0.500 0.526 0.499 0.428 0.290 0.149 0.090 0.150 0.298 0.512 - 10.45 51.08 1982 0.671 0.764 0.827 0.866 0.779 0.481 0.179 0.002 0.000 0.025 0.041 0.101 - 10.45 51.08 1983 0.186 0.282 0.341 0.538 0.597 0.558 0.265 0.005 0.001 0.000 0.000 0.009 - 10.45 51.08 1984 0.068 0.227 0.317 0.457 0.522 0.637 0.510 0.414 0.365 0.507 0.589 0.681 - 10.45 51.08 1985 0.728 0.837 0.902 0.971 0.890 0.659 0.441 0.176 0.017 0.000 0.000 0.038 - 10.45 51.08 1986 0.175 0.254 0.369 0.586 0.613 0.606 0.361 0.091 0.009 0.013 0.064 0.113 - 10.45 51.08 1987 0.314 0.439 0.578 0.750 0.665 0.721 0.678 0.677 0.650 0.679 0.801 0.964 - 10.45 51.08 1988 1.000 1.000 0.999 0.983 0.832 0.506 0.298 0.076 0.000 0.000 0.004 0.136 - 10.45 51.08 1989 0.328 0.388 0.536 0.577 0.484 0.210 0.009 0.000 0.000 0.003 0.062 0.192 - 10.45 51.08 1990 0.312 0.403 0.526 0.528 0.423 0.182 0.055 0.000 0.002 0.001 0.028 0.134 - 10.45 51.08 1991 0.297 0.342 0.401 0.389 0.309 0.098 0.000 0.006 0.000 0.000 0.004 0.028 - 10.45 51.08 1992 0.111 0.166 0.271 0.423 0.330 0.058 0.012 0.000 0.004 0.005 0.075 0.262 - 10.45 51.08 1993 0.412 0.519 0.639 0.656 0.445 0.319 0.228 0.206 0.154 0.187 0.301 0.493 - 10.45 51.08 1994 0.741 0.896 0.997 0.986 0.870 0.799 0.576 0.338 0.321 0.337 0.415 0.574 - 10.45 51.08 1995 0.712 0.950 0.999 0.992 0.906 0.935 0.801 0.577 0.510 0.576 0.646 0.715 - 10.45 51.08 1996 0.778 0.830 0.937 0.988 0.964 0.867 0.759 0.642 0.685 0.756 0.933 1.000 - 10.45 51.08 1997 0.999 1.000 0.997 0.990 0.923 0.670 0.439 0.344 0.179 0.107 0.155 0.284 - 10.45 51.08 1998 0.421 0.484 0.618 0.656 0.549 0.332 0.149 0.009 0.028 0.206 0.548 0.663 - 10.45 51.08 1999 0.737 0.873 0.990 0.989 0.867 0.675 0.560 0.381 0.215 0.122 0.138 0.286 - 10.45 51.08 2000 0.415 0.615 0.899 0.974 0.786 0.463 0.205 0.035 0.008 0.028 0.078 0.145 - 10.45 51.08 2001 0.221 0.295 0.442 0.662 0.632 0.448 0.297 0.082 0.015 0.025 0.094 0.342 - 10.45 51.08 2002 0.421 0.539 0.756 0.833 0.895 0.841 0.718 0.668 0.589 0.677 0.948 1.000 - 10.45 51.08 2003 1.000 1.000 0.998 0.971 0.828 0.630 0.348 0.031 0.002 0.007 0.022 0.108 - 10.45 51.08 2004 0.236 0.349 0.403 0.394 0.425 0.295 0.145 0.008 0.001 0.001 0.022 0.090 - 10.45 51.08 2005 0.168 0.293 0.410 0.481 0.400 0.176 0.001 0.004 0.001 0.002 0.010 0.058 - 10.45 51.08 2006 0.135 0.186 0.252 0.385 0.307 0.169 0.003 0.004 0.005 0.002 0.035 0.085 - 10.45 51.08 2007 0.198 0.330 0.488 0.522 0.278 0.088 0.034 0.043 0.031 0.066 0.213 0.463 - 10.45 51.08 2008 0.562 0.681 0.819 0.970 0.884 0.619 0.350 0.055 0.001 0.011 0.074 0.211 - 10.45 51.08 2009 0.296 0.366 0.576 0.636 0.600 0.543 0.438 0.268 0.092 0.116 0.305 0.544 - 10.45 51.08 2010 0.690 0.768 0.933 0.963 0.928 0.893 0.583 0.616 0.761 0.797 0.909 1.000 - 10.45 51.08 2011 1.000 1.000 0.995 0.926 0.694 0.362 0.217 0.113 0.049 0.023 0.027 0.107 - 10.45 51.08 2012 0.304 0.407 0.454 0.419 0.287 0.105 0.155 0.059 0.001 0.000 0.009 0.104 diff --git a/rLPJGUESS/inst/extdata/outputsForTests/run_patcharea/outDirectory/mwcont_upper.out b/rLPJGUESS/inst/extdata/outputsForTests/run_patcharea/outDirectory/mwcont_upper.out deleted file mode 100644 index aeced4d..0000000 --- a/rLPJGUESS/inst/extdata/outputsForTests/run_patcharea/outDirectory/mwcont_upper.out +++ /dev/null @@ -1,63 +0,0 @@ - Lon Lat Year Jan Feb Mar Apr May Jun Jul Aug Sep Oct Nov Dec - 10.45 51.08 1951 0.826 0.850 0.817 0.546 0.389 0.761 0.550 0.673 0.548 0.520 0.849 0.902 - 10.45 51.08 1952 0.909 0.926 0.909 0.746 0.700 0.484 0.248 0.186 0.774 0.923 0.922 0.938 - 10.45 51.08 1953 0.918 0.944 0.716 0.430 0.355 0.541 0.617 0.470 0.320 0.405 0.640 0.625 - 10.45 51.08 1954 0.806 0.873 0.741 0.668 0.442 0.379 0.667 0.678 0.596 0.741 0.732 0.809 - 10.45 51.08 1955 0.940 0.928 0.918 0.728 0.478 0.480 0.667 0.799 0.625 0.586 0.807 0.863 - 10.45 51.08 1956 0.906 0.862 0.826 0.722 0.573 0.746 0.805 0.654 0.537 0.618 0.794 0.800 - 10.45 51.08 1957 0.893 0.833 0.729 0.553 0.470 0.489 0.625 0.632 0.580 0.847 0.883 0.892 - 10.45 51.08 1958 0.924 0.838 0.910 0.751 0.670 0.689 0.656 0.630 0.569 0.771 0.903 0.878 - 10.45 51.08 1959 0.910 0.807 0.649 0.681 0.716 0.762 0.509 0.711 0.591 0.530 0.930 0.870 - 10.45 51.08 1960 0.907 0.884 0.761 0.562 0.666 0.522 0.464 0.625 0.743 0.881 0.843 0.878 - 10.45 51.08 1961 0.939 0.875 0.673 0.868 0.893 0.828 0.613 0.708 0.639 0.559 0.715 0.887 - 10.45 51.08 1962 0.904 0.898 0.909 0.641 0.454 0.109 0.216 0.044 0.205 0.086 0.119 0.440 - 10.45 51.08 1963 0.571 0.579 0.818 0.687 0.377 0.263 0.366 0.511 0.388 0.629 0.778 0.921 - 10.45 51.08 1964 0.900 0.883 0.757 0.680 0.660 0.303 0.109 0.164 0.050 0.191 0.431 0.579 - 10.45 51.08 1965 0.762 0.835 0.870 0.619 0.592 0.594 0.495 0.446 0.421 0.338 0.554 0.893 - 10.45 51.08 1966 0.905 0.930 0.744 0.678 0.438 0.403 0.835 0.656 0.682 0.565 0.917 0.918 - 10.45 51.08 1967 0.920 0.811 0.727 0.596 0.331 0.617 0.449 0.333 0.649 0.709 0.754 0.818 - 10.45 51.08 1968 0.925 0.885 0.842 0.513 0.593 0.358 0.133 0.119 0.398 0.848 0.900 0.850 - 10.45 51.08 1969 0.843 0.840 0.911 0.823 0.757 0.753 0.342 0.228 0.698 0.541 0.640 0.725 - 10.45 51.08 1970 0.755 0.938 0.899 0.812 0.671 0.285 0.154 0.586 0.560 0.643 0.915 0.916 - 10.45 51.08 1971 0.889 0.807 0.707 0.530 0.360 0.368 0.084 0.049 0.031 0.200 0.551 0.877 - 10.45 51.08 1972 0.812 0.810 0.780 0.603 0.584 0.629 0.553 0.869 0.622 0.476 0.722 0.853 - 10.45 51.08 1973 0.815 0.878 0.816 0.610 0.448 0.089 0.054 0.018 0.235 0.562 0.905 0.914 - 10.45 51.08 1974 0.880 0.832 0.807 0.420 0.441 0.457 0.650 0.353 0.270 0.516 0.888 0.923 - 10.45 51.08 1975 0.893 0.827 0.767 0.731 0.565 0.383 0.321 0.116 0.206 0.171 0.357 0.509 - 10.45 51.08 1976 0.839 0.857 0.681 0.483 0.186 0.362 0.021 0.032 0.025 0.316 0.463 0.630 - 10.45 51.08 1977 0.656 0.729 0.789 0.693 0.409 0.354 0.674 0.839 0.818 0.807 0.917 0.917 - 10.45 51.08 1978 0.866 0.812 0.725 0.518 0.498 0.152 0.179 0.198 0.338 0.733 0.686 0.766 - 10.45 51.08 1979 0.843 0.870 0.910 0.798 0.536 0.223 0.354 0.214 0.158 0.178 0.606 0.866 - 10.45 51.08 1980 0.878 0.823 0.665 0.627 0.435 0.185 0.341 0.036 0.047 0.228 0.472 0.754 - 10.45 51.08 1981 0.870 0.893 0.835 0.570 0.798 0.714 0.297 0.596 0.506 0.902 0.904 0.943 - 10.45 51.08 1982 0.919 0.866 0.669 0.451 0.368 0.078 0.087 0.022 0.000 0.403 0.493 0.560 - 10.45 51.08 1983 0.607 0.659 0.647 0.851 0.711 0.539 0.077 0.201 0.143 0.050 0.031 0.274 - 10.45 51.08 1984 0.500 0.808 0.733 0.781 0.725 0.746 0.528 0.630 0.736 0.883 0.904 0.911 - 10.45 51.08 1985 0.917 0.878 0.751 0.569 0.254 0.201 0.154 0.124 0.075 0.000 0.078 0.499 - 10.45 51.08 1986 0.841 0.860 0.844 0.868 0.633 0.701 0.133 0.171 0.415 0.516 0.883 0.817 - 10.45 51.08 1987 0.941 0.924 0.946 0.652 0.518 0.886 0.576 0.743 0.686 0.819 0.844 0.924 - 10.45 51.08 1988 0.892 0.856 0.884 0.689 0.195 0.108 0.466 0.140 0.022 0.043 0.161 0.753 - 10.45 51.08 1989 0.877 0.754 0.742 0.536 0.373 0.193 0.058 0.035 0.087 0.241 0.732 0.873 - 10.45 51.08 1990 0.884 0.795 0.771 0.586 0.261 0.498 0.391 0.050 0.195 0.093 0.385 0.725 - 10.45 51.08 1991 0.770 0.726 0.644 0.401 0.333 0.143 0.036 0.517 0.016 0.018 0.156 0.374 - 10.45 51.08 1992 0.706 0.700 0.735 0.669 0.307 0.262 0.570 0.090 0.283 0.221 0.637 0.931 - 10.45 51.08 1993 0.924 0.923 0.794 0.512 0.218 0.771 0.731 0.577 0.590 0.689 0.860 0.910 - 10.45 51.08 1994 0.916 0.868 0.843 0.747 0.568 0.609 0.522 0.368 0.698 0.706 0.792 0.915 - 10.45 51.08 1995 0.903 0.887 0.712 0.608 0.536 0.828 0.585 0.465 0.698 0.827 0.780 0.794 - 10.45 51.08 1996 0.857 0.850 0.735 0.571 0.723 0.583 0.676 0.664 0.812 0.794 0.923 0.917 - 10.45 51.08 1997 0.917 0.891 0.824 0.647 0.424 0.078 0.408 0.518 0.311 0.386 0.630 0.817 - 10.45 51.08 1998 0.851 0.752 0.736 0.549 0.470 0.308 0.317 0.109 0.537 0.917 0.930 0.882 - 10.45 51.08 1999 0.834 0.802 0.759 0.609 0.306 0.493 0.700 0.431 0.195 0.183 0.666 0.863 - 10.45 51.08 2000 0.900 0.906 0.867 0.636 0.252 0.043 0.246 0.202 0.412 0.581 0.602 0.625 - 10.45 51.08 2001 0.635 0.710 0.786 0.778 0.539 0.375 0.604 0.154 0.330 0.496 0.740 0.925 - 10.45 51.08 2002 0.890 0.839 0.869 0.687 0.764 0.705 0.617 0.760 0.607 0.816 0.920 0.923 - 10.45 51.08 2003 0.926 0.895 0.771 0.437 0.302 0.479 0.118 0.015 0.216 0.311 0.469 0.751 - 10.45 51.08 2004 0.817 0.846 0.688 0.510 0.815 0.423 0.464 0.068 0.065 0.129 0.391 0.744 - 10.45 51.08 2005 0.788 0.879 0.851 0.589 0.450 0.125 0.130 0.359 0.154 0.230 0.321 0.540 - 10.45 51.08 2006 0.618 0.628 0.749 0.666 0.451 0.540 0.358 0.253 0.307 0.278 0.467 0.543 - 10.45 51.08 2007 0.700 0.749 0.704 0.457 0.243 0.636 0.707 0.832 0.706 0.847 0.881 0.914 - 10.45 51.08 2008 0.857 0.759 0.744 0.781 0.404 0.113 0.227 0.026 0.079 0.408 0.738 0.907 - 10.45 51.08 2009 0.852 0.799 0.802 0.571 0.707 0.604 0.539 0.325 0.280 0.628 0.910 0.938 - 10.45 51.08 2010 0.949 0.949 0.801 0.504 0.688 0.493 0.377 0.874 0.761 0.900 0.927 0.941 - 10.45 51.08 2011 0.939 0.837 0.682 0.422 0.070 0.137 0.555 0.488 0.607 0.540 0.546 0.670 - 10.45 51.08 2012 0.883 0.853 0.630 0.389 0.271 0.482 0.760 0.484 0.145 0.081 0.284 0.775 diff --git a/rLPJGUESS/inst/extdata/outputsForTests/run_patcharea/outDirectory/nflux.out b/rLPJGUESS/inst/extdata/outputsForTests/run_patcharea/outDirectory/nflux.out deleted file mode 100644 index 482b75e..0000000 --- a/rLPJGUESS/inst/extdata/outputsForTests/run_patcharea/outDirectory/nflux.out +++ /dev/null @@ -1,63 +0,0 @@ - Lon Lat Year dep fix fert flux leach NEE - 10.45 51.08 1951 -11.23 -1.93 -0.00 1.22 0.46 -11.48 - 10.45 51.08 1952 -11.23 -1.72 -0.00 2.83 0.96 -9.16 - 10.45 51.08 1953 -11.23 -1.94 -0.00 1.34 0.27 -11.57 - 10.45 51.08 1954 -11.23 -2.11 -0.00 1.21 0.68 -11.45 - 10.45 51.08 1955 -11.23 -2.04 -0.00 1.13 0.68 -11.46 - 10.45 51.08 1956 -11.23 -2.14 -0.00 1.10 0.69 -11.58 - 10.45 51.08 1957 -11.23 -2.17 -0.00 1.25 0.67 -11.48 - 10.45 51.08 1958 -11.23 -0.00 -0.00 1.05 1.42 -8.76 - 10.45 51.08 1959 -11.23 -2.68 -0.00 1.38 0.56 -11.97 - 10.45 51.08 1960 -14.10 -0.00 -0.00 0.96 1.23 -11.91 - 10.45 51.08 1961 -14.10 -2.09 -0.00 1.45 1.11 -13.62 - 10.45 51.08 1962 -14.10 -2.03 -0.00 9.01 0.35 -6.77 - 10.45 51.08 1963 -14.10 -1.82 -0.00 5.39 0.26 -10.26 - 10.45 51.08 1964 -14.10 -1.72 -0.00 7.61 0.29 -7.92 - 10.45 51.08 1965 -14.10 -2.66 -0.00 1.56 0.21 -14.99 - 10.45 51.08 1966 -14.10 -2.89 -0.00 1.85 0.57 -14.56 - 10.45 51.08 1967 -14.10 -3.24 -0.00 2.84 0.31 -14.19 - 10.45 51.08 1968 -14.10 -3.01 -0.00 6.45 0.18 -10.48 - 10.45 51.08 1969 -14.10 -2.75 -0.00 5.11 0.19 -11.55 - 10.45 51.08 1970 -16.97 -2.60 -0.00 5.76 0.08 -13.72 - 10.45 51.08 1971 -16.97 -2.71 -0.00 7.52 0.00 -12.16 - 10.45 51.08 1972 -16.97 -2.95 -0.00 1.80 0.00 -18.12 - 10.45 51.08 1973 -16.97 -2.68 -0.00 7.42 0.01 -12.22 - 10.45 51.08 1974 -16.97 -2.89 -0.00 3.51 0.01 -16.35 - 10.45 51.08 1975 -16.97 -2.50 -0.00 6.87 0.02 -12.59 - 10.45 51.08 1976 -16.97 -2.64 -0.00 7.10 0.00 -12.50 - 10.45 51.08 1977 -16.97 -2.58 -0.00 3.41 0.01 -16.13 - 10.45 51.08 1978 -16.97 -3.10 -0.00 6.08 0.05 -13.93 - 10.45 51.08 1979 -16.97 -2.78 -0.00 6.14 0.02 -13.60 - 10.45 51.08 1980 -17.99 -2.82 -0.00 6.29 0.00 -14.52 - 10.45 51.08 1981 -17.99 -2.70 -0.00 2.39 0.02 -18.29 - 10.45 51.08 1982 -17.99 -2.40 -0.00 6.81 0.01 -13.58 - 10.45 51.08 1983 -17.99 -2.01 -0.00 6.25 0.01 -13.75 - 10.45 51.08 1984 -17.99 -2.62 -0.00 1.62 0.02 -18.98 - 10.45 51.08 1985 -17.99 -2.65 -0.00 7.87 0.00 -12.77 - 10.45 51.08 1986 -17.99 -2.19 -0.00 4.88 0.02 -15.28 - 10.45 51.08 1987 -17.99 -2.92 -0.00 1.57 0.06 -19.29 - 10.45 51.08 1988 -17.99 -2.52 -0.00 6.73 0.47 -13.32 - 10.45 51.08 1989 -17.99 -2.45 -0.00 5.60 0.00 -14.83 - 10.45 51.08 1990 -19.66 -2.54 -0.00 5.25 0.00 -16.95 - 10.45 51.08 1991 -19.66 -2.74 -0.00 6.04 0.00 -16.36 - 10.45 51.08 1992 -19.66 -1.82 -0.00 4.98 0.01 -16.48 - 10.45 51.08 1993 -19.66 -2.30 -0.00 3.01 0.01 -18.93 - 10.45 51.08 1994 -19.66 -2.39 -0.00 2.09 0.19 -19.75 - 10.45 51.08 1995 -19.66 -2.78 -0.00 1.66 0.16 -20.62 - 10.45 51.08 1996 -19.66 -3.21 -0.00 1.48 0.17 -21.21 - 10.45 51.08 1997 -19.66 -3.07 -0.00 4.89 0.35 -17.49 - 10.45 51.08 1998 -19.66 -3.16 -0.00 4.08 0.01 -18.72 - 10.45 51.08 1999 -19.66 -2.67 -0.00 3.71 0.06 -18.56 - 10.45 51.08 2000 -21.34 -2.72 -0.00 4.80 0.05 -19.21 - 10.45 51.08 2001 -21.34 -2.82 -0.00 3.62 0.02 -20.52 - 10.45 51.08 2002 -21.34 -3.21 -0.00 1.54 0.25 -22.76 - 10.45 51.08 2003 -21.34 -2.32 -0.00 4.81 0.20 -18.65 - 10.45 51.08 2004 -21.34 -2.86 -0.00 4.40 0.00 -19.81 - 10.45 51.08 2005 -21.34 -2.60 -0.00 4.46 0.01 -19.48 - 10.45 51.08 2006 -21.34 -2.47 -0.00 3.69 0.00 -20.12 - 10.45 51.08 2007 -21.34 -2.53 -0.00 2.27 0.00 -21.59 - 10.45 51.08 2008 -21.34 -2.85 -0.00 4.38 0.02 -19.79 - 10.45 51.08 2009 -21.34 -2.40 -0.00 2.75 0.01 -20.97 - 10.45 51.08 2010 -20.03 -2.93 -0.00 2.47 0.08 -20.41 - 10.45 51.08 2011 -20.03 -2.74 -0.00 4.00 0.23 -18.54 - 10.45 51.08 2012 -20.03 -2.81 -0.00 4.11 0.00 -18.73 diff --git a/rLPJGUESS/inst/extdata/outputsForTests/run_patcharea/outDirectory/ngases.out b/rLPJGUESS/inst/extdata/outputsForTests/run_patcharea/outDirectory/ngases.out deleted file mode 100644 index 3603b78..0000000 --- a/rLPJGUESS/inst/extdata/outputsForTests/run_patcharea/outDirectory/ngases.out +++ /dev/null @@ -1,63 +0,0 @@ - Lon Lat Year NH3 NO NO2 N2O N2 NSoil Total - 10.45 51.08 1951 0.086 0.110 0.028 0.013 0.127 0.859 1.222 - 10.45 51.08 1952 0.433 0.555 0.139 0.064 0.642 0.997 2.830 - 10.45 51.08 1953 0.083 0.106 0.027 0.012 0.122 0.989 1.339 - 10.45 51.08 1954 0.082 0.105 0.026 0.012 0.121 0.867 1.214 - 10.45 51.08 1955 0.081 0.104 0.026 0.012 0.120 0.790 1.134 - 10.45 51.08 1956 0.081 0.103 0.026 0.012 0.120 0.760 1.101 - 10.45 51.08 1957 0.079 0.101 0.025 0.012 0.117 0.921 1.254 - 10.45 51.08 1958 0.231 0.297 0.074 0.034 0.343 0.073 1.052 - 10.45 51.08 1959 0.222 0.284 0.071 0.033 0.329 0.438 1.377 - 10.45 51.08 1960 0.210 0.270 0.068 0.031 0.312 0.069 0.961 - 10.45 51.08 1961 0.204 0.262 0.066 0.030 0.303 0.590 1.455 - 10.45 51.08 1962 1.874 2.406 0.604 0.278 2.779 1.070 9.011 - 10.45 51.08 1963 1.112 1.428 0.358 0.165 1.649 0.681 5.394 - 10.45 51.08 1964 1.559 2.001 0.502 0.231 2.312 1.009 7.614 - 10.45 51.08 1965 0.179 0.229 0.058 0.026 0.265 0.806 1.564 - 10.45 51.08 1966 0.176 0.226 0.057 0.026 0.262 1.107 1.855 - 10.45 51.08 1967 0.399 0.512 0.128 0.059 0.591 1.148 2.838 - 10.45 51.08 1968 1.235 1.585 0.398 0.183 1.831 1.216 6.447 - 10.45 51.08 1969 0.930 1.194 0.300 0.138 1.379 1.165 5.106 - 10.45 51.08 1970 1.054 1.353 0.339 0.156 1.563 1.298 5.763 - 10.45 51.08 1971 1.406 1.806 0.453 0.209 2.086 1.564 7.523 - 10.45 51.08 1972 0.162 0.209 0.052 0.024 0.241 1.113 1.801 - 10.45 51.08 1973 1.349 1.732 0.434 0.200 2.000 1.707 7.422 - 10.45 51.08 1974 0.505 0.648 0.163 0.075 0.749 1.367 3.505 - 10.45 51.08 1975 1.223 1.570 0.394 0.181 1.814 1.684 6.866 - 10.45 51.08 1976 1.310 1.682 0.422 0.194 1.943 1.552 7.102 - 10.45 51.08 1977 0.555 0.713 0.179 0.082 0.823 1.058 3.410 - 10.45 51.08 1978 1.082 1.390 0.349 0.161 1.605 1.493 6.080 - 10.45 51.08 1979 1.082 1.389 0.348 0.160 1.605 1.552 6.137 - 10.45 51.08 1980 1.140 1.464 0.367 0.169 1.691 1.460 6.292 - 10.45 51.08 1981 0.271 0.348 0.087 0.040 0.402 1.239 2.388 - 10.45 51.08 1982 1.202 1.544 0.387 0.178 1.783 1.714 6.809 - 10.45 51.08 1983 1.154 1.482 0.372 0.171 1.712 1.356 6.246 - 10.45 51.08 1984 0.124 0.159 0.040 0.018 0.184 1.098 1.623 - 10.45 51.08 1985 1.485 1.906 0.478 0.220 2.202 1.581 7.872 - 10.45 51.08 1986 0.824 1.058 0.265 0.122 1.222 1.389 4.881 - 10.45 51.08 1987 0.119 0.153 0.038 0.018 0.177 1.065 1.570 - 10.45 51.08 1988 1.201 1.543 0.387 0.178 1.782 1.640 6.731 - 10.45 51.08 1989 0.968 1.243 0.312 0.144 1.436 1.501 5.604 - 10.45 51.08 1990 0.912 1.170 0.294 0.135 1.352 1.383 5.246 - 10.45 51.08 1991 1.081 1.388 0.348 0.160 1.604 1.459 6.041 - 10.45 51.08 1992 0.841 1.080 0.271 0.125 1.247 1.414 4.978 - 10.45 51.08 1993 0.443 0.569 0.143 0.066 0.657 1.136 3.012 - 10.45 51.08 1994 0.159 0.204 0.051 0.024 0.236 1.422 2.095 - 10.45 51.08 1995 0.102 0.131 0.033 0.015 0.151 1.224 1.656 - 10.45 51.08 1996 0.103 0.133 0.033 0.015 0.153 1.045 1.483 - 10.45 51.08 1997 0.808 1.038 0.260 0.120 1.199 1.461 4.886 - 10.45 51.08 1998 0.617 0.792 0.199 0.091 0.915 1.465 4.079 - 10.45 51.08 1999 0.549 0.705 0.177 0.081 0.814 1.387 3.713 - 10.45 51.08 2000 0.770 0.988 0.248 0.114 1.141 1.537 4.798 - 10.45 51.08 2001 0.531 0.682 0.171 0.079 0.787 1.372 3.621 - 10.45 51.08 2002 0.091 0.117 0.029 0.014 0.136 1.154 1.541 - 10.45 51.08 2003 0.741 0.952 0.239 0.110 1.099 1.670 4.810 - 10.45 51.08 2004 0.729 0.936 0.235 0.108 1.081 1.307 4.395 - 10.45 51.08 2005 0.703 0.903 0.226 0.104 1.043 1.475 4.455 - 10.45 51.08 2006 0.529 0.679 0.170 0.078 0.784 1.447 3.688 - 10.45 51.08 2007 0.257 0.330 0.083 0.038 0.382 1.184 2.274 - 10.45 51.08 2008 0.673 0.864 0.217 0.100 0.998 1.530 4.381 - 10.45 51.08 2009 0.361 0.464 0.116 0.054 0.535 1.222 2.752 - 10.45 51.08 2010 0.325 0.418 0.105 0.048 0.482 1.089 2.467 - 10.45 51.08 2011 0.621 0.797 0.200 0.092 0.921 1.370 4.002 - 10.45 51.08 2012 0.662 0.849 0.213 0.098 0.981 1.306 4.109 diff --git a/rLPJGUESS/inst/extdata/outputsForTests/run_patcharea/outDirectory/nlitter.out b/rLPJGUESS/inst/extdata/outputsForTests/run_patcharea/outDirectory/nlitter.out deleted file mode 100644 index 7c40f37..0000000 --- a/rLPJGUESS/inst/extdata/outputsForTests/run_patcharea/outDirectory/nlitter.out +++ /dev/null @@ -1,63 +0,0 @@ - Lon Lat Year Abi_alb BES Bet_pen Bet_pub Car_bet Cor_ave Fag_syl Fra_exc Jun_oxy MRS Pic_abi Pic_sit Pin_syl Pin_hal Pop_tre Que_coc Que_ile Que_pub Que_rob Til_cor Ulm_gla C3_gr C4_gr Total - 10.45 51.08 1951 0.00 0.00 0.00 0.00 0.00 0.00 80.16 0.21 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 80.37 - 10.45 51.08 1952 0.00 0.00 0.00 0.00 0.00 0.00 79.69 8.45 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 88.14 - 10.45 51.08 1953 0.00 0.00 0.00 0.00 0.00 0.00 79.94 0.10 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 80.04 - 10.45 51.08 1954 0.00 0.00 0.00 0.00 0.00 0.00 80.30 0.09 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 80.39 - 10.45 51.08 1955 0.00 0.00 0.00 0.00 0.00 0.00 79.41 0.08 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 79.49 - 10.45 51.08 1956 0.00 0.00 0.00 0.00 0.00 0.00 78.33 0.08 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 78.41 - 10.45 51.08 1957 0.00 0.00 0.00 0.00 0.00 0.00 876.28 8.33 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 884.61 - 10.45 51.08 1958 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 - 10.45 51.08 1959 0.00 0.86 0.80 1.49 1.01 0.48 0.42 1.35 0.00 0.00 0.14 0.43 0.68 0.00 0.96 0.00 0.00 0.00 0.96 0.64 1.24 64.32 0.00 75.79 - 10.45 51.08 1960 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 - 10.45 51.08 1961 0.00 0.17 0.58 0.49 0.49 0.47 0.18 0.52 0.00 0.00 0.09 0.25 0.33 0.00 0.52 0.00 0.00 0.00 0.75 0.33 0.65 42.70 0.00 48.53 - 10.45 51.08 1962 0.00 0.50 1.19 1.16 1.14 1.01 0.45 1.22 0.00 0.00 0.18 0.47 0.66 0.00 1.19 0.00 0.00 0.00 1.68 0.82 1.50 82.05 0.00 95.20 - 10.45 51.08 1963 0.00 0.74 2.38 2.38 2.24 1.89 0.88 2.38 0.00 0.00 0.29 0.74 0.93 0.00 2.28 0.00 0.00 0.00 3.28 1.59 2.93 78.85 0.00 103.80 - 10.45 51.08 1964 0.00 1.02 3.90 4.06 3.72 2.98 1.48 3.96 0.00 0.00 0.43 1.08 1.36 0.00 3.74 0.00 0.00 0.00 5.45 2.60 4.87 45.04 0.00 85.70 - 10.45 51.08 1965 0.00 1.27 5.66 6.70 5.45 4.47 2.20 5.81 0.00 0.00 0.57 1.41 1.76 0.00 5.42 0.00 0.00 0.00 7.98 3.83 7.14 46.46 0.00 106.12 - 10.45 51.08 1966 0.00 1.43 8.22 8.45 8.06 6.08 3.30 8.61 0.00 0.00 0.68 1.64 2.07 0.00 7.74 0.00 0.00 0.00 11.84 5.66 10.58 0.00 0.00 84.38 - 10.45 51.08 1967 0.00 1.47 10.34 11.70 10.21 7.19 4.20 10.91 0.00 0.00 0.74 1.72 2.22 0.00 9.79 0.00 0.00 0.00 15.03 6.54 13.42 0.00 0.00 105.50 - 10.45 51.08 1968 0.00 1.43 12.00 13.83 12.00 7.97 4.99 12.86 0.00 0.00 0.78 1.72 2.30 0.00 11.36 0.00 0.00 0.00 17.75 7.79 15.82 0.00 0.00 122.58 - 10.45 51.08 1969 0.00 1.71 13.13 16.07 13.33 8.31 5.63 14.33 0.00 0.00 0.75 1.58 2.20 0.00 12.39 0.00 0.00 0.00 19.79 8.56 17.62 0.00 0.00 135.38 - 10.45 51.08 1970 0.00 1.27 15.06 17.86 14.25 8.87 6.11 15.34 0.00 0.00 0.70 1.41 2.02 0.00 14.14 0.00 0.00 0.00 21.24 10.20 18.88 0.00 0.00 147.34 - 10.45 51.08 1971 0.00 1.29 14.57 19.22 14.79 8.02 6.44 15.96 0.00 0.00 0.64 1.17 1.83 0.00 13.20 0.00 0.00 0.00 22.14 7.93 22.60 0.00 0.00 149.79 - 10.45 51.08 1972 0.00 1.30 12.28 20.49 15.20 7.18 6.72 16.43 0.00 0.00 0.60 0.95 1.73 0.00 14.05 0.00 0.00 0.00 24.37 8.28 17.37 0.00 0.00 146.95 - 10.45 51.08 1973 0.00 0.26 12.02 21.53 15.21 6.25 6.85 16.50 0.00 0.00 0.51 0.77 1.51 0.00 12.14 0.00 0.00 0.00 21.54 8.04 20.17 0.00 0.00 143.30 - 10.45 51.08 1974 0.00 0.33 16.24 25.91 15.08 4.73 6.96 16.43 0.00 0.00 0.46 0.55 1.41 0.00 10.58 0.00 0.00 0.00 21.95 7.81 17.38 0.00 0.00 145.82 - 10.45 51.08 1975 0.00 0.35 10.36 21.40 15.27 5.29 7.08 16.64 0.00 0.00 0.40 0.48 1.37 0.00 7.76 0.00 0.00 0.00 22.46 8.24 23.19 0.00 0.00 140.26 - 10.45 51.08 1976 0.00 0.57 8.63 25.09 15.51 5.11 7.36 17.00 0.00 0.00 0.37 0.27 1.08 0.00 7.14 0.00 0.00 0.00 23.08 9.21 14.08 0.00 0.00 134.50 - 10.45 51.08 1977 0.00 0.00 9.92 25.57 15.62 2.82 7.44 16.82 0.00 0.00 0.24 0.25 1.01 0.00 4.61 0.00 0.00 0.00 22.59 6.61 14.85 0.00 0.00 128.36 - 10.45 51.08 1978 0.00 0.00 7.18 26.56 14.88 2.48 7.41 16.54 0.00 0.00 0.17 0.13 0.80 0.00 6.01 0.00 0.00 0.00 22.24 6.42 14.60 0.00 0.00 125.43 - 10.45 51.08 1979 0.00 0.00 10.97 27.87 15.36 2.97 7.65 19.57 0.00 0.00 0.13 0.05 0.73 0.00 3.81 0.00 0.00 0.00 23.06 6.52 17.31 0.00 0.00 136.01 - 10.45 51.08 1980 0.00 0.00 7.62 29.84 15.48 2.57 7.93 15.70 0.00 0.00 0.10 0.04 0.77 0.00 5.42 0.00 0.00 0.00 23.31 8.10 14.31 0.00 0.00 131.20 - 10.45 51.08 1981 0.00 0.00 4.84 38.93 15.51 2.20 8.17 18.65 0.00 0.00 0.51 0.02 0.58 0.00 3.00 0.00 0.00 0.00 23.52 5.61 14.40 0.00 0.00 135.94 - 10.45 51.08 1982 0.00 0.00 4.74 30.47 15.62 1.89 8.72 17.71 0.00 0.00 0.00 0.02 0.49 0.00 4.66 0.00 0.00 0.00 23.63 5.54 14.55 0.00 0.00 128.04 - 10.45 51.08 1983 0.00 0.00 6.41 33.84 15.12 1.59 8.49 14.08 0.00 0.00 0.00 0.01 0.44 0.00 3.88 0.00 0.00 0.00 23.15 6.89 16.87 0.00 0.00 130.76 - 10.45 51.08 1984 0.00 0.00 5.61 35.04 14.85 0.67 8.60 13.96 0.00 0.00 0.00 0.01 0.40 0.00 1.52 0.00 0.00 0.00 25.35 4.31 12.96 0.00 0.00 123.27 - 10.45 51.08 1985 0.00 0.00 2.81 35.60 14.30 2.54 8.51 18.52 0.00 0.00 0.00 0.00 0.22 0.00 4.96 0.00 0.00 0.00 23.69 4.03 12.52 0.00 0.00 127.70 - 10.45 51.08 1986 0.00 0.00 2.86 37.69 17.48 0.27 8.93 11.83 0.00 0.00 0.00 0.00 0.15 0.00 0.23 0.00 0.00 0.00 21.26 4.12 15.92 0.00 0.00 120.75 - 10.45 51.08 1987 0.00 0.00 2.77 40.30 14.03 0.88 9.34 12.22 0.00 0.00 0.00 0.00 1.51 0.00 2.51 0.00 0.00 0.00 21.39 3.97 12.22 0.00 0.00 121.16 - 10.45 51.08 1988 0.00 0.00 2.69 42.68 16.76 0.12 9.58 15.21 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 24.45 5.68 12.38 0.00 0.00 129.53 - 10.45 51.08 1989 0.00 0.00 2.56 45.64 13.09 1.98 9.95 11.39 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 23.33 3.20 12.43 0.00 0.00 123.57 - 10.45 51.08 1990 0.00 0.00 2.37 47.21 15.28 0.00 10.05 11.01 0.00 0.00 0.00 0.05 0.00 0.00 0.00 0.00 0.00 0.00 19.02 2.96 12.01 0.00 0.00 119.94 - 10.45 51.08 1991 0.00 0.00 2.24 62.65 11.47 0.00 10.14 13.89 0.00 0.00 0.00 0.69 0.00 0.00 0.00 0.00 0.00 0.00 18.85 2.83 11.90 0.00 0.00 134.67 - 10.45 51.08 1992 0.00 0.00 4.21 44.25 10.73 0.00 10.02 12.36 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 17.83 4.39 11.25 0.00 0.00 115.04 - 10.45 51.08 1993 0.00 0.00 1.48 62.50 10.21 0.00 9.97 8.08 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 20.03 1.97 10.77 0.00 0.00 125.01 - 10.45 51.08 1994 0.00 0.00 1.49 43.67 10.52 0.00 10.38 8.36 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 19.80 3.83 11.15 0.00 0.00 109.20 - 10.45 51.08 1995 0.00 0.00 3.76 49.82 10.87 0.00 10.85 8.69 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 16.41 1.60 11.58 0.00 0.00 113.57 - 10.45 51.08 1996 0.00 0.00 1.10 51.06 10.96 0.00 11.39 8.84 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 16.70 3.45 11.79 0.00 0.00 115.28 - 10.45 51.08 1997 0.00 0.00 1.04 53.98 13.74 0.00 11.66 8.70 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 16.43 1.12 11.60 0.00 0.00 118.27 - 10.45 51.08 1998 0.00 0.00 0.99 56.68 9.81 0.00 11.93 8.65 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 19.74 1.07 11.53 0.00 0.00 120.40 - 10.45 51.08 1999 0.00 0.00 0.93 59.26 9.52 0.00 12.14 8.44 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 15.02 1.00 11.26 0.00 0.00 117.58 - 10.45 51.08 2000 0.00 0.00 3.21 61.38 9.34 0.00 12.28 8.32 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 14.80 0.96 11.09 0.00 0.00 121.39 - 10.45 51.08 2001 0.00 0.00 0.54 63.75 12.11 0.00 12.48 8.05 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 17.83 0.90 10.73 0.00 0.00 126.39 - 10.45 51.08 2002 0.00 0.00 2.84 65.50 7.90 0.00 12.53 7.79 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 12.98 0.84 14.01 0.00 0.00 124.38 - 10.45 51.08 2003 0.00 0.00 0.23 66.50 10.65 0.00 12.36 7.42 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 12.37 0.77 9.06 0.00 0.00 119.36 - 10.45 51.08 2004 0.00 0.00 0.21 67.67 9.63 0.00 12.28 7.07 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 18.95 0.71 8.64 0.00 0.00 125.15 - 10.45 51.08 2005 0.00 0.00 0.19 68.46 5.56 0.00 12.21 6.78 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 9.80 0.65 8.29 0.00 0.00 111.94 - 10.45 51.08 2006 0.00 0.00 2.51 69.56 5.28 0.00 12.15 6.47 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 9.35 0.61 11.60 0.00 0.00 117.52 - 10.45 51.08 2007 0.00 0.00 0.00 71.22 5.13 0.00 12.33 6.32 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 9.13 0.56 7.02 0.00 0.00 111.72 - 10.45 51.08 2008 0.00 0.00 0.00 111.49 11.39 0.00 12.34 9.98 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 9.00 0.53 6.92 0.00 0.00 161.65 - 10.45 51.08 2009 0.00 0.00 0.00 63.74 3.64 0.00 12.31 5.29 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 12.32 0.49 6.62 0.00 0.00 104.41 - 10.45 51.08 2010 0.00 0.00 0.00 68.63 3.52 0.00 12.34 8.93 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 11.45 0.46 6.42 0.00 0.00 111.75 - 10.45 51.08 2011 0.00 0.00 0.00 70.73 3.44 0.00 12.49 4.43 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 6.96 2.34 6.33 0.00 0.00 106.71 - 10.45 51.08 2012 0.00 0.00 0.00 73.31 3.41 0.00 12.67 4.40 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 6.92 0.28 6.29 0.00 0.00 107.27 diff --git a/rLPJGUESS/inst/extdata/outputsForTests/run_patcharea/outDirectory/nmass.out b/rLPJGUESS/inst/extdata/outputsForTests/run_patcharea/outDirectory/nmass.out deleted file mode 100644 index a775325..0000000 --- a/rLPJGUESS/inst/extdata/outputsForTests/run_patcharea/outDirectory/nmass.out +++ /dev/null @@ -1,63 +0,0 @@ - Lon Lat Year Abi_alb BES Bet_pen Bet_pub Car_bet Cor_ave Fag_syl Fra_exc Jun_oxy MRS Pic_abi Pic_sit Pin_syl Pin_hal Pop_tre Que_coc Que_ile Que_pub Que_rob Til_cor Ulm_gla C3_gr C4_gr Total - 10.45 51.08 1951 0.00 0.00 0.00 0.00 0.00 0.00 821.89 16.70 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 838.59 - 10.45 51.08 1952 0.00 0.00 0.00 0.00 0.00 0.00 831.22 16.69 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 847.91 - 10.45 51.08 1953 0.00 0.00 0.00 0.00 0.00 0.00 842.04 8.34 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 850.38 - 10.45 51.08 1954 0.00 0.00 0.00 0.00 0.00 0.00 854.12 8.34 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 862.46 - 10.45 51.08 1955 0.00 0.00 0.00 0.00 0.00 0.00 861.34 8.33 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 869.67 - 10.45 51.08 1956 0.00 0.00 0.00 0.00 0.00 0.00 867.80 8.33 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 876.13 - 10.45 51.08 1957 0.00 0.00 0.00 0.00 0.00 0.00 876.28 8.33 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 884.61 - 10.45 51.08 1958 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 - 10.45 51.08 1959 0.00 0.86 0.80 1.49 1.01 0.48 0.42 1.35 0.00 0.00 0.14 0.43 0.68 0.00 0.96 0.00 0.00 0.00 0.96 0.64 1.24 64.32 0.00 75.79 - 10.45 51.08 1960 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 - 10.45 51.08 1961 0.00 0.79 0.96 0.85 0.85 0.92 0.32 0.91 0.00 0.00 0.21 0.60 0.68 0.00 0.91 0.00 0.00 0.00 1.29 0.58 1.13 64.32 0.00 75.32 - 10.45 51.08 1962 0.00 1.59 2.35 2.29 2.21 2.19 0.86 2.36 0.00 0.00 0.42 1.14 1.32 0.00 2.30 0.00 0.00 0.00 3.27 1.58 2.91 131.17 0.00 157.97 - 10.45 51.08 1963 0.00 2.41 4.99 5.21 4.71 4.44 1.85 5.02 0.00 0.00 0.68 1.82 2.04 0.00 4.79 0.00 0.00 0.00 6.94 3.28 6.18 124.07 0.00 178.44 - 10.45 51.08 1964 0.00 3.36 9.07 9.88 8.66 7.65 3.43 9.23 0.00 0.00 1.04 2.72 3.06 0.00 8.68 0.00 0.00 0.00 12.74 5.94 11.35 82.06 0.00 178.86 - 10.45 51.08 1965 0.00 4.12 14.15 15.75 13.62 11.33 5.45 14.54 0.00 0.00 1.38 3.55 4.04 0.00 13.45 0.00 0.00 0.00 20.04 9.27 17.88 46.46 0.00 195.05 - 10.45 51.08 1966 0.00 4.61 20.15 22.09 19.57 15.15 7.89 20.91 0.00 0.00 1.68 4.22 4.84 0.00 19.03 0.00 0.00 0.00 28.84 13.08 25.71 0.00 0.00 207.77 - 10.45 51.08 1967 0.00 4.71 25.72 29.59 25.14 18.21 10.20 26.91 0.00 0.00 1.83 4.43 5.25 0.00 24.34 0.00 0.00 0.00 37.16 16.27 33.10 0.00 0.00 262.87 - 10.45 51.08 1968 0.00 4.67 30.12 36.35 29.73 20.30 12.18 31.94 0.00 0.00 1.93 4.46 5.54 0.00 28.47 0.00 0.00 0.00 44.17 19.21 39.30 0.00 0.00 308.37 - 10.45 51.08 1969 0.00 4.46 33.49 43.07 33.43 21.36 13.85 36.00 0.00 0.00 1.86 4.15 5.38 0.00 31.53 0.00 0.00 0.00 49.85 21.31 44.30 0.00 0.00 344.05 - 10.45 51.08 1970 0.00 3.65 35.88 48.84 36.26 21.55 15.18 39.11 0.00 0.00 1.76 3.76 5.08 0.00 33.46 0.00 0.00 0.00 54.25 22.65 48.15 0.00 0.00 369.57 - 10.45 51.08 1971 0.00 3.08 35.30 53.98 38.36 20.09 16.23 41.44 0.00 0.00 1.64 3.24 4.76 0.00 32.62 0.00 0.00 0.00 57.59 21.38 51.04 0.00 0.00 380.77 - 10.45 51.08 1972 0.00 2.30 33.74 58.35 39.75 18.54 17.00 43.04 0.00 0.00 1.54 2.72 4.55 0.00 31.30 0.00 0.00 0.00 59.86 21.93 48.03 0.00 0.00 382.65 - 10.45 51.08 1973 0.00 1.22 34.50 64.24 41.05 16.90 17.78 44.62 0.00 0.00 1.40 2.33 4.23 0.00 27.53 0.00 0.00 0.00 59.57 22.19 50.76 0.00 0.00 388.31 - 10.45 51.08 1974 0.00 1.14 34.53 68.30 41.41 15.34 18.14 45.11 0.00 0.00 1.28 1.91 4.05 0.00 23.30 0.00 0.00 0.00 60.74 22.05 48.57 0.00 0.00 385.87 - 10.45 51.08 1975 0.00 0.90 28.59 70.70 43.22 15.02 19.12 47.20 0.00 0.00 1.17 1.60 3.76 0.00 19.63 0.00 0.00 0.00 63.61 22.71 50.78 0.00 0.00 388.02 - 10.45 51.08 1976 0.00 0.57 27.61 79.17 44.97 13.41 20.17 49.36 0.00 0.00 1.09 1.28 3.41 0.00 17.90 0.00 0.00 0.00 66.37 22.64 44.20 0.00 0.00 392.15 - 10.45 51.08 1977 0.00 0.00 27.23 82.02 44.89 11.10 20.36 49.38 0.00 0.00 0.86 1.17 3.21 0.00 15.38 0.00 0.00 0.00 66.15 20.08 45.15 0.00 0.00 386.98 - 10.45 51.08 1978 0.00 0.00 25.10 88.27 45.43 10.71 20.97 50.56 0.00 0.00 0.72 0.97 2.90 0.00 15.54 0.00 0.00 0.00 67.78 20.33 46.18 0.00 0.00 395.46 - 10.45 51.08 1979 0.00 0.00 25.84 97.81 47.38 10.49 22.15 52.88 0.00 0.00 0.65 0.86 2.78 0.00 13.65 0.00 0.00 0.00 70.95 20.91 48.24 0.00 0.00 414.59 - 10.45 51.08 1980 0.00 0.00 20.99 106.75 48.66 9.37 23.23 50.91 0.00 0.00 0.58 0.83 2.67 0.00 13.82 0.00 0.00 0.00 73.19 21.19 46.39 0.00 0.00 418.57 - 10.45 51.08 1981 0.00 0.00 18.39 116.40 49.51 8.30 24.11 52.57 0.00 0.00 0.51 0.80 2.44 0.00 11.51 0.00 0.00 0.00 74.84 18.85 47.33 0.00 0.00 425.57 - 10.45 51.08 1982 0.00 0.00 18.68 118.40 51.03 7.28 25.32 50.94 0.00 0.00 0.00 0.79 2.30 0.00 11.63 0.00 0.00 0.00 77.43 19.13 48.86 0.00 0.00 431.77 - 10.45 51.08 1983 0.00 0.00 18.37 124.64 50.72 6.29 25.24 47.50 0.00 0.00 0.00 0.77 2.19 0.00 9.11 0.00 0.00 0.00 77.25 18.82 48.58 0.00 0.00 429.48 - 10.45 51.08 1984 0.00 0.00 15.71 132.12 51.31 5.34 25.97 48.31 0.00 0.00 0.00 0.76 1.96 0.00 6.81 0.00 0.00 0.00 78.57 16.33 45.54 0.00 0.00 428.75 - 10.45 51.08 1985 0.00 0.00 13.04 139.63 51.61 5.20 26.51 48.72 0.00 0.00 0.00 0.76 1.75 0.00 6.74 0.00 0.00 0.00 75.82 16.16 45.92 0.00 0.00 431.86 - 10.45 51.08 1986 0.00 0.00 13.31 152.05 53.72 2.93 28.19 43.59 0.00 0.00 0.00 0.75 1.62 0.00 2.28 0.00 0.00 0.00 75.55 16.48 47.90 0.00 0.00 438.37 - 10.45 51.08 1987 0.00 0.00 13.41 165.03 51.50 2.87 29.63 45.09 0.00 0.00 0.00 0.75 1.51 0.00 2.51 0.00 0.00 0.00 77.63 16.50 45.32 0.00 0.00 451.74 - 10.45 51.08 1988 0.00 0.00 13.51 180.08 52.86 2.09 31.04 46.37 0.00 0.00 0.00 0.75 0.00 0.00 0.00 0.00 0.00 0.00 79.88 16.56 46.60 0.00 0.00 469.73 - 10.45 51.08 1989 0.00 0.00 13.42 192.23 49.79 1.98 32.19 43.13 0.00 0.00 0.00 0.75 0.00 0.00 0.00 0.00 0.00 0.00 77.21 14.10 47.27 0.00 0.00 472.07 - 10.45 51.08 1990 0.00 0.00 13.24 201.66 49.58 0.00 32.65 43.04 0.00 0.00 0.00 0.75 0.00 0.00 0.00 0.00 0.00 0.00 73.40 13.82 47.17 0.00 0.00 475.31 - 10.45 51.08 1991 0.00 0.00 13.20 215.90 46.42 0.00 33.66 43.72 0.00 0.00 0.00 0.69 0.00 0.00 0.00 0.00 0.00 0.00 74.60 13.76 47.92 0.00 0.00 489.88 - 10.45 51.08 1992 0.00 0.00 12.95 206.73 45.62 0.00 33.65 39.18 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 73.50 13.48 47.24 0.00 0.00 472.35 - 10.45 51.08 1993 0.00 0.00 10.26 218.01 45.44 0.00 34.26 35.24 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 73.46 11.05 47.21 0.00 0.00 474.92 - 10.45 51.08 1994 0.00 0.00 10.40 213.77 46.89 0.00 36.16 36.48 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 72.07 11.20 48.87 0.00 0.00 475.84 - 10.45 51.08 1995 0.00 0.00 10.55 233.97 48.38 0.00 38.34 37.79 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 70.55 9.08 50.61 0.00 0.00 499.26 - 10.45 51.08 1996 0.00 0.00 7.95 249.78 49.34 0.00 40.30 38.76 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 72.37 9.11 51.90 0.00 0.00 519.51 - 10.45 51.08 1997 0.00 0.00 7.94 267.12 49.70 0.00 41.58 39.14 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 73.10 6.80 52.41 0.00 0.00 537.79 - 10.45 51.08 1998 0.00 0.00 7.93 285.82 46.32 0.00 43.04 39.65 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 74.06 6.77 53.09 0.00 0.00 556.67 - 10.45 51.08 1999 0.00 0.00 7.88 302.42 46.38 0.00 44.07 39.81 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 69.98 6.70 53.30 0.00 0.00 570.54 - 10.45 51.08 2000 0.00 0.00 7.87 321.80 46.75 0.00 45.44 40.24 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 70.75 6.68 53.88 0.00 0.00 593.40 - 10.45 51.08 2001 0.00 0.00 5.20 338.78 46.59 0.00 46.47 40.21 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 70.70 6.61 53.84 0.00 0.00 608.41 - 10.45 51.08 2002 0.00 0.00 5.17 355.45 42.58 0.00 47.23 40.24 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 66.33 6.54 53.88 0.00 0.00 617.42 - 10.45 51.08 2003 0.00 0.00 2.57 371.70 42.34 0.00 47.70 40.08 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 66.07 6.48 49.19 0.00 0.00 626.12 - 10.45 51.08 2004 0.00 0.00 2.54 384.18 38.13 0.00 47.94 39.75 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 65.51 6.41 48.79 0.00 0.00 633.26 - 10.45 51.08 2005 0.00 0.00 2.53 399.40 34.19 0.00 48.46 39.64 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 56.63 6.34 48.66 0.00 0.00 635.85 - 10.45 51.08 2006 0.00 0.00 2.51 417.76 34.04 0.00 49.20 39.53 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 56.46 6.31 48.52 0.00 0.00 654.34 - 10.45 51.08 2007 0.00 0.00 0.00 436.63 34.09 0.00 50.31 39.69 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 56.68 6.25 44.28 0.00 0.00 667.93 - 10.45 51.08 2008 0.00 0.00 0.00 458.52 34.04 0.00 51.19 40.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 57.14 6.22 44.64 0.00 0.00 691.75 - 10.45 51.08 2009 0.00 0.00 0.00 427.74 26.31 0.00 51.61 35.36 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 56.83 6.17 44.39 0.00 0.00 648.42 - 10.45 51.08 2010 0.00 0.00 0.00 449.05 26.35 0.00 52.65 35.49 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 52.65 6.15 44.56 0.00 0.00 666.90 - 10.45 51.08 2011 0.00 0.00 0.00 468.83 26.45 0.00 53.79 31.25 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 48.56 6.14 44.82 0.00 0.00 679.83 - 10.45 51.08 2012 0.00 0.00 0.00 490.38 26.62 0.00 55.31 31.51 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 48.98 4.09 45.20 0.00 0.00 702.09 diff --git a/rLPJGUESS/inst/extdata/outputsForTests/run_patcharea/outDirectory/npool.out b/rLPJGUESS/inst/extdata/outputsForTests/run_patcharea/outDirectory/npool.out deleted file mode 100644 index e37c67f..0000000 --- a/rLPJGUESS/inst/extdata/outputsForTests/run_patcharea/outDirectory/npool.out +++ /dev/null @@ -1,63 +0,0 @@ - Lon Lat Year VegN LitterN SoilN Total - 10.45 51.08 1951 0.0839 0.0367 1.1482 1.2687 - 10.45 51.08 1952 0.0848 0.0357 1.1472 1.2676 - 10.45 51.08 1953 0.0850 0.0351 1.1467 1.2668 - 10.45 51.08 1954 0.0862 0.0348 1.1463 1.2673 - 10.45 51.08 1955 0.0870 0.0347 1.1465 1.2682 - 10.45 51.08 1956 0.0876 0.0346 1.1470 1.2692 - 10.45 51.08 1957 0.0885 0.0336 1.1466 1.2686 - 10.45 51.08 1958 0.0000 0.1106 1.1618 1.2724 - 10.45 51.08 1959 0.0076 0.1039 1.1640 1.2755 - 10.45 51.08 1960 0.0000 0.1015 1.1817 1.2831 - 10.45 51.08 1961 0.0075 0.0962 1.1809 1.2847 - 10.45 51.08 1962 0.0158 0.0917 1.1789 1.2863 - 10.45 51.08 1963 0.0178 0.0889 1.1842 1.2909 - 10.45 51.08 1964 0.0179 0.0850 1.1881 1.2909 - 10.45 51.08 1965 0.0195 0.0831 1.1908 1.2933 - 10.45 51.08 1966 0.0208 0.0811 1.1923 1.2941 - 10.45 51.08 1967 0.0263 0.0780 1.1926 1.2968 - 10.45 51.08 1968 0.0308 0.0756 1.1932 1.2996 - 10.45 51.08 1969 0.0344 0.0743 1.1950 1.3038 - 10.45 51.08 1970 0.0370 0.0731 1.1965 1.3066 - 10.45 51.08 1971 0.0381 0.0705 1.1981 1.3067 - 10.45 51.08 1972 0.0383 0.0714 1.2014 1.3111 - 10.45 51.08 1973 0.0388 0.0686 1.2018 1.3093 - 10.45 51.08 1974 0.0386 0.0675 1.2037 1.3098 - 10.45 51.08 1975 0.0388 0.0650 1.2040 1.3078 - 10.45 51.08 1976 0.0392 0.0629 1.2045 1.3066 - 10.45 51.08 1977 0.0387 0.0633 1.2069 1.3089 - 10.45 51.08 1978 0.0395 0.0611 1.2070 1.3076 - 10.45 51.08 1979 0.0415 0.0589 1.2058 1.3062 - 10.45 51.08 1980 0.0419 0.0579 1.2057 1.3055 - 10.45 51.08 1981 0.0426 0.0575 1.2069 1.3070 - 10.45 51.08 1982 0.0432 0.0546 1.2060 1.3038 - 10.45 51.08 1983 0.0429 0.0528 1.2069 1.3027 - 10.45 51.08 1984 0.0429 0.0540 1.2081 1.3050 - 10.45 51.08 1985 0.0432 0.0513 1.2069 1.3014 - 10.45 51.08 1986 0.0438 0.0508 1.2061 1.3007 - 10.45 51.08 1987 0.0452 0.0516 1.2068 1.3036 - 10.45 51.08 1988 0.0470 0.0486 1.2053 1.3008 - 10.45 51.08 1989 0.0472 0.0470 1.2047 1.2989 - 10.45 51.08 1990 0.0475 0.0455 1.2046 1.2976 - 10.45 51.08 1991 0.0490 0.0439 1.2034 1.2963 - 10.45 51.08 1992 0.0472 0.0436 1.2030 1.2939 - 10.45 51.08 1993 0.0475 0.0438 1.2030 1.2943 - 10.45 51.08 1994 0.0476 0.0436 1.2015 1.2928 - 10.45 51.08 1995 0.0499 0.0433 1.2007 1.2939 - 10.45 51.08 1996 0.0520 0.0441 1.2008 1.2969 - 10.45 51.08 1997 0.0538 0.0420 1.1997 1.2955 - 10.45 51.08 1998 0.0557 0.0407 1.1981 1.2945 - 10.45 51.08 1999 0.0571 0.0395 1.1975 1.2940 - 10.45 51.08 2000 0.0593 0.0377 1.1956 1.2927 - 10.45 51.08 2001 0.0608 0.0372 1.1946 1.2926 - 10.45 51.08 2002 0.0617 0.0380 1.1950 1.2947 - 10.45 51.08 2003 0.0626 0.0359 1.1926 1.2912 - 10.45 51.08 2004 0.0633 0.0353 1.1920 1.2906 - 10.45 51.08 2005 0.0636 0.0345 1.1905 1.2886 - 10.45 51.08 2006 0.0654 0.0331 1.1886 1.2871 - 10.45 51.08 2007 0.0668 0.0335 1.1882 1.2885 - 10.45 51.08 2008 0.0692 0.0319 1.1855 1.2866 - 10.45 51.08 2009 0.0648 0.0356 1.1859 1.2863 - 10.45 51.08 2010 0.0667 0.0356 1.1855 1.2879 - 10.45 51.08 2011 0.0680 0.0344 1.1840 1.2864 - 10.45 51.08 2012 0.0702 0.0332 1.1827 1.2861 diff --git a/rLPJGUESS/inst/extdata/outputsForTests/run_patcharea/outDirectory/nsources.out b/rLPJGUESS/inst/extdata/outputsForTests/run_patcharea/outDirectory/nsources.out deleted file mode 100644 index 6dccd8b..0000000 --- a/rLPJGUESS/inst/extdata/outputsForTests/run_patcharea/outDirectory/nsources.out +++ /dev/null @@ -1,63 +0,0 @@ - Lon Lat Year dep fix fert input min imm netmin Total - 10.45 51.08 1951 11.23 1.93 0.00 13.16 124.06 38.67 85.38 98.55 - 10.45 51.08 1952 11.23 1.72 0.00 12.95 131.76 32.40 99.36 112.31 - 10.45 51.08 1953 11.23 1.94 0.00 13.17 143.83 45.31 98.52 111.70 - 10.45 51.08 1954 11.23 2.11 0.00 13.34 119.58 33.30 86.28 99.62 - 10.45 51.08 1955 11.23 2.04 0.00 13.27 109.29 30.62 78.68 91.94 - 10.45 51.08 1956 11.23 2.14 0.00 13.37 106.86 31.11 75.75 89.12 - 10.45 51.08 1957 11.23 2.17 0.00 13.40 129.17 37.12 92.04 105.45 - 10.45 51.08 1958 11.23 0.00 0.00 11.23 131.31 169.89 -38.58 -27.35 - 10.45 51.08 1959 11.23 2.68 0.00 13.91 140.62 96.80 43.82 57.73 - 10.45 51.08 1960 14.10 0.00 0.00 14.10 154.53 231.30 -76.77 -62.67 - 10.45 51.08 1961 14.10 2.09 0.00 16.19 150.07 91.06 59.01 75.20 - 10.45 51.08 1962 14.10 2.03 0.00 16.13 174.33 67.30 107.03 123.15 - 10.45 51.08 1963 14.10 1.82 0.00 15.92 146.98 82.17 64.81 80.73 - 10.45 51.08 1964 14.10 1.72 0.00 15.82 180.47 82.32 98.15 113.98 - 10.45 51.08 1965 14.10 2.66 0.00 16.76 141.30 64.43 76.87 93.63 - 10.45 51.08 1966 14.10 2.89 0.00 16.99 158.39 47.92 110.47 127.46 - 10.45 51.08 1967 14.10 3.24 0.00 17.34 170.84 60.22 110.62 127.96 - 10.45 51.08 1968 14.10 3.01 0.00 17.11 170.34 51.35 118.99 136.10 - 10.45 51.08 1969 14.10 2.75 0.00 16.85 159.35 45.78 113.58 130.43 - 10.45 51.08 1970 16.97 2.60 0.00 19.57 169.76 42.25 127.51 147.08 - 10.45 51.08 1971 16.97 2.71 0.00 19.68 213.25 61.12 152.13 171.82 - 10.45 51.08 1972 16.97 2.95 0.00 19.92 157.56 50.12 107.44 127.36 - 10.45 51.08 1973 16.97 2.68 0.00 19.64 221.29 55.65 165.64 185.29 - 10.45 51.08 1974 16.97 2.89 0.00 19.86 192.65 59.42 133.23 153.09 - 10.45 51.08 1975 16.97 2.50 0.00 19.47 230.86 67.22 163.64 183.11 - 10.45 51.08 1976 16.97 2.64 0.00 19.60 217.56 65.33 152.23 171.83 - 10.45 51.08 1977 16.97 2.58 0.00 19.55 155.19 51.96 103.23 122.78 - 10.45 51.08 1978 16.97 3.10 0.00 20.07 199.40 52.93 146.47 166.54 - 10.45 51.08 1979 16.97 2.78 0.00 19.75 201.37 47.54 153.82 173.58 - 10.45 51.08 1980 17.99 2.82 0.00 20.81 193.50 50.11 143.38 164.19 - 10.45 51.08 1981 17.99 2.70 0.00 20.69 169.09 46.44 122.64 143.34 - 10.45 51.08 1982 17.99 2.40 0.00 20.40 237.49 68.63 168.86 189.26 - 10.45 51.08 1983 17.99 2.01 0.00 20.00 205.12 72.49 132.63 152.63 - 10.45 51.08 1984 17.99 2.62 0.00 20.62 151.37 44.53 106.84 127.46 - 10.45 51.08 1985 17.99 2.65 0.00 20.65 211.69 54.61 157.08 177.73 - 10.45 51.08 1986 17.99 2.19 0.00 20.18 184.16 46.66 137.50 157.68 - 10.45 51.08 1987 17.99 2.92 0.00 20.91 140.78 35.78 105.00 125.91 - 10.45 51.08 1988 17.99 2.52 0.00 20.51 220.75 58.48 162.27 182.79 - 10.45 51.08 1989 17.99 2.45 0.00 20.44 215.86 68.30 147.56 168.00 - 10.45 51.08 1990 19.66 2.54 0.00 22.20 204.45 68.45 136.00 158.20 - 10.45 51.08 1991 19.66 2.74 0.00 22.40 204.92 60.76 144.16 166.56 - 10.45 51.08 1992 19.66 1.82 0.00 21.47 206.23 68.00 138.23 159.71 - 10.45 51.08 1993 19.66 2.30 0.00 21.96 158.05 46.20 111.85 133.81 - 10.45 51.08 1994 19.66 2.39 0.00 22.04 193.35 52.85 140.49 162.54 - 10.45 51.08 1995 19.66 2.78 0.00 22.43 167.03 46.29 120.74 143.18 - 10.45 51.08 1996 19.66 3.21 0.00 22.87 134.31 30.55 103.77 126.63 - 10.45 51.08 1997 19.66 3.07 0.00 22.73 195.45 50.66 144.79 167.52 - 10.45 51.08 1998 19.66 3.16 0.00 22.82 193.93 49.00 144.93 167.75 - 10.45 51.08 1999 19.66 2.67 0.00 22.33 195.19 58.53 136.67 159.00 - 10.45 51.08 2000 21.34 2.72 0.00 24.06 207.57 55.81 151.76 175.82 - 10.45 51.08 2001 21.34 2.82 0.00 24.16 184.43 49.15 135.29 159.45 - 10.45 51.08 2002 21.34 3.21 0.00 24.55 157.75 43.94 113.80 138.35 - 10.45 51.08 2003 21.34 2.32 0.00 23.66 223.12 57.49 165.63 189.28 - 10.45 51.08 2004 21.34 2.86 0.00 24.20 182.50 53.21 129.29 153.49 - 10.45 51.08 2005 21.34 2.60 0.00 23.94 202.11 56.00 146.11 170.05 - 10.45 51.08 2006 21.34 2.47 0.00 23.81 198.44 54.96 143.48 167.29 - 10.45 51.08 2007 21.34 2.53 0.00 23.87 164.52 48.19 116.33 140.20 - 10.45 51.08 2008 21.34 2.85 0.00 24.19 201.23 49.69 151.54 175.73 - 10.45 51.08 2009 21.34 2.40 0.00 23.74 171.13 51.12 120.01 143.75 - 10.45 51.08 2010 20.03 2.93 0.00 22.96 146.66 38.77 107.89 130.85 - 10.45 51.08 2011 20.03 2.74 0.00 22.77 186.32 50.36 135.97 158.73 - 10.45 51.08 2012 20.03 2.81 0.00 22.84 183.08 53.66 129.43 152.27 diff --git a/rLPJGUESS/inst/extdata/outputsForTests/run_patcharea/outDirectory/nuptake.out b/rLPJGUESS/inst/extdata/outputsForTests/run_patcharea/outDirectory/nuptake.out deleted file mode 100644 index 0e159ac..0000000 --- a/rLPJGUESS/inst/extdata/outputsForTests/run_patcharea/outDirectory/nuptake.out +++ /dev/null @@ -1,63 +0,0 @@ - Lon Lat Year Abi_alb BES Bet_pen Bet_pub Car_bet Cor_ave Fag_syl Fra_exc Jun_oxy MRS Pic_abi Pic_sit Pin_syl Pin_hal Pop_tre Que_coc Que_ile Que_pub Que_rob Til_cor Ulm_gla C3_gr C4_gr Total - 10.45 51.08 1951 0.00 0.00 0.00 0.00 0.00 0.00 91.11 0.22 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 91.33 - 10.45 51.08 1952 0.00 0.00 0.00 0.00 0.00 0.00 89.72 0.21 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 89.92 - 10.45 51.08 1953 0.00 0.00 0.00 0.00 0.00 0.00 90.56 0.10 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 90.65 - 10.45 51.08 1954 0.00 0.00 0.00 0.00 0.00 0.00 92.06 0.09 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 92.16 - 10.45 51.08 1955 0.00 0.00 0.00 0.00 0.00 0.00 87.57 0.08 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 87.65 - 10.45 51.08 1956 0.00 0.00 0.00 0.00 0.00 0.00 85.92 0.08 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 86.00 - 10.45 51.08 1957 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 - 10.45 51.08 1958 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 - 10.45 51.08 1959 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 - 10.45 51.08 1960 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 - 10.45 51.08 1961 0.00 0.79 0.96 0.85 0.85 0.92 0.32 0.91 0.00 0.00 0.21 0.60 0.68 0.00 0.91 0.00 0.00 0.00 1.29 0.58 1.13 64.33 0.00 75.33 - 10.45 51.08 1962 0.00 0.98 1.97 1.94 1.86 1.75 0.73 1.98 0.00 0.00 0.30 0.79 0.98 0.00 1.92 0.00 0.00 0.00 2.73 1.34 2.44 109.72 0.00 131.43 - 10.45 51.08 1963 0.00 1.32 3.84 4.08 3.65 3.25 1.44 3.88 0.00 0.00 0.45 1.15 1.38 0.00 3.68 0.00 0.00 0.00 5.36 2.52 4.78 75.06 0.00 115.85 - 10.45 51.08 1964 0.00 1.69 6.48 7.08 6.20 5.12 2.47 6.61 0.00 0.00 0.65 1.64 1.95 0.00 6.18 0.00 0.00 0.00 9.11 4.26 8.13 36.92 0.00 104.49 - 10.45 51.08 1965 0.00 1.78 8.98 9.94 8.69 6.67 3.51 9.28 0.00 0.00 0.78 1.91 2.34 0.00 8.51 0.00 0.00 0.00 12.76 5.93 11.40 0.00 0.00 92.48 - 10.45 51.08 1966 0.00 1.77 11.67 13.04 11.40 8.28 4.64 12.18 0.00 0.00 0.87 2.08 2.56 0.00 11.00 0.00 0.00 0.00 16.78 7.64 14.97 0.00 0.00 118.88 - 10.45 51.08 1967 0.00 1.53 13.80 15.97 13.65 9.15 5.61 14.63 0.00 0.00 0.83 1.86 2.48 0.00 13.06 0.00 0.00 0.00 20.18 8.85 17.99 0.00 0.00 139.61 - 10.45 51.08 1968 0.00 1.43 14.80 18.51 14.85 9.31 6.20 15.99 0.00 0.00 0.85 1.76 2.51 0.00 13.96 0.00 0.00 0.00 22.10 9.52 19.68 0.00 0.00 151.47 - 10.45 51.08 1969 0.00 1.22 15.41 20.59 15.74 9.05 6.68 16.96 0.00 0.00 0.71 1.41 2.15 0.00 14.46 0.00 0.00 0.00 23.49 9.92 20.88 0.00 0.00 158.66 - 10.45 51.08 1970 0.00 0.91 15.56 21.90 16.21 8.52 6.98 17.49 0.00 0.00 0.65 1.19 1.90 0.00 14.35 0.00 0.00 0.00 24.26 9.92 21.53 0.00 0.00 161.38 - 10.45 51.08 1971 0.00 0.69 14.31 23.10 16.42 7.45 7.19 17.75 0.00 0.00 0.58 0.89 1.70 0.00 13.35 0.00 0.00 0.00 24.67 8.97 21.87 0.00 0.00 158.95 - 10.45 51.08 1972 0.00 0.51 13.02 23.60 16.19 6.47 7.21 17.56 0.00 0.00 0.54 0.64 1.63 0.00 11.89 0.00 0.00 0.00 24.43 8.48 19.59 0.00 0.00 151.75 - 10.45 51.08 1973 0.00 0.22 13.09 26.48 16.57 5.57 7.53 18.09 0.00 0.00 0.46 0.56 1.41 0.00 10.32 0.00 0.00 0.00 24.17 8.58 20.19 0.00 0.00 153.24 - 10.45 51.08 1974 0.00 0.18 12.08 25.63 15.60 4.70 7.22 17.02 0.00 0.00 0.39 0.35 1.33 0.00 7.93 0.00 0.00 0.00 22.75 7.92 18.01 0.00 0.00 141.10 - 10.45 51.08 1975 0.00 0.09 10.35 28.40 16.97 4.36 7.98 18.59 0.00 0.00 0.36 0.24 1.13 0.00 6.94 0.00 0.00 0.00 24.91 8.36 19.68 0.00 0.00 148.34 - 10.45 51.08 1976 0.00 0.00 9.42 29.99 17.09 3.71 8.16 18.88 0.00 0.00 0.32 0.16 1.02 0.00 6.05 0.00 0.00 0.00 25.32 8.21 16.68 0.00 0.00 145.01 - 10.45 51.08 1977 0.00 0.00 8.27 28.00 15.36 2.80 7.56 17.05 0.00 0.00 0.14 0.16 0.88 0.00 4.64 0.00 0.00 0.00 22.90 6.66 15.05 0.00 0.00 129.46 - 10.45 51.08 1978 0.00 0.00 7.82 31.63 16.23 2.44 8.08 18.07 0.00 0.00 0.11 0.04 0.71 0.00 4.78 0.00 0.00 0.00 24.31 6.89 15.95 0.00 0.00 137.05 - 10.45 51.08 1979 0.00 0.00 7.96 36.23 16.90 2.27 8.63 18.85 0.00 0.00 0.09 0.02 0.68 0.00 4.14 0.00 0.00 0.00 25.50 7.03 16.72 0.00 0.00 145.02 - 10.45 51.08 1980 0.00 0.00 6.14 36.95 16.71 1.87 8.77 17.67 0.00 0.00 0.06 0.02 0.62 0.00 3.99 0.00 0.00 0.00 25.39 6.83 15.54 0.00 0.00 140.57 - 10.45 51.08 1981 0.00 0.00 5.03 39.53 16.35 1.50 8.81 17.39 0.00 0.00 0.00 0.01 0.55 0.00 3.11 0.00 0.00 0.00 24.99 5.76 15.27 0.00 0.00 138.30 - 10.45 51.08 1982 0.00 0.00 5.15 41.09 17.11 1.19 9.39 17.10 0.00 0.00 0.00 0.01 0.44 0.00 3.14 0.00 0.00 0.00 26.21 5.92 16.00 0.00 0.00 142.75 - 10.45 51.08 1983 0.00 0.00 4.46 36.88 15.38 0.91 8.68 14.34 0.00 0.00 0.00 0.00 0.39 0.00 2.15 0.00 0.00 0.00 23.55 5.25 14.34 0.00 0.00 126.33 - 10.45 51.08 1984 0.00 0.00 3.75 41.35 15.71 0.64 9.23 14.90 0.00 0.00 0.00 0.00 0.21 0.00 1.58 0.00 0.00 0.00 24.48 4.40 13.84 0.00 0.00 130.09 - 10.45 51.08 1985 0.00 0.00 2.97 42.79 15.26 0.52 9.20 14.46 0.00 0.00 0.00 0.00 0.18 0.00 1.46 0.00 0.00 0.00 22.73 4.17 13.43 0.00 0.00 127.16 - 10.45 51.08 1986 0.00 0.00 3.08 48.16 16.46 0.27 10.23 13.43 0.00 0.00 0.00 0.00 0.09 0.00 0.50 0.00 0.00 0.00 23.50 4.36 14.55 0.00 0.00 134.64 - 10.45 51.08 1987 0.00 0.00 2.97 50.68 15.27 0.21 10.37 13.34 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 23.35 4.14 13.34 0.00 0.00 133.68 - 10.45 51.08 1988 0.00 0.00 2.88 55.61 15.47 0.11 10.81 13.58 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 23.76 4.05 13.58 0.00 0.00 139.84 - 10.45 51.08 1989 0.00 0.00 2.62 55.04 13.76 0.00 10.77 12.02 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 21.86 3.23 13.12 0.00 0.00 132.41 - 10.45 51.08 1990 0.00 0.00 2.38 55.28 12.94 0.00 10.46 11.35 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 19.61 2.93 12.38 0.00 0.00 127.34 - 10.45 51.08 1991 0.00 0.00 2.34 61.73 12.18 0.00 11.11 11.76 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 20.31 2.92 12.83 0.00 0.00 135.17 - 10.45 51.08 1992 0.00 0.00 2.00 53.68 10.72 0.00 10.17 9.38 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 17.83 2.56 11.26 0.00 0.00 117.60 - 10.45 51.08 1993 0.00 0.00 1.51 55.64 10.58 0.00 10.66 8.44 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 17.82 1.96 11.25 0.00 0.00 117.86 - 10.45 51.08 1994 0.00 0.00 1.63 58.30 11.67 0.00 11.88 9.33 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 18.66 2.12 12.44 0.00 0.00 126.03 - 10.45 51.08 1995 0.00 0.00 1.64 63.90 12.02 0.00 12.56 9.68 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 18.28 1.71 12.90 0.00 0.00 132.68 - 10.45 51.08 1996 0.00 0.00 1.17 65.66 11.84 0.00 12.82 9.66 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 18.24 1.63 12.88 0.00 0.00 133.89 - 10.45 51.08 1997 0.00 0.00 1.09 68.64 11.37 0.00 12.72 9.26 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 17.49 1.15 12.35 0.00 0.00 134.07 - 10.45 51.08 1998 0.00 0.00 1.04 72.88 10.39 0.00 13.17 9.24 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 17.44 1.09 12.31 0.00 0.00 137.56 - 10.45 51.08 1999 0.00 0.00 0.95 73.47 9.89 0.00 12.99 8.84 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 15.71 1.00 11.78 0.00 0.00 134.64 - 10.45 51.08 2000 0.00 0.00 0.93 78.93 9.94 0.00 13.57 8.91 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 15.84 0.99 11.88 0.00 0.00 140.99 - 10.45 51.08 2001 0.00 0.00 0.54 78.57 9.21 0.00 13.36 8.32 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 14.79 0.90 11.09 0.00 0.00 136.78 - 10.45 51.08 2002 0.00 0.00 0.51 80.46 8.11 0.00 13.24 8.08 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 13.47 0.83 10.78 0.00 0.00 135.47 - 10.45 51.08 2003 0.00 0.00 0.23 82.06 7.69 0.00 13.06 7.66 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 12.77 0.77 9.37 0.00 0.00 133.61 - 10.45 51.08 2004 0.00 0.00 0.21 79.29 6.48 0.00 12.66 7.12 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 11.86 0.71 8.70 0.00 0.00 127.03 - 10.45 51.08 2005 0.00 0.00 0.19 83.20 5.71 0.00 12.86 6.99 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 10.10 0.64 8.55 0.00 0.00 128.25 - 10.45 51.08 2006 0.00 0.00 0.00 87.08 5.43 0.00 12.98 6.69 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 9.67 0.62 8.18 0.00 0.00 130.65 - 10.45 51.08 2007 0.00 0.00 0.00 88.55 5.34 0.00 13.28 6.63 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 9.58 0.56 7.37 0.00 0.00 131.31 - 10.45 51.08 2008 0.00 0.00 0.00 93.45 5.11 0.00 13.27 6.67 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 9.63 0.54 7.41 0.00 0.00 136.07 - 10.45 51.08 2009 0.00 0.00 0.00 80.86 3.67 0.00 12.79 5.35 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 8.70 0.49 6.69 0.00 0.00 118.54 - 10.45 51.08 2010 0.00 0.00 0.00 85.19 3.69 0.00 13.38 5.44 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 8.15 0.47 6.79 0.00 0.00 123.11 - 10.45 51.08 2011 0.00 0.00 0.00 88.70 3.62 0.00 13.54 4.70 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 7.39 0.45 6.72 0.00 0.00 125.12 - 10.45 51.08 2012 0.00 0.00 0.00 92.62 3.63 0.00 14.08 4.71 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 7.41 0.29 6.73 0.00 0.00 129.46 diff --git a/rLPJGUESS/inst/extdata/outputsForTests/run_patcharea/outDirectory/runoff.out b/rLPJGUESS/inst/extdata/outputsForTests/run_patcharea/outDirectory/runoff.out deleted file mode 100644 index 24c101b..0000000 --- a/rLPJGUESS/inst/extdata/outputsForTests/run_patcharea/outDirectory/runoff.out +++ /dev/null @@ -1,63 +0,0 @@ - Lon Lat Year Surf Drain Base Total - 10.45 51.08 1951 74.9 98.8 6.9 180.5 - 10.45 51.08 1952 139.2 183.7 18.4 341.3 - 10.45 51.08 1953 33.4 51.9 2.9 88.2 - 10.45 51.08 1954 18.5 140.4 1.0 159.9 - 10.45 51.08 1955 50.2 140.6 10.5 201.3 - 10.45 51.08 1956 113.0 161.7 16.6 291.3 - 10.45 51.08 1957 9.4 131.6 0.5 141.5 - 10.45 51.08 1958 99.9 263.5 10.7 374.1 - 10.45 51.08 1959 35.9 149.0 4.5 189.4 - 10.45 51.08 1960 77.7 227.4 6.7 311.7 - 10.45 51.08 1961 128.5 280.1 15.1 423.7 - 10.45 51.08 1962 3.6 78.6 1.8 84.0 - 10.45 51.08 1963 2.6 53.0 2.8 58.3 - 10.45 51.08 1964 24.5 68.1 0.3 92.8 - 10.45 51.08 1965 22.8 40.5 3.8 67.1 - 10.45 51.08 1966 91.9 113.7 5.8 211.4 - 10.45 51.08 1967 0.9 62.7 0.5 64.0 - 10.45 51.08 1968 21.0 34.9 1.2 57.0 - 10.45 51.08 1969 52.1 42.9 4.2 99.2 - 10.45 51.08 1970 32.7 21.5 1.9 56.1 - 10.45 51.08 1971 0.0 0.1 0.0 0.1 - 10.45 51.08 1972 48.7 0.0 0.2 48.9 - 10.45 51.08 1973 3.6 0.0 0.7 4.3 - 10.45 51.08 1974 17.1 0.0 1.4 18.4 - 10.45 51.08 1975 0.0 3.4 0.0 3.4 - 10.45 51.08 1976 0.1 0.0 0.1 0.2 - 10.45 51.08 1977 86.1 0.0 1.5 87.6 - 10.45 51.08 1978 0.0 10.2 0.0 10.2 - 10.45 51.08 1979 49.7 0.0 3.1 52.7 - 10.45 51.08 1980 0.0 0.0 0.0 0.0 - 10.45 51.08 1981 55.0 0.0 2.2 57.3 - 10.45 51.08 1982 11.8 0.0 1.0 12.8 - 10.45 51.08 1983 50.9 0.0 1.9 52.8 - 10.45 51.08 1984 53.8 0.0 6.0 59.8 - 10.45 51.08 1985 2.7 0.0 0.6 3.4 - 10.45 51.08 1986 23.8 0.0 2.7 26.5 - 10.45 51.08 1987 111.4 6.3 6.7 124.4 - 10.45 51.08 1988 22.0 87.7 4.2 113.9 - 10.45 51.08 1989 6.0 0.0 0.3 6.3 - 10.45 51.08 1990 2.7 0.0 0.4 3.2 - 10.45 51.08 1991 1.2 0.0 0.0 1.2 - 10.45 51.08 1992 49.3 0.0 1.2 50.5 - 10.45 51.08 1993 47.8 0.0 2.1 49.9 - 10.45 51.08 1994 56.5 37.7 2.5 96.7 - 10.45 51.08 1995 39.2 29.7 1.7 70.5 - 10.45 51.08 1996 48.0 36.2 0.3 84.5 - 10.45 51.08 1997 24.3 71.3 1.7 97.4 - 10.45 51.08 1998 38.5 0.0 1.8 40.3 - 10.45 51.08 1999 4.8 11.5 0.8 17.1 - 10.45 51.08 2000 10.5 7.8 2.3 20.6 - 10.45 51.08 2001 21.1 0.0 2.8 23.9 - 10.45 51.08 2002 129.2 44.7 5.1 179.0 - 10.45 51.08 2003 6.5 38.3 0.6 45.5 - 10.45 51.08 2004 58.4 0.0 0.8 59.2 - 10.45 51.08 2005 1.7 0.0 0.7 2.4 - 10.45 51.08 2006 3.7 0.0 0.2 3.8 - 10.45 51.08 2007 143.8 0.0 0.3 144.2 - 10.45 51.08 2008 8.9 3.6 0.8 13.3 - 10.45 51.08 2009 42.5 0.0 1.7 44.2 - 10.45 51.08 2010 136.6 17.8 4.9 159.3 - 10.45 51.08 2011 63.6 44.5 1.0 109.1 - 10.45 51.08 2012 8.9 0.0 0.3 9.2 diff --git a/rLPJGUESS/inst/extdata/outputsForTests/run_patcharea/outDirectory/speciesheight.out b/rLPJGUESS/inst/extdata/outputsForTests/run_patcharea/outDirectory/speciesheight.out deleted file mode 100644 index 2fd9915..0000000 --- a/rLPJGUESS/inst/extdata/outputsForTests/run_patcharea/outDirectory/speciesheight.out +++ /dev/null @@ -1,63 +0,0 @@ - Lon Lat Year Abi_alb BES Bet_pen Bet_pub Car_bet Cor_ave Fag_syl Fra_exc Jun_oxy MRS Pic_abi Pic_sit Pin_syl Pin_hal Pop_tre Que_coc Que_ile Que_pub Que_rob Til_cor Ulm_gla C3_gr C4_gr - 10.45 51.08 1951 0.00 0.00 0.00 0.00 0.00 0.00 26.04 12.56 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 - 10.45 51.08 1952 0.00 0.00 0.00 0.00 0.00 0.00 26.14 12.57 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 - 10.45 51.08 1953 0.00 0.00 0.00 0.00 0.00 0.00 26.25 12.57 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 - 10.45 51.08 1954 0.00 0.00 0.00 0.00 0.00 0.00 26.32 12.57 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 - 10.45 51.08 1955 0.00 0.00 0.00 0.00 0.00 0.00 26.39 12.57 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 - 10.45 51.08 1956 0.00 0.00 0.00 0.00 0.00 0.00 26.47 12.57 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 - 10.45 51.08 1957 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 - 10.45 51.08 1958 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 - 10.45 51.08 1959 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 - 10.45 51.08 1960 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 - 10.45 51.08 1961 0.00 0.60 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 - 10.45 51.08 1962 0.00 0.68 0.00 3.98 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 - 10.45 51.08 1963 0.00 0.76 4.53 4.82 4.53 4.31 4.53 4.54 0.00 0.00 0.00 0.00 0.00 0.00 4.50 0.00 0.00 0.00 4.54 4.46 4.54 0.00 0.00 - 10.45 51.08 1964 0.00 0.80 5.14 5.50 5.14 4.82 5.04 5.15 0.00 0.00 3.86 0.00 4.09 0.00 5.16 0.00 0.00 0.00 5.22 4.92 5.17 0.00 0.00 - 10.45 51.08 1965 0.00 0.84 5.64 6.12 5.65 5.21 5.54 5.66 0.00 0.00 4.13 3.88 4.35 0.00 5.66 0.00 0.00 0.00 5.74 5.40 5.67 0.00 0.00 - 10.45 51.08 1966 0.00 0.85 6.09 6.68 6.11 5.53 6.00 6.13 0.00 0.00 4.27 3.99 4.51 0.00 6.12 0.00 0.00 0.00 6.21 5.94 6.14 0.00 0.00 - 10.45 51.08 1967 0.00 0.85 6.42 7.16 6.44 5.74 6.33 6.47 0.00 0.00 4.39 4.06 4.63 0.00 6.45 0.00 0.00 0.00 6.57 6.25 6.49 0.00 0.00 - 10.45 51.08 1968 0.00 0.85 6.68 7.57 6.70 5.87 6.59 6.74 0.00 0.00 4.39 4.06 4.66 0.00 6.70 0.00 0.00 0.00 6.84 6.48 6.76 0.00 0.00 - 10.45 51.08 1969 0.00 0.85 6.87 7.89 6.90 5.93 6.78 6.94 0.00 0.00 4.39 4.06 4.66 0.00 6.88 0.00 0.00 0.00 7.06 6.63 6.96 0.00 0.00 - 10.45 51.08 1970 0.00 0.85 7.02 8.19 7.07 5.96 6.95 7.12 0.00 0.00 4.39 4.06 4.66 0.00 7.03 0.00 0.00 0.00 7.24 6.74 7.14 0.00 0.00 - 10.45 51.08 1971 0.00 0.85 7.24 8.38 7.16 5.96 7.03 7.20 0.00 0.00 4.39 4.06 4.66 0.00 7.09 0.00 0.00 0.00 7.33 6.77 7.22 0.00 0.00 - 10.45 51.08 1972 0.00 0.85 7.40 8.72 7.32 5.98 7.20 7.38 0.00 0.00 4.39 4.06 4.67 0.00 7.24 0.00 0.00 0.00 7.52 6.90 7.40 0.00 0.00 - 10.45 51.08 1973 0.00 0.85 7.45 8.88 7.37 5.97 7.24 7.43 0.00 0.00 4.39 4.06 4.67 0.00 7.27 0.00 0.00 0.00 7.57 6.91 7.44 0.00 0.00 - 10.45 51.08 1974 0.00 0.85 7.61 9.23 7.54 6.00 7.43 7.61 0.00 0.00 4.39 4.06 4.67 0.00 7.41 0.00 0.00 0.00 7.77 7.06 7.62 0.00 0.00 - 10.45 51.08 1975 0.00 0.85 7.73 9.51 7.67 6.11 7.56 7.75 0.00 0.00 4.39 4.06 4.67 0.00 7.51 0.00 0.00 0.00 7.91 7.37 7.73 0.00 0.00 - 10.45 51.08 1976 0.00 0.00 7.73 9.61 7.67 6.11 7.56 7.75 0.00 0.00 4.39 0.00 4.67 0.00 7.51 0.00 0.00 0.00 7.91 7.37 7.73 0.00 0.00 - 10.45 51.08 1977 0.00 0.00 7.86 9.95 8.00 6.12 7.73 7.90 0.00 0.00 4.39 0.00 4.67 0.00 7.63 0.00 0.00 0.00 8.08 7.50 7.88 0.00 0.00 - 10.45 51.08 1978 0.00 0.00 7.97 10.59 8.14 6.12 7.87 8.04 0.00 0.00 4.39 0.00 4.67 0.00 7.73 0.00 0.00 0.00 8.22 7.60 8.02 0.00 0.00 - 10.45 51.08 1979 0.00 0.00 8.05 10.89 8.24 6.12 8.00 8.34 0.00 0.00 4.39 0.00 4.67 0.00 7.80 0.00 0.00 0.00 8.34 7.67 8.11 0.00 0.00 - 10.45 51.08 1980 0.00 0.00 8.10 11.13 8.31 6.12 8.08 8.41 0.00 0.00 4.39 0.00 4.67 0.00 7.84 0.00 0.00 0.00 8.41 7.70 8.19 0.00 0.00 - 10.45 51.08 1981 0.00 0.00 8.19 11.49 8.43 6.12 8.23 8.55 0.00 0.00 0.00 0.00 4.67 0.00 7.92 0.00 0.00 0.00 8.55 7.79 8.31 0.00 0.00 - 10.45 51.08 1982 0.00 0.00 8.19 11.58 8.43 6.12 8.77 8.55 0.00 0.00 0.00 0.00 4.67 0.00 7.92 0.00 0.00 0.00 8.55 7.79 8.31 0.00 0.00 - 10.45 51.08 1983 0.00 0.00 8.24 11.85 8.52 6.12 8.91 8.65 0.00 0.00 0.00 0.00 4.67 0.00 7.96 0.00 0.00 0.00 8.65 7.83 8.65 0.00 0.00 - 10.45 51.08 1984 0.00 0.00 8.29 12.14 8.61 6.12 9.04 8.74 0.00 0.00 0.00 0.00 4.67 0.00 8.01 0.00 0.00 0.00 8.74 7.88 8.74 0.00 0.00 - 10.45 51.08 1985 0.00 0.00 8.34 12.41 8.69 6.12 9.17 8.83 0.00 0.00 0.00 0.00 4.67 0.00 8.04 0.00 0.00 0.00 8.83 7.91 8.83 0.00 0.00 - 10.45 51.08 1986 0.00 0.00 8.41 12.74 8.80 6.12 9.35 8.95 0.00 0.00 0.00 0.00 4.67 0.00 8.09 0.00 0.00 0.00 8.95 7.97 8.95 0.00 0.00 - 10.45 51.08 1987 0.00 0.00 8.46 13.07 8.90 6.12 9.50 9.06 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 9.06 8.01 9.06 0.00 0.00 - 10.45 51.08 1988 0.00 0.00 8.47 13.29 8.93 6.12 9.57 9.10 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 9.10 8.01 9.10 0.00 0.00 - 10.45 51.08 1989 0.00 0.00 8.48 13.49 8.95 0.00 9.62 9.13 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 9.13 8.01 9.13 0.00 0.00 - 10.45 51.08 1990 0.00 0.00 8.52 13.79 9.02 0.00 9.75 9.22 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 9.22 8.04 9.22 0.00 0.00 - 10.45 51.08 1991 0.00 0.00 8.52 13.97 9.02 0.00 9.76 9.22 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 9.22 8.04 9.22 0.00 0.00 - 10.45 51.08 1992 0.00 0.00 8.54 14.21 9.06 0.00 9.87 9.27 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 9.27 8.05 9.27 0.00 0.00 - 10.45 51.08 1993 0.00 0.00 8.58 14.54 9.16 0.00 10.05 9.38 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 9.38 8.10 9.38 0.00 0.00 - 10.45 51.08 1994 0.00 0.00 8.63 14.89 9.24 0.00 10.22 9.48 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 9.48 8.14 9.48 0.00 0.00 - 10.45 51.08 1995 0.00 0.00 8.66 15.21 9.31 0.00 10.36 9.56 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 9.56 8.16 9.56 0.00 0.00 - 10.45 51.08 1996 0.00 0.00 8.68 15.48 9.36 0.00 10.47 9.62 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 9.62 8.18 9.62 0.00 0.00 - 10.45 51.08 1997 0.00 0.00 8.69 15.78 9.40 0.00 10.58 9.67 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 9.67 8.19 9.67 0.00 0.00 - 10.45 51.08 1998 0.00 0.00 8.71 16.04 9.44 0.00 10.66 9.71 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 9.71 8.19 9.71 0.00 0.00 - 10.45 51.08 1999 0.00 0.00 8.73 16.34 9.48 0.00 10.78 9.77 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 9.77 8.21 9.77 0.00 0.00 - 10.45 51.08 2000 0.00 0.00 8.73 16.58 9.50 0.00 10.86 9.80 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 9.80 8.22 9.80 0.00 0.00 - 10.45 51.08 2001 0.00 0.00 8.74 16.83 9.53 0.00 10.94 9.83 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 9.83 8.22 9.83 0.00 0.00 - 10.45 51.08 2002 0.00 0.00 8.75 17.07 9.55 0.00 11.01 9.86 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 9.86 8.22 9.86 0.00 0.00 - 10.45 51.08 2003 0.00 0.00 8.75 17.24 9.55 0.00 11.04 9.86 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 9.86 8.22 9.86 0.00 0.00 - 10.45 51.08 2004 0.00 0.00 8.75 17.46 9.56 0.00 11.10 9.88 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 9.88 8.22 9.88 0.00 0.00 - 10.45 51.08 2005 0.00 0.00 8.75 17.71 9.59 0.00 11.18 9.91 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 9.91 8.23 9.91 0.00 0.00 - 10.45 51.08 2006 0.00 0.00 0.00 17.94 9.61 0.00 11.27 9.94 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 9.94 8.23 9.94 0.00 0.00 - 10.45 51.08 2007 0.00 0.00 0.00 18.20 9.63 0.00 11.35 9.98 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 9.98 8.23 9.98 0.00 0.00 - 10.45 51.08 2008 0.00 0.00 0.00 18.39 9.63 0.00 11.39 9.98 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 9.98 8.23 9.98 0.00 0.00 - 10.45 51.08 2009 0.00 0.00 0.00 18.63 9.66 0.00 11.49 10.02 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 10.02 8.24 10.02 0.00 0.00 - 10.45 51.08 2010 0.00 0.00 0.00 18.87 9.68 0.00 11.57 10.05 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 10.05 8.25 10.05 0.00 0.00 - 10.45 51.08 2011 0.00 0.00 0.00 19.11 9.71 0.00 11.67 10.08 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 10.08 8.25 10.08 0.00 0.00 - 10.45 51.08 2012 0.00 0.00 0.00 19.34 9.72 0.00 11.73 10.10 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 10.10 8.26 10.10 0.00 0.00 diff --git a/rLPJGUESS/inst/extdata/outputsForTests/run_patcharea/outDirectory/vmaxnlim.out b/rLPJGUESS/inst/extdata/outputsForTests/run_patcharea/outDirectory/vmaxnlim.out deleted file mode 100644 index dffc658..0000000 --- a/rLPJGUESS/inst/extdata/outputsForTests/run_patcharea/outDirectory/vmaxnlim.out +++ /dev/null @@ -1,63 +0,0 @@ - Lon Lat YearAbi_alb BESBet_penBet_pubCar_betCor_aveFag_sylFra_excJun_oxy MRSPic_abiPic_sitPin_sylPin_halPop_treQue_cocQue_ileQue_pubQue_robTil_corUlm_gla C3_gr C4_gr Total - 10.45 51.08 1951 0.00 0.00 0.00 0.00 0.00 0.00 1.00 1.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.00 - 10.45 51.08 1952 0.00 0.00 0.00 0.00 0.00 0.00 1.00 1.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.00 - 10.45 51.08 1953 0.00 0.00 0.00 0.00 0.00 0.00 1.00 1.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.00 - 10.45 51.08 1954 0.00 0.00 0.00 0.00 0.00 0.00 1.00 1.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.00 - 10.45 51.08 1955 0.00 0.00 0.00 0.00 0.00 0.00 1.00 1.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.00 - 10.45 51.08 1956 0.00 0.00 0.00 0.00 0.00 0.00 1.00 1.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.00 - 10.45 51.08 1957 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 - 10.45 51.08 1958 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 - 10.45 51.08 1959 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 - 10.45 51.08 1960 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 - 10.45 51.08 1961 0.00 1.00 1.00 1.00 1.00 1.00 1.00 1.00 0.00 0.00 1.00 1.00 1.00 0.00 1.00 0.00 0.00 0.00 1.00 1.00 1.00 1.00 0.00 1.00 - 10.45 51.08 1962 0.00 1.00 1.00 1.00 1.00 1.00 1.00 1.00 0.00 0.00 1.00 1.00 1.00 0.00 1.00 0.00 0.00 0.00 1.00 1.00 1.00 1.00 0.00 1.00 - 10.45 51.08 1963 0.00 1.00 1.00 1.00 1.00 1.00 1.00 1.00 0.00 0.00 1.00 1.00 1.00 0.00 1.00 0.00 0.00 0.00 1.00 1.00 1.00 1.00 0.00 1.00 - 10.45 51.08 1964 0.00 1.00 1.00 1.00 1.00 1.00 1.00 1.00 0.00 0.00 1.00 1.00 1.00 0.00 1.00 0.00 0.00 0.00 1.00 1.00 1.00 1.00 0.00 1.00 - 10.45 51.08 1965 0.00 1.00 1.00 1.00 1.00 1.00 1.00 1.00 0.00 0.00 1.00 1.00 1.00 0.00 1.00 0.00 0.00 0.00 1.00 1.00 1.00 0.00 0.00 1.00 - 10.45 51.08 1966 0.00 1.00 1.00 1.00 1.00 1.00 1.00 1.00 0.00 0.00 1.00 1.00 1.00 0.00 1.00 0.00 0.00 0.00 1.00 1.00 1.00 0.00 0.00 1.00 - 10.45 51.08 1967 0.00 1.00 1.00 1.00 1.00 1.00 1.00 1.00 0.00 0.00 1.00 1.00 1.00 0.00 1.00 0.00 0.00 0.00 1.00 1.00 1.00 0.00 0.00 1.00 - 10.45 51.08 1968 0.00 1.00 1.00 1.00 1.00 1.00 1.00 1.00 0.00 0.00 1.00 1.00 1.00 0.00 1.00 0.00 0.00 0.00 1.00 1.00 1.00 0.00 0.00 1.00 - 10.45 51.08 1969 0.00 1.00 1.00 1.00 1.00 1.00 1.00 1.00 0.00 0.00 1.00 1.00 1.00 0.00 1.00 0.00 0.00 0.00 1.00 1.00 1.00 0.00 0.00 1.00 - 10.45 51.08 1970 0.00 1.00 1.00 1.00 1.00 1.00 1.00 1.00 0.00 0.00 1.00 1.00 1.00 0.00 1.00 0.00 0.00 0.00 1.00 1.00 1.00 0.00 0.00 1.00 - 10.45 51.08 1971 0.00 1.00 1.00 1.00 1.00 1.00 1.00 1.00 0.00 0.00 1.00 1.00 1.00 0.00 1.00 0.00 0.00 0.00 1.00 1.00 1.00 0.00 0.00 1.00 - 10.45 51.08 1972 0.00 1.00 1.00 1.00 1.00 1.00 1.00 1.00 0.00 0.00 1.00 1.00 1.00 0.00 1.00 0.00 0.00 0.00 1.00 1.00 1.00 0.00 0.00 1.00 - 10.45 51.08 1973 0.00 1.00 1.00 1.00 1.00 1.00 1.00 1.00 0.00 0.00 1.00 1.00 1.00 0.00 1.00 0.00 0.00 0.00 1.00 1.00 1.00 0.00 0.00 1.00 - 10.45 51.08 1974 0.00 1.00 1.00 1.00 1.00 1.00 1.00 1.00 0.00 0.00 1.00 1.00 1.00 0.00 1.00 0.00 0.00 0.00 1.00 1.00 1.00 0.00 0.00 1.00 - 10.45 51.08 1975 0.00 1.00 1.00 1.00 1.00 1.00 1.00 1.00 0.00 0.00 1.00 1.00 1.00 0.00 1.00 0.00 0.00 0.00 1.00 1.00 1.00 0.00 0.00 1.00 - 10.45 51.08 1976 0.00 0.00 1.00 1.00 1.00 1.00 1.00 1.00 0.00 0.00 1.00 1.00 1.00 0.00 1.00 0.00 0.00 0.00 1.00 1.00 1.00 0.00 0.00 1.00 - 10.45 51.08 1977 0.00 0.00 1.00 1.00 1.00 1.00 1.00 1.00 0.00 0.00 1.00 1.00 1.00 0.00 1.00 0.00 0.00 0.00 1.00 1.00 1.00 0.00 0.00 1.00 - 10.45 51.08 1978 0.00 0.00 1.00 1.00 1.00 1.00 1.00 1.00 0.00 0.00 1.00 1.00 1.00 0.00 1.00 0.00 0.00 0.00 1.00 1.00 1.00 0.00 0.00 1.00 - 10.45 51.08 1979 0.00 0.00 1.00 1.00 1.00 1.00 1.00 1.00 0.00 0.00 1.00 1.00 1.00 0.00 1.00 0.00 0.00 0.00 1.00 1.00 1.00 0.00 0.00 1.00 - 10.45 51.08 1980 0.00 0.00 1.00 1.00 1.00 1.00 1.00 1.00 0.00 0.00 1.00 1.00 1.00 0.00 1.00 0.00 0.00 0.00 1.00 1.00 1.00 0.00 0.00 1.00 - 10.45 51.08 1981 0.00 0.00 1.00 1.00 1.00 1.00 1.00 1.00 0.00 0.00 0.00 1.00 1.00 0.00 1.00 0.00 0.00 0.00 1.00 1.00 1.00 0.00 0.00 1.00 - 10.45 51.08 1982 0.00 0.00 1.00 1.00 1.00 1.00 1.00 1.00 0.00 0.00 0.00 1.00 1.00 0.00 1.00 0.00 0.00 0.00 1.00 1.00 1.00 0.00 0.00 1.00 - 10.45 51.08 1983 0.00 0.00 1.00 1.00 1.00 1.00 1.00 1.00 0.00 0.00 0.00 1.00 1.00 0.00 1.00 0.00 0.00 0.00 1.00 1.00 1.00 0.00 0.00 1.00 - 10.45 51.08 1984 0.00 0.00 1.00 1.00 1.00 1.00 1.00 1.00 0.00 0.00 0.00 1.00 1.00 0.00 1.00 0.00 0.00 0.00 1.00 1.00 1.00 0.00 0.00 1.00 - 10.45 51.08 1985 0.00 0.00 1.00 1.00 1.00 1.00 1.00 1.00 0.00 0.00 0.00 1.00 1.00 0.00 1.00 0.00 0.00 0.00 1.00 1.00 1.00 0.00 0.00 1.00 - 10.45 51.08 1986 0.00 0.00 1.00 1.00 1.00 1.00 1.00 1.00 0.00 0.00 0.00 1.00 1.00 0.00 1.00 0.00 0.00 0.00 1.00 1.00 1.00 0.00 0.00 1.00 - 10.45 51.08 1987 0.00 0.00 1.00 1.00 1.00 1.00 1.00 1.00 0.00 0.00 0.00 1.00 0.00 0.00 0.00 0.00 0.00 0.00 1.00 1.00 1.00 0.00 0.00 1.00 - 10.45 51.08 1988 0.00 0.00 1.00 1.00 1.00 1.00 1.00 1.00 0.00 0.00 0.00 1.00 0.00 0.00 0.00 0.00 0.00 0.00 1.00 1.00 1.00 0.00 0.00 1.00 - 10.45 51.08 1989 0.00 0.00 1.00 1.00 1.00 0.00 1.00 1.00 0.00 0.00 0.00 1.00 0.00 0.00 0.00 0.00 0.00 0.00 1.00 1.00 1.00 0.00 0.00 1.00 - 10.45 51.08 1990 0.00 0.00 1.00 1.00 1.00 0.00 1.00 1.00 0.00 0.00 0.00 1.00 0.00 0.00 0.00 0.00 0.00 0.00 1.00 1.00 1.00 0.00 0.00 1.00 - 10.45 51.08 1991 0.00 0.00 1.00 1.00 1.00 0.00 1.00 1.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.00 1.00 1.00 0.00 0.00 1.00 - 10.45 51.08 1992 0.00 0.00 1.00 1.00 1.00 0.00 1.00 1.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.00 1.00 1.00 0.00 0.00 1.00 - 10.45 51.08 1993 0.00 0.00 1.00 1.00 1.00 0.00 1.00 1.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.00 1.00 1.00 0.00 0.00 1.00 - 10.45 51.08 1994 0.00 0.00 1.00 1.00 1.00 0.00 1.00 1.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.00 1.00 1.00 0.00 0.00 1.00 - 10.45 51.08 1995 0.00 0.00 1.00 1.00 1.00 0.00 1.00 1.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.00 1.00 1.00 0.00 0.00 1.00 - 10.45 51.08 1996 0.00 0.00 1.00 1.00 1.00 0.00 1.00 1.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.00 1.00 1.00 0.00 0.00 1.00 - 10.45 51.08 1997 0.00 0.00 1.00 1.00 1.00 0.00 1.00 1.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.00 1.00 1.00 0.00 0.00 1.00 - 10.45 51.08 1998 0.00 0.00 1.00 1.00 1.00 0.00 1.00 1.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.00 1.00 1.00 0.00 0.00 1.00 - 10.45 51.08 1999 0.00 0.00 1.00 1.00 1.00 0.00 1.00 1.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.00 1.00 1.00 0.00 0.00 1.00 - 10.45 51.08 2000 0.00 0.00 1.00 1.00 1.00 0.00 1.00 1.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.00 1.00 1.00 0.00 0.00 1.00 - 10.45 51.08 2001 0.00 0.00 1.00 1.00 1.00 0.00 1.00 1.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.00 1.00 1.00 0.00 0.00 1.00 - 10.45 51.08 2002 0.00 0.00 1.00 1.00 1.00 0.00 1.00 1.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.00 1.00 1.00 0.00 0.00 1.00 - 10.45 51.08 2003 0.00 0.00 1.00 1.00 1.00 0.00 1.00 1.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.00 1.00 1.00 0.00 0.00 1.00 - 10.45 51.08 2004 0.00 0.00 1.00 1.00 1.00 0.00 1.00 1.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.00 1.00 1.00 0.00 0.00 1.00 - 10.45 51.08 2005 0.00 0.00 1.00 1.00 1.00 0.00 1.00 1.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.00 1.00 1.00 0.00 0.00 1.00 - 10.45 51.08 2006 0.00 0.00 0.00 1.00 1.00 0.00 1.00 1.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.00 1.00 1.00 0.00 0.00 1.00 - 10.45 51.08 2007 0.00 0.00 0.00 1.00 1.00 0.00 1.00 1.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.00 1.00 1.00 0.00 0.00 1.00 - 10.45 51.08 2008 0.00 0.00 0.00 1.00 1.00 0.00 1.00 1.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.00 1.00 1.00 0.00 0.00 1.00 - 10.45 51.08 2009 0.00 0.00 0.00 1.00 1.00 0.00 1.00 1.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.00 1.00 1.00 0.00 0.00 1.00 - 10.45 51.08 2010 0.00 0.00 0.00 1.00 1.00 0.00 1.00 1.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.00 1.00 1.00 0.00 0.00 1.00 - 10.45 51.08 2011 0.00 0.00 0.00 1.00 1.00 0.00 1.00 1.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.00 1.00 1.00 0.00 0.00 1.00 - 10.45 51.08 2012 0.00 0.00 0.00 1.00 1.00 0.00 1.00 1.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.00 1.00 1.00 0.00 0.00 1.00 diff --git a/rLPJGUESS/inst/extdata/outputsForTests/standard/europe.ins b/rLPJGUESS/inst/extdata/outputsForTests/standard/europe.ins deleted file mode 100644 index 65641b8..0000000 --- a/rLPJGUESS/inst/extdata/outputsForTests/standard/europe.ins +++ /dev/null @@ -1,1103 +0,0 @@ -!/////////////////////////////////////////////////////////////////////////////////////// -!// LPJ-GUESS INSTRUCTION SCRIPT FOR COHORT/INDIVIDUAL MODE -!// European Species -!// -!// LPJ-GUESS 3.0 -!// -!// Parameter differences with Thomas Hickler's paper: -!// -!// Hickler, T., Vohland, K., Feehan, J., Miller, P., Fronzek, S., Giesecke, T., Kuehn, I., Carter, T., Smith, B. & -!// Sykes, M. Projecting tree species-based climate-driven changes in European potential natural vegetation -!// with a generalized dynamic vegetation model. In press, Global Ecology & Biogeography. -!// -!// are commented with ! THdiff -!/////////////////////////////////////////////////////////////////////////////////////// - - -!/////////////////////////////////////////////////////////////////////////////////////// -! Output files -! - -! outputdirectory is mandatory. Should be "./" for parallel runs. -outputdirectory "/home/ramiro/Github/TestCode/LPJrunTest/runDirectory/outDirectory/" - -! Prefined yearly output -! These files may be outcommented if their output is not required. -file_cmass "cmass.out" -file_anpp "anpp.out" -file_agpp "agpp.out" -file_fpc "fpc.out" -file_aaet "aaet.out" -file_lai "lai.out" -file_cflux "cflux.out" -file_dens "dens.out" -file_runoff "runoff.out" -file_cpool "cpool.out" -file_clitter "clitter.out" -file_firert "firert.out" -file_aiso "aiso.out" -file_amon "amon.out" -file_speciesheights "speciesheight.out" - -file_nmass "nmass.out" -file_cton_leaf "cton_leaf.out" -file_ngases "ngases.out" -file_nsources "nsources.out" -file_npool "npool.out" -file_nlitter "nlitter.out" -file_nuptake "nuptake.out" -file_nflux "nflux.out" -file_vmaxnlim "vmaxnlim.out" - -! Monthly outputs -file_mnpp "mnpp.out" -file_mlai "mlai.out" -file_mrh "mrh.out" -file_mgpp "mgpp.out" -file_mra "mra.out" -file_mnee "mnee.out" -file_maet "maet.out" -file_mpet "mpet.out" -file_mevap "mevap.out" -file_mintercep "mintercep.out" -file_mrunoff "mrunoff.out" -file_mwcont_upper "mwcont_upper.out" -file_mwcont_lower "mwcont_lower.out" -file_miso "miso.out" -file_mmon "mmon.out" - -!/////////////////////////////////////////////////////////////////////////////////////// - - - -!/////////////////////////////////////////////////////////////////////////////////////// -!// RUN PARAMETERS AND OPTIONS -! - -! Settings recognised by Plib -! Run GUESS with -help option for list of keywords and their meanings - -title 'LPJ-GUESS cohort mode - European species' - -vegmode "cohort" ! "cohort", "individual" or "population" -nyear_spinup 500 ! number of years to spin up the simulation for -ifcalcsla 1 ! whether ctonto calculate SLA from leaf longevity - ! (PFT-specific value can be specified in this file instead) -ifcalccton 1 ! whether to calculate leaf C:N min from leaf longevity - ! (PFT-specific value can be specified in this file instead) -iffire 1 ! whether to implement fire (1) or not (0) -npatch 1 ! number of replicate patches to simulate -patcharea 1000 ! patch area (m2) -estinterval 1 ! years between establishment events in cohort mode -ifdisturb 1 ! whether generic patch-destroying disturbances enabled -distinterval 100 ! average return time for generic patch-destroying disturbances - ! Hickler et al. (2011) used 200 -ifbgestab 1 ! whether background establishment enabled -ifsme 1 ! whether spatial mass effect enabled -ifstochestab 1 ! whether establishment stochastic -ifstochmort 1 ! whether mortality stochastic -ifcdebt 1 ! whether to allow vegetation C storage (1) or not (0) -wateruptake "rootdist" ! "wcont", "rootdist", "smart" or "speciesspecific", - ! see documentation for water_uptake() - -!/////////////////////////////////////////////////////////////////////////////// -! PROCESS SETTINGS SPECIFIC TO NITROGEN -!/////////////////////////////////////////////////////////////////////////////// - -ifcentury 1 ! whether to use CENTURY SOM dynamics (mandatory for N cycling) -ifnlim 0 ! whether plant growth limited by available N -freenyears 100 ! number of years to spin up without N limitation (needed to build up a N pool) -nfix_a 0.102 ! first term in N fixation eqn (Conservative 0.102, Central 0.234, Upper 0.367) -nfix_b 0.524 ! second term in N fixation eqn (Conservative 0.524, Central -0.172, Upper -0.754) -nrelocfrac 0.5 ! fraction of N retranslocated prior to leaf and root shedding - - -!/////////////////////////////////////////////////////////////////////////////// -! SERIALIZATION SETTINGS -!/////////////////////////////////////////////////////////////////////////////// -state_year 500 ! year to save/start state file (no setting = after spinup) -restart 0 ! wheter to start from a state file -save_state 0 ! wheter to save a state file -state_path "" ! directory to put state files in - - -ifsmoothgreffmort 1 ! whether to vary mort_greff smoothly with growth efficiency (1) - ! or to use the standard step-function (0) - ! greff_min values below calibrated for the smooth (1) option -ifdroughtlimitedestab 1 ! whether establishment is limited by growing season drought -ifrainonwetdaysonly 1 ! whether to rain on wet days only (1), or to rain a bit every day (0) -ifbvoc 0 ! whether to include BVOC calculations (1) or not (0) - -!!!!!!!!!!!! landcover parameters !!!!!!!!!!!!!! - -run_landcover 0 ! whether to use (and change) landcover fractions (1) or not (0) - -run_urban 0 ! whether to simulate barren land (1) or not (0) -run_crop 1 ! whether to simulate crop vegetation (1) or not (0) -run_forest 0 ! whether to simulate managed forest (1) or not (0) -run_pasture 0 ! whether to simulate pasture (1) or not (0) -run_natural 0 ! whether to simulate natural vegetation (1) or not (0) -run_peatland 1 ! whether to simulate peatland (1) or not (0) - -lcfrac_fixed 0 ! use landcover fractions (%) below (1) or read from input file (0) -lc_fixed_urban 0 ! URBAN -lc_fixed_cropland 50 ! CROPLAND -lc_fixed_pasture 0 ! PASTURE -lc_fixed_forest 0 ! FOREST -lc_fixed_natural 25 ! NATURAL -lc_fixed_peatland 25 ! PEATLAND -equal_landcover_area 0 ! divide gridcell into equal active landcover fractions - -!/////////////////////////////////////////////////////////////////////////////////////// - - -!/////////////////////////////////////////////////////////////////////////////////////// -!// PARAMETERS FOR PFTS -!// Run GUESS with -help option for list of keywords and their meanings - -group "common" ( - - ! Parameters common to all PFTs - - lambda_max 0.8 ! 0.8 - emax 5 ! 5 - reprfrac 0.1 ! 0.1 - wscal_min 0.35 ! 0.35 - drought_tolerance 1e-04 ! 0.0001 - ! default value - ensures that this has little effect even if - ! ifdroughtlimitedestab is turned on - landcover "natural" - turnover_harv_prod 1 ! 1 -) - - -group "tree" ( - - ! Parameters common to all trees - - common - lifeform "tree" - pathway "c3" - rootdist 0.6 0.4 - crownarea_max 40 ! 40 - turnover_root 0.7 ! 0.7 - ltor_max 1 ! 1 - k_allom2 40 ! 40 - k_allom3 0.67 ! 0.67 - k_rp 1.6 ! 1.6 - wooddens 200 ! 200 - cton_root 29 ! 29 - cton_sap 330 ! 330 - nuptoroot 0.0028 ! 0.0028 - km_volume 1.477e-06 ! 0.000001477 - kest_repr 200 ! 200 - kest_bg 0.1 ! 0.1 - kest_pres 1 ! 1 - litterme 0.3 ! 0.3 - harv_eff 0.7 ! 0.7 - res_outtake 0.75 ! 0.75 - harvest_slow_frac 0.33 ! 0.33 - turnover_harv_prod 0.04 ! 0.04 -) - -group "shrub" ( - common - lifeform "tree" - leafphysiognomy "broadleaf" - pathway "c3" - rootdist 0.6 0.4 - crownarea_max 10 ! 10 - turnover_root 0.7 ! 0.7 - ltor_max 1 ! 1 - k_allom1 100 ! 100 - k_allom2 5 ! 5 - k_allom3 0.67 ! 0.67 - k_rp 1.6 ! 1.6 - wooddens 250 ! 250 - cton_root 29 ! 29 - cton_sap 330 ! 330 - nuptoroot 0.0028 ! 0.0028 - km_volume 1.477e-06 ! 0.000001477 - fnstorage 0.3 ! 0.3 - kest_repr 200 ! 200 - kest_bg 0.1 ! 0.1 - kest_pres 1 ! 1 - litterme 0.3 ! 0.3 - longevity 100 ! 100 -) - -group "needle_leaved" ( - leafphysiognomy "needleleaf" - k_allom1 150 ! 150 - k_latosa 4000 ! 4000 - ga 0.14 ! 0.140 -) - -group "broad_leaved" ( - leafphysiognomy "broadleaf" - k_allom1 250 ! 250 - k_latosa 5000 ! 5000 - leaflong 0.5 ! 0.5 - turnover_leaf 1 ! 1 - ga 0.04 ! 0.040 -) - -group "grass" ( - - ! Parameters common to all grasses - - common - lifeform "grass" - leafphysiognomy "broadleaf" - ltor_max 0.5 ! 0.5 - cton_root 29 ! 29 - nuptoroot 0.00551 ! 0.00551 - km_volume 1.876e-06 ! 0.000001876 - fnstorage 0.3 ! 0.3 - respcoeff 1 ! 1.0 - litterme 0.2 ! 0.2 - ga 0.03 ! 0.030 -) - - -! greff_min values below calibrated for the smooth (ifsmoothgreffmort 1) option -! Many THdiff values here -group "shade_tolerant" ( - est_max 0.05 ! 0.05 - parff_min 350000 ! 350000 - alphar 3 ! 3.0 - greff_min 0.04 ! 0.04 - turnover_sap 0.05 ! 0.05 -) - - -! So far only trial values; not in global version -group "intermediate_shade_tolerant" ( - est_max 0.15 ! 0.15 - parff_min 2e+06 ! 2000000 - alphar 7 ! 7.0 - greff_min 0.06 ! 0.06 - turnover_sap 0.075 ! 0.075 -) - - -! From global version; values from orginal European version after "!" -group "shade_intolerant" ( - est_max 0.2 ! 0.2 - parff_min 2500000 ! 2500000 - alphar 10 ! 10.0 - greff_min 0.08 ! 0.08 - turnover_sap 0.1 ! 0.1 -) - - -group "boreal_tree" ( - respcoeff 1 ! 1.0 - pstemp_min -4 ! -4 - pstemp_low 10 ! 10 - pstemp_high 25 ! 25 - pstemp_max 38 ! 38 -) - -group "temperate_tree" ( - respcoeff 1 ! 1.0 - pstemp_min -2 ! -2 - pstemp_low 15 ! 15 - pstemp_high 25 ! 25 - pstemp_max 38 ! 38 -) - - -!/////////////////////////////////////////////////////////////////////////////////////// -! PFTs and species follow -! -! THdiff notes: -! 1. Thomas Hickler didn't give the values used for the tcmax_est and twmin_est parameters -! 2. rootdist is different for (z1 in brackets): Abi_alb (0.8), Bet_pen (0.8), Bet_pub (0.8), Car_bet (0.7), -! Cor_ave (0.7), Fag_syl (0.8), Fra_exc (0.8) - - -pft "Abi_alb" ( - - include 1 ! 1 - tree - shade_tolerant - temperate_tree - needle_leaved - phenology "evergreen" - !sla 9.3 ! 9.3 - gmin 0.3 ! 0.3 - fnstorage 0.05 ! 0.05 - leaflong 3 ! 3 - turnover_leaf 0.33 ! 0.33 - phengdd5ramp 0 ! 0 - tcmin_surv -2 ! -2 - tcmin_est -2 ! -2 - tcmax_est 2 ! 2 - twmin_est 6 ! 6 - gdd5min_est 1600 ! 1600 - k_chilla 0 ! 0 - k_chillb 100 ! 100 - k_chillk 0.05 ! 0.05 - fireresist 0.1 ! 0.1 - intc 0.06 ! 0.06 - longevity 350 ! 350 - drought_tolerance 0.35 ! 0.35 - eps_iso 0.05 ! 0.05 - seas_iso 0 ! 0 - eps_mon 1.8 ! 1.8 - storfrac_mon 0.5 ! 0.5 -) - - -pft "BES" ( - - ! boreal evergreen shrub - - include 1 ! 1 - shrub - boreal_tree - shade_intolerant - rootdist 0.8 0.2 - phenology "evergreen" - crownarea_max 3 ! 3 - k_allom1 20 ! 20 - k_allom2 5 ! 5 - k_latosa 500 ! 500 - !sla 9.3 ! 9.3 - gmin 0.3 ! 0.3 - leaflong 2 ! 2 - turnover_leaf 0.5 ! 0.5 - turnover_sap 0.05 ! 0.05 - phengdd5ramp 0 ! 0 - tcmin_surv -1000 ! -1000 - tcmin_est -1000 ! -1000 - tcmax_est -1 ! -1.0 - twmin_est -1000 ! -1000 - gdd5min_est 200 ! 200 - longevity 50 ! 50 - k_chilla 0 ! 0 - k_chillb 100 ! 100 - k_chillk 0.05 ! 0.05 - fireresist 0.1 ! 0.1 - intc 0.06 ! 0.06 - drought_tolerance 0.25 ! 0.25 - eps_iso 2 ! 2.0 - seas_iso 0 ! 0 - eps_mon 4 ! 4.0 - storfrac_mon 0.5 ! 0.5 - ga 0.04 ! 0.040 -) - - -pft "Bet_pen" ( - - include 1 ! 1 - tree - shade_intolerant - temperate_tree - broad_leaved - phenology "summergreen" - !sla 24.3 ! 24.3 - gmin 0.5 ! 0.5 - fnstorage 0.15 ! 0.15 - phengdd5ramp 200 ! 200 - tcmin_surv -30 ! -30 - tcmin_est -30 ! -30 - tcmax_est 7 ! 7 - twmin_est 5 ! 5 - gdd5min_est 700 ! 700 - k_chilla 0 ! 0 - k_chillb 350 ! 350 - k_chillk 0.05 ! 0.05 - fireresist 0.1 ! 0.1 - intc 0.02 ! 0.02 - longevity 200 ! 200 - drought_tolerance 0.42 ! 0.42 - eps_iso 0.2 ! 0.2 - seas_iso 1 ! 1 - eps_mon 6 ! 6. - storfrac_mon 0 ! 0. -) - - -pft "Bet_pub" ( - - include 1 ! 1 - tree - shade_intolerant - boreal_tree - broad_leaved - phenology "summergreen" - !sla 24.3 ! 24.3 - gmin 0.5 ! 0.5 - fnstorage 0.15 ! 0.15 - phengdd5ramp 200 ! 200 - tcmin_surv -30 ! -30 - tcmin_est -30 ! -30 - tcmax_est 3 ! 3 - twmin_est 5 ! 5 - gdd5min_est 350 ! 350 - k_chilla 0 ! 0 - k_chillb 350 ! 350 - k_chillk 0.05 ! 0.05 - fireresist 0.1 ! 0.1 - intc 0.02 ! 0.02 - longevity 200 ! 200 - drought_tolerance 0.5 ! 0.5 - eps_iso 0 ! 0. - seas_iso 1 ! 1 - eps_mon 1 ! 1.0 - storfrac_mon 0 ! 0. -) - - -pft "Car_bet" ( - - include 1 ! 1 - tree - intermediate_shade_tolerant - temperate_tree - broad_leaved - phenology "summergreen" - !sla 24.3 ! 24.3 - gmin 0.5 ! 0.5 - fnstorage 0.15 ! 0.15 - phengdd5ramp 200 ! 200 - tcmin_surv -8 ! -8 - tcmin_est -8 ! -8 - tcmax_est 5 ! 5 - twmin_est 5 ! 5 - gdd5min_est 1200 ! 1200 - k_chilla 0 ! 0 - k_chillb 600 ! 600 - k_chillk 0.05 ! 0.05 - fireresist 0.1 ! 0.1 - intc 0.02 ! 0.02 - longevity 350 ! 350 - drought_tolerance 0.33 ! 0.33 - eps_iso 0 ! 0. - seas_iso 1 ! 1 - eps_mon 0.08 ! 0.08 - storfrac_mon 0 ! 0. -) - - -pft "Cor_ave" ( - - include 1 ! 1 - tree - crownarea_max 15 - broad_leaved - intermediate_shade_tolerant - temperate_tree - phenology "summergreen" - crownarea_max 15 ! 15 - k_latosa 4000 ! 4000 - !sla 12 ! 12 - gmin 0.5 ! 0.5 - fnstorage 0.15 ! 0.15 - phengdd5ramp 200 ! 200 - tcmin_surv -11 ! -11 - tcmin_est -11 ! -11 - tcmax_est 7 ! 7 - twmin_est 5 ! 5 - gdd5min_est 800 ! 800 - k_chilla 0 ! 0 - k_chillb 350 ! 350 - k_chillk 0.05 ! 0.05 - fireresist 0.1 ! 0.1 - intc 0.02 ! 0.02 - longevity 100 ! 100 - drought_tolerance 0.3 ! 0.3 - eps_iso 0 ! 0. - seas_iso 1 ! 1 - eps_mon 0 ! 0. - storfrac_mon 0 ! 0. -) - - -pft "Fag_syl" ( - - include 1 ! 1 - tree - shade_tolerant - temperate_tree - broad_leaved - phenology "summergreen" - !sla 24.3 ! 24.3 - gmin 0.5 ! 0.5 - fnstorage 0.15 ! 0.15 - phengdd5ramp 200 ! 200 - tcmin_surv -4 ! -4.0 - tcmin_est -3.5 ! -3.5 - tcmax_est 6 ! 6 - twmin_est 5 ! 5 - gdd5min_est 1500 ! 1500 - k_chilla 0 ! 0 - k_chillb 600 ! 600 - k_chillk 0.05 ! 0.05 - fireresist 0.1 ! 0.1 - intc 0.02 ! 0.02 - longevity 500 ! 500 - drought_tolerance 0.3 ! 0.3 - eps_iso 0 ! 0. - seas_iso 1 ! 1 - eps_mon 10 ! 10. - storfrac_mon 0 ! 0. -) - - -pft "Fra_exc" ( - - include 1 ! 1 - tree - intermediate_shade_tolerant - temperate_tree - broad_leaved - phenology "summergreen" - !sla 24.3 ! 24.3 - gmin 0.5 ! 0.5 - fnstorage 0.15 ! 0.15 - phengdd5ramp 200 ! 200 - tcmin_surv -16 ! -16 - tcmin_est -16 ! -16 - tcmax_est 6 ! 6 - twmin_est 5 ! 5 - gdd5min_est 1100 ! 1100 - k_chilla 0 ! 0 - k_chillb 100 ! 100 - k_chillk 0.05 ! 0.05 - fireresist 0.1 ! 0.1 - intc 0.02 ! 0.02 - longevity 350 ! 350 - drought_tolerance 0.4 ! 0.4 - eps_iso 0 ! 0. - seas_iso 1 ! 1 - eps_mon 0 ! 0. - storfrac_mon 0 ! 0. -) - - -pft "Jun_oxy" ( - - ! Thomas Hickler's values - - include 1 ! 1 - tree ! THdiff: - shrub - shade_intolerant - temperate_tree - needle_leaved - rootdist 0.5 0.5 - phenology "evergreen" - k_latosa 1500 ! 1500 - crownarea_max 10 ! 10 - !sla 10 ! 10 - gmin 0.5 ! 0.5 - fnstorage 0.05 ! 0.05 - leaflong 1.5 ! 1.5 - turnover_leaf 0.6667 ! 0.6667 - phengdd5ramp 0 ! 0 - tcmin_surv 0 ! 0 - tcmin_est 1 ! 1 - tcmax_est 1000 ! 1000 - twmin_est -1000 ! -1000 - gdd5min_est 2200 ! 2200 - k_chilla 0 ! 0 - k_chillb 100 ! 100 - k_chillk 0.05 ! 0.05 - fireresist 0.4 ! 0.4 - intc 0.02 ! 0.02 - longevity 200 ! 200 - drought_tolerance 0.01 ! 0.01 - eps_iso 0 ! 0. - seas_iso 0 ! 0 - eps_mon 2 ! 2.0 - storfrac_mon 0.5 ! 0.5 -) - - -pft "MRS" ( - - ! Thomas Hickler's values - ! Mediterranean raingreen low shrub: - ! Cistus, Rosmarinus, Genista, Lavandula, Erica - - include 1 ! 1 - shrub ! THdiff: - has k_allom1 as 250 - shade_intolerant - temperate_tree - rootdist 0.9 0.1 - phenology "raingreen" - k_latosa 1500 ! 1500 - !sla 10 ! 10 - gmin 0.5 ! 0.5 - leaflong 0.5 ! 0.5 - turnover_leaf 1 ! 1 - phengdd5ramp 0 ! 0 - tcmin_surv 0 ! 0 - tcmin_est 1 ! 1 - tcmax_est 1000 ! 1000 - twmin_est -1000 ! -1000 - gdd5min_est 2200 ! 2200 - k_chilla 0 ! 0 - k_chillb 100 ! 100 - k_chillk 0.05 ! 0.05 - fireresist 0.3 ! 0.3 - intc 0.02 ! 0.02 - longevity 100 ! 100 - drought_tolerance 0.01 ! 0.01 - eps_iso 2 ! 2.0 - seas_iso 0 ! 0 - eps_mon 4 ! 4.0 - storfrac_mon 0.5 ! 0.5 - ga 0.04 ! 0.040 -) - - -pft "Pic_abi" ( - - include 1 ! 1 - tree - shade_tolerant - boreal_tree - needle_leaved - rootdist 0.8 0.2 - phenology "evergreen" - !sla 9.3 ! 9.3 - gmin 0.3 ! 0.3 - fnstorage 0.05 ! 0.05 - leaflong 3 ! 3 - turnover_leaf 0.33 ! 0.33 - phengdd5ramp 0 ! 0 - tcmin_surv -30 ! -30 - tcmin_est -30 ! -30 - tcmax_est -1.5 ! -1.5 - twmin_est 5 ! 5 - gdd5min_est 600 ! 600 - k_chilla 0 ! 0 - k_chillb 100 ! 100 - k_chillk 0.05 ! 0.05 - fireresist 0.1 ! 0.1 - intc 0.06 ! 0.06 - longevity 500 ! 500 - drought_tolerance 0.43 ! 0.43 - eps_iso 0.5 ! 0.5 - seas_iso 0 ! 0 - eps_mon 6 ! 6.0 - storfrac_mon 0.5 ! 0.5 -) - - -pft "Pic_sit" ( - - ! Bjarki's values - - include 1 ! 1 - tree - intermediate_shade_tolerant ! Savill's silviculture book - boreal_tree - needle_leaved - rootdist 0.8 0.2 ! ThomasH - phenology "evergreen" - k_latosa 4500 ! 4500 - !sla 9.3 ! 9.3 - gmin 0.3 ! 0.3 - fnstorage 0.05 ! 0.05 - leaflong 4 ! 4 - turnover_leaf 0.25 ! 0.25 - phengdd5ramp 0 ! 0 - tcmin_surv -18 ! -18 - tcmin_est -17 ! -17 - tcmax_est 5.5 ! 5.5 - twmin_est -1000 ! -1000 - gdd5min_est 450 ! 450 - k_chilla 0 ! 0 - k_chillb 100 ! 100 - k_chillk 0.05 ! 0.05 - fireresist 0.1 ! 0.1 - intc 0.06 ! 0.06 - longevity 700 ! 700 - drought_tolerance 0.5 ! 0.5 - eps_iso 0 ! 0. - seas_iso 0 ! 0 - eps_mon 0 ! 0. - storfrac_mon 0.5 ! 0.5 - - ! wooddens 200 - Should be less dens than P. abies (Savill) - ! turnover_sap 0.065 ! Bjarki 30% + abies! -) - - - -pft "Pin_syl" ( - - include 1 ! 1 - tree - intermediate_shade_tolerant - boreal_tree - needle_leaved - phenology "evergreen" - k_latosa 3000 ! 3000 - !sla 9.3 ! 9.3 - gmin 0.3 ! 0.3 - fnstorage 0.05 ! 0.05 - leaflong 2 ! 2 - turnover_leaf 0.5 ! 0.5 - phengdd5ramp 0 ! 0 - tcmin_surv -30 ! -30 - tcmin_est -30 ! -30 - tcmax_est -1 ! -1.0 - twmin_est 5 ! 5 - gdd5min_est 500 ! 500 - k_chilla 0 ! 0 - k_chillb 100 ! 100 - k_chillk 0.05 ! 0.05 - fireresist 0.2 ! 0.2 - intc 0.06 ! 0.06 - longevity 350 ! 350 - drought_tolerance 0.25 ! 0.25 - eps_iso 0 ! 0. - seas_iso 0 ! 0 - eps_mon 4 ! 4.0 - storfrac_mon 0.5 ! 0.5 -) - - -pft "Pin_hal" ( - - ! Thomas Hickler's values - - include 1 ! 1 - tree - shade_intolerant - temperate_tree - needle_leaved - phenology "evergreen" - k_latosa 3000 ! 3000 - !sla 9.3 ! 9.3 - gmin 0.3 ! 0.3 - fnstorage 0.05 ! 0.05 - leaflong 2 ! 2 - turnover_leaf 0.5 ! 0.5 - phengdd5ramp 0 ! 0 - tcmin_surv 3 ! 3 - tcmin_est 3 ! 3 - tcmax_est 9 ! 9 - twmin_est 21 ! 21 - gdd5min_est 3000 ! 3000 - k_chilla 0 ! 0 - k_chillb 100 ! 100 - k_chillk 0.05 ! 0.05 - fireresist 0.2 ! 0.2 - intc 0.06 ! 0.06 - longevity 350 ! 350 - drought_tolerance 0.05 ! 0.05 - eps_iso 0 ! 0. - seas_iso 0 ! 0 - eps_mon 10 ! 10.0 - storfrac_mon 0.5 ! 0.5 -) - - -pft "Pop_tre" ( - - ! Not included in Thomas Hickler's paper - - include 1 ! 1 - tree - shade_intolerant - temperate_tree - broad_leaved - rootdist 0.7 0.3 - phenology "summergreen" - !sla 24.3 ! 24.3 - gmin 0.5 ! 0.5 - fnstorage 0.15 ! 0.15 - phengdd5ramp 200 ! 200 - tcmin_surv -31 ! -31 - tcmin_est -30 ! -30 - tcmax_est 6 ! 6 - twmin_est -1000 ! -1000 - gdd5min_est 500 ! 500 - k_chilla 0 ! 0 - k_chillb 350 ! 350 - k_chillk 0.05 ! 0.05 - fireresist 0.2 ! 0.2 - intc 0.02 ! 0.02 - longevity 160 ! 160 - drought_tolerance 0.4 ! 0.4 - eps_iso 20 ! 20. - seas_iso 1 ! 1 - eps_mon 4 ! 4.0 - storfrac_mon 0 ! 0. -) - - -pft "Que_coc" ( - - ! Thomas Hickler's values - - include 1 ! 1 - shrub ! THdiff: - has k_allom1 as 250 - intermediate_shade_tolerant - temperate_tree - rootdist 0.5 0.5 - phenology "evergreen" - k_latosa 2500 ! 2500 - !sla 10 ! 10 - gmin 0.5 ! 0.5 - leaflong 1.5 ! 1.5 - turnover_leaf 0.6667 ! 0.6667 - phengdd5ramp 0 ! 0 - tcmin_surv 0 ! 0 - tcmin_est 0 ! 0 - tcmax_est 11 ! 11 - twmin_est 21 ! 21 - gdd5min_est 2200 ! 2200 - k_chilla 0 ! 0 - k_chillb 100 ! 100 - k_chillk 0.05 ! 0.05 - fireresist 0.3 ! 0.3 - intc 0.02 ! 0.02 - longevity 350 ! 350 - drought_tolerance 0.1 ! 0.1 - eps_iso 0.1 ! 0.1 - seas_iso 0 ! 0 - eps_mon 10 ! 10.0 - storfrac_mon 0 ! 0. - ga 0.04 ! 0.040 -) - - -pft "Que_ile" ( - - include 1 ! 1 - tree - intermediate_shade_tolerant - temperate_tree - broad_leaved - rootdist 0.5 0.5 - phenology "evergreen" - k_latosa 3000 ! 3000 - !sla 9.3 ! 9.3 - gmin 0.5 ! 0.5 - fnstorage 0.05 ! 0.05 - leaflong 2 ! 2 - turnover_leaf 0.5 ! 0.5 - phengdd5ramp 0 ! 0 - tcmin_surv 3 ! 3 - tcmin_est 3 ! 3 - tcmax_est 7 ! 7 - twmin_est 5 ! 5 - gdd5min_est 1800 ! 1800 - k_chilla 0 ! 0 - k_chillb 100 ! 100 - k_chillk 0.05 ! 0.05 - fireresist 0.3 ! 0.3 - intc 0.02 ! 0.02 - longevity 350 ! 350 - drought_tolerance 0.1 ! 0.1 - eps_iso 0.05 ! 0.05 - seas_iso 0 ! 0 - eps_mon 16 ! 16.0 - storfrac_mon 0 ! 0. -) - - -pft "Que_pub" ( - - ! Thomas Hickler's values - - include 1 ! 1 - tree - intermediate_shade_tolerant - temperate_tree - broad_leaved - phenology "summergreen" - !sla 24.3 ! 24.3 - gmin 0.5 ! 0.5 - fnstorage 0.15 ! 0.15 - phengdd5ramp 200 ! 200 - tcmin_surv -6 ! -6 - tcmin_est -5 ! -5 - tcmax_est 6 ! 6 - twmin_est -1000 ! -1000 - gdd5min_est 1900 ! 1900 - k_chilla 0 ! 0 - k_chillb 100 ! 100 - k_chillk 0.05 ! 0.05 - fireresist 0.2 ! 0.2 - intc 0.02 ! 0.02 - longevity 500 ! 500 - drought_tolerance 0.2 ! 0.2 - eps_iso 50 ! 50.0 - seas_iso 1 ! 1 - eps_mon 0 ! 0. - storfrac_mon 0 ! 0. -) - - -pft "Que_rob" ( - - include 1 ! 1 - tree - intermediate_shade_tolerant - temperate_tree - broad_leaved - phenology "summergreen" - !sla 24.3 ! 24.3 - gmin 0.5 ! 0.5 - fnstorage 0.15 ! 0.15 - phengdd5ramp 200 ! 200 - tcmin_surv -10 ! -10 - tcmin_est -9 ! -9 - tcmax_est 6 ! 6 - twmin_est 5 ! 5 - gdd5min_est 1100 ! 1100 - k_chilla 0 ! 0 - k_chillb 100 ! 100 - k_chillk 0.05 ! 0.05 - fireresist 0.2 ! 0.2 - intc 0.02 ! 0.02 - longevity 500 ! 500 - drought_tolerance 0.25 ! 0.25 - eps_iso 40 ! 40.0 - seas_iso 1 ! 1 - eps_mon 0 ! 0. - storfrac_mon 0 ! 0. -) - - -pft "Til_cor" ( - - include 1 ! 1 - tree - intermediate_shade_tolerant - temperate_tree - broad_leaved - rootdist 0.8 0.2 - phenology "summergreen" - !sla 24.3 ! 24.3 - gmin 0.5 ! 0.5 - fnstorage 0.15 ! 0.15 - phengdd5ramp 200 ! 200 - tcmin_surv -12 ! -12 - tcmin_est -11 ! -11 - tcmax_est 5 ! 5 - twmin_est 5 ! 5 - gdd5min_est 1100 ! 1100 - k_chilla 0 ! 0 - k_chillb 600 ! 600 - k_chillk 0.05 ! 0.05 - fireresist 0.1 ! 0.1 - intc 0.02 ! 0.02 - longevity 350 ! 350 - drought_tolerance 0.33 ! 0.33 - eps_iso 0 ! 0. - seas_iso 1 ! 1 - eps_mon 0 ! 0. - storfrac_mon 0 ! 0. -) - - -pft "Ulm_gla" ( - - ! Not included in Thomas Hickler's paper - - include 1 ! 1 - tree - intermediate_shade_tolerant - temperate_tree - broad_leaved - phenology "summergreen" - !sla 24.3 ! 24.3 - gmin 0.5 ! 0.5 - fnstorage 0.15 ! 0.15 - phengdd5ramp 200 ! 200 - tcmin_surv -10.5 ! -10.5 - tcmin_est -9.5 ! -9.5 - tcmax_est 6 ! 6 - twmin_est 5 ! 5 - gdd5min_est 850 ! 850 - k_chilla 0 ! 0 - k_chillb 100 ! 100 - k_chillk 0.05 ! 0.05 - fireresist 0.1 ! 0.1 - intc 0.02 ! 0.02 - longevity 350 ! 350 - drought_tolerance 0.4 ! 0.4 - eps_iso 0 ! 0. - seas_iso 1 ! 1 - eps_mon 0 ! 0. - storfrac_mon 0 ! 0. -) - - -pft "C3_gr" ( - - include 1 ! 1 - grass - pathway "c3" - rootdist 0.9 0.1 - phenology "any" - !sla 32.4 ! 32.4 - gmin 0.5 ! 0.5 - leaflong 0.5 ! 0.5 - turnover_leaf 1 ! 1 - turnover_root 0.7 ! 0.7 - phengdd5ramp 100 ! 100 - pstemp_min -5 ! -5 - pstemp_low 10 ! 10 - pstemp_high 30 ! 30 - pstemp_max 45 ! 45 - tcmin_surv -1000 ! -1000 - tcmin_est -1000 ! -1000 - tcmax_est 1000 ! 1000 - twmin_est -1000 ! -1000 - gdd5min_est 0 ! 0 - parff_min 2e+06 ! 2000000 - fireresist 0.5 ! 0.5 - intc 0.01 ! 0.01 - drought_tolerance 0.01 ! 0.01 - eps_iso 0 ! 0. - seas_iso 1 ! 1 - eps_mon 1 ! 1.0 - storfrac_mon 0.5 ! 0.5 -) - - -pft "C4_gr" ( - - include 1 ! 1 - grass - pathway "c4" - rootdist 0.9 0.1 - phenology "any" - gmin 0.5 ! 0.5 - leaflong 0.5 ! 0.5 - turnover_leaf 1 ! 1 - turnover_root 0.7 ! 0.7 - phengdd5ramp 100 ! 100 - pstemp_min 6 ! 6 - pstemp_low 20 ! 20 - pstemp_high 45 ! 45 - pstemp_max 55 ! 55 - tcmin_surv 15.5 ! 15.5 - tcmin_est 15.5 ! 15.5 - tcmax_est 1000 ! 1000 - twmin_est -1000 ! -1000 - gdd5min_est 0 ! 0 - parff_min 1e+06 ! 1000000 - fireresist 0.5 ! 0.5 - intc 0.01 ! 0.01 - drought_tolerance 0.01 ! 0.01 - eps_iso 0 ! 0. - seas_iso 1 ! 1 - eps_mon 1 ! 1.0 - storfrac_mon 0.5 ! 0.5 -) - - -! Reference: Savill's silviculture book: -! The Silviculture of Trees used in British Forestry, Peter S. Savill diff --git a/rLPJGUESS/inst/extdata/outputsForTests/standard/europe_cf.ins b/rLPJGUESS/inst/extdata/outputsForTests/standard/europe_cf.ins deleted file mode 100644 index b2b4f2f..0000000 --- a/rLPJGUESS/inst/extdata/outputsForTests/standard/europe_cf.ins +++ /dev/null @@ -1,50 +0,0 @@ -! -! Instruction file with European species to be used with the -! CF I/O module. -! -! Make sure to start LPJ-GUESS with -input cf when using this -! instruction file. -! - -import "/home/ramiro/Github/TestCode/LPJrunTest/runDirectory/europe.ins" - -coordinates_precision 2 - -!/////////////////////////////////////////////////////////////////////////////////////// -! Forcing Data & gridlists -! - -param "file_gridlist" (str "/home/ramiro/Github/TestCode/LPJrunTest/runDirectory/gridlist.txt") - -param "file_co2" (str "/home/ramiro/Github/TestCode/LPJrunTest/crudata/co2_1765-2500_RCP3.txt") -param "file_cru" (str "/home/ramiro/Github/TestCode/LPJrunTest/crudata/cru_1901_2006.bin") -param "file_cru_misc" (str "/home/ramiro/Github/TestCode/LPJrunTest/crudata/cru_1901_2006misc.bin") - -! N deposition (blank string to use constant pre-industrial level of 2 kgN/ha/year) -! type of N deposition time series: either "historic" (default), "rcp26", "rcp45","rcp60","rcp85" as ndep_timeseries in cfinput.cpp -! will work with "GlobalNitrogenDeposition.bin" no matter the value of ndep_timeseries, it will anyway get the right input file -! won´t work with any other RCP ndep file, no matter the value of ndep_timeseries - -param "file_ndep" (str "/home/ramiro/Github/TestCode/LPJrunTest/crudata/GlobalNitrogenDeposition.bin") - - -param "file_temp" (str "/home/ramiro/Github/TestCode/LPJrunTest/temp.nc") -param "variable_temp" (str "temp") - -param "file_prec" (str "/home/ramiro/Github/TestCode/LPJrunTest/prec.nc") -param "variable_prec" (str "prec") - -param "file_insol" (str "/home/ramiro/Github/TestCode/LPJrunTest/rad.nc") -param "variable_insol" (str "rad") - -! Wet days can only be used with monthly precipitation - param "file_wetdays" (str "") -! param "variable_wetdays" (str "_variable_wetdays_") - -! Min/max temp is required for BVOC, -! if BVOC is switched off these can be set to "" - param "file_min_temp" (str "") -! param "variable_min_temp" (str "_variable_min_temp_") - - param "file_max_temp" (str "") -! param "variable_max_temp" (str "_variable_max_temp_") diff --git a/rLPJGUESS/inst/extdata/outputsForTests/standard/gridlist.txt b/rLPJGUESS/inst/extdata/outputsForTests/standard/gridlist.txt deleted file mode 100644 index c8ed25d..0000000 --- a/rLPJGUESS/inst/extdata/outputsForTests/standard/gridlist.txt +++ /dev/null @@ -1 +0,0 @@ -0 Erfurt diff --git a/rLPJGUESS/inst/extdata/outputsForTests/standard/guess.log b/rLPJGUESS/inst/extdata/outputsForTests/standard/guess.log deleted file mode 100644 index 575587d..0000000 --- a/rLPJGUESS/inst/extdata/outputsForTests/standard/guess.log +++ /dev/null @@ -1,13 +0,0 @@ -[LPJ-GUESS Thu Jun 21 19:05:39 2018] - - - --------------------------------------------------- -LPJ-GUESS cohort mode - European species --------------------------------------------------- - -Commencing simulation for gridcell at (10.453,51.0792) -Description: Erfurt -Using soil code and Nitrogen deposition for (10.0,51.0) - -Finished diff --git a/rLPJGUESS/inst/extdata/outputsForTests/standard/outDirectory/aaet.out b/rLPJGUESS/inst/extdata/outputsForTests/standard/outDirectory/aaet.out deleted file mode 100644 index 317cb78..0000000 --- a/rLPJGUESS/inst/extdata/outputsForTests/standard/outDirectory/aaet.out +++ /dev/null @@ -1,63 +0,0 @@ - Lon Lat Year Abi_alb BES Bet_pen Bet_pub Car_bet Cor_ave Fag_syl Fra_exc Jun_oxy MRS Pic_abi Pic_sit Pin_syl Pin_hal Pop_tre Que_coc Que_ile Que_pub Que_rob Til_cor Ulm_gla C3_gr C4_gr Total - 10.45 51.08 1951 0.00 0.00 0.00 18.05 3.33 0.00 79.12 18.16 0.00 0.00 1.68 0.00 0.00 0.00 0.00 0.00 0.00 0.00 49.93 1.64 0.00 0.00 0.00 171.89 - 10.45 51.08 1952 0.00 0.00 0.00 18.10 3.35 0.00 79.64 18.25 0.00 0.00 1.79 0.00 0.00 0.00 0.00 0.00 0.00 0.00 50.18 1.66 0.00 0.00 0.00 172.96 - 10.45 51.08 1953 0.00 0.00 0.00 19.63 3.60 0.00 86.66 19.56 0.00 0.00 1.95 0.00 0.00 0.00 0.00 0.00 0.00 0.00 53.79 1.80 0.00 0.00 0.00 187.00 - 10.45 51.08 1954 0.00 0.00 0.00 16.46 3.06 0.00 72.86 16.60 0.00 0.00 1.74 0.00 0.00 0.00 0.00 0.00 0.00 0.00 45.64 1.54 0.00 0.00 0.00 157.91 - 10.45 51.08 1955 0.00 0.00 0.00 15.66 2.87 0.00 70.10 15.57 0.00 0.00 1.74 0.00 0.00 0.00 0.00 0.00 0.00 0.00 42.81 1.45 0.00 0.00 0.00 150.20 - 10.45 51.08 1956 0.00 0.00 0.00 15.38 2.80 0.00 69.33 15.16 0.00 0.00 1.77 0.00 0.00 0.00 0.00 0.00 0.00 0.00 41.70 1.43 0.00 0.00 0.00 147.58 - 10.45 51.08 1957 0.00 0.00 0.00 17.73 3.21 0.00 80.54 17.35 0.00 0.00 2.09 0.00 0.00 0.00 0.00 0.00 0.00 0.00 47.71 1.65 0.00 0.00 0.00 170.28 - 10.45 51.08 1958 0.00 0.00 0.00 16.91 3.04 0.00 77.15 16.40 0.00 0.00 2.07 0.00 0.00 0.00 0.00 0.00 0.00 0.00 45.11 1.57 0.00 0.00 0.00 162.26 - 10.45 51.08 1959 0.00 0.00 0.00 19.79 3.50 0.00 91.24 18.95 0.00 0.00 2.43 0.00 0.00 0.00 0.00 0.00 0.00 0.00 52.10 1.82 0.00 0.00 0.00 189.84 - 10.45 51.08 1960 0.00 0.00 0.00 16.32 0.00 0.00 75.46 15.61 0.00 0.00 2.12 0.00 0.00 0.00 0.00 0.00 0.00 0.00 42.93 1.52 0.00 0.00 0.00 153.96 - 10.45 51.08 1961 0.00 0.00 0.00 16.69 0.00 0.00 77.87 15.75 0.00 0.00 2.21 0.00 0.00 0.00 0.00 0.00 0.00 0.00 35.44 1.54 0.00 0.00 0.00 149.50 - 10.45 51.08 1962 0.00 0.00 0.00 15.67 0.00 0.00 73.64 14.77 0.00 0.00 2.17 0.00 0.00 0.00 0.00 0.00 0.00 0.00 33.23 1.46 0.00 0.00 0.00 140.93 - 10.45 51.08 1963 0.00 0.00 0.00 16.42 0.00 0.00 77.68 15.40 0.00 0.00 2.35 0.00 0.00 0.00 0.00 0.00 0.00 0.00 34.66 1.54 0.00 0.00 0.00 148.05 - 10.45 51.08 1964 0.00 0.00 0.00 17.86 0.00 0.00 85.67 16.51 0.00 0.00 2.64 0.00 0.00 0.00 0.00 0.00 0.00 0.00 37.15 1.66 0.00 0.00 0.00 161.50 - 10.45 51.08 1965 0.00 0.00 0.00 14.98 0.00 0.00 72.57 13.70 0.00 0.00 2.27 0.00 0.00 0.00 0.00 0.00 0.00 0.00 30.83 1.39 0.00 0.00 0.00 135.75 - 10.45 51.08 1966 0.00 0.00 0.00 16.36 0.00 0.00 80.08 14.94 0.00 0.00 2.58 0.00 0.00 0.00 0.00 0.00 0.00 0.00 33.62 1.54 0.00 0.00 0.00 149.12 - 10.45 51.08 1967 0.00 0.00 0.00 16.35 0.00 0.00 80.95 14.95 0.00 0.00 2.70 0.00 0.00 0.00 0.00 0.00 0.00 0.00 33.65 1.55 0.00 0.00 0.00 150.16 - 10.45 51.08 1968 0.00 0.00 0.00 15.27 0.00 0.00 76.92 13.75 0.00 0.00 2.70 0.00 0.00 0.00 0.00 0.00 0.00 0.00 30.95 1.44 0.00 0.00 0.00 141.03 - 10.45 51.08 1969 0.00 0.00 0.00 15.20 0.00 0.00 77.60 13.65 0.00 0.00 2.78 0.00 0.00 0.00 0.00 0.00 0.00 0.00 30.72 1.45 0.00 0.00 0.00 141.40 - 10.45 51.08 1970 0.00 0.00 0.00 14.15 0.00 0.00 73.53 12.54 0.00 0.00 2.61 0.00 0.00 0.00 0.00 0.00 0.00 0.00 28.22 1.34 0.00 0.00 0.00 132.41 - 10.45 51.08 1971 0.00 0.00 0.00 15.51 0.00 0.00 82.52 13.54 0.00 0.00 3.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 30.46 1.46 0.00 0.00 0.00 146.50 - 10.45 51.08 1972 0.00 0.00 0.00 13.42 0.00 0.00 72.62 11.67 0.00 0.00 2.73 0.00 0.00 0.00 0.00 0.00 0.00 0.00 26.26 1.27 0.00 0.00 0.00 127.98 - 10.45 51.08 1973 0.00 0.00 0.00 13.86 0.00 0.00 76.50 11.96 0.00 0.00 3.02 0.00 0.00 0.00 0.00 0.00 0.00 0.00 26.91 1.32 0.00 0.00 0.00 133.57 - 10.45 51.08 1974 0.00 0.00 0.00 13.40 0.00 0.00 76.06 11.51 0.00 0.00 3.08 0.00 0.00 0.00 0.00 0.00 0.00 0.00 20.15 1.28 0.00 0.00 0.00 125.48 - 10.45 51.08 1975 0.00 0.00 0.00 13.61 0.00 0.00 78.28 11.84 0.00 0.00 3.40 0.00 0.00 0.00 0.00 0.00 0.00 0.00 20.71 1.33 0.00 0.00 0.00 129.17 - 10.45 51.08 1976 0.00 0.00 0.00 13.99 0.00 0.00 83.47 12.06 0.00 0.00 3.82 0.00 0.00 0.00 0.00 0.00 0.00 0.00 21.10 1.38 0.00 0.00 0.00 135.81 - 10.45 51.08 1977 0.00 0.00 0.00 11.65 0.00 0.00 71.88 9.90 0.00 0.00 3.25 0.00 0.00 0.00 0.00 0.00 0.00 0.00 17.33 1.14 0.00 0.00 0.00 115.15 - 10.45 51.08 1978 0.00 0.00 0.00 11.38 0.00 0.00 71.86 9.78 0.00 0.00 3.40 0.00 0.00 0.00 0.00 0.00 0.00 0.00 17.12 1.14 0.00 0.00 0.00 114.68 - 10.45 51.08 1979 0.00 0.00 0.00 10.96 0.00 0.00 70.90 9.52 0.00 0.00 3.64 0.00 0.00 0.00 0.00 0.00 0.00 0.00 16.66 1.12 0.00 0.00 0.00 112.81 - 10.45 51.08 1980 0.00 0.00 0.00 0.00 0.00 0.00 69.85 9.28 0.00 0.00 3.85 0.00 0.00 0.00 0.00 0.00 0.00 0.00 16.24 0.00 0.00 0.00 0.00 99.23 - 10.45 51.08 1981 0.00 0.00 0.00 0.00 0.00 0.00 78.47 10.15 0.00 0.00 4.40 0.00 0.00 0.00 0.00 0.00 0.00 0.00 17.76 0.00 0.00 0.00 0.00 110.77 - 10.45 51.08 1982 0.00 0.00 0.00 0.00 0.00 0.00 84.65 11.17 0.00 0.00 5.13 0.00 0.00 0.00 0.00 0.00 0.00 0.00 16.76 0.00 0.00 0.00 0.00 117.71 - 10.45 51.08 1983 0.00 0.00 0.00 0.00 0.00 0.00 85.71 10.84 0.00 0.00 5.28 0.00 0.00 0.00 0.00 0.00 0.00 0.00 16.26 0.00 0.00 0.00 0.00 118.09 - 10.45 51.08 1984 0.00 0.00 0.00 0.00 0.00 0.00 66.16 8.18 0.00 0.00 4.41 0.00 0.00 0.00 0.00 0.00 0.00 0.00 12.27 0.00 0.00 0.00 0.00 91.02 - 10.45 51.08 1985 0.00 0.00 0.00 0.00 0.00 0.00 80.26 9.73 0.00 0.00 5.42 0.00 0.00 0.00 0.00 0.00 0.00 0.00 14.59 0.00 0.00 0.00 0.00 110.00 - 10.45 51.08 1986 0.00 0.00 0.00 0.00 0.00 0.00 78.05 9.42 0.00 0.00 5.56 0.00 0.00 0.00 0.00 0.00 0.00 0.00 14.14 0.00 0.00 0.00 0.00 107.18 - 10.45 51.08 1987 0.00 0.00 0.00 0.00 0.00 0.00 71.82 8.44 0.00 0.00 5.34 0.00 0.00 0.00 0.00 0.00 0.00 0.00 12.66 0.00 0.00 0.00 0.00 98.26 - 10.45 51.08 1988 0.00 0.00 0.00 0.00 0.00 0.00 81.84 9.61 0.00 0.00 6.32 0.00 0.00 0.00 0.00 0.00 0.00 0.00 14.41 0.00 0.00 0.00 0.00 112.18 - 10.45 51.08 1989 0.00 0.00 0.00 0.00 0.00 0.00 68.44 10.61 0.00 0.00 7.29 0.00 0.00 0.00 0.00 0.00 0.00 0.00 15.92 0.00 0.00 0.00 0.00 102.25 - 10.45 51.08 1990 0.00 0.00 0.00 0.00 0.00 0.00 61.92 10.00 0.00 0.00 7.21 0.00 0.00 0.00 0.00 0.00 0.00 0.00 15.00 0.00 0.00 0.00 0.00 94.12 - 10.45 51.08 1991 0.00 0.00 0.00 0.00 0.00 0.00 59.18 7.86 0.00 0.00 7.67 0.00 0.00 0.00 0.00 0.00 0.00 0.00 15.72 0.00 0.00 113.54 0.00 203.98 - 10.45 51.08 1992 0.00 0.00 0.00 0.00 0.00 0.00 61.11 8.38 0.00 0.00 8.63 0.00 0.00 0.00 0.00 0.00 0.00 0.00 16.75 0.00 0.00 81.89 0.00 176.76 - 10.45 51.08 1993 0.00 0.00 0.00 0.00 0.00 0.00 62.60 8.60 0.00 0.00 9.39 0.00 0.00 0.00 0.00 0.00 0.00 0.00 17.19 0.00 0.00 55.13 0.00 152.90 - 10.45 51.08 1994 0.00 0.00 0.00 0.00 0.00 0.00 67.39 9.46 0.00 0.00 10.62 0.00 0.00 0.00 0.00 0.00 0.00 0.00 18.92 0.00 0.00 40.45 0.00 146.85 - 10.45 51.08 1995 0.00 0.00 0.00 0.00 0.00 0.00 64.05 9.07 0.00 0.00 10.80 0.00 0.00 0.00 0.00 0.00 0.00 0.00 18.14 0.00 0.00 21.39 0.00 123.46 - 10.45 51.08 1996 0.00 0.00 0.00 0.00 0.00 0.00 55.24 7.54 0.00 0.00 9.92 0.00 0.00 0.00 0.00 0.00 0.00 0.00 15.07 0.00 0.00 8.75 0.00 96.52 - 10.45 51.08 1997 0.00 0.00 0.00 0.00 0.00 0.00 68.31 9.32 0.00 0.00 12.26 0.00 0.00 0.00 0.00 0.00 0.00 0.00 18.64 0.00 0.00 4.40 0.00 112.92 - 10.45 51.08 1998 0.00 0.00 0.00 0.00 0.00 0.00 66.51 9.00 0.00 0.00 12.49 0.00 0.00 0.00 0.00 0.00 0.00 0.00 18.00 0.00 0.00 3.19 0.00 109.19 - 10.45 51.08 1999 0.00 0.00 0.00 0.00 0.00 0.00 71.40 9.75 0.00 0.00 13.99 0.00 0.00 0.00 0.00 0.00 0.00 0.00 19.50 0.00 0.00 1.79 0.00 116.44 - 10.45 51.08 2000 0.00 0.00 0.00 0.00 0.00 0.00 70.06 9.58 0.00 0.00 14.30 0.00 0.00 0.00 0.00 0.00 0.00 0.00 19.16 0.00 0.00 1.04 0.00 114.13 - 10.45 51.08 2001 0.00 0.00 0.00 0.00 0.00 0.00 69.48 9.40 0.00 0.00 14.67 0.00 0.00 0.00 0.00 0.00 0.00 0.00 18.80 0.00 0.00 0.36 0.00 112.72 - 10.45 51.08 2002 0.00 0.00 0.00 0.00 0.00 0.00 67.60 8.92 0.00 0.00 14.47 0.00 0.00 0.00 0.00 0.00 0.00 0.00 17.84 0.00 0.00 0.16 0.00 109.00 - 10.45 51.08 2003 0.00 0.00 0.00 0.00 0.00 0.00 78.76 10.30 0.00 0.00 17.90 0.00 0.00 0.00 0.00 0.00 0.00 0.00 20.59 0.00 0.00 0.07 0.00 127.62 - 10.45 51.08 2004 0.00 0.00 0.00 0.00 0.00 0.00 76.05 9.52 0.00 0.00 17.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 19.04 0.00 0.00 0.03 0.00 121.63 - 10.45 51.08 2005 0.00 0.00 0.00 0.00 0.00 0.00 78.20 9.94 0.00 0.00 18.23 0.00 0.00 0.00 0.00 0.00 0.00 0.00 19.88 0.00 0.00 0.02 0.00 126.27 - 10.45 51.08 2006 0.00 0.00 0.00 0.00 0.00 0.00 81.06 10.17 0.00 0.00 19.41 0.00 0.00 0.00 0.00 0.00 0.00 0.00 20.33 0.00 0.00 0.01 0.00 130.99 - 10.45 51.08 2007 0.00 0.00 0.00 0.00 0.00 0.00 78.27 9.93 0.00 0.00 20.01 0.00 0.00 0.00 0.00 0.00 0.00 0.00 13.24 0.00 0.00 0.00 0.00 121.46 - 10.45 51.08 2008 0.00 0.00 0.00 0.00 0.00 0.00 80.21 6.49 0.00 0.00 20.26 0.00 0.00 0.00 0.00 0.00 0.00 0.00 12.98 0.00 0.00 0.00 0.00 119.95 - 10.45 51.08 2009 0.00 0.00 0.00 0.00 0.00 0.00 77.05 6.15 0.00 0.00 20.60 0.00 0.00 0.00 0.00 0.00 0.00 0.00 12.29 0.00 0.00 0.00 0.00 116.09 - 10.45 51.08 2010 0.00 0.00 0.00 0.00 0.00 0.00 77.27 6.08 0.00 0.00 20.52 0.00 0.00 0.00 0.00 0.00 0.00 0.00 12.17 0.00 0.00 0.00 0.00 116.04 - 10.45 51.08 2011 0.00 0.00 0.00 0.00 0.00 0.00 86.63 6.53 0.00 0.00 23.19 0.00 0.00 0.00 0.00 0.00 0.00 0.00 13.05 0.00 0.00 0.00 0.00 129.40 - 10.45 51.08 2012 0.00 0.00 0.00 0.00 0.00 0.00 83.52 6.35 0.00 0.00 23.04 0.00 0.00 0.00 0.00 0.00 0.00 0.00 12.70 0.00 0.00 0.00 0.00 125.60 diff --git a/rLPJGUESS/inst/extdata/outputsForTests/standard/outDirectory/agpp.out b/rLPJGUESS/inst/extdata/outputsForTests/standard/outDirectory/agpp.out deleted file mode 100644 index a9d803f..0000000 --- a/rLPJGUESS/inst/extdata/outputsForTests/standard/outDirectory/agpp.out +++ /dev/null @@ -1,63 +0,0 @@ - Lon Lat Year Abi_alb BES Bet_pen Bet_pub Car_bet Cor_ave Fag_syl Fra_exc Jun_oxy MRS Pic_abi Pic_sit Pin_syl Pin_hal Pop_tre Que_coc Que_ile Que_pub Que_rob Til_cor Ulm_gla C3_gr C4_gr Total - 10.45 51.08 1951 0.000 0.000 0.000 0.083 0.004 0.000 0.722 0.024 0.000 0.000 0.005 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.066 0.002 0.000 0.000 0.000 0.905 - 10.45 51.08 1952 0.000 0.000 0.000 0.082 0.004 0.000 0.731 0.023 0.000 0.000 0.004 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.062 0.002 0.000 0.000 0.000 0.908 - 10.45 51.08 1953 0.000 0.000 0.000 0.084 0.004 0.000 0.797 0.025 0.000 0.000 0.005 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.069 0.002 0.000 0.000 0.000 0.986 - 10.45 51.08 1954 0.000 0.000 0.000 0.071 0.004 0.000 0.701 0.021 0.000 0.000 0.005 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.058 0.002 0.000 0.000 0.000 0.860 - 10.45 51.08 1955 0.000 0.000 0.000 0.071 0.004 0.000 0.681 0.021 0.000 0.000 0.005 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.057 0.002 0.000 0.000 0.000 0.840 - 10.45 51.08 1956 0.000 0.000 0.000 0.067 0.004 0.000 0.696 0.020 0.000 0.000 0.005 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.056 0.002 0.000 0.000 0.000 0.850 - 10.45 51.08 1957 0.000 0.000 0.000 0.074 0.004 0.000 0.747 0.021 0.000 0.000 0.005 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.058 0.002 0.000 0.000 0.000 0.910 - 10.45 51.08 1958 0.000 0.000 0.000 0.065 0.003 0.000 0.738 0.019 0.000 0.000 0.005 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.053 0.002 0.000 0.000 0.000 0.885 - 10.45 51.08 1959 0.000 0.000 0.000 0.073 0.004 0.000 0.850 0.021 0.000 0.000 0.005 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.059 0.002 0.000 0.000 0.000 1.014 - 10.45 51.08 1960 0.000 0.000 0.000 0.064 0.003 0.000 0.742 0.019 0.000 0.000 0.005 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.051 0.002 0.000 0.000 0.000 0.886 - 10.45 51.08 1961 0.000 0.000 0.000 0.066 0.000 0.000 0.786 0.020 0.000 0.000 0.006 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.045 0.002 0.000 0.000 0.000 0.924 - 10.45 51.08 1962 0.000 0.000 0.000 0.061 0.000 0.000 0.742 0.018 0.000 0.000 0.006 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.041 0.002 0.000 0.000 0.000 0.869 - 10.45 51.08 1963 0.000 0.000 0.000 0.056 0.000 0.000 0.774 0.017 0.000 0.000 0.006 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.038 0.001 0.000 0.000 0.000 0.892 - 10.45 51.08 1964 0.000 0.000 0.000 0.058 0.000 0.000 0.819 0.017 0.000 0.000 0.006 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.039 0.002 0.000 0.000 0.000 0.941 - 10.45 51.08 1965 0.000 0.000 0.000 0.055 0.000 0.000 0.747 0.017 0.000 0.000 0.006 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.038 0.002 0.000 0.000 0.000 0.864 - 10.45 51.08 1966 0.000 0.000 0.000 0.054 0.000 0.000 0.824 0.017 0.000 0.000 0.006 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.039 0.002 0.000 0.000 0.000 0.943 - 10.45 51.08 1967 0.000 0.000 0.000 0.050 0.000 0.000 0.794 0.016 0.000 0.000 0.007 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.035 0.001 0.000 0.000 0.000 0.904 - 10.45 51.08 1968 0.000 0.000 0.000 0.050 0.000 0.000 0.793 0.016 0.000 0.000 0.007 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.036 0.001 0.000 0.000 0.000 0.903 - 10.45 51.08 1969 0.000 0.000 0.000 0.046 0.000 0.000 0.785 0.015 0.000 0.000 0.006 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.033 0.001 0.000 0.000 0.000 0.886 - 10.45 51.08 1970 0.000 0.000 0.000 0.041 0.000 0.000 0.755 0.013 0.000 0.000 0.006 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.030 0.001 0.000 0.000 0.000 0.846 - 10.45 51.08 1971 0.000 0.000 0.000 0.044 0.000 0.000 0.817 0.014 0.000 0.000 0.007 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.032 0.001 0.000 0.000 0.000 0.917 - 10.45 51.08 1972 0.000 0.000 0.000 0.040 0.000 0.000 0.753 0.013 0.000 0.000 0.008 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.029 0.001 0.000 0.000 0.000 0.844 - 10.45 51.08 1973 0.000 0.000 0.000 0.036 0.000 0.000 0.761 0.013 0.000 0.000 0.008 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.028 0.001 0.000 0.000 0.000 0.847 - 10.45 51.08 1974 0.000 0.000 0.000 0.039 0.000 0.000 0.797 0.014 0.000 0.000 0.009 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.024 0.001 0.000 0.000 0.000 0.884 - 10.45 51.08 1975 0.000 0.000 0.000 0.033 0.000 0.000 0.765 0.012 0.000 0.000 0.009 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.021 0.001 0.000 0.000 0.000 0.842 - 10.45 51.08 1976 0.000 0.000 0.000 0.031 0.000 0.000 0.799 0.011 0.000 0.000 0.009 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.019 0.001 0.000 0.000 0.000 0.870 - 10.45 51.08 1977 0.000 0.000 0.000 0.031 0.000 0.000 0.767 0.012 0.000 0.000 0.009 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.021 0.001 0.000 0.000 0.000 0.842 - 10.45 51.08 1978 0.000 0.000 0.000 0.030 0.000 0.000 0.747 0.012 0.000 0.000 0.010 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.020 0.001 0.000 0.000 0.000 0.820 - 10.45 51.08 1979 0.000 0.000 0.000 0.028 0.000 0.000 0.721 0.011 0.000 0.000 0.011 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.020 0.001 0.000 0.000 0.000 0.792 - 10.45 51.08 1980 0.000 0.000 0.000 0.026 0.000 0.000 0.711 0.011 0.000 0.000 0.013 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.019 0.001 0.000 0.000 0.000 0.781 - 10.45 51.08 1981 0.000 0.000 0.000 0.000 0.000 0.000 0.808 0.013 0.000 0.000 0.012 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.022 0.000 0.000 0.000 0.000 0.856 - 10.45 51.08 1982 0.000 0.000 0.000 0.000 0.000 0.000 0.793 0.011 0.000 0.000 0.015 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.016 0.000 0.000 0.000 0.000 0.834 - 10.45 51.08 1983 0.000 0.000 0.000 0.000 0.000 0.000 0.844 0.011 0.000 0.000 0.014 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.017 0.000 0.000 0.000 0.000 0.885 - 10.45 51.08 1984 0.000 0.000 0.000 0.000 0.000 0.000 0.701 0.010 0.000 0.000 0.015 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.015 0.000 0.000 0.000 0.000 0.741 - 10.45 51.08 1985 0.000 0.000 0.000 0.000 0.000 0.000 0.816 0.011 0.000 0.000 0.016 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.016 0.000 0.000 0.000 0.000 0.859 - 10.45 51.08 1986 0.000 0.000 0.000 0.000 0.000 0.000 0.796 0.010 0.000 0.000 0.016 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.015 0.000 0.000 0.000 0.000 0.836 - 10.45 51.08 1987 0.000 0.000 0.000 0.000 0.000 0.000 0.765 0.010 0.000 0.000 0.017 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.016 0.000 0.000 0.000 0.000 0.808 - 10.45 51.08 1988 0.000 0.000 0.000 0.000 0.000 0.000 0.839 0.011 0.000 0.000 0.019 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.016 0.000 0.000 0.000 0.000 0.885 - 10.45 51.08 1989 0.000 0.000 0.000 0.000 0.000 0.000 0.767 0.014 0.000 0.000 0.025 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.020 0.000 0.000 0.000 0.000 0.826 - 10.45 51.08 1990 0.000 0.000 0.000 0.000 0.000 0.000 0.815 0.017 0.000 0.000 0.031 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.025 0.000 0.000 0.000 0.000 0.888 - 10.45 51.08 1991 0.000 0.000 0.000 0.000 0.000 0.000 0.750 0.012 0.000 0.000 0.032 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.023 0.000 0.000 0.082 0.000 0.899 - 10.45 51.08 1992 0.000 0.000 0.000 0.000 0.000 0.000 0.724 0.011 0.000 0.000 0.037 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.021 0.000 0.000 0.054 0.000 0.846 - 10.45 51.08 1993 0.000 0.000 0.000 0.000 0.000 0.000 0.776 0.012 0.000 0.000 0.036 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.023 0.000 0.000 0.036 0.000 0.883 - 10.45 51.08 1994 0.000 0.000 0.000 0.000 0.000 0.000 0.776 0.011 0.000 0.000 0.040 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.023 0.000 0.000 0.023 0.000 0.873 - 10.45 51.08 1995 0.000 0.000 0.000 0.000 0.000 0.000 0.731 0.010 0.000 0.000 0.040 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.020 0.000 0.000 0.011 0.000 0.812 - 10.45 51.08 1996 0.000 0.000 0.000 0.000 0.000 0.000 0.682 0.010 0.000 0.000 0.039 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.020 0.000 0.000 0.004 0.000 0.756 - 10.45 51.08 1997 0.000 0.000 0.000 0.000 0.000 0.000 0.768 0.011 0.000 0.000 0.048 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.022 0.000 0.000 0.003 0.000 0.852 - 10.45 51.08 1998 0.000 0.000 0.000 0.000 0.000 0.000 0.790 0.011 0.000 0.000 0.048 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.023 0.000 0.000 0.002 0.000 0.874 - 10.45 51.08 1999 0.000 0.000 0.000 0.000 0.000 0.000 0.830 0.012 0.000 0.000 0.052 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.024 0.000 0.000 0.001 0.000 0.919 - 10.45 51.08 2000 0.000 0.000 0.000 0.000 0.000 0.000 0.810 0.011 0.000 0.000 0.057 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.023 0.000 0.000 0.000 0.000 0.901 - 10.45 51.08 2001 0.000 0.000 0.000 0.000 0.000 0.000 0.807 0.011 0.000 0.000 0.053 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.022 0.000 0.000 0.000 0.000 0.893 - 10.45 51.08 2002 0.000 0.000 0.000 0.000 0.000 0.000 0.775 0.011 0.000 0.000 0.055 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.022 0.000 0.000 0.000 0.000 0.863 - 10.45 51.08 2003 0.000 0.000 0.000 0.000 0.000 0.000 0.823 0.010 0.000 0.000 0.060 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.020 0.000 0.000 0.000 0.000 0.913 - 10.45 51.08 2004 0.000 0.000 0.000 0.000 0.000 0.000 0.889 0.012 0.000 0.000 0.063 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.024 0.000 0.000 0.000 0.000 0.988 - 10.45 51.08 2005 0.000 0.000 0.000 0.000 0.000 0.000 0.880 0.011 0.000 0.000 0.066 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.022 0.000 0.000 0.000 0.000 0.979 - 10.45 51.08 2006 0.000 0.000 0.000 0.000 0.000 0.000 0.870 0.010 0.000 0.000 0.066 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.020 0.000 0.000 0.000 0.000 0.966 - 10.45 51.08 2007 0.000 0.000 0.000 0.000 0.000 0.000 0.890 0.012 0.000 0.000 0.082 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.016 0.000 0.000 0.000 0.000 1.000 - 10.45 51.08 2008 0.000 0.000 0.000 0.000 0.000 0.000 0.873 0.007 0.000 0.000 0.076 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.015 0.000 0.000 0.000 0.000 0.971 - 10.45 51.08 2009 0.000 0.000 0.000 0.000 0.000 0.000 0.882 0.007 0.000 0.000 0.078 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.015 0.000 0.000 0.000 0.000 0.982 - 10.45 51.08 2010 0.000 0.000 0.000 0.000 0.000 0.000 0.813 0.006 0.000 0.000 0.070 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.012 0.000 0.000 0.000 0.000 0.902 - 10.45 51.08 2011 0.000 0.000 0.000 0.000 0.000 0.000 0.969 0.008 0.000 0.000 0.088 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.016 0.000 0.000 0.000 0.000 1.082 - 10.45 51.08 2012 0.000 0.000 0.000 0.000 0.000 0.000 0.905 0.008 0.000 0.000 0.088 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.015 0.000 0.000 0.000 0.000 1.015 diff --git a/rLPJGUESS/inst/extdata/outputsForTests/standard/outDirectory/aiso.out b/rLPJGUESS/inst/extdata/outputsForTests/standard/outDirectory/aiso.out deleted file mode 100644 index 7d6e828..0000000 --- a/rLPJGUESS/inst/extdata/outputsForTests/standard/outDirectory/aiso.out +++ /dev/null @@ -1,63 +0,0 @@ - Lon Lat Year Abi_alb BES Bet_pen Bet_pub Car_bet Cor_ave Fag_syl Fra_exc Jun_oxy MRS Pic_abi Pic_sit Pin_syl Pin_hal Pop_tre Que_coc Que_ile Que_pub Que_rob Til_cor Ulm_gla C3_gr C4_gr Total - 10.45 51.08 1951 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1952 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1953 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1954 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1955 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1956 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1957 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1958 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1959 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1960 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1961 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1962 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1963 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1964 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1965 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1966 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1967 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1968 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1969 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1970 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1971 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1972 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1973 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1974 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1975 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1976 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1977 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1978 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1979 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1980 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1981 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1982 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1983 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1984 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1985 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1986 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1987 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1988 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1989 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1990 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1991 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1992 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1993 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1994 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1995 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1996 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1997 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1998 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1999 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 2000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 2001 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 2002 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 2003 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 2004 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 2005 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 2006 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 2007 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 2008 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 2009 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 2010 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 2011 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 2012 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 diff --git a/rLPJGUESS/inst/extdata/outputsForTests/standard/outDirectory/amon.out b/rLPJGUESS/inst/extdata/outputsForTests/standard/outDirectory/amon.out deleted file mode 100644 index 7d6e828..0000000 --- a/rLPJGUESS/inst/extdata/outputsForTests/standard/outDirectory/amon.out +++ /dev/null @@ -1,63 +0,0 @@ - Lon Lat Year Abi_alb BES Bet_pen Bet_pub Car_bet Cor_ave Fag_syl Fra_exc Jun_oxy MRS Pic_abi Pic_sit Pin_syl Pin_hal Pop_tre Que_coc Que_ile Que_pub Que_rob Til_cor Ulm_gla C3_gr C4_gr Total - 10.45 51.08 1951 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1952 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1953 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1954 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1955 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1956 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1957 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1958 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1959 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1960 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1961 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1962 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1963 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1964 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1965 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1966 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1967 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1968 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1969 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1970 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1971 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1972 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1973 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1974 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1975 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1976 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1977 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1978 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1979 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1980 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1981 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1982 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1983 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1984 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1985 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1986 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1987 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1988 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1989 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1990 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1991 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1992 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1993 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1994 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1995 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1996 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1997 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1998 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1999 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 2000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 2001 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 2002 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 2003 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 2004 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 2005 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 2006 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 2007 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 2008 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 2009 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 2010 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 2011 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 2012 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 diff --git a/rLPJGUESS/inst/extdata/outputsForTests/standard/outDirectory/anpp.out b/rLPJGUESS/inst/extdata/outputsForTests/standard/outDirectory/anpp.out deleted file mode 100644 index 608cf90..0000000 --- a/rLPJGUESS/inst/extdata/outputsForTests/standard/outDirectory/anpp.out +++ /dev/null @@ -1,63 +0,0 @@ - Lon Lat Year Abi_alb BES Bet_pen Bet_pub Car_bet Cor_ave Fag_syl Fra_exc Jun_oxy MRS Pic_abi Pic_sit Pin_syl Pin_hal Pop_tre Que_coc Que_ile Que_pub Que_rob Til_cor Ulm_gla C3_gr C4_gr Total - 10.45 51.08 1951 0.000 0.000 0.000 0.037 0.002 0.000 0.310 0.011 0.000 0.000 0.002 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.031 0.001 0.000 0.000 0.000 0.395 - 10.45 51.08 1952 0.000 0.000 0.000 0.037 0.002 0.000 0.317 0.010 0.000 0.000 0.002 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.028 0.001 0.000 0.000 0.000 0.397 - 10.45 51.08 1953 0.000 0.000 0.000 0.036 0.002 0.000 0.342 0.012 0.000 0.000 0.002 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.032 0.001 0.000 0.000 0.000 0.428 - 10.45 51.08 1954 0.000 0.000 0.000 0.029 0.002 0.000 0.288 0.009 0.000 0.000 0.003 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.026 0.001 0.000 0.000 0.000 0.357 - 10.45 51.08 1955 0.000 0.000 0.000 0.032 0.002 0.000 0.284 0.010 0.000 0.000 0.002 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.027 0.001 0.000 0.000 0.000 0.357 - 10.45 51.08 1956 0.000 0.000 0.000 0.030 0.002 0.000 0.300 0.010 0.000 0.000 0.003 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.027 0.001 0.000 0.000 0.000 0.371 - 10.45 51.08 1957 0.000 0.000 0.000 0.033 0.002 0.000 0.312 0.009 0.000 0.000 0.003 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.026 0.001 0.000 0.000 0.000 0.385 - 10.45 51.08 1958 0.000 0.000 0.000 0.026 0.001 0.000 0.302 0.008 0.000 0.000 0.002 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.023 0.001 0.000 0.000 0.000 0.364 - 10.45 51.08 1959 0.000 0.000 0.000 0.033 0.002 0.000 0.378 0.010 0.000 0.000 0.003 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.027 0.001 0.000 0.000 0.000 0.453 - 10.45 51.08 1960 0.000 0.000 0.000 0.028 0.001 0.000 0.310 0.008 0.000 0.000 0.003 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.023 0.001 0.000 0.000 0.000 0.375 - 10.45 51.08 1961 0.000 0.000 0.000 0.029 0.000 0.000 0.324 0.009 0.000 0.000 0.003 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.021 0.001 0.000 0.000 0.000 0.386 - 10.45 51.08 1962 0.000 0.000 0.000 0.028 0.000 0.000 0.328 0.009 0.000 0.000 0.003 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.020 0.001 0.000 0.000 0.000 0.389 - 10.45 51.08 1963 0.000 0.000 0.000 0.024 0.000 0.000 0.336 0.008 0.000 0.000 0.003 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.017 0.001 0.000 0.000 0.000 0.388 - 10.45 51.08 1964 0.000 0.000 0.000 0.025 0.000 0.000 0.346 0.008 0.000 0.000 0.003 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.017 0.001 0.000 0.000 0.000 0.399 - 10.45 51.08 1965 0.000 0.000 0.000 0.025 0.000 0.000 0.322 0.008 0.000 0.000 0.003 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.019 0.001 0.000 0.000 0.000 0.378 - 10.45 51.08 1966 0.000 0.000 0.000 0.023 0.000 0.000 0.353 0.008 0.000 0.000 0.003 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.018 0.001 0.000 0.000 0.000 0.406 - 10.45 51.08 1967 0.000 0.000 0.000 0.020 0.000 0.000 0.315 0.007 0.000 0.000 0.004 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.015 0.001 0.000 0.000 0.000 0.360 - 10.45 51.08 1968 0.000 0.000 0.000 0.022 0.000 0.000 0.330 0.007 0.000 0.000 0.003 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.017 0.001 0.000 0.000 0.000 0.380 - 10.45 51.08 1969 0.000 0.000 0.000 0.019 0.000 0.000 0.325 0.006 0.000 0.000 0.003 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.014 0.001 0.000 0.000 0.000 0.368 - 10.45 51.08 1970 0.000 0.000 0.000 0.016 0.000 0.000 0.305 0.006 0.000 0.000 0.003 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.013 0.001 0.000 0.000 0.000 0.343 - 10.45 51.08 1971 0.000 0.000 0.000 0.018 0.000 0.000 0.338 0.006 0.000 0.000 0.004 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.015 0.001 0.000 0.000 0.000 0.381 - 10.45 51.08 1972 0.000 0.000 0.000 0.017 0.000 0.000 0.315 0.006 0.000 0.000 0.004 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.013 0.001 0.000 0.000 0.000 0.356 - 10.45 51.08 1973 0.000 0.000 0.000 0.014 0.000 0.000 0.300 0.005 0.000 0.000 0.004 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.012 0.001 0.000 0.000 0.000 0.336 - 10.45 51.08 1974 0.000 0.000 0.000 0.017 0.000 0.000 0.330 0.007 0.000 0.000 0.005 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.011 0.001 0.000 0.000 0.000 0.370 - 10.45 51.08 1975 0.000 0.000 0.000 0.012 0.000 0.000 0.286 0.005 0.000 0.000 0.004 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.009 0.001 0.000 0.000 0.000 0.316 - 10.45 51.08 1976 0.000 0.000 0.000 0.011 0.000 0.000 0.319 0.004 0.000 0.000 0.004 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.008 0.001 0.000 0.000 0.000 0.347 - 10.45 51.08 1977 0.000 0.000 0.000 0.013 0.000 0.000 0.307 0.006 0.000 0.000 0.005 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.010 0.001 0.000 0.000 0.000 0.341 - 10.45 51.08 1978 0.000 0.000 0.000 0.013 0.000 0.000 0.306 0.006 0.000 0.000 0.006 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.010 0.001 0.000 0.000 0.000 0.341 - 10.45 51.08 1979 0.000 0.000 0.000 0.011 0.000 0.000 0.281 0.005 0.000 0.000 0.006 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.010 0.001 0.000 0.000 0.000 0.314 - 10.45 51.08 1980 0.000 0.000 0.000 0.011 0.000 0.000 0.283 0.005 0.000 0.000 0.007 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.009 0.001 0.000 0.000 0.000 0.315 - 10.45 51.08 1981 0.000 0.000 0.000 0.000 0.000 0.000 0.339 0.006 0.000 0.000 0.006 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.011 0.000 0.000 0.000 0.000 0.363 - 10.45 51.08 1982 0.000 0.000 0.000 0.000 0.000 0.000 0.291 0.004 0.000 0.000 0.007 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.006 0.000 0.000 0.000 0.000 0.308 - 10.45 51.08 1983 0.000 0.000 0.000 0.000 0.000 0.000 0.340 0.005 0.000 0.000 0.007 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.007 0.000 0.000 0.000 0.000 0.359 - 10.45 51.08 1984 0.000 0.000 0.000 0.000 0.000 0.000 0.270 0.005 0.000 0.000 0.008 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.007 0.000 0.000 0.000 0.000 0.289 - 10.45 51.08 1985 0.000 0.000 0.000 0.000 0.000 0.000 0.350 0.005 0.000 0.000 0.008 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.008 0.000 0.000 0.000 0.000 0.371 - 10.45 51.08 1986 0.000 0.000 0.000 0.000 0.000 0.000 0.323 0.004 0.000 0.000 0.008 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.006 0.000 0.000 0.000 0.000 0.342 - 10.45 51.08 1987 0.000 0.000 0.000 0.000 0.000 0.000 0.318 0.005 0.000 0.000 0.009 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.008 0.000 0.000 0.000 0.000 0.340 - 10.45 51.08 1988 0.000 0.000 0.000 0.000 0.000 0.000 0.335 0.005 0.000 0.000 0.010 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.008 0.000 0.000 0.000 0.000 0.358 - 10.45 51.08 1989 0.000 0.000 0.000 0.000 0.000 0.000 0.346 0.007 0.000 0.000 0.014 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.010 0.000 0.000 0.000 0.000 0.377 - 10.45 51.08 1990 0.000 0.000 0.000 0.000 0.000 0.000 0.374 0.009 0.000 0.000 0.018 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.014 0.000 0.000 0.000 0.000 0.415 - 10.45 51.08 1991 0.000 0.000 0.000 0.000 0.000 0.000 0.323 0.006 0.000 0.000 0.018 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.012 0.000 0.000 0.032 0.000 0.390 - 10.45 51.08 1992 0.000 0.000 0.000 0.000 0.000 0.000 0.284 0.005 0.000 0.000 0.020 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.010 0.000 0.000 0.020 0.000 0.339 - 10.45 51.08 1993 0.000 0.000 0.000 0.000 0.000 0.000 0.339 0.006 0.000 0.000 0.019 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.012 0.000 0.000 0.014 0.000 0.389 - 10.45 51.08 1994 0.000 0.000 0.000 0.000 0.000 0.000 0.301 0.005 0.000 0.000 0.020 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.010 0.000 0.000 0.007 0.000 0.344 - 10.45 51.08 1995 0.000 0.000 0.000 0.000 0.000 0.000 0.287 0.004 0.000 0.000 0.020 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.009 0.000 0.000 0.003 0.000 0.323 - 10.45 51.08 1996 0.000 0.000 0.000 0.000 0.000 0.000 0.288 0.005 0.000 0.000 0.020 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.010 0.000 0.000 0.001 0.000 0.325 - 10.45 51.08 1997 0.000 0.000 0.000 0.000 0.000 0.000 0.316 0.005 0.000 0.000 0.025 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.011 0.000 0.000 0.001 0.000 0.358 - 10.45 51.08 1998 0.000 0.000 0.000 0.000 0.000 0.000 0.325 0.006 0.000 0.000 0.024 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.011 0.000 0.000 0.001 0.000 0.366 - 10.45 51.08 1999 0.000 0.000 0.000 0.000 0.000 0.000 0.340 0.006 0.000 0.000 0.026 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.011 0.000 0.000 0.000 0.000 0.383 - 10.45 51.08 2000 0.000 0.000 0.000 0.000 0.000 0.000 0.313 0.005 0.000 0.000 0.028 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.010 0.000 0.000 0.000 0.000 0.357 - 10.45 51.08 2001 0.000 0.000 0.000 0.000 0.000 0.000 0.326 0.005 0.000 0.000 0.025 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.010 0.000 0.000 0.000 0.000 0.366 - 10.45 51.08 2002 0.000 0.000 0.000 0.000 0.000 0.000 0.294 0.005 0.000 0.000 0.027 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.010 0.000 0.000 0.000 0.000 0.336 - 10.45 51.08 2003 0.000 0.000 0.000 0.000 0.000 0.000 0.312 0.004 0.000 0.000 0.028 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.008 0.000 0.000 0.000 0.000 0.352 - 10.45 51.08 2004 0.000 0.000 0.000 0.000 0.000 0.000 0.389 0.006 0.000 0.000 0.032 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.012 0.000 0.000 0.000 0.000 0.439 - 10.45 51.08 2005 0.000 0.000 0.000 0.000 0.000 0.000 0.364 0.005 0.000 0.000 0.032 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.010 0.000 0.000 0.000 0.000 0.412 - 10.45 51.08 2006 0.000 0.000 0.000 0.000 0.000 0.000 0.330 0.004 0.000 0.000 0.030 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.008 0.000 0.000 0.000 0.000 0.373 - 10.45 51.08 2007 0.000 0.000 0.000 0.000 0.000 0.000 0.350 0.006 0.000 0.000 0.043 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.008 0.000 0.000 0.000 0.000 0.406 - 10.45 51.08 2008 0.000 0.000 0.000 0.000 0.000 0.000 0.342 0.003 0.000 0.000 0.037 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.007 0.000 0.000 0.000 0.000 0.389 - 10.45 51.08 2009 0.000 0.000 0.000 0.000 0.000 0.000 0.345 0.003 0.000 0.000 0.037 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.007 0.000 0.000 0.000 0.000 0.392 - 10.45 51.08 2010 0.000 0.000 0.000 0.000 0.000 0.000 0.317 0.003 0.000 0.000 0.032 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.005 0.000 0.000 0.000 0.000 0.357 - 10.45 51.08 2011 0.000 0.000 0.000 0.000 0.000 0.000 0.399 0.004 0.000 0.000 0.044 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.008 0.000 0.000 0.000 0.000 0.455 - 10.45 51.08 2012 0.000 0.000 0.000 0.000 0.000 0.000 0.350 0.004 0.000 0.000 0.042 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.007 0.000 0.000 0.000 0.000 0.403 diff --git a/rLPJGUESS/inst/extdata/outputsForTests/standard/outDirectory/cflux.out b/rLPJGUESS/inst/extdata/outputsForTests/standard/outDirectory/cflux.out deleted file mode 100644 index d1164b1..0000000 --- a/rLPJGUESS/inst/extdata/outputsForTests/standard/outDirectory/cflux.out +++ /dev/null @@ -1,63 +0,0 @@ - Lon Lat Year Veg Repr Soil Fire Est NEE - 10.45 51.08 1951 -0.395 0.039 0.364 0.007 0.000 0.01554 - 10.45 51.08 1952 -0.397 0.040 0.377 0.027 0.000 0.04654 - 10.45 51.08 1953 -0.428 0.043 0.414 0.006 0.000 0.03540 - 10.45 51.08 1954 -0.357 0.036 0.334 0.006 0.000 0.01865 - 10.45 51.08 1955 -0.357 0.036 0.307 0.006 0.000 -0.00834 - 10.45 51.08 1956 -0.371 0.037 0.294 0.006 0.000 -0.03368 - 10.45 51.08 1957 -0.385 0.039 0.339 0.006 0.000 -0.00228 - 10.45 51.08 1958 -0.364 0.036 0.328 0.006 0.000 0.00566 - 10.45 51.08 1959 -0.453 0.045 0.384 0.035 0.000 0.01097 - 10.45 51.08 1960 -0.375 0.037 0.302 0.005 -0.000 -0.03000 - 10.45 51.08 1961 -0.386 0.039 0.354 0.005 0.000 0.01180 - 10.45 51.08 1962 -0.389 0.039 0.302 0.005 0.000 -0.04243 - 10.45 51.08 1963 -0.388 0.039 0.296 0.005 0.000 -0.04735 - 10.45 51.08 1964 -0.399 0.040 0.333 0.005 0.000 -0.02153 - 10.45 51.08 1965 -0.378 0.038 0.270 0.005 0.000 -0.06506 - 10.45 51.08 1966 -0.406 0.041 0.293 0.005 0.000 -0.06838 - 10.45 51.08 1967 -0.360 0.036 0.311 0.005 0.000 -0.00815 - 10.45 51.08 1968 -0.380 0.038 0.296 0.005 -0.000 -0.04224 - 10.45 51.08 1969 -0.368 0.037 0.291 0.010 0.000 -0.03013 - 10.45 51.08 1970 -0.343 0.034 0.270 0.004 -0.000 -0.03412 - 10.45 51.08 1971 -0.381 0.038 0.325 0.014 0.000 -0.00454 - 10.45 51.08 1972 -0.356 0.036 0.242 0.004 0.000 -0.07372 - 10.45 51.08 1973 -0.336 0.034 0.299 0.004 -0.000 0.00047 - 10.45 51.08 1974 -0.370 0.037 0.269 0.004 0.000 -0.06045 - 10.45 51.08 1975 -0.316 0.032 0.309 0.005 -0.000 0.02937 - 10.45 51.08 1976 -0.347 0.035 0.319 0.010 0.000 0.01635 - 10.45 51.08 1977 -0.341 0.034 0.238 0.004 0.000 -0.06450 - 10.45 51.08 1978 -0.341 0.034 0.253 0.004 0.000 -0.04931 - 10.45 51.08 1979 -0.314 0.031 0.261 0.004 -0.000 -0.01784 - 10.45 51.08 1980 -0.315 0.032 0.259 0.004 0.000 -0.02103 - 10.45 51.08 1981 -0.363 0.036 0.287 0.006 0.000 -0.03446 - 10.45 51.08 1982 -0.308 0.031 0.399 0.016 0.000 0.13720 - 10.45 51.08 1983 -0.359 0.036 0.343 0.006 -0.000 0.02579 - 10.45 51.08 1984 -0.289 0.029 0.253 0.005 -0.000 -0.00220 - 10.45 51.08 1985 -0.371 0.037 0.315 0.005 0.000 -0.01405 - 10.45 51.08 1986 -0.342 0.034 0.291 0.005 -0.000 -0.01106 - 10.45 51.08 1987 -0.340 0.034 0.247 0.005 0.000 -0.05404 - 10.45 51.08 1988 -0.358 0.036 0.337 0.005 -0.000 0.02036 - 10.45 51.08 1989 -0.377 0.038 0.417 0.007 -0.000 0.08462 - 10.45 51.08 1990 -0.415 0.041 0.385 0.007 -0.061 -0.04241 - 10.45 51.08 1991 -0.390 0.039 0.419 0.039 -0.001 0.10567 - 10.45 51.08 1992 -0.339 0.034 0.417 0.011 0.000 0.12362 - 10.45 51.08 1993 -0.389 0.039 0.348 0.007 0.000 0.00476 - 10.45 51.08 1994 -0.344 0.034 0.376 0.006 0.000 0.07294 - 10.45 51.08 1995 -0.323 0.032 0.333 0.006 0.000 0.04773 - 10.45 51.08 1996 -0.325 0.032 0.269 0.006 -0.000 -0.01780 - 10.45 51.08 1997 -0.358 0.036 0.345 0.006 -0.000 0.02847 - 10.45 51.08 1998 -0.366 0.037 0.322 0.005 0.000 -0.00208 - 10.45 51.08 1999 -0.383 0.038 0.338 0.005 -0.000 -0.00131 - 10.45 51.08 2000 -0.357 0.036 0.339 0.005 0.000 0.02338 - 10.45 51.08 2001 -0.366 0.037 0.315 0.005 -0.000 -0.00883 - 10.45 51.08 2002 -0.336 0.034 0.288 0.005 0.000 -0.00886 - 10.45 51.08 2003 -0.352 0.035 0.356 0.015 0.000 0.05382 - 10.45 51.08 2004 -0.439 0.044 0.307 0.005 0.000 -0.08344 - 10.45 51.08 2005 -0.412 0.041 0.299 0.004 0.000 -0.06761 - 10.45 51.08 2006 -0.373 0.037 0.313 0.004 -0.000 -0.01819 - 10.45 51.08 2007 -0.406 0.041 0.293 0.004 0.000 -0.06762 - 10.45 51.08 2008 -0.389 0.039 0.327 0.004 0.000 -0.01853 - 10.45 51.08 2009 -0.392 0.039 0.304 0.004 0.000 -0.04439 - 10.45 51.08 2010 -0.357 0.036 0.268 0.004 -0.000 -0.04864 - 10.45 51.08 2011 -0.455 0.046 0.325 0.007 0.000 -0.07793 - 10.45 51.08 2012 -0.403 0.040 0.305 0.004 -0.000 -0.05350 diff --git a/rLPJGUESS/inst/extdata/outputsForTests/standard/outDirectory/clitter.out b/rLPJGUESS/inst/extdata/outputsForTests/standard/outDirectory/clitter.out deleted file mode 100644 index a59d029..0000000 --- a/rLPJGUESS/inst/extdata/outputsForTests/standard/outDirectory/clitter.out +++ /dev/null @@ -1,63 +0,0 @@ - Lon Lat Year Abi_alb BES Bet_pen Bet_pub Car_bet Cor_ave Fag_syl Fra_exc Jun_oxy MRS Pic_abi Pic_sit Pin_syl Pin_hal Pop_tre Que_coc Que_ile Que_pub Que_rob Til_cor Ulm_gla C3_gr C4_gr Total - 10.45 51.08 1951 0.000 0.000 0.000 0.013 0.001 0.000 0.128 0.006 0.000 0.000 0.001 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.017 0.001 0.000 0.000 0.000 0.167 - 10.45 51.08 1952 0.000 0.000 0.000 0.012 0.001 0.000 0.130 0.006 0.000 0.000 0.002 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.017 0.001 0.000 0.000 0.000 0.168 - 10.45 51.08 1953 0.000 0.000 0.000 0.012 0.001 0.000 0.132 0.006 0.000 0.000 0.002 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.017 0.001 0.000 0.000 0.000 0.170 - 10.45 51.08 1954 0.000 0.000 0.000 0.012 0.001 0.000 0.134 0.006 0.000 0.000 0.002 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.017 0.001 0.000 0.000 0.000 0.173 - 10.45 51.08 1955 0.000 0.000 0.000 0.012 0.001 0.000 0.134 0.006 0.000 0.000 0.002 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.016 0.001 0.000 0.000 0.000 0.171 - 10.45 51.08 1956 0.000 0.000 0.000 0.011 0.001 0.000 0.134 0.006 0.000 0.000 0.002 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.016 0.001 0.000 0.000 0.000 0.170 - 10.45 51.08 1957 0.000 0.000 0.000 0.011 0.001 0.000 0.134 0.006 0.000 0.000 0.002 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.016 0.001 0.000 0.000 0.000 0.170 - 10.45 51.08 1958 0.000 0.000 0.000 0.011 0.001 0.000 0.136 0.006 0.000 0.000 0.002 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.015 0.001 0.000 0.000 0.000 0.171 - 10.45 51.08 1959 0.000 0.000 0.000 0.010 0.001 0.000 0.135 0.005 0.000 0.000 0.002 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.015 0.001 0.000 0.000 0.000 0.169 - 10.45 51.08 1960 0.000 0.000 0.000 0.010 0.077 0.000 0.139 0.005 0.000 0.000 0.002 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.239 0.001 0.000 0.000 0.000 0.474 - 10.45 51.08 1961 0.000 0.000 0.000 0.010 0.000 0.000 0.140 0.005 0.000 0.000 0.002 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.012 0.000 0.000 0.000 0.000 0.169 - 10.45 51.08 1962 0.000 0.000 0.000 0.010 0.000 0.000 0.141 0.005 0.000 0.000 0.002 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.012 0.001 0.000 0.000 0.000 0.170 - 10.45 51.08 1963 0.000 0.000 0.000 0.010 0.000 0.000 0.141 0.005 0.000 0.000 0.002 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.011 0.001 0.000 0.000 0.000 0.170 - 10.45 51.08 1964 0.000 0.000 0.000 0.009 0.000 0.000 0.143 0.005 0.000 0.000 0.002 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.011 0.000 0.000 0.000 0.000 0.171 - 10.45 51.08 1965 0.000 0.000 0.000 0.009 0.000 0.000 0.144 0.005 0.000 0.000 0.002 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.011 0.000 0.000 0.000 0.000 0.171 - 10.45 51.08 1966 0.000 0.000 0.000 0.009 0.000 0.000 0.144 0.005 0.000 0.000 0.002 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.011 0.000 0.000 0.000 0.000 0.171 - 10.45 51.08 1967 0.000 0.000 0.000 0.009 0.000 0.000 0.146 0.005 0.000 0.000 0.002 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.011 0.000 0.000 0.000 0.000 0.172 - 10.45 51.08 1968 0.000 0.000 0.000 0.008 0.000 0.000 0.145 0.004 0.000 0.000 0.002 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.010 0.000 0.000 0.000 0.000 0.171 - 10.45 51.08 1969 0.000 0.000 0.000 0.008 0.000 0.000 0.145 0.004 0.000 0.000 0.002 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.010 0.000 0.000 0.000 0.000 0.171 - 10.45 51.08 1970 0.000 0.000 0.000 0.008 0.000 0.000 0.146 0.004 0.000 0.000 0.002 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.010 0.000 0.000 0.000 0.000 0.170 - 10.45 51.08 1971 0.000 0.000 0.000 0.007 0.000 0.000 0.145 0.004 0.000 0.000 0.002 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.009 0.000 0.000 0.000 0.000 0.168 - 10.45 51.08 1972 0.000 0.000 0.000 0.007 0.000 0.000 0.145 0.004 0.000 0.000 0.003 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.009 0.000 0.000 0.000 0.000 0.168 - 10.45 51.08 1973 0.000 0.000 0.000 0.007 0.000 0.000 0.145 0.004 0.000 0.000 0.003 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.245 0.000 0.000 0.000 0.000 0.404 - 10.45 51.08 1974 0.000 0.000 0.000 0.006 0.000 0.000 0.144 0.004 0.000 0.000 0.003 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.006 0.000 0.000 0.000 0.000 0.164 - 10.45 51.08 1975 0.000 0.000 0.000 0.006 0.000 0.000 0.144 0.004 0.000 0.000 0.003 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.006 0.000 0.000 0.000 0.000 0.164 - 10.45 51.08 1976 0.000 0.000 0.000 0.006 0.000 0.000 0.143 0.003 0.000 0.000 0.003 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.006 0.000 0.000 0.000 0.000 0.161 - 10.45 51.08 1977 0.000 0.000 0.000 0.005 0.000 0.000 0.143 0.003 0.000 0.000 0.003 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.006 0.000 0.000 0.000 0.000 0.161 - 10.45 51.08 1978 0.000 0.000 0.000 0.005 0.000 0.000 0.142 0.003 0.000 0.000 0.003 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.006 0.000 0.000 0.000 0.000 0.160 - 10.45 51.08 1979 0.000 0.000 0.000 0.005 0.000 0.000 0.141 0.003 0.000 0.000 0.004 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.006 0.000 0.000 0.000 0.000 0.159 - 10.45 51.08 1980 0.000 0.000 0.000 2.622 0.000 0.000 0.140 0.003 0.000 0.000 0.004 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.006 0.032 0.000 0.000 0.000 2.806 - 10.45 51.08 1981 0.000 0.000 0.000 0.000 0.000 0.000 0.139 0.003 0.000 0.000 0.004 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.127 0.000 0.000 0.000 0.000 0.273 - 10.45 51.08 1982 0.000 0.000 0.000 0.000 0.000 0.000 0.139 0.003 0.000 0.000 0.004 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.005 0.000 0.000 0.000 0.000 0.152 - 10.45 51.08 1983 0.000 0.000 0.000 0.000 0.000 0.000 0.139 0.003 0.000 0.000 0.005 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.004 0.000 0.000 0.000 0.000 0.151 - 10.45 51.08 1984 0.000 0.000 0.000 0.000 0.000 0.000 0.140 0.003 0.000 0.000 0.005 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.004 0.000 0.000 0.000 0.000 0.152 - 10.45 51.08 1985 0.000 0.000 0.000 0.000 0.000 0.000 0.138 0.003 0.000 0.000 0.005 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.004 0.000 0.000 0.000 0.000 0.150 - 10.45 51.08 1986 0.000 0.000 0.000 0.000 0.000 0.000 0.139 0.003 0.000 0.000 0.005 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.004 0.000 0.000 0.000 0.000 0.152 - 10.45 51.08 1987 0.000 0.000 0.000 0.000 0.000 0.000 0.140 0.003 0.000 0.000 0.006 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.004 0.000 0.000 0.000 0.000 0.152 - 10.45 51.08 1988 0.000 0.000 0.000 0.000 0.000 0.000 2.881 0.003 0.000 0.000 0.006 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.004 0.000 0.000 0.000 0.000 2.893 - 10.45 51.08 1989 0.000 0.000 0.000 0.000 0.000 0.000 0.105 0.003 0.000 0.000 0.006 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.004 0.000 0.000 0.000 0.000 0.118 - 10.45 51.08 1990 0.000 0.000 0.000 0.000 0.000 0.000 0.110 0.129 0.000 0.000 0.007 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.004 0.000 0.000 0.000 0.000 0.250 - 10.45 51.08 1991 0.000 0.000 0.000 0.000 0.000 0.000 0.114 0.002 0.000 0.000 0.009 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.005 0.000 0.000 0.049 0.000 0.179 - 10.45 51.08 1992 0.000 0.000 0.000 0.000 0.000 0.000 0.117 0.003 0.000 0.000 0.010 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.005 0.000 0.000 0.033 0.000 0.167 - 10.45 51.08 1993 0.000 0.000 0.000 0.000 0.000 0.000 0.118 0.003 0.000 0.000 0.011 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.005 0.000 0.000 0.021 0.000 0.158 - 10.45 51.08 1994 0.000 0.000 0.000 0.000 0.000 0.000 0.121 0.003 0.000 0.000 0.011 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.005 0.000 0.000 0.014 0.000 0.155 - 10.45 51.08 1995 0.000 0.000 0.000 0.000 0.000 0.000 0.122 0.003 0.000 0.000 0.012 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.005 0.000 0.000 0.008 0.000 0.150 - 10.45 51.08 1996 0.000 0.000 0.000 0.000 0.000 0.000 0.123 0.003 0.000 0.000 0.013 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.005 0.000 0.000 0.004 0.000 0.147 - 10.45 51.08 1997 0.000 0.000 0.000 0.000 0.000 0.000 0.123 0.003 0.000 0.000 0.013 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.005 0.000 0.000 0.002 0.000 0.146 - 10.45 51.08 1998 0.000 0.000 0.000 0.000 0.000 0.000 0.125 0.003 0.000 0.000 0.014 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.005 0.000 0.000 0.001 0.000 0.148 - 10.45 51.08 1999 0.000 0.000 0.000 0.000 0.000 0.000 0.126 0.003 0.000 0.000 0.015 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.005 0.000 0.000 0.001 0.000 0.150 - 10.45 51.08 2000 0.000 0.000 0.000 0.000 0.000 0.000 0.129 0.003 0.000 0.000 0.016 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.005 0.000 0.000 0.000 0.000 0.153 - 10.45 51.08 2001 0.000 0.000 0.000 0.000 0.000 0.000 0.130 0.003 0.000 0.000 0.017 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.005 0.000 0.000 0.000 0.000 0.155 - 10.45 51.08 2002 0.000 0.000 0.000 0.000 0.000 0.000 0.131 0.003 0.000 0.000 0.017 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.005 0.000 0.000 0.000 0.000 0.156 - 10.45 51.08 2003 0.000 0.000 0.000 0.000 0.000 0.000 0.131 0.003 0.000 0.000 0.018 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.005 0.000 0.000 0.000 0.000 0.157 - 10.45 51.08 2004 0.000 0.000 0.000 0.000 0.000 0.000 0.132 0.003 0.000 0.000 0.018 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.005 0.000 0.000 0.000 0.000 0.158 - 10.45 51.08 2005 0.000 0.000 0.000 0.000 0.000 0.000 0.135 0.003 0.000 0.000 0.019 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.005 0.000 0.000 0.000 0.000 0.163 - 10.45 51.08 2006 0.000 0.000 0.000 0.000 0.000 0.000 0.138 0.003 0.000 0.000 0.020 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.279 0.000 0.000 0.000 0.000 0.440 - 10.45 51.08 2007 0.000 0.000 0.000 0.000 0.000 0.000 0.139 0.140 0.000 0.000 0.021 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.004 0.000 0.000 0.000 0.000 0.303 - 10.45 51.08 2008 0.000 0.000 0.000 0.000 0.000 0.000 0.140 0.002 0.000 0.000 0.023 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.004 0.000 0.000 0.000 0.000 0.168 - 10.45 51.08 2009 0.000 0.000 0.000 0.000 0.000 0.000 0.141 0.002 0.000 0.000 0.023 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.004 0.000 0.000 0.000 0.000 0.170 - 10.45 51.08 2010 0.000 0.000 0.000 0.000 0.000 0.000 0.142 0.002 0.000 0.000 0.024 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.004 0.000 0.000 0.000 0.000 0.172 - 10.45 51.08 2011 0.000 0.000 0.000 0.000 0.000 0.000 0.142 0.002 0.000 0.000 0.024 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.003 0.000 0.000 0.000 0.000 0.171 - 10.45 51.08 2012 0.000 0.000 0.000 0.000 0.000 0.000 0.146 0.002 0.000 0.000 0.025 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.004 0.000 0.000 0.000 0.000 0.176 diff --git a/rLPJGUESS/inst/extdata/outputsForTests/standard/outDirectory/cmass.out b/rLPJGUESS/inst/extdata/outputsForTests/standard/outDirectory/cmass.out deleted file mode 100644 index e0f503d..0000000 --- a/rLPJGUESS/inst/extdata/outputsForTests/standard/outDirectory/cmass.out +++ /dev/null @@ -1,63 +0,0 @@ - Lon Lat Year Abi_alb BES Bet_pen Bet_pub Car_bet Cor_ave Fag_syl Fra_exc Jun_oxy MRS Pic_abi Pic_sit Pin_syl Pin_hal Pop_tre Que_coc Que_ile Que_pub Que_rob Til_cor Ulm_gla C3_gr C4_gr Total - 10.45 51.08 1951 0.000 0.000 0.000 2.283 0.072 0.000 5.585 0.423 0.000 0.000 0.010 0.000 0.000 0.000 0.000 0.000 0.000 0.000 1.163 0.026 0.000 0.000 0.000 9.562 - 10.45 51.08 1952 0.000 0.000 0.000 2.304 0.073 0.000 5.740 0.426 0.000 0.000 0.010 0.000 0.000 0.000 0.000 0.000 0.000 0.000 1.171 0.027 0.000 0.000 0.000 9.750 - 10.45 51.08 1953 0.000 0.000 0.000 2.324 0.073 0.000 5.916 0.430 0.000 0.000 0.011 0.000 0.000 0.000 0.000 0.000 0.000 0.000 1.183 0.027 0.000 0.000 0.000 9.965 - 10.45 51.08 1954 0.000 0.000 0.000 2.339 0.074 0.000 6.041 0.433 0.000 0.000 0.012 0.000 0.000 0.000 0.000 0.000 0.000 0.000 1.189 0.027 0.000 0.000 0.000 10.114 - 10.45 51.08 1955 0.000 0.000 0.000 2.356 0.074 0.000 6.162 0.435 0.000 0.000 0.012 0.000 0.000 0.000 0.000 0.000 0.000 0.000 1.197 0.027 0.000 0.000 0.000 10.263 - 10.45 51.08 1956 0.000 0.000 0.000 2.371 0.075 0.000 6.298 0.438 0.000 0.000 0.012 0.000 0.000 0.000 0.000 0.000 0.000 0.000 1.205 0.028 0.000 0.000 0.000 10.426 - 10.45 51.08 1957 0.000 0.000 0.000 2.390 0.075 0.000 6.444 0.441 0.000 0.000 0.013 0.000 0.000 0.000 0.000 0.000 0.000 0.000 1.213 0.028 0.000 0.000 0.000 10.603 - 10.45 51.08 1958 0.000 0.000 0.000 2.403 0.075 0.000 6.580 0.443 0.000 0.000 0.013 0.000 0.000 0.000 0.000 0.000 0.000 0.000 1.218 0.028 0.000 0.000 0.000 10.759 - 10.45 51.08 1959 0.000 0.000 0.000 2.422 0.076 0.000 6.784 0.446 0.000 0.000 0.014 0.000 0.000 0.000 0.000 0.000 0.000 0.000 1.228 0.028 0.000 0.000 0.000 10.997 - 10.45 51.08 1960 0.000 0.000 0.000 2.437 0.000 0.000 6.923 0.448 0.000 0.000 0.014 0.000 0.000 0.000 0.000 0.000 0.000 0.000 1.009 0.028 0.000 0.000 0.000 10.860 - 10.45 51.08 1961 0.000 0.000 0.000 2.453 0.000 0.000 7.076 0.451 0.000 0.000 0.015 0.000 0.000 0.000 0.000 0.000 0.000 0.000 1.016 0.029 0.000 0.000 0.000 11.039 - 10.45 51.08 1962 0.000 0.000 0.000 2.468 0.000 0.000 7.230 0.454 0.000 0.000 0.015 0.000 0.000 0.000 0.000 0.000 0.000 0.000 1.022 0.029 0.000 0.000 0.000 11.219 - 10.45 51.08 1963 0.000 0.000 0.000 2.480 0.000 0.000 7.391 0.456 0.000 0.000 0.016 0.000 0.000 0.000 0.000 0.000 0.000 0.000 1.026 0.029 0.000 0.000 0.000 11.397 - 10.45 51.08 1964 0.000 0.000 0.000 2.492 0.000 0.000 7.560 0.458 0.000 0.000 0.016 0.000 0.000 0.000 0.000 0.000 0.000 0.000 1.030 0.029 0.000 0.000 0.000 11.586 - 10.45 51.08 1965 0.000 0.000 0.000 2.506 0.000 0.000 7.706 0.461 0.000 0.000 0.017 0.000 0.000 0.000 0.000 0.000 0.000 0.000 1.036 0.029 0.000 0.000 0.000 11.755 - 10.45 51.08 1966 0.000 0.000 0.000 2.518 0.000 0.000 7.880 0.463 0.000 0.000 0.017 0.000 0.000 0.000 0.000 0.000 0.000 0.000 1.042 0.030 0.000 0.000 0.000 11.949 - 10.45 51.08 1967 0.000 0.000 0.000 2.527 0.000 0.000 8.017 0.464 0.000 0.000 0.018 0.000 0.000 0.000 0.000 0.000 0.000 0.000 1.045 0.030 0.000 0.000 0.000 12.101 - 10.45 51.08 1968 0.000 0.000 0.000 2.538 0.000 0.000 8.169 0.467 0.000 0.000 0.019 0.000 0.000 0.000 0.000 0.000 0.000 0.000 1.050 0.030 0.000 0.000 0.000 12.273 - 10.45 51.08 1969 0.000 0.000 0.000 2.547 0.000 0.000 8.316 0.468 0.000 0.000 0.019 0.000 0.000 0.000 0.000 0.000 0.000 0.000 1.053 0.030 0.000 0.000 0.000 12.433 - 10.45 51.08 1970 0.000 0.000 0.000 2.554 0.000 0.000 8.445 0.469 0.000 0.000 0.019 0.000 0.000 0.000 0.000 0.000 0.000 0.000 1.055 0.030 0.000 0.000 0.000 12.572 - 10.45 51.08 1971 0.000 0.000 0.000 2.563 0.000 0.000 8.604 0.471 0.000 0.000 0.020 0.000 0.000 0.000 0.000 0.000 0.000 0.000 1.059 0.030 0.000 0.000 0.000 12.747 - 10.45 51.08 1972 0.000 0.000 0.000 2.571 0.000 0.000 8.742 0.472 0.000 0.000 0.021 0.000 0.000 0.000 0.000 0.000 0.000 0.000 1.062 0.030 0.000 0.000 0.000 12.898 - 10.45 51.08 1973 0.000 0.000 0.000 2.577 0.000 0.000 8.866 0.473 0.000 0.000 0.022 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.828 0.031 0.000 0.000 0.000 12.797 - 10.45 51.08 1974 0.000 0.000 0.000 2.586 0.000 0.000 9.020 0.475 0.000 0.000 0.024 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.832 0.031 0.000 0.000 0.000 12.967 - 10.45 51.08 1975 0.000 0.000 0.000 2.590 0.000 0.000 9.133 0.476 0.000 0.000 0.025 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.833 0.031 0.000 0.000 0.000 13.088 - 10.45 51.08 1976 0.000 0.000 0.000 2.594 0.000 0.000 9.277 0.477 0.000 0.000 0.025 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.834 0.031 0.000 0.000 0.000 13.238 - 10.45 51.08 1977 0.000 0.000 0.000 2.600 0.000 0.000 9.411 0.478 0.000 0.000 0.026 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.837 0.031 0.000 0.000 0.000 13.384 - 10.45 51.08 1978 0.000 0.000 0.000 2.607 0.000 0.000 9.544 0.480 0.000 0.000 0.028 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.840 0.031 0.000 0.000 0.000 13.531 - 10.45 51.08 1979 0.000 0.000 0.000 2.612 0.000 0.000 9.656 0.482 0.000 0.000 0.030 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.843 0.032 0.000 0.000 0.000 13.654 - 10.45 51.08 1980 0.000 0.000 0.000 0.000 0.000 0.000 9.770 0.483 0.000 0.000 0.032 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.845 0.000 0.000 0.000 0.000 11.131 - 10.45 51.08 1981 0.000 0.000 0.000 0.000 0.000 0.000 9.937 0.486 0.000 0.000 0.034 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.729 0.000 0.000 0.000 0.000 11.186 - 10.45 51.08 1982 0.000 0.000 0.000 0.000 0.000 0.000 10.059 0.486 0.000 0.000 0.036 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.730 0.000 0.000 0.000 0.000 11.311 - 10.45 51.08 1983 0.000 0.000 0.000 0.000 0.000 0.000 10.226 0.488 0.000 0.000 0.038 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.732 0.000 0.000 0.000 0.000 11.483 - 10.45 51.08 1984 0.000 0.000 0.000 0.000 0.000 0.000 10.329 0.489 0.000 0.000 0.040 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.734 0.000 0.000 0.000 0.000 11.592 - 10.45 51.08 1985 0.000 0.000 0.000 0.000 0.000 0.000 10.506 0.491 0.000 0.000 0.042 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.737 0.000 0.000 0.000 0.000 11.776 - 10.45 51.08 1986 0.000 0.000 0.000 0.000 0.000 0.000 10.657 0.492 0.000 0.000 0.044 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.738 0.000 0.000 0.000 0.000 11.931 - 10.45 51.08 1987 0.000 0.000 0.000 0.000 0.000 0.000 10.804 0.494 0.000 0.000 0.046 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.741 0.000 0.000 0.000 0.000 12.085 - 10.45 51.08 1988 0.000 0.000 0.000 0.000 0.000 0.000 8.225 0.496 0.000 0.000 0.049 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.744 0.000 0.000 0.000 0.000 9.513 - 10.45 51.08 1989 0.000 0.000 0.000 0.000 0.000 0.000 8.431 0.499 0.000 0.000 0.056 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.749 0.000 0.000 0.000 0.000 9.734 - 10.45 51.08 1990 0.000 0.000 0.000 0.000 0.000 0.000 8.658 0.378 0.000 0.000 0.064 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.757 0.000 0.000 0.061 0.000 9.919 - 10.45 51.08 1991 0.000 0.000 0.000 0.000 0.000 0.000 8.834 0.381 0.000 0.000 0.071 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.763 0.000 0.000 0.041 0.000 10.091 - 10.45 51.08 1992 0.000 0.000 0.000 0.000 0.000 0.000 8.972 0.383 0.000 0.000 0.079 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.767 0.000 0.000 0.027 0.000 10.228 - 10.45 51.08 1993 0.000 0.000 0.000 0.000 0.000 0.000 9.159 0.386 0.000 0.000 0.086 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.773 0.000 0.000 0.018 0.000 10.421 - 10.45 51.08 1994 0.000 0.000 0.000 0.000 0.000 0.000 9.309 0.388 0.000 0.000 0.092 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.776 0.000 0.000 0.010 0.000 10.575 - 10.45 51.08 1995 0.000 0.000 0.000 0.000 0.000 0.000 9.444 0.390 0.000 0.000 0.098 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.779 0.000 0.000 0.005 0.000 10.716 - 10.45 51.08 1996 0.000 0.000 0.000 0.000 0.000 0.000 9.581 0.391 0.000 0.000 0.104 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.783 0.000 0.000 0.002 0.000 10.861 - 10.45 51.08 1997 0.000 0.000 0.000 0.000 0.000 0.000 9.742 0.394 0.000 0.000 0.113 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.787 0.000 0.000 0.001 0.000 11.037 - 10.45 51.08 1998 0.000 0.000 0.000 0.000 0.000 0.000 9.910 0.396 0.000 0.000 0.120 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.792 0.000 0.000 0.001 0.000 11.219 - 10.45 51.08 1999 0.000 0.000 0.000 0.000 0.000 0.000 10.089 0.398 0.000 0.000 0.129 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.797 0.000 0.000 0.000 0.000 11.414 - 10.45 51.08 2000 0.000 0.000 0.000 0.000 0.000 0.000 10.242 0.400 0.000 0.000 0.138 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.801 0.000 0.000 0.000 0.000 11.582 - 10.45 51.08 2001 0.000 0.000 0.000 0.000 0.000 0.000 10.406 0.402 0.000 0.000 0.144 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.804 0.000 0.000 0.000 0.000 11.756 - 10.45 51.08 2002 0.000 0.000 0.000 0.000 0.000 0.000 10.540 0.404 0.000 0.000 0.150 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.808 0.000 0.000 0.000 0.000 11.901 - 10.45 51.08 2003 0.000 0.000 0.000 0.000 0.000 0.000 10.690 0.405 0.000 0.000 0.158 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.809 0.000 0.000 0.000 0.000 12.062 - 10.45 51.08 2004 0.000 0.000 0.000 0.000 0.000 0.000 10.908 0.408 0.000 0.000 0.168 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.815 0.000 0.000 0.000 0.000 12.299 - 10.45 51.08 2005 0.000 0.000 0.000 0.000 0.000 0.000 11.100 0.410 0.000 0.000 0.178 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.819 0.000 0.000 0.000 0.000 12.507 - 10.45 51.08 2006 0.000 0.000 0.000 0.000 0.000 0.000 11.260 0.411 0.000 0.000 0.185 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.547 0.000 0.000 0.000 0.000 12.402 - 10.45 51.08 2007 0.000 0.000 0.000 0.000 0.000 0.000 11.436 0.275 0.000 0.000 0.203 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.551 0.000 0.000 0.000 0.000 12.464 - 10.45 51.08 2008 0.000 0.000 0.000 0.000 0.000 0.000 11.603 0.277 0.000 0.000 0.213 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.553 0.000 0.000 0.000 0.000 12.646 - 10.45 51.08 2009 0.000 0.000 0.000 0.000 0.000 0.000 11.772 0.278 0.000 0.000 0.223 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.556 0.000 0.000 0.000 0.000 12.829 - 10.45 51.08 2010 0.000 0.000 0.000 0.000 0.000 0.000 11.915 0.278 0.000 0.000 0.228 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.557 0.000 0.000 0.000 0.000 12.979 - 10.45 51.08 2011 0.000 0.000 0.000 0.000 0.000 0.000 12.132 0.280 0.000 0.000 0.244 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.561 0.000 0.000 0.000 0.000 13.217 - 10.45 51.08 2012 0.000 0.000 0.000 0.000 0.000 0.000 12.302 0.282 0.000 0.000 0.256 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.564 0.000 0.000 0.000 0.000 13.403 diff --git a/rLPJGUESS/inst/extdata/outputsForTests/standard/outDirectory/cpool.out b/rLPJGUESS/inst/extdata/outputsForTests/standard/outDirectory/cpool.out deleted file mode 100644 index 3c39f08..0000000 --- a/rLPJGUESS/inst/extdata/outputsForTests/standard/outDirectory/cpool.out +++ /dev/null @@ -1,63 +0,0 @@ - Lon Lat Year VegC LitterC SoilC Total - 10.45 51.08 1951 9.562 7.596 11.754 28.911 - 10.45 51.08 1952 9.750 7.361 11.754 28.865 - 10.45 51.08 1953 9.965 7.119 11.746 28.829 - 10.45 51.08 1954 10.114 6.951 11.746 28.811 - 10.45 51.08 1955 10.263 6.805 11.751 28.819 - 10.45 51.08 1956 10.426 6.670 11.757 28.853 - 10.45 51.08 1957 10.603 6.498 11.754 28.855 - 10.45 51.08 1958 10.759 6.340 11.750 28.849 - 10.45 51.08 1959 10.997 6.107 11.734 28.838 - 10.45 51.08 1960 10.860 6.279 11.729 28.868 - 10.45 51.08 1961 11.039 6.097 11.721 28.857 - 10.45 51.08 1962 11.219 5.963 11.717 28.899 - 10.45 51.08 1963 11.397 5.835 11.714 28.946 - 10.45 51.08 1964 11.586 5.678 11.703 28.968 - 10.45 51.08 1965 11.755 5.576 11.702 29.033 - 10.45 51.08 1966 11.949 5.454 11.698 29.101 - 10.45 51.08 1967 12.101 5.320 11.688 29.110 - 10.45 51.08 1968 12.273 5.199 11.680 29.152 - 10.45 51.08 1969 12.433 5.077 11.672 29.182 - 10.45 51.08 1970 12.572 4.978 11.667 29.216 - 10.45 51.08 1971 12.747 4.825 11.649 29.221 - 10.45 51.08 1972 12.898 4.750 11.646 29.294 - 10.45 51.08 1973 12.797 4.864 11.633 29.294 - 10.45 51.08 1974 12.967 4.762 11.625 29.354 - 10.45 51.08 1975 13.088 4.630 11.607 29.325 - 10.45 51.08 1976 13.238 4.487 11.584 29.309 - 10.45 51.08 1977 13.384 4.412 11.577 29.373 - 10.45 51.08 1978 13.531 4.322 11.569 29.422 - 10.45 51.08 1979 13.654 4.228 11.558 29.440 - 10.45 51.08 1980 11.131 6.784 11.546 29.461 - 10.45 51.08 1981 11.186 6.767 11.543 29.496 - 10.45 51.08 1982 11.311 6.521 11.526 29.359 - 10.45 51.08 1983 11.483 6.335 11.514 29.333 - 10.45 51.08 1984 11.592 6.227 11.516 29.335 - 10.45 51.08 1985 11.776 6.064 11.510 29.349 - 10.45 51.08 1986 11.931 5.926 11.503 29.360 - 10.45 51.08 1987 12.085 5.826 11.504 29.414 - 10.45 51.08 1988 9.513 8.391 11.489 29.394 - 10.45 51.08 1989 9.734 8.070 11.505 29.309 - 10.45 51.08 1990 9.919 7.921 11.512 29.351 - 10.45 51.08 1991 10.091 7.642 11.513 29.246 - 10.45 51.08 1992 10.228 7.367 11.527 29.122 - 10.45 51.08 1993 10.421 7.158 11.539 29.117 - 10.45 51.08 1994 10.575 6.927 11.542 29.044 - 10.45 51.08 1995 10.716 6.735 11.546 28.997 - 10.45 51.08 1996 10.861 6.600 11.554 29.015 - 10.45 51.08 1997 11.037 6.398 11.551 28.986 - 10.45 51.08 1998 11.219 6.223 11.546 28.988 - 10.45 51.08 1999 11.414 6.038 11.538 28.989 - 10.45 51.08 2000 11.582 5.858 11.527 28.966 - 10.45 51.08 2001 11.756 5.700 11.519 28.975 - 10.45 51.08 2002 11.901 5.567 11.515 28.984 - 10.45 51.08 2003 12.062 5.371 11.498 28.930 - 10.45 51.08 2004 12.299 5.229 11.486 29.013 - 10.45 51.08 2005 12.507 5.098 11.476 29.081 - 10.45 51.08 2006 12.402 5.234 11.463 29.099 - 10.45 51.08 2007 12.464 5.246 11.457 29.167 - 10.45 51.08 2008 12.646 5.095 11.444 29.185 - 10.45 51.08 2009 12.829 4.965 11.435 29.230 - 10.45 51.08 2010 12.979 4.867 11.433 29.278 - 10.45 51.08 2011 13.217 4.720 11.420 29.356 - 10.45 51.08 2012 13.403 4.599 11.407 29.410 diff --git a/rLPJGUESS/inst/extdata/outputsForTests/standard/outDirectory/cton_leaf.out b/rLPJGUESS/inst/extdata/outputsForTests/standard/outDirectory/cton_leaf.out deleted file mode 100644 index 8afb783..0000000 --- a/rLPJGUESS/inst/extdata/outputsForTests/standard/outDirectory/cton_leaf.out +++ /dev/null @@ -1,63 +0,0 @@ - Lon Lat Year Abi_alb BES Bet_pen Bet_pub Car_bet Cor_ave Fag_syl Fra_exc Jun_oxy MRS Pic_abi Pic_sit Pin_syl Pin_hal Pop_tre Que_coc Que_ile Que_pub Que_rob Til_cor Ulm_gla C3_gr C4_gr Total - 10.45 51.08 1951 0.0 0.0 0.0 23.6 23.6 0.0 23.6 23.6 0.0 0.0 56.4 0.0 0.0 0.0 0.0 0.0 0.0 0.0 23.6 23.6 0.0 0.0 0.0 23.8 - 10.45 51.08 1952 0.0 0.0 0.0 23.6 23.6 0.0 23.6 23.6 0.0 0.0 56.4 0.0 0.0 0.0 0.0 0.0 0.0 0.0 23.6 23.6 0.0 0.0 0.0 23.8 - 10.45 51.08 1953 0.0 0.0 0.0 23.6 23.6 0.0 23.6 23.6 0.0 0.0 56.4 0.0 0.0 0.0 0.0 0.0 0.0 0.0 23.6 23.6 0.0 0.0 0.0 23.8 - 10.45 51.08 1954 0.0 0.0 0.0 23.6 23.6 0.0 23.6 23.6 0.0 0.0 56.4 0.0 0.0 0.0 0.0 0.0 0.0 0.0 23.6 23.6 0.0 0.0 0.0 23.9 - 10.45 51.08 1955 0.0 0.0 0.0 23.6 23.6 0.0 23.6 23.6 0.0 0.0 56.4 0.0 0.0 0.0 0.0 0.0 0.0 0.0 23.6 23.6 0.0 0.0 0.0 23.9 - 10.45 51.08 1956 0.0 0.0 0.0 23.6 23.6 0.0 23.6 23.6 0.0 0.0 56.4 0.0 0.0 0.0 0.0 0.0 0.0 0.0 23.6 23.6 0.0 0.0 0.0 23.9 - 10.45 51.08 1957 0.0 0.0 0.0 23.6 23.6 0.0 23.6 23.6 0.0 0.0 56.4 0.0 0.0 0.0 0.0 0.0 0.0 0.0 23.6 23.6 0.0 0.0 0.0 23.9 - 10.45 51.08 1958 0.0 0.0 0.0 23.6 23.6 0.0 23.6 23.6 0.0 0.0 56.4 0.0 0.0 0.0 0.0 0.0 0.0 0.0 23.6 23.6 0.0 0.0 0.0 23.9 - 10.45 51.08 1959 0.0 0.0 0.0 23.6 23.6 0.0 23.6 23.6 0.0 0.0 56.4 0.0 0.0 0.0 0.0 0.0 0.0 0.0 23.6 23.6 0.0 0.0 0.0 23.9 - 10.45 51.08 1960 0.0 0.0 0.0 23.6 0.0 0.0 23.6 23.6 0.0 0.0 56.4 0.0 0.0 0.0 0.0 0.0 0.0 0.0 23.6 23.6 0.0 0.0 0.0 23.9 - 10.45 51.08 1961 0.0 0.0 0.0 23.6 0.0 0.0 23.6 23.6 0.0 0.0 56.4 0.0 0.0 0.0 0.0 0.0 0.0 0.0 23.6 23.6 0.0 0.0 0.0 23.9 - 10.45 51.08 1962 0.0 0.0 0.0 23.6 0.0 0.0 23.6 23.6 0.0 0.0 56.4 0.0 0.0 0.0 0.0 0.0 0.0 0.0 23.6 23.6 0.0 0.0 0.0 23.9 - 10.45 51.08 1963 0.0 0.0 0.0 23.6 0.0 0.0 23.6 23.6 0.0 0.0 56.4 0.0 0.0 0.0 0.0 0.0 0.0 0.0 23.6 23.6 0.0 0.0 0.0 23.9 - 10.45 51.08 1964 0.0 0.0 0.0 23.6 0.0 0.0 23.6 23.6 0.0 0.0 56.4 0.0 0.0 0.0 0.0 0.0 0.0 0.0 23.6 23.6 0.0 0.0 0.0 23.9 - 10.45 51.08 1965 0.0 0.0 0.0 23.6 0.0 0.0 23.6 23.6 0.0 0.0 56.4 0.0 0.0 0.0 0.0 0.0 0.0 0.0 23.6 23.6 0.0 0.0 0.0 23.9 - 10.45 51.08 1966 0.0 0.0 0.0 23.6 0.0 0.0 23.6 23.6 0.0 0.0 56.4 0.0 0.0 0.0 0.0 0.0 0.0 0.0 23.6 23.6 0.0 0.0 0.0 23.9 - 10.45 51.08 1967 0.0 0.0 0.0 23.6 0.0 0.0 23.6 23.6 0.0 0.0 56.4 0.0 0.0 0.0 0.0 0.0 0.0 0.0 23.6 23.6 0.0 0.0 0.0 23.9 - 10.45 51.08 1968 0.0 0.0 0.0 23.6 0.0 0.0 23.6 23.6 0.0 0.0 56.4 0.0 0.0 0.0 0.0 0.0 0.0 0.0 23.6 23.6 0.0 0.0 0.0 23.9 - 10.45 51.08 1969 0.0 0.0 0.0 23.6 0.0 0.0 23.6 23.6 0.0 0.0 56.4 0.0 0.0 0.0 0.0 0.0 0.0 0.0 23.6 23.6 0.0 0.0 0.0 23.9 - 10.45 51.08 1970 0.0 0.0 0.0 23.6 0.0 0.0 23.6 23.6 0.0 0.0 56.4 0.0 0.0 0.0 0.0 0.0 0.0 0.0 23.6 23.6 0.0 0.0 0.0 23.9 - 10.45 51.08 1971 0.0 0.0 0.0 23.6 0.0 0.0 23.6 23.6 0.0 0.0 56.4 0.0 0.0 0.0 0.0 0.0 0.0 0.0 23.6 23.6 0.0 0.0 0.0 24.0 - 10.45 51.08 1972 0.0 0.0 0.0 23.6 0.0 0.0 23.6 23.6 0.0 0.0 56.4 0.0 0.0 0.0 0.0 0.0 0.0 0.0 23.6 23.6 0.0 0.0 0.0 24.0 - 10.45 51.08 1973 0.0 0.0 0.0 23.6 0.0 0.0 23.6 23.6 0.0 0.0 56.4 0.0 0.0 0.0 0.0 0.0 0.0 0.0 23.6 23.6 0.0 0.0 0.0 24.0 - 10.45 51.08 1974 0.0 0.0 0.0 23.6 0.0 0.0 23.6 23.6 0.0 0.0 56.4 0.0 0.0 0.0 0.0 0.0 0.0 0.0 23.6 23.6 0.0 0.0 0.0 24.0 - 10.45 51.08 1975 0.0 0.0 0.0 23.6 0.0 0.0 23.6 23.6 0.0 0.0 56.4 0.0 0.0 0.0 0.0 0.0 0.0 0.0 23.6 23.6 0.0 0.0 0.0 24.1 - 10.45 51.08 1976 0.0 0.0 0.0 23.6 0.0 0.0 23.6 23.6 0.0 0.0 56.4 0.0 0.0 0.0 0.0 0.0 0.0 0.0 23.6 23.6 0.0 0.0 0.0 24.1 - 10.45 51.08 1977 0.0 0.0 0.0 23.6 0.0 0.0 23.6 23.6 0.0 0.0 56.4 0.0 0.0 0.0 0.0 0.0 0.0 0.0 23.6 23.6 0.0 0.0 0.0 24.1 - 10.45 51.08 1978 0.0 0.0 0.0 23.6 0.0 0.0 23.6 23.6 0.0 0.0 56.4 0.0 0.0 0.0 0.0 0.0 0.0 0.0 23.6 23.6 0.0 0.0 0.0 24.1 - 10.45 51.08 1979 0.0 0.0 0.0 23.6 0.0 0.0 23.6 23.6 0.0 0.0 56.4 0.0 0.0 0.0 0.0 0.0 0.0 0.0 23.6 23.6 0.0 0.0 0.0 24.2 - 10.45 51.08 1980 0.0 0.0 0.0 0.0 0.0 0.0 23.6 23.6 0.0 0.0 56.4 0.0 0.0 0.0 0.0 0.0 0.0 0.0 23.6 0.0 0.0 0.0 0.0 24.3 - 10.45 51.08 1981 0.0 0.0 0.0 0.0 0.0 0.0 23.6 23.6 0.0 0.0 56.4 0.0 0.0 0.0 0.0 0.0 0.0 0.0 23.6 0.0 0.0 0.0 0.0 24.3 - 10.45 51.08 1982 0.0 0.0 0.0 0.0 0.0 0.0 23.6 23.6 0.0 0.0 56.4 0.0 0.0 0.0 0.0 0.0 0.0 0.0 23.6 0.0 0.0 0.0 0.0 24.3 - 10.45 51.08 1983 0.0 0.0 0.0 0.0 0.0 0.0 23.6 23.6 0.0 0.0 56.4 0.0 0.0 0.0 0.0 0.0 0.0 0.0 23.6 0.0 0.0 0.0 0.0 24.3 - 10.45 51.08 1984 0.0 0.0 0.0 0.0 0.0 0.0 23.6 23.6 0.0 0.0 56.4 0.0 0.0 0.0 0.0 0.0 0.0 0.0 23.6 0.0 0.0 0.0 0.0 24.4 - 10.45 51.08 1985 0.0 0.0 0.0 0.0 0.0 0.0 23.6 23.6 0.0 0.0 56.4 0.0 0.0 0.0 0.0 0.0 0.0 0.0 23.6 0.0 0.0 0.0 0.0 24.4 - 10.45 51.08 1986 0.0 0.0 0.0 0.0 0.0 0.0 23.6 23.6 0.0 0.0 56.4 0.0 0.0 0.0 0.0 0.0 0.0 0.0 23.6 0.0 0.0 0.0 0.0 24.5 - 10.45 51.08 1987 0.0 0.0 0.0 0.0 0.0 0.0 23.6 23.6 0.0 0.0 56.4 0.0 0.0 0.0 0.0 0.0 0.0 0.0 23.6 0.0 0.0 0.0 0.0 24.5 - 10.45 51.08 1988 0.0 0.0 0.0 0.0 0.0 0.0 23.6 23.6 0.0 0.0 56.4 0.0 0.0 0.0 0.0 0.0 0.0 0.0 23.6 0.0 0.0 0.0 0.0 24.8 - 10.45 51.08 1989 0.0 0.0 0.0 0.0 0.0 0.0 23.6 23.6 0.0 0.0 56.4 0.0 0.0 0.0 0.0 0.0 0.0 0.0 23.6 0.0 0.0 0.0 0.0 25.0 - 10.45 51.08 1990 0.0 0.0 0.0 0.0 0.0 0.0 23.6 23.6 0.0 0.0 56.4 0.0 0.0 0.0 0.0 0.0 0.0 0.0 23.6 0.0 0.0 23.6 0.0 24.8 - 10.45 51.08 1991 0.0 0.0 0.0 0.0 0.0 0.0 23.6 23.6 0.0 0.0 56.4 0.0 0.0 0.0 0.0 0.0 0.0 0.0 23.6 0.0 0.0 23.6 0.0 25.0 - 10.45 51.08 1992 0.0 0.0 0.0 0.0 0.0 0.0 23.6 23.6 0.0 0.0 56.4 0.0 0.0 0.0 0.0 0.0 0.0 0.0 23.6 0.0 0.0 23.6 0.0 25.3 - 10.45 51.08 1993 0.0 0.0 0.0 0.0 0.0 0.0 23.6 23.6 0.0 0.0 56.4 0.0 0.0 0.0 0.0 0.0 0.0 0.0 23.6 0.0 0.0 23.6 0.0 25.4 - 10.45 51.08 1994 0.0 0.0 0.0 0.0 0.0 0.0 23.6 23.6 0.0 0.0 56.4 0.0 0.0 0.0 0.0 0.0 0.0 0.0 23.6 0.0 0.0 23.6 0.0 25.5 - 10.45 51.08 1995 0.0 0.0 0.0 0.0 0.0 0.0 23.6 23.6 0.0 0.0 56.4 0.0 0.0 0.0 0.0 0.0 0.0 0.0 23.6 0.0 0.0 23.6 0.0 25.7 - 10.45 51.08 1996 0.0 0.0 0.0 0.0 0.0 0.0 23.6 23.6 0.0 0.0 56.4 0.0 0.0 0.0 0.0 0.0 0.0 0.0 23.6 0.0 0.0 23.6 0.0 25.8 - 10.45 51.08 1997 0.0 0.0 0.0 0.0 0.0 0.0 23.6 23.6 0.0 0.0 56.4 0.0 0.0 0.0 0.0 0.0 0.0 0.0 23.6 0.0 0.0 23.6 0.0 25.9 - 10.45 51.08 1998 0.0 0.0 0.0 0.0 0.0 0.0 23.6 23.6 0.0 0.0 56.4 0.0 0.0 0.0 0.0 0.0 0.0 0.0 23.6 0.0 0.0 23.6 0.0 26.0 - 10.45 51.08 1999 0.0 0.0 0.0 0.0 0.0 0.0 23.6 23.6 0.0 0.0 56.4 0.0 0.0 0.0 0.0 0.0 0.0 0.0 23.6 0.0 0.0 23.6 0.0 26.1 - 10.45 51.08 2000 0.0 0.0 0.0 0.0 0.0 0.0 23.6 23.6 0.0 0.0 56.4 0.0 0.0 0.0 0.0 0.0 0.0 0.0 23.6 0.0 0.0 23.6 0.0 26.2 - 10.45 51.08 2001 0.0 0.0 0.0 0.0 0.0 0.0 23.6 23.6 0.0 0.0 56.4 0.0 0.0 0.0 0.0 0.0 0.0 0.0 23.6 0.0 0.0 23.6 0.0 26.2 - 10.45 51.08 2002 0.0 0.0 0.0 0.0 0.0 0.0 23.6 23.6 0.0 0.0 56.4 0.0 0.0 0.0 0.0 0.0 0.0 0.0 23.6 0.0 0.0 23.6 0.0 26.3 - 10.45 51.08 2003 0.0 0.0 0.0 0.0 0.0 0.0 23.6 23.6 0.0 0.0 56.4 0.0 0.0 0.0 0.0 0.0 0.0 0.0 23.6 0.0 0.0 23.6 0.0 26.4 - 10.45 51.08 2004 0.0 0.0 0.0 0.0 0.0 0.0 23.6 23.6 0.0 0.0 56.4 0.0 0.0 0.0 0.0 0.0 0.0 0.0 23.6 0.0 0.0 23.6 0.0 26.4 - 10.45 51.08 2005 0.0 0.0 0.0 0.0 0.0 0.0 23.6 23.6 0.0 0.0 56.4 0.0 0.0 0.0 0.0 0.0 0.0 0.0 23.6 0.0 0.0 23.6 0.0 26.5 - 10.45 51.08 2006 0.0 0.0 0.0 0.0 0.0 0.0 23.6 23.6 0.0 0.0 56.4 0.0 0.0 0.0 0.0 0.0 0.0 0.0 23.6 0.0 0.0 23.6 0.0 26.5 - 10.45 51.08 2007 0.0 0.0 0.0 0.0 0.0 0.0 23.6 23.6 0.0 0.0 56.4 0.0 0.0 0.0 0.0 0.0 0.0 0.0 23.6 0.0 0.0 23.6 0.0 26.8 - 10.45 51.08 2008 0.0 0.0 0.0 0.0 0.0 0.0 23.6 23.6 0.0 0.0 56.4 0.0 0.0 0.0 0.0 0.0 0.0 0.0 23.6 0.0 0.0 23.6 0.0 26.9 - 10.45 51.08 2009 0.0 0.0 0.0 0.0 0.0 0.0 23.6 23.6 0.0 0.0 56.4 0.0 0.0 0.0 0.0 0.0 0.0 0.0 23.6 0.0 0.0 0.0 0.0 26.9 - 10.45 51.08 2010 0.0 0.0 0.0 0.0 0.0 0.0 23.6 23.6 0.0 0.0 56.4 0.0 0.0 0.0 0.0 0.0 0.0 0.0 23.6 0.0 0.0 0.0 0.0 26.9 - 10.45 51.08 2011 0.0 0.0 0.0 0.0 0.0 0.0 23.6 23.6 0.0 0.0 56.4 0.0 0.0 0.0 0.0 0.0 0.0 0.0 23.6 0.0 0.0 0.0 0.0 27.0 - 10.45 51.08 2012 0.0 0.0 0.0 0.0 0.0 0.0 23.6 23.6 0.0 0.0 56.4 0.0 0.0 0.0 0.0 0.0 0.0 0.0 23.6 0.0 0.0 0.0 0.0 27.1 diff --git a/rLPJGUESS/inst/extdata/outputsForTests/standard/outDirectory/dens.out b/rLPJGUESS/inst/extdata/outputsForTests/standard/outDirectory/dens.out deleted file mode 100644 index 31ef811..0000000 --- a/rLPJGUESS/inst/extdata/outputsForTests/standard/outDirectory/dens.out +++ /dev/null @@ -1,63 +0,0 @@ - Lon Lat Year Abi_alb BES Bet_pen Bet_pub Car_bet Cor_ave Fag_syl Fra_exc Jun_oxy MRS Pic_abi Pic_sit Pin_syl Pin_hal Pop_tre Que_coc Que_ile Que_pub Que_rob Til_cor Ulm_gla C3_gr C4_gr Total - 10.45 51.08 1951 0.0000 0.0000 0.0000 0.0010 0.0010 0.0000 0.0040 0.0040 0.0000 0.0000 0.0020 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0110 0.0010 0.0000 0.0000 0.0000 0.0240 - 10.45 51.08 1952 0.0000 0.0000 0.0000 0.0010 0.0010 0.0000 0.0040 0.0040 0.0000 0.0000 0.0030 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0110 0.0010 0.0000 0.0000 0.0000 0.0250 - 10.45 51.08 1953 0.0000 0.0000 0.0000 0.0010 0.0010 0.0000 0.0040 0.0040 0.0000 0.0000 0.0030 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0110 0.0010 0.0000 0.0000 0.0000 0.0250 - 10.45 51.08 1954 0.0000 0.0000 0.0000 0.0010 0.0010 0.0000 0.0040 0.0040 0.0000 0.0000 0.0030 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0110 0.0010 0.0000 0.0000 0.0000 0.0250 - 10.45 51.08 1955 0.0000 0.0000 0.0000 0.0010 0.0010 0.0000 0.0040 0.0040 0.0000 0.0000 0.0030 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0110 0.0010 0.0000 0.0000 0.0000 0.0250 - 10.45 51.08 1956 0.0000 0.0000 0.0000 0.0010 0.0010 0.0000 0.0040 0.0040 0.0000 0.0000 0.0030 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0110 0.0010 0.0000 0.0000 0.0000 0.0250 - 10.45 51.08 1957 0.0000 0.0000 0.0000 0.0010 0.0010 0.0000 0.0040 0.0040 0.0000 0.0000 0.0030 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0110 0.0010 0.0000 0.0000 0.0000 0.0250 - 10.45 51.08 1958 0.0000 0.0000 0.0000 0.0010 0.0010 0.0000 0.0040 0.0040 0.0000 0.0000 0.0030 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0110 0.0010 0.0000 0.0000 0.0000 0.0250 - 10.45 51.08 1959 0.0000 0.0000 0.0000 0.0010 0.0010 0.0000 0.0040 0.0040 0.0000 0.0000 0.0030 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0110 0.0010 0.0000 0.0000 0.0000 0.0250 - 10.45 51.08 1960 0.0000 0.0000 0.0000 0.0010 0.0000 0.0000 0.0040 0.0040 0.0000 0.0000 0.0030 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0090 0.0010 0.0000 0.0000 0.0000 0.0220 - 10.45 51.08 1961 0.0000 0.0000 0.0000 0.0010 0.0000 0.0000 0.0040 0.0040 0.0000 0.0000 0.0030 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0090 0.0010 0.0000 0.0000 0.0000 0.0220 - 10.45 51.08 1962 0.0000 0.0000 0.0000 0.0010 0.0000 0.0000 0.0040 0.0040 0.0000 0.0000 0.0030 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0090 0.0010 0.0000 0.0000 0.0000 0.0220 - 10.45 51.08 1963 0.0000 0.0000 0.0000 0.0010 0.0000 0.0000 0.0040 0.0040 0.0000 0.0000 0.0040 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0090 0.0010 0.0000 0.0000 0.0000 0.0230 - 10.45 51.08 1964 0.0000 0.0000 0.0000 0.0010 0.0000 0.0000 0.0040 0.0040 0.0000 0.0000 0.0040 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0090 0.0010 0.0000 0.0000 0.0000 0.0230 - 10.45 51.08 1965 0.0000 0.0000 0.0000 0.0010 0.0000 0.0000 0.0040 0.0040 0.0000 0.0000 0.0040 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0090 0.0010 0.0000 0.0000 0.0000 0.0230 - 10.45 51.08 1966 0.0000 0.0000 0.0000 0.0010 0.0000 0.0000 0.0040 0.0040 0.0000 0.0000 0.0040 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0090 0.0010 0.0000 0.0000 0.0000 0.0230 - 10.45 51.08 1967 0.0000 0.0000 0.0000 0.0010 0.0000 0.0000 0.0040 0.0040 0.0000 0.0000 0.0040 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0090 0.0010 0.0000 0.0000 0.0000 0.0230 - 10.45 51.08 1968 0.0000 0.0000 0.0000 0.0010 0.0000 0.0000 0.0040 0.0040 0.0000 0.0000 0.0040 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0090 0.0010 0.0000 0.0000 0.0000 0.0230 - 10.45 51.08 1969 0.0000 0.0000 0.0000 0.0010 0.0000 0.0000 0.0040 0.0040 0.0000 0.0000 0.0050 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0090 0.0010 0.0000 0.0000 0.0000 0.0240 - 10.45 51.08 1970 0.0000 0.0000 0.0000 0.0010 0.0000 0.0000 0.0040 0.0040 0.0000 0.0000 0.0050 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0090 0.0010 0.0000 0.0000 0.0000 0.0240 - 10.45 51.08 1971 0.0000 0.0000 0.0000 0.0010 0.0000 0.0000 0.0040 0.0040 0.0000 0.0000 0.0050 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0090 0.0010 0.0000 0.0000 0.0000 0.0240 - 10.45 51.08 1972 0.0000 0.0000 0.0000 0.0010 0.0000 0.0000 0.0040 0.0040 0.0000 0.0000 0.0050 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0090 0.0010 0.0000 0.0000 0.0000 0.0240 - 10.45 51.08 1973 0.0000 0.0000 0.0000 0.0010 0.0000 0.0000 0.0040 0.0040 0.0000 0.0000 0.0060 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0070 0.0010 0.0000 0.0000 0.0000 0.0230 - 10.45 51.08 1974 0.0000 0.0000 0.0000 0.0010 0.0000 0.0000 0.0040 0.0040 0.0000 0.0000 0.0060 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0070 0.0010 0.0000 0.0000 0.0000 0.0230 - 10.45 51.08 1975 0.0000 0.0000 0.0000 0.0010 0.0000 0.0000 0.0040 0.0040 0.0000 0.0000 0.0060 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0070 0.0010 0.0000 0.0000 0.0000 0.0230 - 10.45 51.08 1976 0.0000 0.0000 0.0000 0.0010 0.0000 0.0000 0.0040 0.0040 0.0000 0.0000 0.0060 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0070 0.0010 0.0000 0.0000 0.0000 0.0230 - 10.45 51.08 1977 0.0000 0.0000 0.0000 0.0010 0.0000 0.0000 0.0040 0.0040 0.0000 0.0000 0.0060 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0070 0.0010 0.0000 0.0000 0.0000 0.0230 - 10.45 51.08 1978 0.0000 0.0000 0.0000 0.0010 0.0000 0.0000 0.0040 0.0040 0.0000 0.0000 0.0060 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0070 0.0010 0.0000 0.0000 0.0000 0.0230 - 10.45 51.08 1979 0.0000 0.0000 0.0000 0.0010 0.0000 0.0000 0.0040 0.0040 0.0000 0.0000 0.0060 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0070 0.0010 0.0000 0.0000 0.0000 0.0230 - 10.45 51.08 1980 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0040 0.0040 0.0000 0.0000 0.0060 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0070 0.0000 0.0000 0.0000 0.0000 0.0210 - 10.45 51.08 1981 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0040 0.0040 0.0000 0.0000 0.0060 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0060 0.0000 0.0000 0.0000 0.0000 0.0200 - 10.45 51.08 1982 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0050 0.0040 0.0000 0.0000 0.0060 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0060 0.0000 0.0000 0.0000 0.0000 0.0210 - 10.45 51.08 1983 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0050 0.0040 0.0000 0.0000 0.0060 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0060 0.0000 0.0000 0.0000 0.0000 0.0210 - 10.45 51.08 1984 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0050 0.0040 0.0000 0.0000 0.0060 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0060 0.0000 0.0000 0.0000 0.0000 0.0210 - 10.45 51.08 1985 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0050 0.0040 0.0000 0.0000 0.0060 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0060 0.0000 0.0000 0.0000 0.0000 0.0210 - 10.45 51.08 1986 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0050 0.0040 0.0000 0.0000 0.0060 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0060 0.0000 0.0000 0.0000 0.0000 0.0210 - 10.45 51.08 1987 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0050 0.0040 0.0000 0.0000 0.0060 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0060 0.0000 0.0000 0.0000 0.0000 0.0210 - 10.45 51.08 1988 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0040 0.0040 0.0000 0.0000 0.0060 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0060 0.0000 0.0000 0.0000 0.0000 0.0200 - 10.45 51.08 1989 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0040 0.0040 0.0000 0.0000 0.0060 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0060 0.0000 0.0000 0.0000 0.0000 0.0200 - 10.45 51.08 1990 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0040 0.0030 0.0000 0.0000 0.0070 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0060 0.0000 0.0000 0.0000 0.0000 0.0200 - 10.45 51.08 1991 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0040 0.0030 0.0000 0.0000 0.0080 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0060 0.0000 0.0000 0.0000 0.0000 0.0210 - 10.45 51.08 1992 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0040 0.0030 0.0000 0.0000 0.0090 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0060 0.0000 0.0000 0.0000 0.0000 0.0220 - 10.45 51.08 1993 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0040 0.0030 0.0000 0.0000 0.0100 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0060 0.0000 0.0000 0.0000 0.0000 0.0230 - 10.45 51.08 1994 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0040 0.0030 0.0000 0.0000 0.0100 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0060 0.0000 0.0000 0.0000 0.0000 0.0230 - 10.45 51.08 1995 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0040 0.0030 0.0000 0.0000 0.0110 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0060 0.0000 0.0000 0.0000 0.0000 0.0240 - 10.45 51.08 1996 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0050 0.0030 0.0000 0.0000 0.0110 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0060 0.0000 0.0000 0.0000 0.0000 0.0250 - 10.45 51.08 1997 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0070 0.0030 0.0000 0.0000 0.0110 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0060 0.0000 0.0000 0.0000 0.0000 0.0270 - 10.45 51.08 1998 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0080 0.0030 0.0000 0.0000 0.0110 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0060 0.0000 0.0000 0.0000 0.0000 0.0280 - 10.45 51.08 1999 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0090 0.0030 0.0000 0.0000 0.0120 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0060 0.0000 0.0000 0.0000 0.0000 0.0300 - 10.45 51.08 2000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0150 0.0030 0.0000 0.0000 0.0120 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0060 0.0000 0.0000 0.0000 0.0000 0.0360 - 10.45 51.08 2001 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0150 0.0030 0.0000 0.0000 0.0120 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0060 0.0000 0.0000 0.0000 0.0000 0.0360 - 10.45 51.08 2002 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0150 0.0030 0.0000 0.0000 0.0120 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0060 0.0000 0.0000 0.0000 0.0000 0.0360 - 10.45 51.08 2003 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0150 0.0030 0.0000 0.0000 0.0120 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0060 0.0000 0.0000 0.0000 0.0000 0.0360 - 10.45 51.08 2004 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0150 0.0030 0.0000 0.0000 0.0120 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0060 0.0000 0.0000 0.0000 0.0000 0.0360 - 10.45 51.08 2005 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0150 0.0030 0.0000 0.0000 0.0120 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0060 0.0000 0.0000 0.0000 0.0000 0.0360 - 10.45 51.08 2006 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0150 0.0030 0.0000 0.0000 0.0120 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0040 0.0000 0.0000 0.0000 0.0000 0.0340 - 10.45 51.08 2007 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0150 0.0020 0.0000 0.0000 0.0120 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0040 0.0000 0.0000 0.0000 0.0000 0.0330 - 10.45 51.08 2008 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0150 0.0020 0.0000 0.0000 0.0120 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0040 0.0000 0.0000 0.0000 0.0000 0.0330 - 10.45 51.08 2009 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0160 0.0020 0.0000 0.0000 0.0120 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0040 0.0000 0.0000 0.0000 0.0000 0.0340 - 10.45 51.08 2010 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0170 0.0020 0.0000 0.0000 0.0120 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0040 0.0000 0.0000 0.0000 0.0000 0.0350 - 10.45 51.08 2011 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0170 0.0020 0.0000 0.0000 0.0120 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0040 0.0000 0.0000 0.0000 0.0000 0.0350 - 10.45 51.08 2012 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0180 0.0020 0.0000 0.0000 0.0120 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0040 0.0000 0.0000 0.0000 0.0000 0.0360 diff --git a/rLPJGUESS/inst/extdata/outputsForTests/standard/outDirectory/firert.out b/rLPJGUESS/inst/extdata/outputsForTests/standard/outDirectory/firert.out deleted file mode 100644 index e34481e..0000000 --- a/rLPJGUESS/inst/extdata/outputsForTests/standard/outDirectory/firert.out +++ /dev/null @@ -1,63 +0,0 @@ - Lon Lat Year FireRT - 10.45 51.08 1951 1000.0 - 10.45 51.08 1952 246.1 - 10.45 51.08 1953 1000.0 - 10.45 51.08 1954 1000.0 - 10.45 51.08 1955 1000.0 - 10.45 51.08 1956 1000.0 - 10.45 51.08 1957 1000.0 - 10.45 51.08 1958 1000.0 - 10.45 51.08 1959 156.2 - 10.45 51.08 1960 1000.0 - 10.45 51.08 1961 1000.0 - 10.45 51.08 1962 1000.0 - 10.45 51.08 1963 1000.0 - 10.45 51.08 1964 1000.0 - 10.45 51.08 1965 1000.0 - 10.45 51.08 1966 1000.0 - 10.45 51.08 1967 1000.0 - 10.45 51.08 1968 1000.0 - 10.45 51.08 1969 456.9 - 10.45 51.08 1970 1000.0 - 10.45 51.08 1971 303.9 - 10.45 51.08 1972 1000.0 - 10.45 51.08 1973 1000.0 - 10.45 51.08 1974 1000.0 - 10.45 51.08 1975 834.0 - 10.45 51.08 1976 390.7 - 10.45 51.08 1977 1000.0 - 10.45 51.08 1978 1000.0 - 10.45 51.08 1979 1000.0 - 10.45 51.08 1980 1000.0 - 10.45 51.08 1981 1000.0 - 10.45 51.08 1982 365.1 - 10.45 51.08 1983 1000.0 - 10.45 51.08 1984 1000.0 - 10.45 51.08 1985 1000.0 - 10.45 51.08 1986 1000.0 - 10.45 51.08 1987 1000.0 - 10.45 51.08 1988 1000.0 - 10.45 51.08 1989 1000.0 - 10.45 51.08 1990 1000.0 - 10.45 51.08 1991 174.7 - 10.45 51.08 1992 570.9 - 10.45 51.08 1993 855.5 - 10.45 51.08 1994 1000.0 - 10.45 51.08 1995 1000.0 - 10.45 51.08 1996 1000.0 - 10.45 51.08 1997 1000.0 - 10.45 51.08 1998 1000.0 - 10.45 51.08 1999 1000.0 - 10.45 51.08 2000 1000.0 - 10.45 51.08 2001 1000.0 - 10.45 51.08 2002 1000.0 - 10.45 51.08 2003 318.1 - 10.45 51.08 2004 1000.0 - 10.45 51.08 2005 1000.0 - 10.45 51.08 2006 1000.0 - 10.45 51.08 2007 1000.0 - 10.45 51.08 2008 1000.0 - 10.45 51.08 2009 1000.0 - 10.45 51.08 2010 1000.0 - 10.45 51.08 2011 566.0 - 10.45 51.08 2012 1000.0 diff --git a/rLPJGUESS/inst/extdata/outputsForTests/standard/outDirectory/fpc.out b/rLPJGUESS/inst/extdata/outputsForTests/standard/outDirectory/fpc.out deleted file mode 100644 index ac1cd1e..0000000 --- a/rLPJGUESS/inst/extdata/outputsForTests/standard/outDirectory/fpc.out +++ /dev/null @@ -1,63 +0,0 @@ - Lon Lat Year Abi_alb BES Bet_pen Bet_pub Car_bet Cor_ave Fag_syl Fra_exc Jun_oxy MRS Pic_abi Pic_sit Pin_syl Pin_hal Pop_tre Que_coc Que_ile Que_pub Que_rob Til_cor Ulm_gla C3_gr C4_gr Total - 10.45 51.08 1951 0.000 0.000 0.000 0.036 0.007 0.000 0.160 0.036 0.000 0.000 0.004 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.100 0.003 0.000 0.000 0.000 0.346 - 10.45 51.08 1952 0.000 0.000 0.000 0.036 0.007 0.000 0.160 0.036 0.000 0.000 0.004 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.099 0.003 0.000 0.000 0.000 0.344 - 10.45 51.08 1953 0.000 0.000 0.000 0.036 0.007 0.000 0.160 0.036 0.000 0.000 0.004 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.100 0.003 0.000 0.000 0.000 0.345 - 10.45 51.08 1954 0.000 0.000 0.000 0.036 0.007 0.000 0.160 0.035 0.000 0.000 0.004 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.097 0.003 0.000 0.000 0.000 0.342 - 10.45 51.08 1955 0.000 0.000 0.000 0.035 0.006 0.000 0.160 0.035 0.000 0.000 0.004 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.096 0.003 0.000 0.000 0.000 0.340 - 10.45 51.08 1956 0.000 0.000 0.000 0.035 0.006 0.000 0.160 0.034 0.000 0.000 0.004 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.095 0.003 0.000 0.000 0.000 0.338 - 10.45 51.08 1957 0.000 0.000 0.000 0.035 0.006 0.000 0.160 0.034 0.000 0.000 0.004 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.093 0.003 0.000 0.000 0.000 0.336 - 10.45 51.08 1958 0.000 0.000 0.000 0.035 0.006 0.000 0.160 0.033 0.000 0.000 0.004 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.091 0.003 0.000 0.000 0.000 0.332 - 10.45 51.08 1959 0.000 0.000 0.000 0.035 0.006 0.000 0.160 0.033 0.000 0.000 0.004 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.091 0.003 0.000 0.000 0.000 0.332 - 10.45 51.08 1960 0.000 0.000 0.000 0.034 0.000 0.000 0.160 0.032 0.000 0.000 0.004 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.073 0.003 0.000 0.000 0.000 0.307 - 10.45 51.08 1961 0.000 0.000 0.000 0.034 0.000 0.000 0.160 0.032 0.000 0.000 0.005 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.072 0.003 0.000 0.000 0.000 0.306 - 10.45 51.08 1962 0.000 0.000 0.000 0.034 0.000 0.000 0.160 0.032 0.000 0.000 0.005 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.071 0.003 0.000 0.000 0.000 0.305 - 10.45 51.08 1963 0.000 0.000 0.000 0.033 0.000 0.000 0.160 0.031 0.000 0.000 0.005 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.069 0.003 0.000 0.000 0.000 0.301 - 10.45 51.08 1964 0.000 0.000 0.000 0.033 0.000 0.000 0.160 0.030 0.000 0.000 0.005 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.068 0.003 0.000 0.000 0.000 0.299 - 10.45 51.08 1965 0.000 0.000 0.000 0.033 0.000 0.000 0.160 0.030 0.000 0.000 0.005 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.067 0.003 0.000 0.000 0.000 0.298 - 10.45 51.08 1966 0.000 0.000 0.000 0.032 0.000 0.000 0.160 0.030 0.000 0.000 0.005 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.066 0.003 0.000 0.000 0.000 0.297 - 10.45 51.08 1967 0.000 0.000 0.000 0.032 0.000 0.000 0.160 0.029 0.000 0.000 0.005 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.064 0.003 0.000 0.000 0.000 0.293 - 10.45 51.08 1968 0.000 0.000 0.000 0.031 0.000 0.000 0.160 0.028 0.000 0.000 0.006 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.063 0.003 0.000 0.000 0.000 0.291 - 10.45 51.08 1969 0.000 0.000 0.000 0.031 0.000 0.000 0.160 0.027 0.000 0.000 0.006 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.061 0.003 0.000 0.000 0.000 0.288 - 10.45 51.08 1970 0.000 0.000 0.000 0.030 0.000 0.000 0.160 0.026 0.000 0.000 0.006 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.059 0.003 0.000 0.000 0.000 0.284 - 10.45 51.08 1971 0.000 0.000 0.000 0.030 0.000 0.000 0.160 0.026 0.000 0.000 0.006 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.058 0.003 0.000 0.000 0.000 0.282 - 10.45 51.08 1972 0.000 0.000 0.000 0.029 0.000 0.000 0.160 0.025 0.000 0.000 0.006 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.056 0.003 0.000 0.000 0.000 0.279 - 10.45 51.08 1973 0.000 0.000 0.000 0.028 0.000 0.000 0.160 0.024 0.000 0.000 0.006 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.042 0.003 0.000 0.000 0.000 0.264 - 10.45 51.08 1974 0.000 0.000 0.000 0.028 0.000 0.000 0.160 0.024 0.000 0.000 0.007 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.042 0.003 0.000 0.000 0.000 0.264 - 10.45 51.08 1975 0.000 0.000 0.000 0.027 0.000 0.000 0.160 0.023 0.000 0.000 0.007 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.040 0.003 0.000 0.000 0.000 0.260 - 10.45 51.08 1976 0.000 0.000 0.000 0.026 0.000 0.000 0.160 0.022 0.000 0.000 0.007 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.039 0.003 0.000 0.000 0.000 0.256 - 10.45 51.08 1977 0.000 0.000 0.000 0.025 0.000 0.000 0.160 0.022 0.000 0.000 0.007 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.038 0.003 0.000 0.000 0.000 0.255 - 10.45 51.08 1978 0.000 0.000 0.000 0.025 0.000 0.000 0.160 0.021 0.000 0.000 0.008 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.038 0.003 0.000 0.000 0.000 0.255 - 10.45 51.08 1979 0.000 0.000 0.000 0.024 0.000 0.000 0.160 0.021 0.000 0.000 0.008 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.037 0.003 0.000 0.000 0.000 0.254 - 10.45 51.08 1980 0.000 0.000 0.000 0.000 0.000 0.000 0.160 0.021 0.000 0.000 0.009 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.036 0.000 0.000 0.000 0.000 0.226 - 10.45 51.08 1981 0.000 0.000 0.000 0.000 0.000 0.000 0.160 0.021 0.000 0.000 0.009 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.032 0.000 0.000 0.000 0.000 0.223 - 10.45 51.08 1982 0.000 0.000 0.000 0.000 0.000 0.000 0.161 0.020 0.000 0.000 0.010 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.030 0.000 0.000 0.000 0.000 0.221 - 10.45 51.08 1983 0.000 0.000 0.000 0.000 0.000 0.000 0.161 0.020 0.000 0.000 0.010 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.030 0.000 0.000 0.000 0.000 0.220 - 10.45 51.08 1984 0.000 0.000 0.000 0.000 0.000 0.000 0.161 0.019 0.000 0.000 0.011 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.029 0.000 0.000 0.000 0.000 0.220 - 10.45 51.08 1985 0.000 0.000 0.000 0.000 0.000 0.000 0.161 0.019 0.000 0.000 0.011 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.029 0.000 0.000 0.000 0.000 0.220 - 10.45 51.08 1986 0.000 0.000 0.000 0.000 0.000 0.000 0.161 0.019 0.000 0.000 0.011 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.028 0.000 0.000 0.000 0.000 0.220 - 10.45 51.08 1987 0.000 0.000 0.000 0.000 0.000 0.000 0.161 0.019 0.000 0.000 0.012 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.028 0.000 0.000 0.000 0.000 0.220 - 10.45 51.08 1988 0.000 0.000 0.000 0.000 0.000 0.000 0.121 0.019 0.000 0.000 0.013 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.028 0.000 0.000 0.000 0.000 0.181 - 10.45 51.08 1989 0.000 0.000 0.000 0.000 0.000 0.000 0.122 0.020 0.000 0.000 0.014 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.030 0.000 0.000 0.000 0.000 0.185 - 10.45 51.08 1990 0.000 0.000 0.000 0.000 0.000 0.000 0.123 0.016 0.000 0.000 0.016 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.032 0.000 0.000 0.233 0.000 0.420 - 10.45 51.08 1991 0.000 0.000 0.000 0.000 0.000 0.000 0.124 0.017 0.000 0.000 0.017 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.034 0.000 0.000 0.162 0.000 0.355 - 10.45 51.08 1992 0.000 0.000 0.000 0.000 0.000 0.000 0.125 0.017 0.000 0.000 0.019 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.034 0.000 0.000 0.109 0.000 0.304 - 10.45 51.08 1993 0.000 0.000 0.000 0.000 0.000 0.000 0.126 0.018 0.000 0.000 0.020 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.035 0.000 0.000 0.075 0.000 0.274 - 10.45 51.08 1994 0.000 0.000 0.000 0.000 0.000 0.000 0.127 0.018 0.000 0.000 0.021 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.036 0.000 0.000 0.041 0.000 0.243 - 10.45 51.08 1995 0.000 0.000 0.000 0.000 0.000 0.000 0.128 0.017 0.000 0.000 0.022 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.035 0.000 0.000 0.020 0.000 0.222 - 10.45 51.08 1996 0.000 0.000 0.000 0.000 0.000 0.000 0.129 0.018 0.000 0.000 0.023 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.035 0.000 0.000 0.008 0.000 0.213 - 10.45 51.08 1997 0.000 0.000 0.000 0.000 0.000 0.000 0.131 0.018 0.000 0.000 0.024 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.035 0.000 0.000 0.006 0.000 0.214 - 10.45 51.08 1998 0.000 0.000 0.000 0.000 0.000 0.000 0.132 0.018 0.000 0.000 0.025 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.036 0.000 0.000 0.003 0.000 0.215 - 10.45 51.08 1999 0.000 0.000 0.000 0.000 0.000 0.000 0.134 0.018 0.000 0.000 0.027 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.036 0.000 0.000 0.002 0.000 0.217 - 10.45 51.08 2000 0.000 0.000 0.000 0.000 0.000 0.000 0.136 0.018 0.000 0.000 0.028 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.036 0.000 0.000 0.001 0.000 0.219 - 10.45 51.08 2001 0.000 0.000 0.000 0.000 0.000 0.000 0.137 0.018 0.000 0.000 0.029 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.036 0.000 0.000 0.000 0.000 0.221 - 10.45 51.08 2002 0.000 0.000 0.000 0.000 0.000 0.000 0.139 0.018 0.000 0.000 0.030 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.036 0.000 0.000 0.000 0.000 0.223 - 10.45 51.08 2003 0.000 0.000 0.000 0.000 0.000 0.000 0.140 0.018 0.000 0.000 0.031 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.035 0.000 0.000 0.000 0.000 0.223 - 10.45 51.08 2004 0.000 0.000 0.000 0.000 0.000 0.000 0.143 0.018 0.000 0.000 0.032 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.036 0.000 0.000 0.000 0.000 0.229 - 10.45 51.08 2005 0.000 0.000 0.000 0.000 0.000 0.000 0.145 0.018 0.000 0.000 0.034 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.036 0.000 0.000 0.000 0.000 0.233 - 10.45 51.08 2006 0.000 0.000 0.000 0.000 0.000 0.000 0.146 0.018 0.000 0.000 0.035 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.023 0.000 0.000 0.000 0.000 0.222 - 10.45 51.08 2007 0.000 0.000 0.000 0.000 0.000 0.000 0.149 0.012 0.000 0.000 0.037 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.024 0.000 0.000 0.000 0.000 0.222 - 10.45 51.08 2008 0.000 0.000 0.000 0.000 0.000 0.000 0.151 0.012 0.000 0.000 0.038 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.024 0.000 0.000 0.000 0.000 0.225 - 10.45 51.08 2009 0.000 0.000 0.000 0.000 0.000 0.000 0.154 0.012 0.000 0.000 0.040 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.024 0.000 0.000 0.000 0.000 0.229 - 10.45 51.08 2010 0.000 0.000 0.000 0.000 0.000 0.000 0.155 0.012 0.000 0.000 0.040 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.023 0.000 0.000 0.000 0.000 0.229 - 10.45 51.08 2011 0.000 0.000 0.000 0.000 0.000 0.000 0.158 0.012 0.000 0.000 0.042 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.024 0.000 0.000 0.000 0.000 0.236 - 10.45 51.08 2012 0.000 0.000 0.000 0.000 0.000 0.000 0.162 0.012 0.000 0.000 0.044 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.024 0.000 0.000 0.000 0.000 0.241 diff --git a/rLPJGUESS/inst/extdata/outputsForTests/standard/outDirectory/lai.out b/rLPJGUESS/inst/extdata/outputsForTests/standard/outDirectory/lai.out deleted file mode 100644 index 0ef2296..0000000 --- a/rLPJGUESS/inst/extdata/outputsForTests/standard/outDirectory/lai.out +++ /dev/null @@ -1,63 +0,0 @@ - Lon Lat Year Abi_alb BES Bet_pen Bet_pub Car_bet Cor_ave Fag_syl Fra_exc Jun_oxy MRS Pic_abi Pic_sit Pin_syl Pin_hal Pop_tre Que_coc Que_ile Que_pub Que_rob Til_cor Ulm_gla C3_gr C4_gr Total - 10.45 51.08 1951 0.0000 0.0000 0.0000 0.1892 0.0171 0.0000 1.9880 0.0951 0.0000 0.0000 0.0139 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.2615 0.0083 0.0000 0.0000 0.0000 2.5731 - 10.45 51.08 1952 0.0000 0.0000 0.0000 0.1869 0.0168 0.0000 2.0150 0.0933 0.0000 0.0000 0.0139 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.2565 0.0082 0.0000 0.0000 0.0000 2.5906 - 10.45 51.08 1953 0.0000 0.0000 0.0000 0.1844 0.0170 0.0000 2.0560 0.0938 0.0000 0.0000 0.0147 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.2579 0.0084 0.0000 0.0000 0.0000 2.6322 - 10.45 51.08 1954 0.0000 0.0000 0.0000 0.1776 0.0164 0.0000 2.0551 0.0909 0.0000 0.0000 0.0156 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.2500 0.0082 0.0000 0.0000 0.0000 2.6139 - 10.45 51.08 1955 0.0000 0.0000 0.0000 0.1733 0.0161 0.0000 2.0513 0.0891 0.0000 0.0000 0.0158 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.2449 0.0081 0.0000 0.0000 0.0000 2.5985 - 10.45 51.08 1956 0.0000 0.0000 0.0000 0.1683 0.0159 0.0000 2.0581 0.0874 0.0000 0.0000 0.0165 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.2405 0.0080 0.0000 0.0000 0.0000 2.5947 - 10.45 51.08 1957 0.0000 0.0000 0.0000 0.1663 0.0156 0.0000 2.0718 0.0858 0.0000 0.0000 0.0169 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.2360 0.0080 0.0000 0.0000 0.0000 2.6003 - 10.45 51.08 1958 0.0000 0.0000 0.0000 0.1602 0.0151 0.0000 2.0772 0.0829 0.0000 0.0000 0.0166 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.2281 0.0078 0.0000 0.0000 0.0000 2.5878 - 10.45 51.08 1959 0.0000 0.0000 0.0000 0.1591 0.0150 0.0000 2.1327 0.0826 0.0000 0.0000 0.0171 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.2271 0.0078 0.0000 0.0000 0.0000 2.6414 - 10.45 51.08 1960 0.0000 0.0000 0.0000 0.1552 0.0000 0.0000 2.1372 0.0802 0.0000 0.0000 0.0177 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.1805 0.0076 0.0000 0.0000 0.0000 2.5786 - 10.45 51.08 1961 0.0000 0.0000 0.0000 0.1521 0.0000 0.0000 2.1498 0.0794 0.0000 0.0000 0.0182 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.1786 0.0077 0.0000 0.0000 0.0000 2.5857 - 10.45 51.08 1962 0.0000 0.0000 0.0000 0.1491 0.0000 0.0000 2.1634 0.0782 0.0000 0.0000 0.0188 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.1760 0.0077 0.0000 0.0000 0.0000 2.5932 - 10.45 51.08 1963 0.0000 0.0000 0.0000 0.1435 0.0000 0.0000 2.1802 0.0755 0.0000 0.0000 0.0190 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.1698 0.0075 0.0000 0.0000 0.0000 2.5955 - 10.45 51.08 1964 0.0000 0.0000 0.0000 0.1393 0.0000 0.0000 2.2013 0.0734 0.0000 0.0000 0.0190 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.1652 0.0074 0.0000 0.0000 0.0000 2.6055 - 10.45 51.08 1965 0.0000 0.0000 0.0000 0.1358 0.0000 0.0000 2.2041 0.0724 0.0000 0.0000 0.0201 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.1630 0.0074 0.0000 0.0000 0.0000 2.6029 - 10.45 51.08 1966 0.0000 0.0000 0.0000 0.1317 0.0000 0.0000 2.2268 0.0714 0.0000 0.0000 0.0205 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.1607 0.0073 0.0000 0.0000 0.0000 2.6184 - 10.45 51.08 1967 0.0000 0.0000 0.0000 0.1261 0.0000 0.0000 2.2216 0.0686 0.0000 0.0000 0.0215 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.1543 0.0071 0.0000 0.0000 0.0000 2.5993 - 10.45 51.08 1968 0.0000 0.0000 0.0000 0.1226 0.0000 0.0000 2.2268 0.0673 0.0000 0.0000 0.0221 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.1515 0.0071 0.0000 0.0000 0.0000 2.5974 - 10.45 51.08 1969 0.0000 0.0000 0.0000 0.1176 0.0000 0.0000 2.2273 0.0648 0.0000 0.0000 0.0218 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.1459 0.0069 0.0000 0.0000 0.0000 2.5843 - 10.45 51.08 1970 0.0000 0.0000 0.0000 0.1113 0.0000 0.0000 2.2150 0.0617 0.0000 0.0000 0.0217 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.1388 0.0066 0.0000 0.0000 0.0000 2.5551 - 10.45 51.08 1971 0.0000 0.0000 0.0000 0.1075 0.0000 0.0000 2.2246 0.0602 0.0000 0.0000 0.0228 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.1355 0.0066 0.0000 0.0000 0.0000 2.5572 - 10.45 51.08 1972 0.0000 0.0000 0.0000 0.1033 0.0000 0.0000 2.2181 0.0584 0.0000 0.0000 0.0241 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.1313 0.0064 0.0000 0.0000 0.0000 2.5417 - 10.45 51.08 1973 0.0000 0.0000 0.0000 0.0976 0.0000 0.0000 2.2024 0.0561 0.0000 0.0000 0.0254 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0982 0.0063 0.0000 0.0000 0.0000 2.4859 - 10.45 51.08 1974 0.0000 0.0000 0.0000 0.0947 0.0000 0.0000 2.2077 0.0557 0.0000 0.0000 0.0271 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0974 0.0063 0.0000 0.0000 0.0000 2.4889 - 10.45 51.08 1975 0.0000 0.0000 0.0000 0.0889 0.0000 0.0000 2.1837 0.0532 0.0000 0.0000 0.0285 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0931 0.0061 0.0000 0.0000 0.0000 2.4534 - 10.45 51.08 1976 0.0000 0.0000 0.0000 0.0837 0.0000 0.0000 2.1825 0.0503 0.0000 0.0000 0.0288 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0880 0.0058 0.0000 0.0000 0.0000 2.4391 - 10.45 51.08 1977 0.0000 0.0000 0.0000 0.0803 0.0000 0.0000 2.1741 0.0496 0.0000 0.0000 0.0300 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0867 0.0058 0.0000 0.0000 0.0000 2.4265 - 10.45 51.08 1978 0.0000 0.0000 0.0000 0.0772 0.0000 0.0000 2.1657 0.0489 0.0000 0.0000 0.0321 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0855 0.0058 0.0000 0.0000 0.0000 2.4153 - 10.45 51.08 1979 0.0000 0.0000 0.0000 0.0738 0.0000 0.0000 2.1417 0.0482 0.0000 0.0000 0.0346 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0843 0.0058 0.0000 0.0000 0.0000 2.3884 - 10.45 51.08 1980 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 2.1213 0.0469 0.0000 0.0000 0.0379 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0821 0.0000 0.0000 0.0000 0.0000 2.2882 - 10.45 51.08 1981 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 2.1381 0.0479 0.0000 0.0000 0.0394 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0718 0.0000 0.0000 0.0000 0.0000 2.2972 - 10.45 51.08 1982 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 2.1221 0.0455 0.0000 0.0000 0.0422 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0683 0.0000 0.0000 0.0000 0.0000 2.2781 - 10.45 51.08 1983 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 2.1385 0.0446 0.0000 0.0000 0.0435 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0669 0.0000 0.0000 0.0000 0.0000 2.2935 - 10.45 51.08 1984 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 2.1096 0.0435 0.0000 0.0000 0.0462 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0653 0.0000 0.0000 0.0000 0.0000 2.2646 - 10.45 51.08 1985 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 2.1329 0.0434 0.0000 0.0000 0.0486 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0651 0.0000 0.0000 0.0000 0.0000 2.2899 - 10.45 51.08 1986 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 2.1365 0.0420 0.0000 0.0000 0.0505 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0630 0.0000 0.0000 0.0000 0.0000 2.2921 - 10.45 51.08 1987 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 2.1370 0.0419 0.0000 0.0000 0.0532 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0628 0.0000 0.0000 0.0000 0.0000 2.2950 - 10.45 51.08 1988 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 1.6130 0.0417 0.0000 0.0000 0.0568 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0626 0.0000 0.0000 0.0000 0.0000 1.7741 - 10.45 51.08 1989 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 1.6793 0.0442 0.0000 0.0000 0.0654 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0663 0.0000 0.0000 0.0000 0.0000 1.8551 - 10.45 51.08 1990 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 1.7573 0.0368 0.0000 0.0000 0.0776 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0737 0.0000 0.0000 0.5307 0.0000 2.4760 - 10.45 51.08 1991 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 1.7987 0.0387 0.0000 0.0000 0.0867 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0774 0.0000 0.0000 0.3541 0.0000 2.3557 - 10.45 51.08 1992 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 1.8095 0.0391 0.0000 0.0000 0.0966 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0782 0.0000 0.0000 0.2306 0.0000 2.2540 - 10.45 51.08 1993 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 1.8532 0.0405 0.0000 0.0000 0.1032 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0811 0.0000 0.0000 0.1555 0.0000 2.2336 - 10.45 51.08 1994 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 1.8696 0.0407 0.0000 0.0000 0.1102 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0814 0.0000 0.0000 0.0842 0.0000 2.1862 - 10.45 51.08 1995 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 1.8749 0.0399 0.0000 0.0000 0.1155 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0798 0.0000 0.0000 0.0398 0.0000 2.1500 - 10.45 51.08 1996 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 1.8817 0.0400 0.0000 0.0000 0.1201 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0800 0.0000 0.0000 0.0164 0.0000 2.1382 - 10.45 51.08 1997 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 1.9054 0.0404 0.0000 0.0000 0.1303 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0809 0.0000 0.0000 0.0124 0.0000 2.1694 - 10.45 51.08 1998 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 1.9328 0.0412 0.0000 0.0000 0.1365 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0824 0.0000 0.0000 0.0065 0.0000 2.1994 - 10.45 51.08 1999 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 1.9674 0.0419 0.0000 0.0000 0.1441 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0838 0.0000 0.0000 0.0039 0.0000 2.2410 - 10.45 51.08 2000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 1.9821 0.0418 0.0000 0.0000 0.1532 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0836 0.0000 0.0000 0.0014 0.0000 2.2621 - 10.45 51.08 2001 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 2.0019 0.0416 0.0000 0.0000 0.1563 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0831 0.0000 0.0000 0.0007 0.0000 2.2836 - 10.45 51.08 2002 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 2.0019 0.0413 0.0000 0.0000 0.1604 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0826 0.0000 0.0000 0.0002 0.0000 2.2865 - 10.45 51.08 2003 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 2.0111 0.0399 0.0000 0.0000 0.1653 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0799 0.0000 0.0000 0.0001 0.0000 2.2964 - 10.45 51.08 2004 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 2.0703 0.0414 0.0000 0.0000 0.1742 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0829 0.0000 0.0000 0.0001 0.0000 2.3689 - 10.45 51.08 2005 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 2.1070 0.0415 0.0000 0.0000 0.1817 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0831 0.0000 0.0000 0.0000 0.0000 2.4133 - 10.45 51.08 2006 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 2.1173 0.0401 0.0000 0.0000 0.1848 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0534 0.0000 0.0000 0.0000 0.0000 2.3956 - 10.45 51.08 2007 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 2.1422 0.0274 0.0000 0.0000 0.2031 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0547 0.0000 0.0000 0.0000 0.0000 2.4273 - 10.45 51.08 2008 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 2.1596 0.0274 0.0000 0.0000 0.2101 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0547 0.0000 0.0000 0.0000 0.0000 2.4518 - 10.45 51.08 2009 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 2.1791 0.0274 0.0000 0.0000 0.2165 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0548 0.0000 0.0000 0.0000 0.0000 2.4779 - 10.45 51.08 2010 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 2.1728 0.0263 0.0000 0.0000 0.2152 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0526 0.0000 0.0000 0.0000 0.0000 2.4669 - 10.45 51.08 2011 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 2.2276 0.0273 0.0000 0.0000 0.2288 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0545 0.0000 0.0000 0.0000 0.0000 2.5382 - 10.45 51.08 2012 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 2.2459 0.0274 0.0000 0.0000 0.2382 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0548 0.0000 0.0000 0.0000 0.0000 2.5664 diff --git a/rLPJGUESS/inst/extdata/outputsForTests/standard/outDirectory/maet.out b/rLPJGUESS/inst/extdata/outputsForTests/standard/outDirectory/maet.out deleted file mode 100644 index 0c901fb..0000000 --- a/rLPJGUESS/inst/extdata/outputsForTests/standard/outDirectory/maet.out +++ /dev/null @@ -1,63 +0,0 @@ - Lon Lat Year Jan Feb Mar Apr May Jun Jul Aug Sep Oct Nov Dec - 10.45 51.08 1951 0.000 0.002 1.137 11.914 26.418 33.485 37.904 30.135 20.356 8.951 1.588 0.000 - 10.45 51.08 1952 0.000 0.000 0.383 15.520 29.480 36.097 40.622 31.659 12.406 6.129 0.665 0.000 - 10.45 51.08 1953 0.000 0.091 4.027 23.074 33.865 28.802 35.636 31.619 20.345 9.014 0.523 0.000 - 10.45 51.08 1954 0.000 0.000 1.053 8.889 31.827 35.179 25.262 27.463 17.574 8.679 1.986 0.000 - 10.45 51.08 1955 0.000 0.000 0.853 10.156 28.219 31.531 28.097 24.376 17.575 7.988 1.401 0.000 - 10.45 51.08 1956 0.004 0.000 0.509 6.806 31.078 25.284 30.960 25.948 18.309 7.764 0.917 0.000 - 10.45 51.08 1957 0.011 0.095 6.151 17.444 26.483 39.111 31.617 27.007 14.846 7.458 0.055 0.000 - 10.45 51.08 1958 0.000 0.355 0.819 7.335 27.275 30.087 35.299 31.660 20.042 8.373 1.011 0.000 - 10.45 51.08 1959 0.000 0.044 4.448 18.551 29.854 35.386 39.891 27.225 23.914 10.461 0.064 0.000 - 10.45 51.08 1960 0.000 0.012 1.447 9.963 25.424 37.565 32.448 25.975 15.634 6.726 1.649 0.000 - 10.45 51.08 1961 0.000 0.115 4.042 13.278 19.860 31.427 27.341 24.952 20.040 8.444 0.001 0.000 - 10.45 51.08 1962 0.001 0.016 0.246 7.603 19.631 32.537 27.176 27.060 17.729 7.767 1.167 0.000 - 10.45 51.08 1963 0.000 0.000 0.474 8.312 25.980 28.886 34.328 24.758 16.858 6.539 1.920 0.000 - 10.45 51.08 1964 0.000 0.001 0.050 7.753 29.178 38.625 35.465 26.158 18.036 5.951 0.281 0.003 - 10.45 51.08 1965 0.012 0.000 0.401 7.491 21.818 28.659 26.719 26.910 15.463 7.580 0.692 0.000 - 10.45 51.08 1966 0.003 0.970 2.447 11.568 29.240 31.744 25.268 24.776 15.074 7.838 0.191 0.000 - 10.45 51.08 1967 0.002 0.379 3.839 8.558 26.369 26.728 36.519 24.267 13.766 8.413 1.318 0.000 - 10.45 51.08 1968 0.000 0.011 1.709 12.944 21.834 29.464 31.045 23.414 13.386 6.315 0.909 0.000 - 10.45 51.08 1969 0.001 0.001 0.001 4.346 23.276 28.606 34.029 25.170 16.401 7.544 2.025 0.000 - 10.45 51.08 1970 0.000 0.001 0.162 3.665 19.105 33.415 29.559 22.363 17.203 5.199 1.675 0.063 - 10.45 51.08 1971 0.001 0.011 0.393 8.048 23.416 22.922 36.533 29.489 16.119 8.188 1.375 0.001 - 10.45 51.08 1972 0.001 0.002 1.910 8.943 20.262 28.336 26.424 21.730 12.731 6.220 1.424 0.001 - 10.45 51.08 1973 0.000 0.001 0.690 3.574 22.408 27.630 27.906 28.431 15.836 6.003 1.087 0.000 - 10.45 51.08 1974 0.011 0.216 3.661 13.452 19.349 23.480 23.475 22.853 15.518 3.462 0.002 0.004 - 10.45 51.08 1975 0.002 0.009 0.439 6.043 21.030 22.569 29.264 28.858 15.208 4.852 0.898 0.001 - 10.45 51.08 1976 0.002 0.004 0.260 7.536 23.105 29.309 32.267 24.566 11.524 6.048 1.189 0.001 - 10.45 51.08 1977 0.001 0.052 3.422 8.177 22.807 19.778 24.542 16.764 12.096 6.390 1.125 0.001 - 10.45 51.08 1978 0.001 0.026 1.819 8.372 18.055 23.702 24.190 20.727 10.891 6.224 0.673 0.002 - 10.45 51.08 1979 0.001 0.001 0.150 4.305 18.445 25.926 21.281 21.356 14.133 6.471 0.736 0.005 - 10.45 51.08 1980 0.002 0.025 0.351 4.245 18.582 24.024 19.832 23.809 13.965 5.891 0.110 0.011 - 10.45 51.08 1981 0.008 0.009 3.877 10.740 19.043 21.071 20.009 18.331 12.500 5.098 0.088 0.000 - 10.45 51.08 1982 0.001 0.004 0.272 6.073 18.076 23.513 24.878 22.140 15.725 5.098 1.927 0.001 - 10.45 51.08 1983 0.004 0.013 1.445 8.558 15.673 23.280 28.101 21.203 12.796 5.934 1.083 0.001 - 10.45 51.08 1984 0.002 0.003 0.087 4.061 12.176 19.172 20.401 18.902 9.594 5.429 1.187 0.002 - 10.45 51.08 1985 0.002 0.011 0.182 7.709 19.221 18.730 25.519 19.511 12.732 5.817 0.553 0.012 - 10.45 51.08 1986 0.006 0.001 0.376 3.278 19.417 22.144 23.211 20.047 10.578 6.470 1.699 0.004 - 10.45 51.08 1987 0.001 0.003 0.137 7.379 15.777 16.743 22.818 16.966 11.943 5.633 0.854 0.003 - 10.45 51.08 1988 0.006 0.009 0.261 6.347 21.773 19.391 23.998 22.410 11.707 5.422 0.853 0.004 - 10.45 51.08 1989 0.019 0.052 2.438 6.385 20.742 19.426 19.361 17.817 10.174 5.221 0.613 0.005 - 10.45 51.08 1990 0.007 0.576 4.560 7.377 19.407 14.825 18.881 17.541 6.735 4.188 0.022 0.002 - 10.45 51.08 1991 0.048 0.078 5.620 17.857 24.253 35.381 48.905 35.353 25.677 9.968 0.817 0.020 - 10.45 51.08 1992 0.033 0.196 2.726 12.657 37.066 31.612 37.093 32.182 18.060 4.698 0.408 0.028 - 10.45 51.08 1993 0.093 0.094 3.756 17.359 30.006 28.516 28.173 26.483 12.589 5.630 0.156 0.046 - 10.45 51.08 1994 0.047 0.098 3.675 11.153 23.987 28.510 34.254 24.468 13.690 5.500 1.396 0.072 - 10.45 51.08 1995 0.031 0.344 1.790 8.811 20.327 19.347 28.898 26.009 10.355 6.967 0.576 0.004 - 10.45 51.08 1996 0.006 0.030 0.186 6.741 13.687 22.712 20.627 18.605 7.991 4.816 1.112 0.010 - 10.45 51.08 1997 0.005 0.334 3.462 8.119 18.580 22.068 19.712 21.671 14.007 4.449 0.504 0.013 - 10.45 51.08 1998 0.042 0.809 3.236 10.571 21.287 21.742 18.910 19.936 9.363 3.235 0.037 0.020 - 10.45 51.08 1999 0.047 0.136 2.315 9.478 20.780 21.021 22.950 19.141 15.360 4.484 0.709 0.018 - 10.45 51.08 2000 0.018 0.278 2.566 11.218 23.025 23.011 15.760 21.301 10.631 5.594 0.696 0.032 - 10.45 51.08 2001 0.023 0.186 1.433 7.257 23.105 18.535 25.309 20.999 8.396 6.702 0.761 0.010 - 10.45 51.08 2002 0.085 0.941 4.206 9.951 17.842 22.282 19.614 18.702 11.889 3.412 0.064 0.011 - 10.45 51.08 2003 0.025 0.029 1.887 9.292 19.969 28.340 23.857 26.816 13.145 3.813 0.432 0.018 - 10.45 51.08 2004 0.016 0.250 3.743 12.872 17.368 21.420 22.223 22.767 14.355 6.546 0.056 0.013 - 10.45 51.08 2005 0.036 0.021 2.145 11.847 20.884 24.870 24.538 17.943 15.287 7.370 1.313 0.015 - 10.45 51.08 2006 0.008 0.037 0.651 8.715 22.106 26.062 32.182 15.797 17.430 6.579 1.371 0.047 - 10.45 51.08 2007 0.062 0.192 1.565 14.296 22.105 24.057 22.443 20.236 10.843 5.073 0.569 0.023 - 10.45 51.08 2008 0.112 0.847 3.343 8.473 22.630 24.743 23.888 19.672 10.555 5.267 0.400 0.017 - 10.45 51.08 2009 0.019 0.045 0.725 13.076 19.940 18.547 23.151 23.319 12.697 3.917 0.629 0.026 - 10.45 51.08 2010 0.006 0.076 2.403 12.847 13.842 26.081 27.394 16.205 10.826 5.565 0.792 0.004 - 10.45 51.08 2011 0.045 0.237 3.914 16.274 24.751 23.264 20.949 18.272 14.538 6.685 0.424 0.043 - 10.45 51.08 2012 0.042 0.098 4.615 9.961 23.993 19.790 22.790 23.680 13.802 6.174 0.621 0.032 diff --git a/rLPJGUESS/inst/extdata/outputsForTests/standard/outDirectory/mevap.out b/rLPJGUESS/inst/extdata/outputsForTests/standard/outDirectory/mevap.out deleted file mode 100644 index 3e2c55d..0000000 --- a/rLPJGUESS/inst/extdata/outputsForTests/standard/outDirectory/mevap.out +++ /dev/null @@ -1,63 +0,0 @@ - Lon Lat Year Jan Feb Mar Apr May Jun Jul Aug Sep Oct Nov Dec - 10.45 51.08 1951 6.115 12.717 22.276 20.863 10.803 53.192 27.963 35.118 16.027 5.980 7.026 6.217 - 10.45 51.08 1952 4.367 3.336 27.213 35.067 36.374 20.991 8.553 4.715 22.217 16.590 8.159 3.927 - 10.45 51.08 1953 0.147 5.288 23.457 12.331 12.216 27.068 33.660 17.613 5.621 4.090 4.959 3.119 - 10.45 51.08 1954 4.484 9.897 20.463 26.460 16.786 14.129 33.506 31.205 15.743 13.070 5.281 4.955 - 10.45 51.08 1955 0.729 6.046 10.398 30.845 17.291 19.883 34.542 38.666 17.067 7.539 5.542 5.564 - 10.45 51.08 1956 6.447 0.000 21.988 29.935 27.068 38.477 51.752 28.869 13.039 8.582 5.312 4.037 - 10.45 51.08 1957 6.870 12.349 21.111 17.016 17.312 26.037 32.552 27.546 13.431 15.288 9.260 4.890 - 10.45 51.08 1958 7.567 11.115 9.599 27.774 32.180 36.404 37.783 27.814 12.886 12.096 7.099 5.850 - 10.45 51.08 1959 7.744 9.701 15.118 18.287 18.316 26.624 4.870 20.760 6.321 1.317 7.993 4.751 - 10.45 51.08 1960 4.917 11.305 17.584 17.522 31.454 22.152 11.157 21.303 20.900 15.764 7.935 2.104 - 10.45 51.08 1961 1.411 15.335 16.417 30.646 39.640 46.782 10.835 16.154 9.029 2.453 3.174 4.421 - 10.45 51.08 1962 7.467 11.934 9.499 28.676 21.249 11.729 21.365 11.666 11.995 3.736 1.063 2.139 - 10.45 51.08 1963 0.000 0.000 20.030 29.508 19.449 25.360 31.778 36.957 13.450 10.724 6.611 4.566 - 10.45 51.08 1964 3.484 12.143 14.696 29.041 41.277 24.536 19.924 18.467 9.334 5.320 4.309 3.441 - 10.45 51.08 1965 6.145 0.000 14.409 25.260 30.334 39.962 23.558 23.471 14.635 5.511 1.833 5.503 - 10.45 51.08 1966 4.385 10.103 18.767 26.286 21.936 28.622 51.524 29.772 18.552 7.196 8.241 5.693 - 10.45 51.08 1967 6.576 11.291 21.900 21.779 19.986 43.214 27.350 20.959 23.713 12.603 5.016 4.187 - 10.45 51.08 1968 4.576 11.737 26.113 21.398 26.541 22.122 15.434 15.794 17.720 15.277 6.678 3.047 - 10.45 51.08 1969 5.193 3.095 0.000 33.946 44.165 48.633 18.795 10.935 26.786 6.908 4.021 1.455 - 10.45 51.08 1970 0.000 2.539 14.180 36.151 34.782 19.927 18.755 43.120 16.791 9.621 7.272 4.644 - 10.45 51.08 1971 3.237 8.781 13.971 19.385 21.935 26.189 12.147 5.361 6.229 7.791 4.876 5.559 - 10.45 51.08 1972 3.772 7.931 27.020 20.791 29.699 40.663 33.603 48.585 14.256 5.772 5.039 5.311 - 10.45 51.08 1973 5.325 9.810 22.954 20.111 24.664 16.066 15.430 14.663 16.429 14.517 8.328 5.475 - 10.45 51.08 1974 7.050 10.460 21.997 16.430 22.832 31.274 38.719 21.494 13.631 8.356 8.863 6.699 - 10.45 51.08 1975 8.034 11.132 21.734 32.459 31.426 26.741 27.405 11.168 13.306 6.465 4.220 3.006 - 10.45 51.08 1976 6.805 10.071 14.956 17.462 16.080 34.603 6.856 9.194 4.181 8.110 4.310 3.713 - 10.45 51.08 1977 4.477 10.295 22.915 23.024 19.262 30.294 40.022 40.248 22.686 11.771 10.000 5.704 - 10.45 51.08 1978 6.103 5.509 19.093 17.255 26.064 13.301 23.456 23.803 16.112 16.198 4.939 3.580 - 10.45 51.08 1979 0.000 0.000 17.978 33.332 30.556 23.103 31.549 17.762 11.750 6.654 6.765 6.292 - 10.45 51.08 1980 5.214 11.190 12.124 22.890 27.279 21.794 23.119 9.859 9.838 9.905 4.898 3.990 - 10.45 51.08 1981 2.658 8.648 26.446 21.045 44.787 37.201 14.920 34.138 13.963 18.903 9.554 1.936 - 10.45 51.08 1982 5.919 11.275 17.244 16.081 25.823 12.712 18.250 14.352 3.334 7.425 3.857 2.423 - 10.45 51.08 1983 4.102 6.019 15.172 43.459 35.976 29.042 14.381 26.178 15.176 6.583 2.029 1.912 - 10.45 51.08 1984 3.948 9.336 17.966 36.715 39.737 40.666 29.108 35.539 22.671 17.056 7.424 5.786 - 10.45 51.08 1985 2.449 10.207 15.297 22.882 15.320 24.289 24.490 20.737 12.921 3.334 0.934 3.887 - 10.45 51.08 1986 6.883 3.708 21.910 33.362 41.273 38.353 15.610 20.867 21.284 13.650 7.590 3.636 - 10.45 51.08 1987 1.788 4.295 7.376 28.743 28.057 54.948 33.472 37.722 23.737 14.550 5.226 5.413 - 10.45 51.08 1988 7.806 8.261 11.220 33.096 15.962 18.180 42.183 15.643 7.548 3.584 2.375 4.966 - 10.45 51.08 1989 8.139 9.348 24.817 17.899 26.657 28.068 16.680 15.339 10.564 10.384 10.731 6.394 - 10.45 51.08 1990 7.164 13.483 20.007 18.623 18.807 29.594 24.590 10.575 13.401 8.644 4.729 4.721 - 10.45 51.08 1991 6.156 7.783 15.643 9.382 9.186 8.488 5.239 23.998 2.389 1.302 1.350 2.089 - 10.45 51.08 1992 4.911 8.655 20.412 26.550 13.725 16.184 31.869 10.131 13.805 4.925 7.051 5.878 - 10.45 51.08 1993 7.034 3.596 20.188 17.022 17.700 42.053 37.088 21.338 13.646 9.016 5.567 5.689 - 10.45 51.08 1994 7.673 9.699 26.109 29.964 31.410 30.138 39.926 23.917 22.839 10.010 6.613 6.211 - 10.45 51.08 1995 7.329 14.148 17.888 23.655 29.162 41.625 43.861 25.606 22.735 15.698 4.539 2.806 - 10.45 51.08 1996 4.073 9.758 14.697 22.636 36.126 33.014 38.957 36.956 18.501 11.340 7.176 4.735 - 10.45 51.08 1997 5.902 14.682 25.769 27.378 24.254 12.870 39.074 26.480 13.490 9.045 5.589 4.219 - 10.45 51.08 1998 7.391 10.807 18.698 19.003 29.042 26.711 28.125 14.257 25.576 17.585 9.310 5.353 - 10.45 51.08 1999 6.897 9.806 20.316 24.130 23.196 39.476 47.670 20.612 12.326 4.880 6.286 5.809 - 10.45 51.08 2000 7.112 15.262 26.598 29.083 21.628 17.232 19.319 26.107 24.030 13.993 5.724 3.553 - 10.45 51.08 2001 4.018 8.760 17.342 32.137 33.150 28.917 49.939 9.885 12.314 11.739 7.127 5.124 - 10.45 51.08 2002 7.413 13.247 24.399 24.528 38.583 41.386 36.857 36.685 16.878 15.636 10.499 4.151 - 10.45 51.08 2003 7.268 10.861 23.944 17.544 21.628 50.140 14.451 5.763 14.094 9.329 6.413 5.885 - 10.45 51.08 2004 6.595 11.333 17.385 22.413 42.771 20.279 33.195 12.310 8.436 6.826 5.464 5.337 - 10.45 51.08 2005 7.462 9.932 19.180 26.408 25.674 13.355 25.592 33.093 24.524 14.909 5.714 4.008 - 10.45 51.08 2006 4.556 6.896 12.885 29.340 28.764 40.615 40.770 28.537 24.919 12.267 6.365 4.059 - 10.45 51.08 2007 6.554 11.040 23.248 23.368 26.062 51.519 44.960 47.688 17.952 15.061 6.475 5.113 - 10.45 51.08 2008 7.286 10.394 20.214 32.293 23.493 21.797 26.761 8.829 9.761 11.709 7.743 5.096 - 10.45 51.08 2009 5.507 8.974 20.465 29.461 40.705 26.197 32.991 15.922 15.588 11.577 10.430 5.340 - 10.45 51.08 2010 0.000 2.824 23.521 19.528 35.960 22.187 38.335 47.768 19.271 17.688 8.701 0.000 - 10.45 51.08 2011 4.718 10.561 21.454 18.503 8.457 14.222 37.377 24.958 21.469 10.233 4.573 3.494 - 10.45 51.08 2012 7.226 9.117 17.577 11.106 19.296 38.882 42.565 23.072 10.740 7.464 4.621 5.755 diff --git a/rLPJGUESS/inst/extdata/outputsForTests/standard/outDirectory/mgpp.out b/rLPJGUESS/inst/extdata/outputsForTests/standard/outDirectory/mgpp.out deleted file mode 100644 index ff5a987..0000000 --- a/rLPJGUESS/inst/extdata/outputsForTests/standard/outDirectory/mgpp.out +++ /dev/null @@ -1,63 +0,0 @@ - Lon Lat Year Jan Feb Mar Apr May Jun Jul Aug Sep Oct Nov Dec - 10.45 51.08 1951 0.000 0.000 0.002 0.034 0.151 0.188 0.189 0.156 0.115 0.055 0.014 0.000 - 10.45 51.08 1952 0.000 0.000 0.001 0.064 0.183 0.193 0.176 0.151 0.088 0.045 0.006 0.000 - 10.45 51.08 1953 0.000 0.000 0.011 0.114 0.170 0.162 0.173 0.167 0.121 0.063 0.004 0.000 - 10.45 51.08 1954 0.000 0.000 0.003 0.025 0.163 0.179 0.159 0.150 0.104 0.063 0.014 0.000 - 10.45 51.08 1955 0.000 0.000 0.002 0.028 0.161 0.182 0.155 0.137 0.110 0.056 0.010 0.000 - 10.45 51.08 1956 0.000 0.000 0.001 0.020 0.159 0.161 0.170 0.161 0.117 0.054 0.006 0.000 - 10.45 51.08 1957 0.000 0.001 0.022 0.084 0.157 0.186 0.149 0.156 0.099 0.055 0.001 0.000 - 10.45 51.08 1958 0.000 0.001 0.002 0.023 0.150 0.169 0.182 0.169 0.121 0.060 0.008 0.000 - 10.45 51.08 1959 0.000 0.000 0.014 0.088 0.183 0.182 0.174 0.147 0.151 0.073 0.001 0.000 - 10.45 51.08 1960 0.000 0.000 0.004 0.032 0.145 0.191 0.190 0.154 0.105 0.052 0.014 0.000 - 10.45 51.08 1961 0.000 0.001 0.013 0.083 0.142 0.184 0.162 0.155 0.119 0.065 0.000 0.000 - 10.45 51.08 1962 0.000 0.000 0.000 0.024 0.128 0.190 0.176 0.166 0.120 0.056 0.008 0.000 - 10.45 51.08 1963 0.000 0.000 0.001 0.032 0.154 0.179 0.188 0.154 0.116 0.049 0.018 0.000 - 10.45 51.08 1964 0.000 0.000 0.000 0.032 0.184 0.209 0.189 0.158 0.123 0.043 0.002 0.000 - 10.45 51.08 1965 0.000 0.000 0.001 0.023 0.133 0.183 0.170 0.178 0.116 0.055 0.006 0.000 - 10.45 51.08 1966 0.000 0.003 0.006 0.057 0.191 0.184 0.172 0.159 0.108 0.061 0.002 0.000 - 10.45 51.08 1967 0.000 0.001 0.010 0.029 0.155 0.174 0.200 0.154 0.102 0.068 0.010 0.000 - 10.45 51.08 1968 0.000 0.000 0.005 0.053 0.155 0.191 0.190 0.150 0.101 0.052 0.007 0.000 - 10.45 51.08 1969 0.000 0.000 0.000 0.015 0.147 0.181 0.186 0.157 0.118 0.063 0.018 0.000 - 10.45 51.08 1970 0.000 0.000 0.000 0.012 0.125 0.189 0.184 0.153 0.123 0.043 0.015 0.001 - 10.45 51.08 1971 0.000 0.000 0.001 0.028 0.140 0.168 0.208 0.173 0.122 0.064 0.012 0.000 - 10.45 51.08 1972 0.000 0.000 0.006 0.035 0.139 0.199 0.159 0.154 0.097 0.043 0.012 0.000 - 10.45 51.08 1973 0.000 0.000 0.002 0.010 0.137 0.182 0.172 0.176 0.112 0.047 0.008 0.000 - 10.45 51.08 1974 0.000 0.001 0.013 0.065 0.152 0.181 0.177 0.152 0.118 0.025 0.000 0.000 - 10.45 51.08 1975 0.000 0.000 0.001 0.021 0.146 0.167 0.181 0.167 0.112 0.038 0.007 0.000 - 10.45 51.08 1976 0.000 0.000 0.001 0.027 0.155 0.182 0.172 0.176 0.095 0.052 0.009 0.000 - 10.45 51.08 1977 0.000 0.001 0.014 0.036 0.176 0.149 0.171 0.131 0.094 0.057 0.013 0.000 - 10.45 51.08 1978 0.000 0.000 0.005 0.032 0.127 0.172 0.178 0.152 0.095 0.054 0.004 0.000 - 10.45 51.08 1979 0.000 0.000 0.001 0.016 0.107 0.178 0.165 0.157 0.110 0.052 0.006 0.000 - 10.45 51.08 1980 0.000 0.000 0.001 0.014 0.106 0.181 0.152 0.162 0.113 0.050 0.000 0.000 - 10.45 51.08 1981 0.000 0.000 0.017 0.066 0.150 0.166 0.154 0.144 0.110 0.046 0.002 0.000 - 10.45 51.08 1982 0.000 0.000 0.002 0.024 0.120 0.171 0.167 0.157 0.121 0.053 0.020 0.000 - 10.45 51.08 1983 0.000 0.000 0.005 0.049 0.142 0.178 0.179 0.154 0.115 0.053 0.010 0.000 - 10.45 51.08 1984 0.000 0.000 0.001 0.015 0.095 0.167 0.161 0.148 0.088 0.058 0.009 0.000 - 10.45 51.08 1985 0.000 0.000 0.001 0.035 0.145 0.161 0.192 0.159 0.111 0.050 0.005 0.001 - 10.45 51.08 1986 0.000 0.000 0.002 0.014 0.150 0.164 0.173 0.151 0.100 0.064 0.017 0.000 - 10.45 51.08 1987 0.000 0.000 0.001 0.035 0.132 0.155 0.175 0.145 0.104 0.052 0.009 0.000 - 10.45 51.08 1988 0.001 0.001 0.001 0.026 0.173 0.162 0.185 0.168 0.106 0.055 0.007 0.000 - 10.45 51.08 1989 0.001 0.001 0.009 0.037 0.171 0.164 0.151 0.138 0.092 0.055 0.008 0.000 - 10.45 51.08 1990 0.001 0.004 0.028 0.057 0.196 0.149 0.176 0.141 0.083 0.052 0.001 0.000 - 10.45 51.08 1991 0.001 0.001 0.018 0.074 0.120 0.183 0.178 0.147 0.120 0.053 0.005 0.000 - 10.45 51.08 1992 0.000 0.001 0.008 0.044 0.185 0.156 0.170 0.145 0.107 0.027 0.002 0.000 - 10.45 51.08 1993 0.001 0.000 0.012 0.081 0.181 0.167 0.155 0.155 0.089 0.039 0.001 0.001 - 10.45 51.08 1994 0.001 0.001 0.014 0.054 0.172 0.175 0.155 0.145 0.104 0.039 0.012 0.001 - 10.45 51.08 1995 0.001 0.003 0.006 0.041 0.148 0.143 0.157 0.159 0.088 0.061 0.005 0.000 - 10.45 51.08 1996 0.000 0.001 0.002 0.035 0.113 0.163 0.166 0.143 0.074 0.047 0.012 0.000 - 10.45 51.08 1997 0.000 0.003 0.015 0.037 0.149 0.168 0.159 0.150 0.123 0.041 0.005 0.001 - 10.45 51.08 1998 0.002 0.005 0.015 0.078 0.178 0.170 0.154 0.145 0.090 0.035 0.001 0.001 - 10.45 51.08 1999 0.002 0.001 0.010 0.060 0.178 0.183 0.162 0.148 0.123 0.044 0.009 0.001 - 10.45 51.08 2000 0.001 0.003 0.011 0.064 0.187 0.160 0.143 0.161 0.099 0.060 0.010 0.002 - 10.45 51.08 2001 0.001 0.002 0.006 0.040 0.186 0.162 0.181 0.149 0.086 0.069 0.008 0.001 - 10.45 51.08 2002 0.002 0.005 0.023 0.067 0.157 0.172 0.147 0.144 0.106 0.037 0.003 0.001 - 10.45 51.08 2003 0.001 0.001 0.012 0.049 0.170 0.194 0.166 0.161 0.119 0.032 0.007 0.001 - 10.45 51.08 2004 0.001 0.002 0.017 0.091 0.160 0.183 0.185 0.157 0.126 0.064 0.002 0.001 - 10.45 51.08 2005 0.002 0.001 0.012 0.076 0.156 0.178 0.180 0.154 0.129 0.076 0.017 0.001 - 10.45 51.08 2006 0.000 0.001 0.005 0.049 0.186 0.184 0.169 0.142 0.141 0.070 0.017 0.002 - 10.45 51.08 2007 0.003 0.004 0.013 0.084 0.194 0.190 0.176 0.169 0.110 0.051 0.007 0.001 - 10.45 51.08 2008 0.003 0.005 0.016 0.054 0.200 0.196 0.177 0.158 0.099 0.056 0.006 0.001 - 10.45 51.08 2009 0.001 0.001 0.008 0.098 0.185 0.171 0.175 0.176 0.118 0.039 0.009 0.001 - 10.45 51.08 2010 0.000 0.002 0.015 0.080 0.131 0.195 0.166 0.143 0.107 0.052 0.010 0.000 - 10.45 51.08 2011 0.002 0.003 0.020 0.131 0.207 0.188 0.180 0.150 0.131 0.062 0.008 0.002 - 10.45 51.08 2012 0.002 0.002 0.027 0.062 0.193 0.177 0.179 0.178 0.125 0.061 0.008 0.001 diff --git a/rLPJGUESS/inst/extdata/outputsForTests/standard/outDirectory/mintercep.out b/rLPJGUESS/inst/extdata/outputsForTests/standard/outDirectory/mintercep.out deleted file mode 100644 index aeb623f..0000000 --- a/rLPJGUESS/inst/extdata/outputsForTests/standard/outDirectory/mintercep.out +++ /dev/null @@ -1,63 +0,0 @@ - Lon Lat Year Jan Feb Mar Apr May Jun Jul Aug Sep Oct Nov Dec - 10.45 51.08 1951 0.007 0.009 0.091 0.337 1.556 5.819 1.940 3.079 1.618 0.391 0.712 0.005 - 10.45 51.08 1952 0.012 0.008 0.157 0.952 2.976 1.800 0.884 1.548 3.676 2.243 1.032 0.008 - 10.45 51.08 1953 0.010 0.010 0.028 0.577 1.957 4.289 2.454 1.757 0.877 0.853 0.002 0.007 - 10.45 51.08 1954 0.011 0.010 0.030 0.595 1.073 1.885 4.698 2.928 1.902 1.370 0.432 0.011 - 10.45 51.08 1955 0.009 0.016 0.029 0.457 1.669 2.457 3.758 2.216 1.860 0.835 0.120 0.012 - 10.45 51.08 1956 0.010 0.010 0.015 0.820 1.465 4.839 5.554 3.505 1.010 1.752 0.573 0.008 - 10.45 51.08 1957 0.013 0.035 0.458 0.637 1.939 2.729 3.736 1.966 2.445 0.608 0.009 0.008 - 10.45 51.08 1958 0.012 0.234 0.522 0.491 2.996 2.274 2.752 3.174 1.984 1.237 0.590 0.011 - 10.45 51.08 1959 0.012 0.004 0.221 1.280 2.092 1.959 0.684 1.999 0.024 0.764 0.022 0.007 - 10.45 51.08 1960 0.017 0.009 0.066 0.720 2.350 1.318 2.159 3.024 1.587 2.070 0.683 0.011 - 10.45 51.08 1961 0.011 0.019 0.323 2.732 4.138 3.143 2.070 1.791 1.025 0.627 0.010 0.013 - 10.45 51.08 1962 0.014 0.017 0.034 0.378 2.057 0.691 2.856 1.405 1.050 0.337 0.130 0.010 - 10.45 51.08 1963 0.012 0.009 0.068 0.482 1.246 3.721 1.528 4.320 1.590 0.999 0.952 0.004 - 10.45 51.08 1964 0.006 0.017 0.023 0.924 2.483 1.831 1.608 1.719 1.067 0.906 0.088 0.007 - 10.45 51.08 1965 0.018 0.017 0.025 0.807 1.123 3.356 2.609 1.701 1.654 0.381 0.453 0.017 - 10.45 51.08 1966 0.013 0.036 0.295 1.344 2.172 3.790 3.213 2.434 0.874 1.384 0.178 0.019 - 10.45 51.08 1967 0.013 0.029 0.372 0.415 1.759 3.695 2.039 2.558 2.316 1.068 0.244 0.014 - 10.45 51.08 1968 0.014 0.027 0.040 1.430 1.651 2.753 1.757 2.269 1.996 1.204 0.241 0.010 - 10.45 51.08 1969 0.012 0.026 0.028 0.641 3.071 3.367 0.459 3.201 1.001 0.413 0.657 0.008 - 10.45 51.08 1970 0.009 0.030 0.024 0.319 2.777 1.892 1.882 3.838 0.823 1.587 0.859 0.086 - 10.45 51.08 1971 0.007 0.019 0.037 0.800 1.467 2.950 0.568 1.691 1.048 0.851 0.373 0.011 - 10.45 51.08 1972 0.006 0.002 0.095 0.573 2.482 3.014 2.797 3.266 1.045 0.647 0.460 0.002 - 10.45 51.08 1973 0.012 0.026 0.012 0.222 1.476 1.779 2.593 0.919 1.638 1.149 0.287 0.012 - 10.45 51.08 1974 0.012 0.095 0.232 0.479 2.347 3.672 2.979 1.981 1.179 1.690 0.011 0.026 - 10.45 51.08 1975 0.009 0.015 0.057 0.311 1.893 2.920 1.307 1.540 1.106 1.014 0.149 0.007 - 10.45 51.08 1976 0.033 0.009 0.023 0.329 1.585 1.548 1.027 1.392 1.210 0.817 0.418 0.011 - 10.45 51.08 1977 0.017 0.028 0.465 0.481 1.125 2.856 2.201 4.196 1.233 0.867 0.627 0.019 - 10.45 51.08 1978 0.012 0.020 0.093 0.248 2.051 1.016 2.074 2.319 2.241 0.678 0.003 0.021 - 10.45 51.08 1979 0.019 0.026 0.108 0.374 1.326 2.622 2.297 0.993 1.583 0.320 0.699 0.022 - 10.45 51.08 1980 0.025 0.027 0.036 0.571 0.964 2.457 2.195 0.763 1.936 0.697 0.117 0.022 - 10.45 51.08 1981 0.039 0.026 0.370 0.601 2.376 2.127 1.291 2.736 1.071 0.979 0.036 0.027 - 10.45 51.08 1982 0.021 0.006 0.032 0.285 0.949 1.681 1.736 0.664 0.420 1.158 0.389 0.018 - 10.45 51.08 1983 0.036 0.025 0.189 1.246 3.371 1.034 1.169 1.490 1.810 0.175 0.098 0.016 - 10.45 51.08 1984 0.038 0.045 0.005 0.168 3.764 1.770 1.923 1.953 1.604 1.623 0.064 0.015 - 10.45 51.08 1985 0.021 0.017 0.042 0.332 1.161 2.368 1.966 2.008 0.665 0.144 0.381 0.027 - 10.45 51.08 1986 0.032 0.025 0.076 0.432 2.592 2.002 1.834 2.043 1.214 0.661 0.250 0.030 - 10.45 51.08 1987 0.040 0.046 0.061 0.150 1.968 4.084 2.572 2.437 1.876 0.613 0.720 0.019 - 10.45 51.08 1988 0.032 0.056 0.134 0.274 0.897 1.537 2.774 0.810 0.787 0.487 0.450 0.044 - 10.45 51.08 1989 0.024 0.036 0.180 0.930 1.003 1.730 1.371 0.751 1.095 0.642 0.411 0.033 - 10.45 51.08 1990 0.026 0.139 0.340 1.293 0.456 2.216 0.755 1.327 1.419 0.335 0.080 0.039 - 10.45 51.08 1991 0.037 0.043 0.235 0.376 0.989 2.102 0.758 1.583 0.672 0.560 0.240 0.033 - 10.45 51.08 1992 0.019 0.047 0.514 0.267 0.832 2.233 1.972 1.229 0.742 1.137 0.197 0.036 - 10.45 51.08 1993 0.063 0.040 0.112 0.335 1.978 2.141 2.469 1.403 1.562 0.825 0.146 0.069 - 10.45 51.08 1994 0.074 0.082 0.421 0.762 2.488 1.783 2.413 2.671 1.514 0.635 0.232 0.059 - 10.45 51.08 1995 0.099 0.121 0.151 0.920 1.858 2.487 2.564 1.433 1.748 0.348 0.335 0.043 - 10.45 51.08 1996 0.006 0.085 0.099 0.540 2.803 2.222 2.289 2.127 1.111 1.083 0.591 0.036 - 10.45 51.08 1997 0.032 0.188 0.698 0.719 1.719 1.209 3.299 1.677 0.495 1.103 0.137 0.077 - 10.45 51.08 1998 0.075 0.079 0.506 1.501 1.281 2.435 2.661 0.966 1.947 1.845 0.135 0.035 - 10.45 51.08 1999 0.060 0.106 0.333 0.720 2.452 2.931 2.563 1.725 0.921 0.619 0.308 0.080 - 10.45 51.08 2000 0.083 0.195 0.736 0.796 1.107 1.774 2.392 1.901 2.203 0.964 0.197 0.047 - 10.45 51.08 2001 0.064 0.097 0.861 0.970 0.984 3.292 2.655 0.853 2.022 0.908 0.577 0.084 - 10.45 51.08 2002 0.058 0.506 0.905 1.205 2.705 2.060 1.879 2.982 1.024 1.349 0.157 0.097 - 10.45 51.08 2003 0.086 0.064 0.129 0.336 2.651 2.710 1.888 0.876 1.548 0.880 0.131 0.060 - 10.45 51.08 2004 0.076 0.073 0.281 1.068 2.785 2.115 2.760 1.462 1.163 0.356 0.110 0.036 - 10.45 51.08 2005 0.079 0.147 0.244 1.146 1.804 1.753 3.213 2.341 2.322 0.574 0.362 0.087 - 10.45 51.08 2006 0.064 0.136 0.293 1.287 2.160 2.688 1.446 3.944 0.388 1.537 0.660 0.051 - 10.45 51.08 2007 0.170 0.165 0.328 0.220 3.530 2.958 3.624 2.321 2.076 0.355 0.784 0.082 - 10.45 51.08 2008 0.133 0.141 0.947 1.716 0.840 2.602 2.346 1.541 1.392 1.608 0.106 0.087 - 10.45 51.08 2009 0.036 0.220 0.348 1.409 3.076 2.399 2.884 0.750 1.767 1.495 0.600 0.145 - 10.45 51.08 2010 0.092 0.097 0.360 0.469 3.376 0.660 3.649 4.931 1.415 0.396 0.318 0.114 - 10.45 51.08 2011 0.103 0.074 0.174 1.146 0.358 3.663 3.079 3.871 1.186 1.186 0.004 0.132 - 10.45 51.08 2012 0.178 0.079 0.091 0.519 1.318 4.421 4.680 2.309 1.044 0.662 0.363 0.151 diff --git a/rLPJGUESS/inst/extdata/outputsForTests/standard/outDirectory/miso.out b/rLPJGUESS/inst/extdata/outputsForTests/standard/outDirectory/miso.out deleted file mode 100644 index 8edc368..0000000 --- a/rLPJGUESS/inst/extdata/outputsForTests/standard/outDirectory/miso.out +++ /dev/null @@ -1,63 +0,0 @@ - Lon Lat Year Jan Feb Mar Apr May Jun Jul Aug Sep Oct Nov Dec - 10.45 51.08 1951 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1952 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1953 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1954 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1955 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1956 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1957 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1958 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1959 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1960 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1961 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1962 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1963 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1964 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1965 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1966 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1967 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1968 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1969 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1970 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1971 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1972 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1973 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1974 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1975 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1976 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1977 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1978 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1979 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1980 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1981 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1982 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1983 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1984 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1985 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1986 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1987 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1988 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1989 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1990 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1991 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1992 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1993 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 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/dev/null @@ -1,63 +0,0 @@ - Lon Lat Year Jan Feb Mar Apr May Jun Jul Aug Sep Oct Nov Dec - 10.45 51.08 1951 0.013 0.013 0.129 0.747 2.280 2.550 2.550 2.550 2.550 2.550 1.686 0.013 - 10.45 51.08 1952 0.014 0.014 0.063 1.253 2.573 2.573 2.573 2.573 2.573 2.573 1.008 0.014 - 10.45 51.08 1953 0.014 0.020 0.240 1.721 2.591 2.591 2.591 2.591 2.591 2.591 0.346 0.014 - 10.45 51.08 1954 0.015 0.015 0.078 0.654 2.145 2.632 2.632 2.632 2.632 2.632 2.097 0.015 - 10.45 51.08 1955 0.016 0.016 0.081 0.703 2.420 2.614 2.614 2.614 2.614 2.614 1.661 0.016 - 10.45 51.08 1956 0.017 0.016 0.044 0.549 2.115 2.599 2.599 2.599 2.599 2.599 1.652 0.016 - 10.45 51.08 1957 0.027 0.040 0.537 1.693 2.582 2.595 2.595 2.595 2.595 2.563 0.086 0.016 - 10.45 51.08 1958 0.017 0.148 0.417 0.682 2.245 2.600 2.600 2.600 2.600 2.600 1.454 0.017 - 10.45 51.08 1959 0.017 0.021 0.442 1.720 2.588 2.588 2.588 2.588 2.588 2.578 0.162 0.017 - 10.45 51.08 1960 0.017 0.018 0.192 0.874 2.221 2.627 2.627 2.627 2.627 2.627 1.731 0.017 - 10.45 51.08 1961 0.018 0.023 0.489 1.784 2.579 2.579 2.579 2.579 2.579 2.557 0.018 0.018 - 10.45 51.08 1962 0.018 0.022 0.047 0.550 2.188 2.586 2.586 2.586 2.586 2.586 1.302 0.018 - 10.45 51.08 1963 0.019 0.019 0.060 0.667 2.262 2.593 2.593 2.593 2.593 2.593 1.907 0.019 - 10.45 51.08 1964 0.019 0.019 0.022 0.569 2.355 2.595 2.595 2.595 2.595 2.595 0.620 0.027 - 10.45 51.08 1965 0.034 0.019 0.041 0.621 1.918 2.605 2.605 2.605 2.605 2.605 1.226 0.019 - 10.45 51.08 1966 0.023 0.131 0.509 1.184 2.556 2.603 2.603 2.603 2.603 2.603 0.595 0.020 - 10.45 51.08 1967 0.021 0.079 0.394 0.814 2.166 2.618 2.618 2.618 2.618 2.618 1.559 0.020 - 10.45 51.08 1968 0.022 0.023 0.117 1.266 2.586 2.600 2.600 2.600 2.600 2.600 0.959 0.022 - 10.45 51.08 1969 0.022 0.022 0.022 0.420 2.116 2.597 2.597 2.597 2.597 2.597 2.426 0.022 - 10.45 51.08 1970 0.022 0.022 0.034 0.304 1.869 2.584 2.584 2.584 2.584 2.584 2.584 0.180 - 10.45 51.08 1971 0.022 0.022 0.066 0.673 2.138 2.555 2.555 2.555 2.555 2.555 1.795 0.022 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- 10.45 51.08 1983 0.042 0.046 0.206 0.827 2.174 2.278 2.278 2.278 2.278 2.278 1.149 0.042 - 10.45 51.08 1984 0.044 0.044 0.049 0.332 1.641 2.294 2.294 2.294 2.294 2.294 1.544 0.044 - 10.45 51.08 1985 0.047 0.046 0.055 0.827 1.898 2.265 2.265 2.265 2.265 2.265 0.860 0.048 - 10.45 51.08 1986 0.053 0.049 0.068 0.318 1.987 2.290 2.290 2.290 2.290 2.290 2.062 0.049 - 10.45 51.08 1987 0.050 0.050 0.057 0.590 2.068 2.292 2.292 2.292 2.292 2.292 1.694 0.050 - 10.45 51.08 1988 0.053 0.053 0.066 0.546 2.044 2.295 2.295 2.295 2.295 2.295 1.623 0.053 - 10.45 51.08 1989 0.057 0.058 0.226 0.907 1.682 1.774 1.774 1.774 1.774 1.774 0.622 0.057 - 10.45 51.08 1990 0.179 0.272 1.157 1.930 2.424 2.429 2.429 2.429 2.429 2.058 0.620 0.066 - 10.45 51.08 1991 0.097 0.080 0.596 1.686 2.314 2.478 2.478 2.478 2.478 2.478 0.772 0.087 - 10.45 51.08 1992 0.101 0.099 0.323 0.801 2.122 2.356 2.356 2.356 2.356 2.356 0.362 0.108 - 10.45 51.08 1993 0.118 0.159 0.457 1.265 2.254 2.254 2.254 2.254 2.254 2.254 0.593 0.112 - 10.45 51.08 1994 0.114 0.108 0.411 1.068 2.201 2.234 2.234 2.234 2.234 2.234 0.913 0.185 - 10.45 51.08 1995 0.116 0.132 0.269 0.893 2.084 2.186 2.186 2.186 2.186 2.186 1.207 0.111 - 10.45 51.08 1996 0.116 0.115 0.123 0.546 1.945 2.150 2.150 2.150 2.150 2.150 1.681 0.116 - 10.45 51.08 1997 0.120 0.141 0.527 0.922 1.934 2.138 2.138 2.138 2.138 2.138 0.726 0.122 - 10.45 51.08 1998 0.132 0.223 0.693 1.561 2.169 2.169 2.169 2.169 2.169 1.896 0.138 0.131 - 10.45 51.08 1999 0.138 0.145 0.349 1.142 2.144 2.200 2.200 2.200 2.200 2.200 0.814 0.137 - 10.45 51.08 2000 0.144 0.157 0.425 1.104 2.241 2.241 2.241 2.241 2.241 2.241 0.763 0.147 - 10.45 51.08 2001 0.153 0.161 0.361 0.994 2.126 2.262 2.262 2.262 2.262 2.262 1.113 0.154 - 10.45 51.08 2002 0.157 0.421 0.953 1.546 2.266 2.284 2.284 2.284 2.284 1.771 0.157 0.156 - 10.45 51.08 2003 0.160 0.160 0.259 0.914 2.246 2.286 2.286 2.286 2.286 2.286 0.444 0.160 - 10.45 51.08 2004 0.165 0.251 0.655 1.453 2.296 2.296 2.296 2.296 2.296 2.281 0.165 0.165 - 10.45 51.08 2005 0.174 0.174 0.320 1.278 2.352 2.369 2.369 2.369 2.369 2.369 0.902 0.174 - 10.45 51.08 2006 0.182 0.182 0.214 0.916 2.277 2.414 2.414 2.414 2.414 2.414 1.521 0.182 - 10.45 51.08 2007 0.185 0.186 0.215 1.136 2.390 2.396 2.396 2.396 2.396 2.396 1.182 0.185 - 10.45 51.08 2008 0.205 0.286 0.687 1.157 2.309 2.427 2.427 2.427 2.427 2.427 0.783 0.203 - 10.45 51.08 2009 0.210 0.210 0.236 1.384 2.452 2.452 2.452 2.452 2.452 2.452 0.957 0.210 - 10.45 51.08 2010 0.217 0.217 0.375 1.330 2.436 2.478 2.478 2.478 2.478 2.478 0.965 0.217 - 10.45 51.08 2011 0.215 0.226 0.484 1.776 2.467 2.467 2.467 2.467 2.467 2.464 0.360 0.215 - 10.45 51.08 2012 0.229 0.229 0.517 1.368 2.530 2.539 2.539 2.539 2.539 2.539 0.843 0.229 diff --git a/rLPJGUESS/inst/extdata/outputsForTests/standard/outDirectory/mmon.out b/rLPJGUESS/inst/extdata/outputsForTests/standard/outDirectory/mmon.out deleted file mode 100644 index 8edc368..0000000 --- a/rLPJGUESS/inst/extdata/outputsForTests/standard/outDirectory/mmon.out +++ /dev/null @@ -1,63 +0,0 @@ - Lon Lat Year Jan Feb Mar Apr May Jun Jul Aug Sep Oct Nov Dec - 10.45 51.08 1951 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1952 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1953 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1954 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1955 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1956 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1957 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1958 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1959 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1960 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1961 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1962 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1963 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1964 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1965 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1966 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1967 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1968 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1969 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1970 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1971 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1972 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1973 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1974 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1975 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1976 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1977 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1978 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1979 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1980 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1981 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1982 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1983 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1984 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1985 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1986 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1987 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1988 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1989 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1990 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1991 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1992 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 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2004 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 2005 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 2006 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 2007 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 2008 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 2009 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 2010 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 2011 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 2012 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 diff --git a/rLPJGUESS/inst/extdata/outputsForTests/standard/outDirectory/mnee.out b/rLPJGUESS/inst/extdata/outputsForTests/standard/outDirectory/mnee.out deleted file mode 100644 index 8c3c798..0000000 --- a/rLPJGUESS/inst/extdata/outputsForTests/standard/outDirectory/mnee.out +++ /dev/null @@ -1,63 +0,0 @@ - Lon Lat Year Jan Feb Mar Apr May Jun Jul Aug Sep Oct Nov Dec - 10.45 51.08 1951 -0.021 -0.017 -0.017 -0.015 0.039 0.058 0.031 0.015 -0.004 -0.001 -0.020 -0.019 - 10.45 51.08 1952 -0.016 -0.008 -0.020 -0.009 0.065 0.049 -0.013 -0.018 0.012 0.000 -0.014 -0.009 - 10.45 51.08 1953 -0.009 -0.011 -0.023 0.025 0.033 0.025 0.018 0.016 0.003 -0.014 -0.026 -0.023 - 10.45 51.08 1954 -0.008 -0.004 -0.024 -0.014 0.044 0.021 0.035 0.020 -0.003 -0.002 -0.019 -0.021 - 10.45 51.08 1955 -0.008 -0.009 -0.011 -0.014 0.048 0.048 0.013 0.014 0.004 -0.005 -0.015 -0.017 - 10.45 51.08 1956 -0.017 -0.001 -0.016 -0.016 0.044 0.041 0.036 0.037 0.014 -0.010 -0.015 -0.020 - 10.45 51.08 1957 -0.012 -0.024 -0.020 0.020 0.056 0.032 -0.008 0.030 0.011 0.000 -0.026 -0.012 - 10.45 51.08 1958 -0.015 -0.020 -0.009 -0.008 0.035 0.042 0.031 0.021 0.002 -0.007 -0.018 -0.018 - 10.45 51.08 1959 -0.016 -0.009 -0.024 0.013 0.061 0.044 -0.011 0.004 0.032 0.006 -0.019 -0.014 - 10.45 51.08 1960 -0.015 -0.010 -0.021 -0.015 0.044 0.042 0.044 0.025 0.013 -0.002 -0.019 -0.014 - 10.45 51.08 1961 -0.009 -0.021 -0.028 0.013 0.053 0.056 0.014 0.026 -0.012 -0.022 -0.024 -0.014 - 10.45 51.08 1962 -0.018 -0.012 -0.008 -0.023 0.040 0.049 0.045 0.022 0.022 -0.010 -0.013 -0.007 - 10.45 51.08 1963 -0.002 -0.003 -0.016 -0.015 0.045 0.041 0.030 0.026 0.014 -0.003 -0.017 -0.007 - 10.45 51.08 1964 -0.005 -0.010 -0.011 -0.017 0.062 0.037 0.024 0.019 0.011 -0.007 -0.023 -0.015 - 10.45 51.08 1965 -0.015 -0.006 -0.014 -0.020 0.040 0.055 0.033 0.046 0.023 -0.006 -0.013 -0.016 - 10.45 51.08 1966 -0.009 -0.017 -0.019 0.003 0.062 0.038 0.051 0.033 0.016 -0.015 -0.015 -0.015 - 10.45 51.08 1967 -0.015 -0.019 -0.022 -0.010 0.041 0.057 0.032 0.014 0.011 -0.010 -0.017 -0.012 - 10.45 51.08 1968 -0.009 -0.014 -0.018 -0.009 0.055 0.054 0.034 0.017 0.008 -0.007 -0.018 -0.007 - 10.45 51.08 1969 -0.012 -0.008 -0.008 -0.020 0.042 0.058 0.020 0.001 0.026 -0.002 -0.018 -0.005 - 10.45 51.08 1970 -0.006 -0.007 -0.012 -0.019 0.035 0.039 0.035 0.029 0.020 -0.011 -0.017 -0.015 - 10.45 51.08 1971 -0.009 -0.017 -0.014 -0.020 0.027 0.049 0.044 0.003 0.025 0.001 -0.013 -0.019 - 10.45 51.08 1972 -0.008 -0.013 -0.023 -0.010 0.047 0.074 0.019 0.037 0.019 -0.001 -0.015 -0.014 - 10.45 51.08 1973 -0.010 -0.014 -0.020 -0.020 0.037 0.042 0.016 0.026 0.006 -0.000 -0.015 -0.010 - 10.45 51.08 1974 -0.022 -0.020 -0.015 0.005 0.060 0.066 0.054 0.017 0.013 -0.011 -0.023 -0.023 - 10.45 51.08 1975 -0.028 -0.015 -0.022 -0.013 0.046 0.051 0.027 0.002 0.003 -0.015 -0.014 -0.014 - 10.45 51.08 1976 -0.018 -0.008 -0.014 -0.017 0.045 0.048 -0.011 0.040 0.001 -0.010 -0.016 -0.012 - 10.45 51.08 1977 -0.011 -0.019 -0.022 0.001 0.072 0.035 0.043 0.025 0.012 -0.002 -0.018 -0.014 - 10.45 51.08 1978 -0.015 -0.008 -0.024 -0.009 0.040 0.038 0.054 0.027 0.015 0.000 -0.020 -0.013 - 10.45 51.08 1979 -0.004 -0.005 -0.018 -0.018 0.020 0.028 0.046 0.031 0.013 -0.005 -0.013 -0.021 - 10.45 51.08 1980 -0.007 -0.017 -0.019 -0.019 0.029 0.053 0.040 0.016 0.013 -0.001 -0.019 -0.013 - 10.45 51.08 1981 -0.009 -0.009 -0.015 0.007 0.051 0.037 0.017 0.022 0.012 -0.006 -0.023 -0.008 - 10.45 51.08 1982 -0.008 -0.010 -0.021 -0.019 0.022 0.012 0.003 -0.004 -0.015 -0.015 -0.018 -0.017 - 10.45 51.08 1983 -0.025 -0.009 -0.022 0.002 0.047 0.045 0.001 0.008 0.009 -0.012 -0.016 -0.012 - 10.45 51.08 1984 -0.020 -0.010 -0.014 -0.020 0.022 0.055 0.037 0.018 0.004 -0.004 -0.018 -0.014 - 10.45 51.08 1985 -0.004 -0.007 -0.016 -0.017 0.033 0.043 0.043 0.025 0.011 -0.022 -0.012 -0.021 - 10.45 51.08 1986 -0.011 -0.003 -0.015 -0.016 0.031 0.042 0.018 0.010 0.026 0.000 -0.014 -0.017 - 10.45 51.08 1987 -0.006 -0.007 -0.008 -0.014 0.046 0.055 0.030 0.031 0.001 -0.004 -0.018 -0.014 - 10.45 51.08 1988 -0.024 -0.016 -0.016 -0.017 0.047 0.033 0.042 0.015 0.004 -0.013 -0.017 -0.017 - 10.45 51.08 1989 -0.019 -0.015 -0.024 -0.011 0.055 0.039 0.001 -0.008 -0.014 -0.011 -0.018 -0.015 - 10.45 51.08 1990 -0.015 -0.025 -0.013 0.010 0.068 0.039 0.037 -0.021 0.000 -0.014 -0.026 -0.012 - 10.45 51.08 1991 -0.019 -0.005 -0.023 0.014 0.038 0.052 -0.010 -0.005 -0.014 -0.026 -0.021 -0.011 - 10.45 51.08 1992 -0.017 -0.015 -0.022 -0.004 0.047 0.004 0.012 -0.032 0.007 -0.021 -0.022 -0.015 - 10.45 51.08 1993 -0.018 -0.006 -0.012 0.009 0.028 0.036 0.027 0.014 0.004 -0.015 -0.012 -0.014 - 10.45 51.08 1994 -0.020 -0.010 -0.019 0.004 0.050 0.042 -0.023 -0.017 0.013 -0.008 -0.023 -0.020 - 10.45 51.08 1995 -0.011 -0.021 -0.018 -0.007 0.046 0.037 -0.002 -0.005 0.005 -0.009 -0.018 -0.006 - 10.45 51.08 1996 -0.004 -0.004 -0.011 -0.015 0.030 0.029 0.045 0.013 0.006 -0.007 -0.017 -0.008 - 10.45 51.08 1997 -0.005 -0.017 -0.019 -0.001 0.039 0.030 0.025 -0.005 0.012 -0.015 -0.015 -0.014 - 10.45 51.08 1998 -0.022 -0.017 -0.017 0.015 0.056 0.034 0.025 -0.003 0.010 -0.010 -0.015 -0.011 - 10.45 51.08 1999 -0.021 -0.009 -0.018 0.003 0.059 0.056 0.018 0.009 -0.005 -0.016 -0.015 -0.016 - 10.45 51.08 2000 -0.013 -0.017 -0.018 0.002 0.043 0.018 0.028 0.017 0.007 -0.004 -0.024 -0.022 - 10.45 51.08 2001 -0.014 -0.018 -0.016 -0.001 0.065 0.048 0.037 -0.016 0.002 -0.007 -0.018 -0.012 - 10.45 51.08 2002 -0.011 -0.026 -0.008 0.018 0.048 0.038 0.015 0.006 0.008 -0.008 -0.022 -0.011 - 10.45 51.08 2003 -0.012 -0.006 -0.018 -0.004 0.043 0.039 0.006 -0.026 0.019 -0.010 -0.020 -0.015 - 10.45 51.08 2004 -0.013 -0.019 -0.009 0.027 0.065 0.055 0.051 -0.004 0.016 -0.001 -0.025 -0.012 - 10.45 51.08 2005 -0.019 -0.007 -0.011 0.012 0.048 0.036 0.025 0.035 0.017 0.008 -0.017 -0.013 - 10.45 51.08 2006 -0.007 -0.008 -0.009 -0.003 0.062 0.051 -0.013 0.019 0.020 -0.006 -0.023 -0.024 - 10.45 51.08 2007 -0.029 -0.018 -0.024 0.008 0.062 0.047 0.036 0.041 0.022 -0.002 -0.016 -0.014 - 10.45 51.08 2008 -0.022 -0.018 -0.015 0.008 0.069 0.043 0.025 0.000 0.005 -0.001 -0.021 -0.013 - 10.45 51.08 2009 -0.007 -0.011 -0.020 0.013 0.066 0.052 0.024 0.013 0.009 -0.012 -0.026 -0.014 - 10.45 51.08 2010 -0.005 -0.007 -0.015 0.013 0.043 0.049 -0.009 0.023 0.020 0.001 -0.020 -0.005 - 10.45 51.08 2011 -0.015 -0.012 -0.011 0.035 0.064 0.035 0.046 0.013 0.019 -0.005 -0.018 -0.020 - 10.45 51.08 2012 -0.021 -0.006 -0.019 0.002 0.054 0.053 0.036 0.021 0.014 -0.001 -0.020 -0.015 diff --git a/rLPJGUESS/inst/extdata/outputsForTests/standard/outDirectory/mnpp.out b/rLPJGUESS/inst/extdata/outputsForTests/standard/outDirectory/mnpp.out deleted file mode 100644 index 1885a07..0000000 --- a/rLPJGUESS/inst/extdata/outputsForTests/standard/outDirectory/mnpp.out +++ /dev/null @@ -1,63 +0,0 @@ - Lon Lat Year Jan Feb Mar Apr May Jun Jul Aug Sep Oct Nov Dec - 10.45 51.08 1951 -0.010 -0.009 -0.009 0.009 0.087 0.105 0.098 0.072 0.050 0.023 -0.007 -0.011 - 10.45 51.08 1952 -0.008 -0.007 -0.011 0.023 0.108 0.108 0.081 0.063 0.040 0.014 -0.006 -0.008 - 10.45 51.08 1953 -0.007 -0.008 -0.007 0.064 0.091 0.082 0.081 0.080 0.056 0.021 -0.012 -0.013 - 10.45 51.08 1954 -0.006 -0.004 -0.012 0.004 0.091 0.091 0.082 0.069 0.042 0.021 -0.006 -0.014 - 10.45 51.08 1955 -0.006 -0.006 -0.008 0.004 0.093 0.099 0.071 0.059 0.048 0.020 -0.006 -0.012 - 10.45 51.08 1956 -0.009 -0.001 -0.011 0.000 0.088 0.086 0.083 0.084 0.055 0.017 -0.007 -0.013 - 10.45 51.08 1957 -0.009 -0.013 -0.001 0.045 0.093 0.094 0.060 0.077 0.044 0.018 -0.015 -0.009 - 10.45 51.08 1958 -0.009 -0.011 -0.006 0.004 0.078 0.090 0.090 0.079 0.052 0.019 -0.009 -0.013 - 10.45 51.08 1959 -0.009 -0.007 -0.006 0.044 0.107 0.096 0.075 0.063 0.079 0.033 -0.012 -0.010 - 10.45 51.08 1960 -0.010 -0.007 -0.011 0.008 0.078 0.101 0.102 0.072 0.046 0.015 -0.008 -0.009 - 10.45 51.08 1961 -0.007 -0.013 -0.007 0.038 0.081 0.098 0.080 0.075 0.045 0.019 -0.013 -0.010 - 10.45 51.08 1962 -0.012 -0.007 -0.008 -0.003 0.073 0.105 0.094 0.082 0.059 0.017 -0.005 -0.006 - 10.45 51.08 1963 -0.002 -0.003 -0.012 0.005 0.085 0.095 0.091 0.072 0.052 0.016 -0.006 -0.005 - 10.45 51.08 1964 -0.005 -0.007 -0.009 0.002 0.103 0.109 0.090 0.073 0.056 0.012 -0.015 -0.010 - 10.45 51.08 1965 -0.010 -0.005 -0.011 0.001 0.072 0.098 0.086 0.093 0.055 0.018 -0.006 -0.012 - 10.45 51.08 1966 -0.006 -0.011 -0.008 0.023 0.110 0.093 0.088 0.076 0.048 0.015 -0.010 -0.011 - 10.45 51.08 1967 -0.010 -0.011 -0.008 0.007 0.084 0.093 0.096 0.069 0.041 0.018 -0.007 -0.010 - 10.45 51.08 1968 -0.008 -0.008 -0.012 0.017 0.089 0.102 0.097 0.067 0.040 0.012 -0.010 -0.006 - 10.45 51.08 1969 -0.009 -0.005 -0.007 -0.007 0.077 0.098 0.086 0.069 0.054 0.021 -0.005 -0.004 - 10.45 51.08 1970 -0.006 -0.007 -0.009 -0.008 0.066 0.097 0.094 0.069 0.056 0.008 -0.008 -0.010 - 10.45 51.08 1971 -0.008 -0.009 -0.010 0.002 0.070 0.091 0.106 0.075 0.061 0.023 -0.006 -0.014 - 10.45 51.08 1972 -0.006 -0.009 -0.012 0.010 0.075 0.112 0.070 0.073 0.045 0.014 -0.006 -0.010 - 10.45 51.08 1973 -0.008 -0.009 -0.012 -0.007 0.073 0.096 0.081 0.082 0.045 0.014 -0.009 -0.009 - 10.45 51.08 1974 -0.013 -0.011 -0.005 0.031 0.087 0.102 0.093 0.066 0.052 0.001 -0.016 -0.017 - 10.45 51.08 1975 -0.015 -0.009 -0.013 -0.001 0.080 0.089 0.085 0.070 0.043 0.006 -0.008 -0.010 - 10.45 51.08 1976 -0.011 -0.007 -0.009 0.003 0.084 0.093 0.071 0.089 0.038 0.012 -0.008 -0.009 - 10.45 51.08 1977 -0.009 -0.011 -0.008 0.012 0.105 0.074 0.085 0.057 0.039 0.016 -0.008 -0.011 - 10.45 51.08 1978 -0.009 -0.007 -0.013 0.008 0.068 0.092 0.093 0.072 0.041 0.016 -0.012 -0.010 - 10.45 51.08 1979 -0.004 -0.005 -0.012 -0.005 0.050 0.088 0.085 0.077 0.048 0.016 -0.008 -0.015 - 10.45 51.08 1980 -0.005 -0.011 -0.011 -0.005 0.056 0.099 0.077 0.075 0.049 0.016 -0.014 -0.010 - 10.45 51.08 1981 -0.006 -0.007 -0.004 0.031 0.082 0.085 0.075 0.066 0.049 0.012 -0.015 -0.006 - 10.45 51.08 1982 -0.007 -0.007 -0.012 0.002 0.061 0.085 0.073 0.067 0.046 0.014 -0.004 -0.011 - 10.45 51.08 1983 -0.014 -0.005 -0.011 0.018 0.079 0.094 0.080 0.066 0.051 0.015 -0.006 -0.009 - 10.45 51.08 1984 -0.010 -0.007 -0.009 -0.006 0.047 0.093 0.081 0.066 0.036 0.017 -0.009 -0.009 - 10.45 51.08 1985 -0.004 -0.005 -0.010 0.007 0.076 0.089 0.100 0.077 0.050 0.012 -0.006 -0.015 - 10.45 51.08 1986 -0.008 -0.002 -0.010 -0.005 0.076 0.085 0.084 0.068 0.049 0.022 -0.004 -0.011 - 10.45 51.08 1987 -0.004 -0.006 -0.007 0.006 0.075 0.084 0.086 0.069 0.040 0.016 -0.009 -0.011 - 10.45 51.08 1988 -0.013 -0.009 -0.010 0.001 0.095 0.085 0.092 0.077 0.045 0.016 -0.008 -0.013 - 10.45 51.08 1989 -0.008 -0.008 -0.007 0.014 0.102 0.094 0.077 0.067 0.040 0.020 -0.005 -0.010 - 10.45 51.08 1990 -0.009 -0.011 0.007 0.029 0.120 0.082 0.097 0.063 0.039 0.017 -0.012 -0.007 - 10.45 51.08 1991 -0.009 -0.004 -0.003 0.039 0.068 0.106 0.082 0.062 0.051 0.015 -0.009 -0.008 - 10.45 51.08 1992 -0.008 -0.008 -0.007 0.016 0.106 0.076 0.079 0.056 0.049 0.002 -0.012 -0.009 - 10.45 51.08 1993 -0.011 -0.005 -0.003 0.039 0.100 0.089 0.077 0.076 0.039 0.008 -0.007 -0.010 - 10.45 51.08 1994 -0.011 -0.006 -0.006 0.023 0.098 0.093 0.057 0.059 0.047 0.010 -0.009 -0.013 - 10.45 51.08 1995 -0.008 -0.011 -0.007 0.013 0.083 0.076 0.066 0.070 0.037 0.017 -0.008 -0.005 - 10.45 51.08 1996 -0.004 -0.004 -0.007 0.006 0.061 0.085 0.088 0.065 0.033 0.014 -0.006 -0.006 - 10.45 51.08 1997 -0.005 -0.010 -0.004 0.014 0.082 0.090 0.078 0.061 0.059 0.009 -0.008 -0.010 - 10.45 51.08 1998 -0.011 -0.010 -0.003 0.039 0.101 0.087 0.075 0.063 0.037 0.006 -0.009 -0.009 - 10.45 51.08 1999 -0.012 -0.007 -0.007 0.026 0.101 0.101 0.072 0.066 0.049 0.010 -0.006 -0.011 - 10.45 51.08 2000 -0.009 -0.010 -0.007 0.025 0.103 0.077 0.070 0.072 0.040 0.018 -0.010 -0.013 - 10.45 51.08 2001 -0.009 -0.010 -0.008 0.014 0.106 0.089 0.087 0.058 0.035 0.021 -0.008 -0.009 - 10.45 51.08 2002 -0.009 -0.011 0.003 0.034 0.084 0.086 0.064 0.056 0.046 0.006 -0.014 -0.008 - 10.45 51.08 2003 -0.009 -0.004 -0.008 0.017 0.092 0.096 0.072 0.058 0.054 0.006 -0.012 -0.010 - 10.45 51.08 2004 -0.008 -0.011 -0.001 0.048 0.093 0.100 0.095 0.064 0.059 0.022 -0.013 -0.009 - 10.45 51.08 2005 -0.011 -0.006 -0.005 0.036 0.082 0.091 0.083 0.073 0.055 0.028 -0.004 -0.009 - 10.45 51.08 2006 -0.006 -0.006 -0.008 0.017 0.105 0.094 0.058 0.063 0.059 0.020 -0.010 -0.015 - 10.45 51.08 2007 -0.016 -0.010 -0.009 0.036 0.107 0.094 0.080 0.079 0.050 0.014 -0.009 -0.011 - 10.45 51.08 2008 -0.014 -0.009 -0.002 0.022 0.113 0.100 0.079 0.065 0.041 0.017 -0.013 -0.010 - 10.45 51.08 2009 -0.006 -0.007 -0.010 0.044 0.102 0.091 0.078 0.075 0.048 0.005 -0.016 -0.010 - 10.45 51.08 2010 -0.005 -0.006 -0.006 0.039 0.070 0.101 0.058 0.059 0.047 0.016 -0.011 -0.005 - 10.45 51.08 2011 -0.011 -0.008 -0.001 0.069 0.116 0.094 0.088 0.058 0.055 0.018 -0.009 -0.014 - 10.45 51.08 2012 -0.012 -0.005 -0.001 0.024 0.102 0.091 0.081 0.074 0.053 0.019 -0.012 -0.012 diff --git a/rLPJGUESS/inst/extdata/outputsForTests/standard/outDirectory/mpet.out b/rLPJGUESS/inst/extdata/outputsForTests/standard/outDirectory/mpet.out deleted file mode 100644 index 7f74c37..0000000 --- a/rLPJGUESS/inst/extdata/outputsForTests/standard/outDirectory/mpet.out +++ /dev/null @@ -1,63 +0,0 @@ - Lon Lat Year Jan Feb Mar Apr May Jun Jul Aug Sep Oct Nov Dec - 10.45 51.08 1951 5.617 10.827 23.618 65.894 87.713 115.842 121.706 100.350 67.624 32.095 10.337 4.959 - 10.45 51.08 1952 5.313 8.959 22.408 69.908 97.581 116.265 132.779 102.531 47.879 26.727 8.813 3.962 - 10.45 51.08 1953 4.643 9.667 39.614 77.178 111.081 99.972 117.476 102.562 66.318 32.144 8.621 4.954 - 10.45 51.08 1954 4.670 8.365 26.327 52.597 105.064 115.066 89.359 92.292 60.278 32.103 11.241 4.773 - 10.45 51.08 1955 5.438 8.868 22.265 55.361 95.146 104.952 97.839 82.933 60.404 30.060 8.890 4.699 - 10.45 51.08 1956 5.873 5.612 25.347 46.410 106.890 90.822 109.804 89.529 61.248 31.033 8.519 4.692 - 10.45 51.08 1957 5.842 11.599 35.146 64.239 91.240 134.680 113.559 90.688 53.953 28.516 8.105 4.399 - 10.45 51.08 1958 5.769 12.257 20.058 44.083 98.062 102.870 119.446 107.593 68.891 31.797 8.619 4.763 - 10.45 51.08 1959 6.209 10.521 31.803 69.661 100.851 121.292 135.053 93.335 77.249 37.761 7.889 4.409 - 10.45 51.08 1960 5.327 9.706 22.598 55.001 94.417 127.864 109.590 90.926 55.575 28.511 11.267 4.413 - 10.45 51.08 1961 5.047 14.534 33.136 56.778 79.613 118.572 103.564 91.430 73.055 33.711 7.522 4.442 - 10.45 51.08 1962 6.412 10.068 22.606 54.637 77.374 116.706 101.487 97.956 65.184 31.280 9.089 4.079 - 10.45 51.08 1963 3.607 7.160 24.203 53.105 96.780 110.342 125.236 96.665 63.509 28.537 12.351 3.975 - 10.45 51.08 1964 5.114 11.185 19.177 55.741 109.334 142.475 131.296 96.800 67.140 26.933 7.651 4.525 - 10.45 51.08 1965 5.929 8.463 23.184 51.941 88.442 110.914 102.347 99.413 59.869 31.702 7.704 4.704 - 10.45 51.08 1966 4.859 12.666 27.149 54.862 109.125 124.357 98.113 94.387 57.500 33.278 7.717 4.608 - 10.45 51.08 1967 6.112 12.852 33.052 51.506 106.155 104.673 137.234 93.454 55.951 34.758 10.155 4.411 - 10.45 51.08 1968 5.213 10.386 32.148 71.861 85.019 112.908 118.603 90.933 54.557 28.498 9.510 3.640 - 10.45 51.08 1969 5.872 9.144 16.905 51.041 96.075 113.305 128.587 99.507 63.348 30.923 12.003 3.181 - 10.45 51.08 1970 4.779 9.229 22.919 41.150 84.897 130.835 115.238 91.370 66.413 25.846 11.252 4.655 - 10.45 51.08 1971 6.107 10.352 21.753 57.862 96.755 93.295 140.097 114.369 63.733 36.218 9.973 5.131 - 10.45 51.08 1972 4.960 10.402 34.547 49.647 86.237 113.611 108.307 89.732 52.599 29.731 10.796 5.224 - 10.45 51.08 1973 5.636 11.083 28.141 42.705 95.814 111.278 114.060 110.348 65.147 29.547 10.460 4.657 - 10.45 51.08 1974 6.834 11.154 30.845 64.953 85.178 102.511 101.370 96.960 66.076 22.181 8.468 5.668 - 10.45 51.08 1975 7.630 11.773 27.170 53.638 93.050 98.506 122.926 119.741 65.082 26.108 9.289 4.591 - 10.45 51.08 1976 5.862 10.443 24.669 57.801 106.913 126.401 140.195 103.009 51.668 29.637 10.416 4.750 - 10.45 51.08 1977 6.115 12.645 30.854 50.575 97.736 89.852 108.289 79.784 55.040 31.121 11.612 4.965 - 10.45 51.08 1978 6.087 9.701 29.865 54.889 83.679 102.567 105.628 91.881 51.902 30.386 10.011 4.478 - 10.45 51.08 1979 4.850 8.903 25.373 46.245 99.211 114.904 95.048 92.063 63.725 32.191 10.146 5.575 - 10.45 51.08 1980 5.070 12.783 21.299 49.021 98.931 106.925 89.525 101.948 63.721 29.628 8.031 4.703 - 10.45 51.08 1981 6.094 9.823 34.229 61.468 96.284 104.019 98.118 92.347 61.990 29.629 9.802 4.050 - 10.45 51.08 1982 5.541 11.904 31.686 62.414 100.568 119.424 124.964 107.130 76.437 29.259 13.398 4.962 - 10.45 51.08 1983 7.665 10.326 28.900 59.251 83.944 116.601 141.151 105.226 66.041 32.283 10.801 4.751 - 10.45 51.08 1984 6.590 10.317 26.031 60.914 73.981 97.212 105.034 95.651 51.519 31.959 11.626 5.448 - 10.45 51.08 1985 5.095 10.464 23.325 59.716 98.876 97.358 128.158 98.437 63.904 32.662 8.958 5.995 - 10.45 51.08 1986 6.311 7.165 27.797 44.006 104.981 115.817 117.193 101.619 55.084 34.892 12.786 5.946 - 10.45 51.08 1987 4.463 9.983 23.203 65.630 83.459 91.342 118.090 87.892 63.130 31.883 9.923 5.082 - 10.45 51.08 1988 7.738 11.706 23.157 63.690 108.191 98.975 121.647 109.402 59.530 29.888 10.400 5.536 - 10.45 51.08 1989 8.872 13.854 40.148 51.244 124.046 118.293 118.357 105.948 63.304 34.297 12.452 6.120 - 10.45 51.08 1990 5.697 15.295 35.883 53.901 114.718 94.225 113.861 107.720 46.110 33.267 7.770 3.863 - 10.45 51.08 1991 5.142 9.172 29.259 56.259 70.527 97.635 132.655 97.257 70.014 31.907 8.123 3.745 - 10.45 51.08 1992 5.090 10.321 26.864 56.336 115.919 104.756 120.396 103.423 59.260 22.401 9.061 4.477 - 10.45 51.08 1993 6.618 9.049 30.879 70.873 111.026 107.599 108.735 98.184 50.776 26.866 6.636 4.932 - 10.45 51.08 1994 6.752 10.680 31.820 57.346 100.033 118.389 145.302 103.177 58.862 28.731 11.894 5.890 - 10.45 51.08 1995 6.744 14.429 30.546 56.367 96.057 94.462 139.449 117.975 51.780 34.244 9.362 3.995 - 10.45 51.08 1996 5.015 11.246 22.960 67.201 76.088 118.914 105.278 94.696 43.762 28.627 10.589 4.524 - 10.45 51.08 1997 5.658 14.895 34.226 60.280 99.516 116.603 106.922 112.496 71.720 29.916 9.855 5.148 - 10.45 51.08 1998 7.911 15.956 33.267 61.918 108.901 114.638 102.107 102.489 52.686 25.462 8.577 5.656 - 10.45 51.08 1999 8.094 12.285 31.446 60.880 109.082 110.439 122.039 99.722 78.502 27.975 9.746 5.662 - 10.45 51.08 2000 7.034 15.061 30.790 70.166 115.599 124.166 84.487 108.474 58.407 31.855 11.830 6.478 - 10.45 51.08 2001 7.191 13.369 24.588 52.795 115.737 98.559 130.579 104.941 47.410 36.507 11.115 4.785 - 10.45 51.08 2002 7.797 16.247 34.079 59.360 92.755 115.043 102.494 97.591 61.054 27.710 10.003 4.797 - 10.45 51.08 2003 6.855 11.106 37.363 72.075 101.874 144.142 121.718 131.885 66.964 26.352 11.757 5.987 - 10.45 51.08 2004 6.629 12.337 34.423 70.921 90.012 108.030 111.960 112.619 71.387 35.341 9.470 5.345 - 10.45 51.08 2005 7.581 10.485 33.416 69.762 105.052 124.905 122.552 89.220 76.367 37.588 12.922 5.312 - 10.45 51.08 2006 6.052 10.532 25.578 60.920 107.417 129.788 161.764 82.094 80.843 35.470 13.302 6.814 - 10.45 51.08 2007 8.383 14.894 39.767 89.512 113.807 123.954 119.031 102.252 57.806 28.898 10.043 5.374 - 10.45 51.08 2008 8.757 16.274 33.324 55.142 110.395 126.398 122.906 98.579 55.655 31.620 9.470 4.952 - 10.45 51.08 2009 6.215 11.023 26.996 83.269 101.360 94.078 118.020 111.762 64.878 26.135 11.961 5.208 - 10.45 51.08 2010 4.784 10.737 33.742 71.143 74.594 125.937 143.133 86.951 55.098 30.911 10.597 3.782 - 10.45 51.08 2011 7.086 12.770 41.747 81.671 116.440 118.128 104.608 94.335 70.885 37.159 12.056 6.022 - 10.45 51.08 2012 7.224 10.657 43.647 55.938 111.921 99.513 114.815 111.913 65.658 32.692 10.492 5.459 diff --git a/rLPJGUESS/inst/extdata/outputsForTests/standard/outDirectory/mra.out b/rLPJGUESS/inst/extdata/outputsForTests/standard/outDirectory/mra.out deleted file mode 100644 index 4547e84..0000000 --- a/rLPJGUESS/inst/extdata/outputsForTests/standard/outDirectory/mra.out +++ /dev/null @@ -1,63 +0,0 @@ - Lon Lat Year Jan Feb Mar Apr May Jun Jul Aug Sep Oct Nov Dec - 10.45 51.08 1951 0.010 0.010 0.011 0.025 0.064 0.084 0.092 0.084 0.066 0.032 0.021 0.012 - 10.45 51.08 1952 0.008 0.007 0.012 0.042 0.075 0.086 0.095 0.088 0.048 0.030 0.012 0.008 - 10.45 51.08 1953 0.007 0.009 0.018 0.050 0.079 0.081 0.092 0.087 0.065 0.042 0.017 0.013 - 10.45 51.08 1954 0.006 0.004 0.015 0.021 0.071 0.088 0.077 0.081 0.063 0.042 0.019 0.014 - 10.45 51.08 1955 0.006 0.006 0.010 0.023 0.068 0.082 0.084 0.078 0.062 0.036 0.016 0.012 - 10.45 51.08 1956 0.010 0.001 0.013 0.020 0.071 0.074 0.087 0.077 0.062 0.038 0.014 0.013 - 10.45 51.08 1957 0.009 0.013 0.023 0.039 0.064 0.092 0.089 0.079 0.055 0.037 0.016 0.009 - 10.45 51.08 1958 0.009 0.013 0.008 0.019 0.072 0.079 0.092 0.090 0.069 0.041 0.017 0.013 - 10.45 51.08 1959 0.009 0.007 0.020 0.044 0.077 0.086 0.100 0.084 0.071 0.040 0.013 0.010 - 10.45 51.08 1960 0.010 0.008 0.015 0.025 0.067 0.091 0.088 0.082 0.059 0.037 0.022 0.009 - 10.45 51.08 1961 0.007 0.014 0.020 0.045 0.061 0.086 0.082 0.080 0.074 0.046 0.013 0.010 - 10.45 51.08 1962 0.012 0.008 0.008 0.027 0.056 0.085 0.082 0.084 0.061 0.039 0.013 0.006 - 10.45 51.08 1963 0.002 0.003 0.013 0.028 0.069 0.084 0.097 0.083 0.064 0.034 0.024 0.005 - 10.45 51.08 1964 0.005 0.008 0.009 0.030 0.080 0.100 0.099 0.085 0.067 0.031 0.017 0.010 - 10.45 51.08 1965 0.010 0.006 0.012 0.022 0.061 0.085 0.084 0.085 0.061 0.037 0.012 0.013 - 10.45 51.08 1966 0.007 0.014 0.014 0.034 0.082 0.091 0.084 0.082 0.060 0.046 0.012 0.011 - 10.45 51.08 1967 0.011 0.012 0.018 0.023 0.072 0.081 0.104 0.086 0.062 0.050 0.017 0.010 - 10.45 51.08 1968 0.008 0.009 0.017 0.036 0.066 0.089 0.093 0.083 0.060 0.040 0.017 0.006 - 10.45 51.08 1969 0.009 0.006 0.007 0.022 0.070 0.083 0.100 0.088 0.064 0.042 0.023 0.004 - 10.45 51.08 1970 0.006 0.007 0.010 0.020 0.059 0.093 0.090 0.084 0.067 0.035 0.023 0.011 - 10.45 51.08 1971 0.008 0.010 0.011 0.026 0.070 0.077 0.102 0.097 0.062 0.041 0.017 0.014 - 10.45 51.08 1972 0.006 0.010 0.018 0.025 0.064 0.087 0.089 0.081 0.052 0.029 0.018 0.010 - 10.45 51.08 1973 0.008 0.009 0.015 0.017 0.064 0.087 0.092 0.095 0.067 0.033 0.016 0.009 - 10.45 51.08 1974 0.014 0.012 0.018 0.035 0.064 0.079 0.084 0.085 0.065 0.023 0.016 0.017 - 10.45 51.08 1975 0.016 0.009 0.014 0.022 0.066 0.078 0.096 0.098 0.069 0.032 0.015 0.010 - 10.45 51.08 1976 0.011 0.007 0.010 0.024 0.070 0.089 0.101 0.087 0.057 0.039 0.018 0.009 - 10.45 51.08 1977 0.010 0.012 0.021 0.023 0.071 0.076 0.087 0.074 0.055 0.041 0.021 0.011 - 10.45 51.08 1978 0.009 0.007 0.018 0.024 0.059 0.081 0.085 0.080 0.054 0.038 0.016 0.010 - 10.45 51.08 1979 0.004 0.005 0.013 0.021 0.057 0.090 0.080 0.081 0.062 0.036 0.014 0.016 - 10.45 51.08 1980 0.005 0.011 0.013 0.019 0.050 0.082 0.076 0.087 0.064 0.034 0.014 0.010 - 10.45 51.08 1981 0.006 0.007 0.022 0.034 0.069 0.080 0.080 0.078 0.061 0.034 0.016 0.006 - 10.45 51.08 1982 0.007 0.007 0.015 0.022 0.059 0.086 0.094 0.089 0.074 0.039 0.024 0.011 - 10.45 51.08 1983 0.014 0.005 0.016 0.032 0.062 0.083 0.100 0.087 0.063 0.038 0.016 0.010 - 10.45 51.08 1984 0.010 0.007 0.010 0.021 0.048 0.074 0.079 0.082 0.052 0.041 0.017 0.010 - 10.45 51.08 1985 0.004 0.006 0.012 0.027 0.069 0.072 0.092 0.082 0.062 0.038 0.010 0.015 - 10.45 51.08 1986 0.009 0.002 0.013 0.019 0.074 0.079 0.089 0.084 0.051 0.042 0.022 0.012 - 10.45 51.08 1987 0.004 0.006 0.008 0.029 0.057 0.070 0.089 0.076 0.064 0.036 0.017 0.011 - 10.45 51.08 1988 0.014 0.010 0.012 0.025 0.078 0.077 0.093 0.091 0.061 0.039 0.015 0.013 - 10.45 51.08 1989 0.009 0.009 0.016 0.023 0.068 0.070 0.074 0.071 0.052 0.035 0.012 0.010 - 10.45 51.08 1990 0.009 0.014 0.021 0.028 0.076 0.067 0.079 0.078 0.044 0.035 0.013 0.008 - 10.45 51.08 1991 0.010 0.005 0.021 0.035 0.051 0.077 0.097 0.085 0.069 0.038 0.014 0.008 - 10.45 51.08 1992 0.009 0.010 0.015 0.027 0.080 0.080 0.091 0.089 0.058 0.025 0.015 0.009 - 10.45 51.08 1993 0.012 0.005 0.015 0.043 0.081 0.079 0.079 0.080 0.050 0.031 0.008 0.011 - 10.45 51.08 1994 0.012 0.007 0.020 0.031 0.074 0.082 0.098 0.085 0.057 0.028 0.021 0.014 - 10.45 51.08 1995 0.009 0.013 0.013 0.028 0.065 0.067 0.091 0.089 0.051 0.043 0.013 0.006 - 10.45 51.08 1996 0.004 0.005 0.009 0.029 0.052 0.078 0.078 0.078 0.042 0.033 0.018 0.006 - 10.45 51.08 1997 0.005 0.013 0.019 0.023 0.067 0.078 0.081 0.089 0.064 0.031 0.014 0.011 - 10.45 51.08 1998 0.013 0.015 0.018 0.039 0.077 0.083 0.079 0.081 0.053 0.030 0.010 0.010 - 10.45 51.08 1999 0.013 0.008 0.017 0.034 0.077 0.081 0.090 0.082 0.074 0.033 0.015 0.012 - 10.45 51.08 2000 0.009 0.013 0.018 0.039 0.084 0.083 0.073 0.089 0.060 0.041 0.020 0.014 - 10.45 51.08 2001 0.010 0.012 0.015 0.026 0.081 0.074 0.094 0.091 0.050 0.048 0.016 0.009 - 10.45 51.08 2002 0.011 0.017 0.020 0.034 0.073 0.086 0.083 0.087 0.060 0.031 0.017 0.009 - 10.45 51.08 2003 0.010 0.005 0.019 0.032 0.078 0.098 0.094 0.103 0.065 0.026 0.019 0.011 - 10.45 51.08 2004 0.009 0.013 0.018 0.043 0.067 0.082 0.089 0.093 0.068 0.042 0.016 0.009 - 10.45 51.08 2005 0.013 0.007 0.017 0.040 0.073 0.087 0.097 0.081 0.074 0.048 0.020 0.010 - 10.45 51.08 2006 0.006 0.007 0.012 0.032 0.081 0.090 0.111 0.079 0.082 0.051 0.027 0.017 - 10.45 51.08 2007 0.018 0.015 0.022 0.048 0.087 0.096 0.095 0.089 0.060 0.036 0.016 0.012 - 10.45 51.08 2008 0.017 0.014 0.018 0.032 0.087 0.096 0.098 0.093 0.059 0.040 0.019 0.011 - 10.45 51.08 2009 0.007 0.009 0.018 0.054 0.082 0.080 0.098 0.101 0.070 0.034 0.025 0.011 - 10.45 51.08 2010 0.005 0.008 0.021 0.041 0.061 0.094 0.108 0.084 0.060 0.037 0.021 0.005 - 10.45 51.08 2011 0.012 0.010 0.021 0.062 0.090 0.095 0.092 0.091 0.076 0.044 0.017 0.016 - 10.45 51.08 2012 0.013 0.008 0.028 0.037 0.091 0.087 0.098 0.104 0.072 0.042 0.020 0.013 diff --git a/rLPJGUESS/inst/extdata/outputsForTests/standard/outDirectory/mrh.out b/rLPJGUESS/inst/extdata/outputsForTests/standard/outDirectory/mrh.out deleted file mode 100644 index ce460fa..0000000 --- a/rLPJGUESS/inst/extdata/outputsForTests/standard/outDirectory/mrh.out +++ /dev/null @@ -1,63 +0,0 @@ - Lon Lat Year Jan Feb Mar Apr May Jun Jul Aug Sep Oct Nov Dec - 10.45 51.08 1951 0.010 0.007 0.008 0.024 0.048 0.046 0.066 0.056 0.053 0.024 0.013 0.008 - 10.45 51.08 1952 0.007 0.001 0.009 0.032 0.043 0.058 0.094 0.082 0.028 0.014 0.008 0.001 - 10.45 51.08 1953 0.002 0.003 0.016 0.040 0.059 0.057 0.063 0.064 0.053 0.035 0.014 0.010 - 10.45 51.08 1954 0.002 0.000 0.011 0.019 0.047 0.070 0.047 0.049 0.045 0.023 0.013 0.008 - 10.45 51.08 1955 0.002 0.004 0.002 0.018 0.045 0.052 0.058 0.045 0.044 0.025 0.008 0.005 - 10.45 51.08 1956 0.008 0.000 0.005 0.016 0.043 0.045 0.047 0.046 0.041 0.027 0.008 0.007 - 10.45 51.08 1957 0.003 0.011 0.019 0.025 0.037 0.063 0.068 0.047 0.034 0.018 0.011 0.004 - 10.45 51.08 1958 0.006 0.009 0.002 0.012 0.044 0.048 0.058 0.058 0.050 0.025 0.009 0.006 - 10.45 51.08 1959 0.007 0.002 0.018 0.031 0.045 0.052 0.086 0.059 0.047 0.027 0.007 0.003 - 10.45 51.08 1960 0.005 0.002 0.010 0.023 0.034 0.059 0.058 0.047 0.033 0.016 0.011 0.005 - 10.45 51.08 1961 0.002 0.007 0.021 0.025 0.028 0.042 0.067 0.049 0.056 0.041 0.012 0.004 - 10.45 51.08 1962 0.006 0.005 0.001 0.020 0.033 0.056 0.048 0.060 0.037 0.028 0.008 0.001 - 10.45 51.08 1963 0.000 0.000 0.005 0.020 0.040 0.054 0.061 0.046 0.038 0.019 0.011 0.002 - 10.45 51.08 1964 0.000 0.002 0.002 0.020 0.041 0.071 0.065 0.054 0.045 0.019 0.008 0.005 - 10.45 51.08 1965 0.004 0.001 0.003 0.021 0.032 0.043 0.052 0.047 0.032 0.024 0.006 0.004 - 10.45 51.08 1966 0.002 0.006 0.012 0.020 0.047 0.055 0.037 0.043 0.032 0.030 0.005 0.004 - 10.45 51.08 1967 0.004 0.008 0.014 0.017 0.043 0.036 0.064 0.054 0.030 0.028 0.010 0.002 - 10.45 51.08 1968 0.002 0.005 0.006 0.026 0.034 0.048 0.063 0.049 0.033 0.019 0.008 0.001 - 10.45 51.08 1969 0.002 0.002 0.000 0.013 0.036 0.039 0.066 0.068 0.028 0.023 0.013 0.001 - 10.45 51.08 1970 0.000 0.000 0.002 0.012 0.031 0.058 0.058 0.040 0.036 0.019 0.009 0.005 - 10.45 51.08 1971 0.001 0.008 0.004 0.022 0.044 0.042 0.062 0.072 0.035 0.022 0.008 0.005 - 10.45 51.08 1972 0.002 0.003 0.011 0.020 0.028 0.038 0.051 0.036 0.026 0.014 0.009 0.004 - 10.45 51.08 1973 0.002 0.005 0.008 0.013 0.036 0.053 0.065 0.056 0.038 0.014 0.006 0.001 - 10.45 51.08 1974 0.009 0.009 0.010 0.025 0.028 0.035 0.039 0.049 0.039 0.013 0.007 0.007 - 10.45 51.08 1975 0.012 0.006 0.009 0.012 0.034 0.039 0.058 0.067 0.039 0.021 0.007 0.004 - 10.45 51.08 1976 0.007 0.001 0.004 0.020 0.039 0.045 0.082 0.049 0.038 0.022 0.007 0.003 - 10.45 51.08 1977 0.002 0.007 0.015 0.011 0.033 0.039 0.042 0.032 0.027 0.018 0.010 0.003 - 10.45 51.08 1978 0.006 0.001 0.011 0.017 0.028 0.054 0.039 0.045 0.026 0.016 0.008 0.003 - 10.45 51.08 1979 0.000 0.000 0.005 0.013 0.030 0.060 0.039 0.046 0.035 0.021 0.005 0.006 - 10.45 51.08 1980 0.001 0.006 0.007 0.014 0.026 0.047 0.037 0.059 0.037 0.017 0.005 0.003 - 10.45 51.08 1981 0.003 0.002 0.011 0.025 0.031 0.048 0.058 0.045 0.037 0.018 0.008 0.002 - 10.45 51.08 1982 0.000 0.003 0.009 0.021 0.039 0.073 0.071 0.071 0.062 0.029 0.015 0.006 - 10.45 51.08 1983 0.011 0.004 0.011 0.016 0.032 0.049 0.078 0.059 0.042 0.028 0.010 0.003 - 10.45 51.08 1984 0.010 0.003 0.004 0.014 0.025 0.037 0.045 0.048 0.031 0.021 0.009 0.005 - 10.45 51.08 1985 0.000 0.001 0.006 0.024 0.043 0.046 0.056 0.052 0.039 0.035 0.006 0.006 - 10.45 51.08 1986 0.003 0.001 0.005 0.011 0.044 0.043 0.066 0.058 0.023 0.022 0.010 0.006 - 10.45 51.08 1987 0.001 0.000 0.001 0.020 0.030 0.029 0.056 0.038 0.039 0.020 0.009 0.003 - 10.45 51.08 1988 0.010 0.007 0.006 0.019 0.048 0.052 0.050 0.062 0.041 0.029 0.009 0.004 - 10.45 51.08 1989 0.010 0.007 0.017 0.025 0.047 0.056 0.076 0.075 0.054 0.031 0.014 0.005 - 10.45 51.08 1990 0.006 0.014 0.020 0.019 0.052 0.043 0.060 0.084 0.038 0.031 0.014 0.004 - 10.45 51.08 1991 0.009 0.001 0.020 0.025 0.030 0.054 0.092 0.067 0.065 0.041 0.012 0.004 - 10.45 51.08 1992 0.009 0.006 0.015 0.021 0.059 0.072 0.067 0.088 0.042 0.023 0.009 0.006 - 10.45 51.08 1993 0.007 0.001 0.010 0.029 0.071 0.052 0.050 0.061 0.034 0.024 0.005 0.004 - 10.45 51.08 1994 0.009 0.004 0.013 0.019 0.048 0.051 0.080 0.076 0.034 0.019 0.014 0.007 - 10.45 51.08 1995 0.003 0.011 0.011 0.020 0.038 0.038 0.068 0.075 0.031 0.027 0.010 0.001 - 10.45 51.08 1996 0.000 0.000 0.004 0.020 0.032 0.056 0.043 0.052 0.027 0.021 0.011 0.003 - 10.45 51.08 1997 0.000 0.007 0.016 0.015 0.044 0.060 0.053 0.067 0.047 0.024 0.007 0.004 - 10.45 51.08 1998 0.011 0.007 0.014 0.024 0.045 0.053 0.050 0.067 0.027 0.015 0.006 0.002 - 10.45 51.08 1999 0.010 0.003 0.011 0.023 0.042 0.045 0.054 0.057 0.054 0.026 0.009 0.005 - 10.45 51.08 2000 0.005 0.007 0.011 0.023 0.060 0.059 0.042 0.055 0.032 0.022 0.013 0.009 - 10.45 51.08 2001 0.005 0.008 0.008 0.014 0.041 0.041 0.050 0.074 0.033 0.028 0.010 0.003 - 10.45 51.08 2002 0.002 0.014 0.011 0.016 0.036 0.048 0.049 0.050 0.038 0.014 0.008 0.003 - 10.45 51.08 2003 0.003 0.002 0.010 0.021 0.049 0.058 0.066 0.084 0.035 0.016 0.008 0.005 - 10.45 51.08 2004 0.005 0.007 0.009 0.021 0.027 0.045 0.044 0.068 0.042 0.023 0.011 0.003 - 10.45 51.08 2005 0.008 0.001 0.006 0.024 0.035 0.055 0.058 0.038 0.038 0.020 0.013 0.003 - 10.45 51.08 2006 0.001 0.002 0.001 0.020 0.043 0.043 0.071 0.044 0.039 0.026 0.014 0.009 - 10.45 51.08 2007 0.013 0.008 0.015 0.029 0.045 0.047 0.044 0.038 0.028 0.016 0.007 0.004 - 10.45 51.08 2008 0.009 0.009 0.012 0.014 0.044 0.057 0.054 0.065 0.035 0.017 0.008 0.003 - 10.45 51.08 2009 0.001 0.003 0.010 0.031 0.036 0.039 0.053 0.062 0.039 0.017 0.009 0.004 - 10.45 51.08 2010 0.000 0.000 0.009 0.025 0.027 0.053 0.067 0.036 0.027 0.014 0.009 0.000 - 10.45 51.08 2011 0.004 0.004 0.010 0.035 0.052 0.058 0.043 0.046 0.036 0.023 0.009 0.006 - 10.45 51.08 2012 0.009 0.001 0.018 0.022 0.048 0.038 0.045 0.054 0.039 0.020 0.008 0.003 diff --git a/rLPJGUESS/inst/extdata/outputsForTests/standard/outDirectory/mrunoff.out b/rLPJGUESS/inst/extdata/outputsForTests/standard/outDirectory/mrunoff.out deleted file mode 100644 index 10d37ab..0000000 --- a/rLPJGUESS/inst/extdata/outputsForTests/standard/outDirectory/mrunoff.out +++ /dev/null @@ -1,63 +0,0 @@ - Lon Lat Year Jan Feb Mar Apr May Jun Jul Aug Sep Oct Nov Dec - 10.45 51.08 1951 11.059 20.156 22.173 4.558 0.749 76.994 0.000 8.616 2.409 0.720 44.491 9.323 - 10.45 51.08 1952 19.767 31.103 53.221 24.965 11.648 0.775 0.000 0.000 71.882 47.820 65.237 28.721 - 10.45 51.08 1953 30.997 49.512 0.922 0.000 0.000 7.851 0.728 1.313 0.000 0.000 0.000 9.376 - 10.45 51.08 1954 32.045 12.860 9.310 23.147 1.620 0.000 11.812 11.281 11.691 14.639 10.207 33.370 - 10.45 51.08 1955 30.747 29.143 38.486 17.192 1.657 1.420 14.957 19.495 4.682 6.273 10.784 36.304 - 10.45 51.08 1956 19.749 0.000 50.986 32.925 1.767 34.765 94.645 16.301 3.098 14.952 20.341 12.055 - 10.45 51.08 1957 23.917 28.229 16.977 5.896 0.695 0.000 2.810 3.839 18.173 9.474 21.708 21.569 - 10.45 51.08 1958 37.439 20.703 74.531 19.123 13.801 28.833 25.776 3.667 4.277 18.504 19.977 29.766 - 10.45 51.08 1959 18.722 4.512 5.224 4.853 1.211 0.702 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1960 38.293 8.629 16.763 8.483 22.997 0.000 0.000 0.000 1.018 79.541 24.249 31.938 - 10.45 51.08 1961 45.868 33.967 12.335 46.244 44.716 43.386 0.000 0.000 0.000 0.000 0.000 33.603 - 10.45 51.08 1962 21.163 21.350 22.014 13.785 12.881 0.000 0.000 0.000 0.000 0.000 0.000 1.602 - 10.45 51.08 1963 1.676 1.948 51.398 10.087 4.109 6.760 5.740 13.720 3.703 13.248 25.684 3.205 - 10.45 51.08 1964 6.753 22.708 10.898 23.188 41.107 0.000 0.000 0.000 0.000 0.000 0.000 0.000 - 10.45 51.08 1965 17.151 9.898 39.355 17.577 8.013 19.152 0.216 4.332 2.654 2.167 16.812 63.451 - 10.45 51.08 1966 16.857 33.280 15.407 25.408 0.241 5.664 34.228 28.288 3.534 43.474 30.658 43.759 - 10.45 51.08 1967 19.131 15.676 25.971 10.610 2.034 18.314 0.000 0.000 16.004 9.468 11.770 19.638 - 10.45 51.08 1968 28.254 22.239 23.892 7.529 9.749 1.660 0.000 0.000 13.471 29.041 15.293 5.925 - 10.45 51.08 1969 19.691 10.860 17.551 67.122 40.837 21.199 0.000 0.000 5.060 0.000 9.866 0.225 - 10.45 51.08 1970 10.760 66.428 26.263 31.528 24.218 1.728 0.000 28.848 0.001 19.622 22.037 14.353 - 10.45 51.08 1971 17.679 16.583 8.621 8.038 0.625 12.994 0.347 0.000 0.000 0.000 16.200 5.411 - 10.45 51.08 1972 0.000 7.963 11.942 17.806 10.973 13.367 33.166 43.319 2.255 4.500 17.091 1.898 - 10.45 51.08 1973 11.680 15.139 18.097 14.381 7.761 0.000 0.000 0.000 0.000 26.498 9.072 26.859 - 10.45 51.08 1974 13.838 17.562 14.435 0.000 8.708 12.949 16.564 1.405 2.369 52.058 14.142 51.755 - 10.45 51.08 1975 7.878 12.104 15.625 21.478 4.286 7.043 0.239 0.000 0.000 1.310 10.759 7.009 - 10.45 51.08 1976 48.178 10.499 8.238 3.837 0.340 14.858 0.000 0.000 0.000 0.000 0.000 1.602 - 10.45 51.08 1977 20.623 19.008 25.754 13.293 2.463 13.133 6.731 61.907 8.018 7.626 58.988 30.653 - 10.45 51.08 1978 11.714 8.195 18.611 5.434 11.501 0.000 0.000 1.441 16.628 13.707 1.286 20.518 - 10.45 51.08 1979 2.076 3.408 108.965 20.300 6.527 0.296 5.429 3.042 0.741 1.426 21.417 33.258 - 10.45 51.08 1980 16.705 19.556 13.330 20.827 2.045 3.769 12.590 0.000 0.000 3.478 14.136 23.499 - 10.45 51.08 1981 14.973 19.648 31.305 8.091 17.019 6.855 1.187 47.213 8.458 24.507 33.954 33.230 - 10.45 51.08 1982 39.772 1.544 13.224 5.702 5.576 0.000 0.000 0.000 0.000 0.000 0.901 10.978 - 10.45 51.08 1983 17.164 7.164 15.096 78.758 28.778 1.154 0.000 0.000 0.000 0.000 0.971 8.649 - 10.45 51.08 1984 20.299 23.514 9.131 28.732 52.894 10.923 6.015 9.386 17.489 23.823 26.166 7.013 - 10.45 51.08 1985 17.313 7.993 13.124 7.907 3.456 9.312 0.997 1.443 1.334 0.000 0.431 21.562 - 10.45 51.08 1986 26.960 1.796 38.552 40.274 13.018 15.289 0.000 0.000 10.390 24.345 4.359 23.103 - 10.45 51.08 1987 32.986 26.042 69.719 8.156 8.895 52.687 8.255 19.575 34.053 8.642 28.774 19.577 - 10.45 51.08 1988 17.911 21.211 55.606 17.715 0.000 1.776 7.203 0.164 0.000 0.000 7.853 51.867 - 10.45 51.08 1989 13.807 11.444 22.081 14.258 1.363 3.041 0.000 2.171 0.797 8.691 31.268 35.353 - 10.45 51.08 1990 9.411 16.169 19.342 21.300 0.000 26.099 7.656 0.000 11.470 5.640 28.248 22.616 - 10.45 51.08 1991 16.572 7.642 8.970 2.829 4.331 0.136 0.000 9.392 0.000 0.000 0.000 6.057 - 10.45 51.08 1992 8.178 10.980 51.706 10.340 4.002 0.000 29.906 0.000 0.188 14.322 39.650 34.638 - 10.45 51.08 1993 19.181 16.774 12.314 4.968 0.000 10.965 35.568 4.356 10.391 14.224 13.455 65.316 - 10.45 51.08 1994 27.583 15.886 29.188 71.337 11.799 5.119 2.269 5.642 15.149 6.586 21.904 20.251 - 10.45 51.08 1995 33.035 31.419 11.651 15.572 8.013 39.817 18.185 0.000 32.634 5.203 13.218 9.760 - 10.45 51.08 1996 1.690 15.960 12.577 5.475 23.964 1.959 23.153 23.859 14.224 18.252 29.474 37.900 - 10.45 51.08 1997 8.928 32.420 29.983 14.454 6.325 0.000 51.423 1.722 0.997 14.132 9.961 26.892 - 10.45 51.08 1998 13.075 8.020 21.808 15.189 1.893 4.091 11.944 0.274 23.890 70.705 48.302 6.263 - 10.45 51.08 1999 16.783 16.194 18.830 12.844 1.241 13.898 22.509 2.150 0.000 3.881 23.925 30.950 - 10.45 51.08 2000 23.947 39.857 42.803 6.680 1.204 0.000 2.351 3.635 15.792 14.401 11.912 7.962 - 10.45 51.08 2001 11.431 9.793 61.533 20.175 5.458 8.334 16.051 0.000 11.607 11.570 41.660 21.222 - 10.45 51.08 2002 10.097 28.916 30.053 13.027 17.739 32.588 23.980 14.058 6.182 31.372 77.092 86.192 - 10.45 51.08 2003 25.522 9.233 11.448 3.141 7.106 9.039 0.000 0.000 0.000 1.815 10.106 16.094 - 10.45 51.08 2004 18.905 13.384 10.577 9.053 80.612 1.386 14.633 0.000 0.000 0.000 20.585 9.820 - 10.45 51.08 2005 8.395 26.435 24.646 10.502 7.515 0.000 0.000 13.784 7.600 5.815 11.377 15.157 - 10.45 51.08 2006 10.639 10.301 25.167 21.005 5.031 9.073 17.656 11.874 0.473 7.066 15.982 9.790 - 10.45 51.08 2007 24.687 18.446 25.366 1.606 9.594 12.573 35.473 78.339 68.396 3.511 33.402 23.029 - 10.45 51.08 2008 16.591 9.387 28.352 32.296 2.613 0.000 4.316 0.000 0.000 20.995 11.670 27.313 - 10.45 51.08 2009 5.186 20.153 27.214 6.309 17.408 9.694 8.556 0.000 0.000 22.662 43.183 68.658 - 10.45 51.08 2010 12.396 46.353 12.858 3.618 38.351 4.633 22.707 57.681 24.127 5.985 60.761 9.457 - 10.45 51.08 2011 97.481 7.843 4.258 1.933 0.000 0.000 5.843 11.376 4.540 6.327 0.000 20.280 - 10.45 51.08 2012 38.625 7.383 3.964 3.001 1.537 13.637 26.676 0.212 1.477 4.285 19.038 35.133 diff --git a/rLPJGUESS/inst/extdata/outputsForTests/standard/outDirectory/mwcont_lower.out b/rLPJGUESS/inst/extdata/outputsForTests/standard/outDirectory/mwcont_lower.out deleted file mode 100644 index ff40cdc..0000000 --- a/rLPJGUESS/inst/extdata/outputsForTests/standard/outDirectory/mwcont_lower.out +++ /dev/null @@ -1,63 +0,0 @@ - Lon Lat Year Jan Feb Mar Apr May Jun Jul Aug Sep Oct Nov Dec - 10.45 51.08 1951 0.990 1.000 1.000 0.996 0.988 0.987 0.980 0.989 0.985 0.986 0.999 1.000 - 10.45 51.08 1952 1.000 1.000 0.997 0.981 0.991 0.973 0.896 0.799 0.895 0.998 0.999 0.999 - 10.45 51.08 1953 1.000 0.999 0.997 0.985 0.937 0.928 0.973 0.972 0.932 0.924 0.965 0.991 - 10.45 51.08 1954 0.999 0.999 1.000 0.998 0.974 0.918 0.951 0.993 0.994 0.996 1.000 1.000 - 10.45 51.08 1955 1.000 0.997 0.997 0.997 0.992 0.979 0.986 0.983 0.985 0.995 1.000 1.000 - 10.45 51.08 1956 1.000 1.000 0.999 0.997 0.988 0.986 0.991 0.994 0.994 0.997 1.000 1.000 - 10.45 51.08 1957 1.000 1.000 0.999 0.993 0.984 0.957 0.953 0.986 0.997 0.996 0.999 1.000 - 10.45 51.08 1958 1.000 1.000 0.996 0.997 0.995 0.969 0.968 0.961 0.970 0.995 0.999 1.000 - 10.45 51.08 1959 1.000 1.000 0.999 0.995 0.977 0.967 0.899 0.837 0.784 0.737 0.851 0.938 - 10.45 51.08 1960 1.000 1.000 1.000 0.997 0.990 0.964 0.911 0.921 0.984 0.998 1.000 1.000 - 10.45 51.08 1961 1.000 1.000 0.999 0.997 0.995 0.986 0.933 0.942 0.942 0.924 0.959 0.999 - 10.45 51.08 1962 1.000 1.000 0.997 0.998 0.997 0.959 0.928 0.904 0.897 0.898 0.909 0.972 - 10.45 51.08 1963 1.000 1.000 0.998 0.998 0.992 0.981 0.971 0.970 0.980 0.998 1.000 1.000 - 10.45 51.08 1964 1.000 1.000 1.000 0.998 0.988 0.944 0.869 0.836 0.818 0.836 0.897 0.964 - 10.45 51.08 1965 0.999 1.000 0.999 0.999 0.995 0.984 0.981 0.986 0.991 0.997 0.999 1.000 - 10.45 51.08 1966 1.000 0.997 0.999 0.999 0.983 0.967 0.988 0.983 0.995 0.990 0.999 1.000 - 10.45 51.08 1967 1.000 1.000 0.999 0.998 0.983 0.994 0.967 0.949 0.988 0.998 0.999 1.000 - 10.45 51.08 1968 1.000 0.999 0.999 0.995 0.994 0.989 0.960 0.952 0.995 0.996 0.999 1.000 - 10.45 51.08 1969 1.000 1.000 1.000 0.999 0.994 0.979 0.953 0.890 0.949 0.967 0.997 1.000 - 10.45 51.08 1970 1.000 1.000 1.000 0.999 0.997 0.973 0.960 0.987 0.985 0.996 1.000 1.000 - 10.45 51.08 1971 1.000 1.000 1.000 0.997 0.986 0.995 0.948 0.857 0.822 0.832 0.889 0.991 - 10.45 51.08 1972 1.000 1.000 0.997 0.999 0.994 0.991 0.989 0.991 0.992 0.993 0.999 1.000 - 10.45 51.08 1973 1.000 1.000 1.000 0.999 0.992 0.972 0.934 0.936 0.909 0.974 0.999 1.000 - 10.45 51.08 1974 1.000 1.000 0.999 0.985 0.994 0.995 0.996 0.977 0.987 0.998 1.000 1.000 - 10.45 51.08 1975 1.000 1.000 1.000 0.998 0.991 0.978 0.975 0.919 0.916 0.965 0.999 1.000 - 10.45 51.08 1976 1.000 1.000 1.000 0.997 0.985 0.959 0.864 0.817 0.785 0.817 0.890 0.985 - 10.45 51.08 1977 1.000 1.000 0.999 0.998 0.992 0.974 0.989 0.994 0.996 0.997 0.999 1.000 - 10.45 51.08 1978 1.000 1.000 1.000 0.996 0.995 0.959 0.969 0.981 0.998 0.995 0.998 1.000 - 10.45 51.08 1979 1.000 1.000 0.999 0.998 0.996 0.989 0.993 0.991 0.985 0.997 1.000 1.000 - 10.45 51.08 1980 1.000 1.000 1.000 0.999 0.985 0.978 0.995 0.954 0.946 0.980 1.000 1.000 - 10.45 51.08 1981 1.000 0.999 0.999 0.994 0.993 0.995 0.988 0.993 0.987 0.997 1.000 0.999 - 10.45 51.08 1982 1.000 0.999 1.000 0.998 0.992 0.955 0.944 0.918 0.881 0.910 0.966 1.000 - 10.45 51.08 1983 1.000 1.000 1.000 0.997 0.997 0.990 0.952 0.927 0.934 0.964 0.974 1.000 - 10.45 51.08 1984 1.000 1.000 1.000 0.996 0.996 0.994 0.994 0.992 0.995 0.999 0.997 1.000 - 10.45 51.08 1985 1.000 1.000 1.000 0.997 0.987 0.988 0.985 0.988 0.993 0.984 0.996 1.000 - 10.45 51.08 1986 1.000 1.000 1.000 0.996 0.996 0.993 0.956 0.951 0.995 0.992 0.999 1.000 - 10.45 51.08 1987 0.999 0.999 0.999 0.997 0.995 0.995 0.987 0.997 0.995 0.998 1.000 1.000 - 10.45 51.08 1988 1.000 1.000 0.999 0.997 0.983 0.955 0.989 0.978 0.960 0.970 0.992 1.000 - 10.45 51.08 1989 1.000 1.000 1.000 0.999 0.985 0.984 0.984 0.987 0.982 0.998 1.000 1.000 - 10.45 51.08 1990 1.000 1.000 0.998 0.999 0.988 0.990 0.987 0.949 0.994 0.996 1.000 1.000 - 10.45 51.08 1991 1.000 1.000 0.999 0.996 0.996 0.979 0.959 0.947 0.921 0.903 0.926 0.964 - 10.45 51.08 1992 1.000 1.000 0.999 0.998 0.983 0.946 0.974 0.957 0.987 0.998 1.000 1.000 - 10.45 51.08 1993 1.000 0.999 0.999 0.996 0.965 0.992 0.992 0.988 0.996 0.999 1.000 1.000 - 10.45 51.08 1994 1.000 1.000 1.000 0.996 0.993 0.991 0.984 0.973 0.997 0.996 1.000 1.000 - 10.45 51.08 1995 1.000 1.000 1.000 0.999 0.994 0.996 0.988 0.968 0.997 0.996 1.000 1.000 - 10.45 51.08 1996 1.000 1.000 1.000 0.998 0.998 0.991 0.995 0.993 0.998 0.999 1.000 1.000 - 10.45 51.08 1997 0.999 1.000 0.999 0.999 0.996 0.968 0.979 0.982 0.992 0.995 1.000 1.000 - 10.45 51.08 1998 1.000 1.000 0.999 0.998 0.980 0.994 0.997 0.981 0.996 0.999 1.000 1.000 - 10.45 51.08 1999 1.000 1.000 1.000 0.998 0.990 0.995 0.992 0.986 0.985 0.998 0.999 1.000 - 10.45 51.08 2000 1.000 1.000 0.999 0.996 0.978 0.960 0.983 0.993 0.997 0.998 1.000 1.000 - 10.45 51.08 2001 1.000 1.000 0.998 0.998 0.991 0.992 0.991 0.965 0.985 0.997 1.000 1.000 - 10.45 51.08 2002 1.000 1.000 0.999 0.994 0.997 0.991 0.988 0.995 0.993 0.999 1.000 1.000 - 10.45 51.08 2003 1.000 1.000 0.999 0.997 0.993 0.992 0.977 0.916 0.904 0.975 1.000 1.000 - 10.45 51.08 2004 1.000 0.999 0.999 0.996 0.992 0.991 0.997 0.965 0.963 0.986 0.999 1.000 - 10.45 51.08 2005 0.999 1.000 0.999 0.998 0.995 0.974 0.962 0.996 0.994 0.994 0.999 1.000 - 10.45 51.08 2006 1.000 1.000 1.000 0.998 0.987 0.985 0.940 0.956 0.984 0.995 1.000 1.000 - 10.45 51.08 2007 1.000 1.000 1.000 0.990 0.980 0.982 0.994 0.992 0.996 0.997 1.000 1.000 - 10.45 51.08 2008 1.000 1.000 1.000 0.998 0.982 0.960 0.983 0.962 0.962 0.998 1.000 1.000 - 10.45 51.08 2009 1.000 1.000 1.000 0.996 0.996 0.996 0.993 0.966 0.964 0.999 0.998 1.000 - 10.45 51.08 2010 1.000 1.000 0.999 0.995 0.995 0.980 0.940 0.994 0.998 0.996 0.998 1.000 - 10.45 51.08 2011 1.000 1.000 0.999 0.991 0.967 0.927 0.990 0.996 0.995 0.994 0.997 1.000 - 10.45 51.08 2012 1.000 1.000 0.998 0.997 0.987 0.991 0.996 0.986 0.994 0.997 1.000 0.999 diff --git a/rLPJGUESS/inst/extdata/outputsForTests/standard/outDirectory/mwcont_upper.out b/rLPJGUESS/inst/extdata/outputsForTests/standard/outDirectory/mwcont_upper.out deleted file mode 100644 index d5f4461..0000000 --- a/rLPJGUESS/inst/extdata/outputsForTests/standard/outDirectory/mwcont_upper.out +++ /dev/null @@ -1,63 +0,0 @@ - Lon Lat Year Jan Feb Mar Apr May Jun Jul Aug Sep Oct Nov Dec - 10.45 51.08 1951 0.836 0.855 0.818 0.548 0.400 0.762 0.553 0.680 0.555 0.528 0.851 0.904 - 10.45 51.08 1952 0.909 0.926 0.909 0.748 0.704 0.492 0.272 0.232 0.785 0.922 0.921 0.938 - 10.45 51.08 1953 0.918 0.944 0.716 0.437 0.374 0.557 0.618 0.481 0.339 0.426 0.655 0.637 - 10.45 51.08 1954 0.810 0.873 0.742 0.669 0.450 0.399 0.680 0.682 0.601 0.745 0.733 0.810 - 10.45 51.08 1955 0.941 0.928 0.918 0.728 0.485 0.494 0.673 0.796 0.627 0.590 0.807 0.863 - 10.45 51.08 1956 0.907 0.864 0.826 0.723 0.578 0.749 0.803 0.653 0.540 0.625 0.797 0.804 - 10.45 51.08 1957 0.895 0.836 0.731 0.557 0.480 0.503 0.635 0.636 0.586 0.848 0.883 0.894 - 10.45 51.08 1958 0.924 0.838 0.904 0.747 0.640 0.686 0.643 0.579 0.512 0.750 0.918 0.892 - 10.45 51.08 1959 0.909 0.803 0.624 0.555 0.498 0.546 0.196 0.464 0.320 0.208 0.824 0.843 - 10.45 51.08 1960 0.895 0.886 0.763 0.540 0.641 0.482 0.356 0.556 0.719 0.888 0.866 0.893 - 10.45 51.08 1961 0.939 0.874 0.644 0.773 0.813 0.739 0.374 0.486 0.405 0.310 0.539 0.834 - 10.45 51.08 1962 0.895 0.894 0.910 0.691 0.572 0.363 0.479 0.395 0.488 0.389 0.389 0.619 - 10.45 51.08 1963 0.709 0.712 0.856 0.716 0.507 0.523 0.562 0.701 0.528 0.689 0.783 0.888 - 10.45 51.08 1964 0.873 0.863 0.743 0.697 0.681 0.446 0.418 0.498 0.428 0.531 0.659 0.728 - 10.45 51.08 1965 0.854 0.897 0.902 0.644 0.628 0.641 0.538 0.549 0.561 0.470 0.659 0.916 - 10.45 51.08 1966 0.903 0.930 0.747 0.690 0.507 0.544 0.820 0.645 0.639 0.562 0.912 0.916 - 10.45 51.08 1967 0.918 0.808 0.735 0.627 0.461 0.715 0.508 0.532 0.742 0.694 0.715 0.792 - 10.45 51.08 1968 0.917 0.882 0.838 0.568 0.625 0.492 0.406 0.476 0.650 0.824 0.806 0.769 - 10.45 51.08 1969 0.784 0.802 0.898 0.823 0.743 0.731 0.427 0.361 0.723 0.538 0.646 0.720 - 10.45 51.08 1970 0.750 0.937 0.897 0.813 0.683 0.443 0.450 0.771 0.566 0.690 0.895 0.866 - 10.45 51.08 1971 0.846 0.776 0.687 0.566 0.518 0.589 0.309 0.237 0.358 0.535 0.739 0.882 - 10.45 51.08 1972 0.813 0.808 0.780 0.632 0.641 0.673 0.604 0.829 0.589 0.491 0.734 0.853 - 10.45 51.08 1973 0.814 0.874 0.813 0.622 0.541 0.419 0.411 0.398 0.585 0.803 0.891 0.904 - 10.45 51.08 1974 0.877 0.828 0.802 0.506 0.566 0.606 0.688 0.534 0.494 0.691 0.877 0.917 - 10.45 51.08 1975 0.891 0.823 0.762 0.734 0.626 0.562 0.527 0.331 0.510 0.571 0.657 0.693 - 10.45 51.08 1976 0.897 0.855 0.677 0.530 0.424 0.581 0.243 0.331 0.305 0.585 0.664 0.755 - 10.45 51.08 1977 0.744 0.769 0.797 0.678 0.498 0.578 0.675 0.794 0.699 0.686 0.900 0.916 - 10.45 51.08 1978 0.865 0.811 0.726 0.552 0.591 0.387 0.517 0.560 0.623 0.794 0.675 0.755 - 10.45 51.08 1979 0.835 0.863 0.908 0.801 0.591 0.468 0.629 0.476 0.489 0.498 0.800 0.915 - 10.45 51.08 1980 0.876 0.821 0.663 0.642 0.541 0.488 0.561 0.338 0.439 0.659 0.766 0.890 - 10.45 51.08 1981 0.922 0.905 0.836 0.603 0.743 0.636 0.420 0.654 0.512 0.883 0.871 0.943 - 10.45 51.08 1982 0.919 0.866 0.670 0.494 0.515 0.359 0.409 0.392 0.225 0.541 0.581 0.612 - 10.45 51.08 1983 0.638 0.674 0.657 0.847 0.699 0.536 0.344 0.514 0.512 0.489 0.428 0.553 - 10.45 51.08 1984 0.662 0.852 0.748 0.789 0.748 0.693 0.583 0.647 0.734 0.800 0.798 0.911 - 10.45 51.08 1985 0.917 0.879 0.752 0.608 0.426 0.545 0.464 0.496 0.494 0.339 0.364 0.696 - 10.45 51.08 1986 0.910 0.864 0.845 0.870 0.659 0.646 0.392 0.506 0.677 0.699 0.822 0.746 - 10.45 51.08 1987 0.941 0.924 0.946 0.678 0.618 0.833 0.570 0.702 0.668 0.733 0.750 0.909 - 10.45 51.08 1988 0.892 0.857 0.885 0.713 0.421 0.418 0.633 0.399 0.384 0.388 0.494 0.868 - 10.45 51.08 1989 0.878 0.755 0.749 0.586 0.507 0.513 0.393 0.402 0.433 0.596 0.891 0.920 - 10.45 51.08 1990 0.888 0.805 0.802 0.672 0.504 0.667 0.582 0.387 0.656 0.596 0.703 0.868 - 10.45 51.08 1991 0.845 0.781 0.676 0.460 0.434 0.340 0.211 0.552 0.217 0.245 0.373 0.533 - 10.45 51.08 1992 0.797 0.762 0.758 0.679 0.404 0.406 0.593 0.349 0.548 0.528 0.767 0.932 - 10.45 51.08 1993 0.925 0.924 0.796 0.546 0.373 0.685 0.652 0.506 0.584 0.661 0.818 0.898 - 10.45 51.08 1994 0.918 0.871 0.844 0.749 0.614 0.568 0.576 0.526 0.698 0.647 0.749 0.917 - 10.45 51.08 1995 0.906 0.887 0.712 0.629 0.593 0.750 0.597 0.487 0.736 0.736 0.683 0.722 - 10.45 51.08 1996 0.807 0.815 0.721 0.583 0.720 0.550 0.654 0.671 0.695 0.693 0.872 0.911 - 10.45 51.08 1997 0.918 0.892 0.830 0.665 0.530 0.353 0.596 0.526 0.469 0.588 0.732 0.870 - 10.45 51.08 1998 0.879 0.772 0.737 0.577 0.554 0.517 0.548 0.402 0.749 0.883 0.930 0.885 - 10.45 51.08 1999 0.838 0.806 0.762 0.641 0.475 0.646 0.672 0.495 0.429 0.453 0.802 0.910 - 10.45 51.08 2000 0.901 0.907 0.867 0.665 0.459 0.394 0.514 0.513 0.702 0.726 0.676 0.674 - 10.45 51.08 2001 0.671 0.732 0.793 0.774 0.581 0.545 0.678 0.326 0.548 0.609 0.800 0.927 - 10.45 51.08 2002 0.893 0.839 0.856 0.663 0.699 0.656 0.632 0.663 0.591 0.790 0.919 0.924 - 10.45 51.08 2003 0.927 0.897 0.776 0.502 0.496 0.610 0.377 0.201 0.488 0.641 0.697 0.891 - 10.45 51.08 2004 0.893 0.875 0.703 0.569 0.765 0.467 0.586 0.359 0.387 0.479 0.679 0.898 - 10.45 51.08 2005 0.899 0.911 0.855 0.631 0.542 0.356 0.478 0.671 0.620 0.694 0.681 0.779 - 10.45 51.08 2006 0.775 0.726 0.796 0.692 0.551 0.614 0.525 0.636 0.599 0.646 0.714 0.701 - 10.45 51.08 2007 0.794 0.798 0.720 0.543 0.483 0.694 0.654 0.746 0.617 0.772 0.805 0.884 - 10.45 51.08 2008 0.842 0.751 0.742 0.776 0.499 0.443 0.512 0.327 0.455 0.671 0.867 0.914 - 10.45 51.08 2009 0.856 0.804 0.806 0.616 0.685 0.565 0.559 0.410 0.532 0.734 0.912 0.939 - 10.45 51.08 2010 0.948 0.949 0.806 0.556 0.706 0.463 0.526 0.804 0.658 0.832 0.899 0.941 - 10.45 51.08 2011 0.940 0.839 0.692 0.509 0.298 0.339 0.633 0.550 0.604 0.597 0.577 0.689 - 10.45 51.08 2012 0.891 0.856 0.648 0.466 0.461 0.651 0.655 0.497 0.450 0.531 0.640 0.927 diff --git a/rLPJGUESS/inst/extdata/outputsForTests/standard/outDirectory/nflux.out b/rLPJGUESS/inst/extdata/outputsForTests/standard/outDirectory/nflux.out deleted file mode 100644 index 5d0c11b..0000000 --- a/rLPJGUESS/inst/extdata/outputsForTests/standard/outDirectory/nflux.out +++ /dev/null @@ -1,63 +0,0 @@ - Lon Lat Year dep fix fert flux leach NEE - 10.45 51.08 1951 -11.23 -2.02 -0.00 1.20 0.55 -11.51 - 10.45 51.08 1952 -11.23 -1.77 -0.00 2.74 1.02 -9.25 - 10.45 51.08 1953 -11.23 -1.99 -0.00 1.28 0.32 -11.61 - 10.45 51.08 1954 -11.23 -2.20 -0.00 1.18 0.72 -11.54 - 10.45 51.08 1955 -11.23 -2.08 -0.00 1.12 0.72 -11.48 - 10.45 51.08 1956 -11.23 -2.22 -0.00 1.09 0.74 -11.62 - 10.45 51.08 1957 -11.23 -2.22 -0.00 1.23 0.71 -11.51 - 10.45 51.08 1958 -11.23 -2.01 -0.00 1.21 0.90 -11.13 - 10.45 51.08 1959 -11.23 -2.08 -0.00 3.48 0.16 -9.67 - 10.45 51.08 1960 -14.10 -2.48 -0.00 1.14 0.74 -14.70 - 10.45 51.08 1961 -14.10 -2.31 -0.00 1.20 0.76 -14.45 - 10.45 51.08 1962 -14.10 -2.48 -0.00 1.15 0.42 -15.01 - 10.45 51.08 1963 -14.10 -1.96 -0.00 1.14 0.59 -14.34 - 10.45 51.08 1964 -14.10 -1.73 -0.00 1.25 0.36 -14.22 - 10.45 51.08 1965 -14.10 -2.44 -0.00 1.03 0.79 -14.72 - 10.45 51.08 1966 -14.10 -2.12 -0.00 1.10 0.85 -14.27 - 10.45 51.08 1967 -14.10 -2.08 -0.00 1.18 0.69 -14.30 - 10.45 51.08 1968 -14.10 -2.18 -0.00 1.14 0.61 -14.54 - 10.45 51.08 1969 -14.10 -1.93 -0.00 1.57 0.66 -13.80 - 10.45 51.08 1970 -16.97 -2.08 -0.00 1.07 0.95 -17.03 - 10.45 51.08 1971 -16.97 -1.95 -0.00 1.98 0.33 -16.61 - 10.45 51.08 1972 -16.97 -2.47 -0.00 0.95 0.45 -18.04 - 10.45 51.08 1973 -16.97 -1.73 -0.00 1.19 0.60 -16.91 - 10.45 51.08 1974 -16.97 -2.25 -0.00 1.01 0.82 -17.39 - 10.45 51.08 1975 -16.97 -1.73 -0.00 1.25 0.43 -17.02 - 10.45 51.08 1976 -16.97 -1.79 -0.00 1.68 0.37 -16.71 - 10.45 51.08 1977 -16.97 -2.20 -0.00 0.91 0.85 -17.40 - 10.45 51.08 1978 -16.97 -2.27 -0.00 0.99 0.50 -17.74 - 10.45 51.08 1979 -16.97 -1.90 -0.00 1.05 0.73 -17.09 - 10.45 51.08 1980 -17.99 -1.97 -0.00 1.02 0.62 -18.32 - 10.45 51.08 1981 -17.99 -1.91 -0.00 1.14 0.79 -17.97 - 10.45 51.08 1982 -17.99 -1.63 -0.00 2.08 0.33 -17.22 - 10.45 51.08 1983 -17.99 -1.50 -0.00 1.16 0.52 -17.81 - 10.45 51.08 1984 -17.99 -2.16 -0.00 0.95 0.87 -18.34 - 10.45 51.08 1985 -17.99 -1.88 -0.00 1.11 0.41 -18.35 - 10.45 51.08 1986 -17.99 -1.81 -0.00 1.10 0.72 -17.98 - 10.45 51.08 1987 -17.99 -2.03 -0.00 0.95 0.93 -18.14 - 10.45 51.08 1988 -17.99 -1.82 -0.00 1.19 0.74 -17.89 - 10.45 51.08 1989 -17.99 -1.83 -0.00 1.16 0.63 -18.03 - 10.45 51.08 1990 -19.66 -2.56 -0.00 1.11 0.66 -20.45 - 10.45 51.08 1991 -19.66 -2.27 -0.00 3.59 0.23 -18.11 - 10.45 51.08 1992 -19.66 -1.72 -0.00 1.56 0.66 -19.16 - 10.45 51.08 1993 -19.66 -1.85 -0.00 1.14 0.76 -19.61 - 10.45 51.08 1994 -19.66 -1.99 -0.00 1.17 0.82 -19.66 - 10.45 51.08 1995 -19.66 -2.01 -0.00 1.06 0.80 -19.81 - 10.45 51.08 1996 -19.66 -2.38 -0.00 0.94 0.75 -20.35 - 10.45 51.08 1997 -19.66 -2.09 -0.00 1.12 0.77 -19.85 - 10.45 51.08 1998 -19.66 -2.44 -0.00 1.07 0.88 -20.15 - 10.45 51.08 1999 -19.66 -2.15 -0.00 1.09 0.64 -20.07 - 10.45 51.08 2000 -21.34 -2.04 -0.00 1.11 0.78 -21.49 - 10.45 51.08 2001 -21.34 -2.20 -0.00 1.06 0.92 -21.56 - 10.45 51.08 2002 -21.34 -2.20 -0.00 0.99 1.09 -21.47 - 10.45 51.08 2003 -21.34 -1.87 -0.00 1.95 0.40 -20.87 - 10.45 51.08 2004 -21.34 -2.34 -0.00 1.03 0.51 -22.14 - 10.45 51.08 2005 -21.34 -2.26 -0.00 1.05 0.58 -21.98 - 10.45 51.08 2006 -21.34 -2.14 -0.00 1.09 0.57 -21.82 - 10.45 51.08 2007 -21.34 -2.10 -0.00 1.01 0.86 -21.58 - 10.45 51.08 2008 -21.34 -2.28 -0.00 1.15 0.69 -21.78 - 10.45 51.08 2009 -21.34 -2.05 -0.00 1.06 0.85 -21.48 - 10.45 51.08 2010 -20.03 -2.41 -0.00 1.02 0.75 -20.67 - 10.45 51.08 2011 -20.03 -2.23 -0.00 1.35 0.46 -20.45 - 10.45 51.08 2012 -20.03 -2.34 -0.00 1.08 0.57 -20.71 diff --git a/rLPJGUESS/inst/extdata/outputsForTests/standard/outDirectory/ngases.out b/rLPJGUESS/inst/extdata/outputsForTests/standard/outDirectory/ngases.out deleted file mode 100644 index 5a3ebe2..0000000 --- a/rLPJGUESS/inst/extdata/outputsForTests/standard/outDirectory/ngases.out +++ /dev/null @@ -1,63 +0,0 @@ - Lon Lat Year NH3 NO NO2 N2O N2 NSoil Total - 10.45 51.08 1951 0.113 0.145 0.036 0.017 0.168 0.719 1.198 - 10.45 51.08 1952 0.448 0.575 0.144 0.066 0.665 0.844 2.743 - 10.45 51.08 1953 0.106 0.137 0.034 0.016 0.158 0.833 1.284 - 10.45 51.08 1954 0.105 0.135 0.034 0.016 0.156 0.738 1.182 - 10.45 51.08 1955 0.104 0.133 0.033 0.015 0.154 0.677 1.117 - 10.45 51.08 1956 0.102 0.131 0.033 0.015 0.152 0.659 1.093 - 10.45 51.08 1957 0.100 0.128 0.032 0.015 0.148 0.804 1.227 - 10.45 51.08 1958 0.098 0.125 0.031 0.014 0.145 0.794 1.208 - 10.45 51.08 1959 0.604 0.776 0.195 0.090 0.896 0.918 3.479 - 10.45 51.08 1960 0.093 0.119 0.030 0.014 0.138 0.742 1.136 - 10.45 51.08 1961 0.094 0.120 0.030 0.014 0.139 0.801 1.198 - 10.45 51.08 1962 0.092 0.119 0.030 0.014 0.137 0.755 1.146 - 10.45 51.08 1963 0.091 0.117 0.029 0.014 0.135 0.752 1.137 - 10.45 51.08 1964 0.089 0.114 0.029 0.013 0.132 0.872 1.248 - 10.45 51.08 1965 0.088 0.113 0.028 0.013 0.130 0.661 1.033 - 10.45 51.08 1966 0.087 0.111 0.028 0.013 0.128 0.729 1.096 - 10.45 51.08 1967 0.085 0.109 0.027 0.013 0.125 0.824 1.182 - 10.45 51.08 1968 0.083 0.107 0.027 0.012 0.123 0.784 1.136 - 10.45 51.08 1969 0.179 0.229 0.058 0.027 0.265 0.810 1.567 - 10.45 51.08 1970 0.081 0.103 0.026 0.012 0.120 0.733 1.075 - 10.45 51.08 1971 0.257 0.330 0.083 0.038 0.381 0.892 1.980 - 10.45 51.08 1972 0.078 0.100 0.025 0.012 0.115 0.617 0.947 - 10.45 51.08 1973 0.076 0.097 0.024 0.011 0.112 0.873 1.193 - 10.45 51.08 1974 0.077 0.099 0.025 0.011 0.114 0.687 1.015 - 10.45 51.08 1975 0.090 0.115 0.029 0.013 0.133 0.869 1.250 - 10.45 51.08 1976 0.186 0.239 0.060 0.028 0.276 0.895 1.683 - 10.45 51.08 1977 0.072 0.093 0.023 0.011 0.107 0.603 0.910 - 10.45 51.08 1978 0.071 0.091 0.023 0.011 0.106 0.692 0.994 - 10.45 51.08 1979 0.070 0.090 0.022 0.010 0.104 0.757 1.053 - 10.45 51.08 1980 0.069 0.088 0.022 0.010 0.102 0.734 1.024 - 10.45 51.08 1981 0.101 0.130 0.032 0.015 0.150 0.715 1.142 - 10.45 51.08 1982 0.269 0.345 0.086 0.040 0.398 0.943 2.081 - 10.45 51.08 1983 0.095 0.122 0.031 0.014 0.141 0.758 1.162 - 10.45 51.08 1984 0.095 0.122 0.031 0.014 0.141 0.545 0.946 - 10.45 51.08 1985 0.092 0.118 0.030 0.014 0.137 0.724 1.114 - 10.45 51.08 1986 0.090 0.116 0.029 0.013 0.134 0.720 1.104 - 10.45 51.08 1987 0.090 0.115 0.029 0.013 0.133 0.572 0.952 - 10.45 51.08 1988 0.087 0.111 0.028 0.013 0.128 0.823 1.190 - 10.45 51.08 1989 0.115 0.148 0.037 0.017 0.171 0.675 1.163 - 10.45 51.08 1990 0.113 0.145 0.036 0.017 0.168 0.627 1.107 - 10.45 51.08 1991 0.636 0.817 0.205 0.094 0.943 0.892 3.587 - 10.45 51.08 1992 0.187 0.241 0.060 0.028 0.278 0.762 1.556 - 10.45 51.08 1993 0.122 0.157 0.039 0.018 0.181 0.626 1.144 - 10.45 51.08 1994 0.101 0.130 0.033 0.015 0.150 0.739 1.168 - 10.45 51.08 1995 0.099 0.127 0.032 0.015 0.147 0.641 1.060 - 10.45 51.08 1996 0.098 0.126 0.032 0.015 0.145 0.522 0.937 - 10.45 51.08 1997 0.095 0.122 0.031 0.014 0.141 0.721 1.122 - 10.45 51.08 1998 0.093 0.119 0.030 0.014 0.137 0.676 1.069 - 10.45 51.08 1999 0.090 0.116 0.029 0.013 0.134 0.710 1.092 - 10.45 51.08 2000 0.088 0.113 0.028 0.013 0.130 0.742 1.114 - 10.45 51.08 2001 0.086 0.110 0.028 0.013 0.127 0.696 1.059 - 10.45 51.08 2002 0.084 0.108 0.027 0.013 0.125 0.633 0.991 - 10.45 51.08 2003 0.256 0.329 0.083 0.038 0.380 0.863 1.948 - 10.45 51.08 2004 0.080 0.102 0.026 0.012 0.118 0.687 1.025 - 10.45 51.08 2005 0.078 0.100 0.025 0.012 0.116 0.716 1.048 - 10.45 51.08 2006 0.077 0.098 0.025 0.011 0.113 0.769 1.093 - 10.45 51.08 2007 0.078 0.101 0.025 0.012 0.116 0.676 1.007 - 10.45 51.08 2008 0.078 0.100 0.025 0.012 0.116 0.818 1.149 - 10.45 51.08 2009 0.077 0.098 0.025 0.011 0.113 0.732 1.056 - 10.45 51.08 2010 0.076 0.097 0.024 0.011 0.112 0.704 1.025 - 10.45 51.08 2011 0.130 0.167 0.042 0.019 0.193 0.799 1.349 - 10.45 51.08 2012 0.072 0.093 0.023 0.011 0.107 0.779 1.085 diff --git a/rLPJGUESS/inst/extdata/outputsForTests/standard/outDirectory/nlitter.out b/rLPJGUESS/inst/extdata/outputsForTests/standard/outDirectory/nlitter.out deleted file mode 100644 index 8ec2595..0000000 --- a/rLPJGUESS/inst/extdata/outputsForTests/standard/outDirectory/nlitter.out +++ /dev/null @@ -1,63 +0,0 @@ - Lon Lat Year Abi_alb BES Bet_pen Bet_pub Car_bet Cor_ave Fag_syl Fra_exc Jun_oxy MRS Pic_abi Pic_sit Pin_syl Pin_hal Pop_tre Que_coc Que_ile Que_pub Que_rob Til_cor Ulm_gla C3_gr C4_gr Total - 10.45 51.08 1951 0.00 0.00 0.00 5.01 0.45 0.00 50.69 2.49 0.00 0.00 0.23 0.00 0.00 0.00 0.00 0.00 0.00 0.00 6.85 0.21 0.00 0.00 0.00 65.92 - 10.45 51.08 1952 0.00 0.00 0.00 4.93 0.45 0.00 51.40 2.48 0.00 0.00 0.24 0.00 0.00 0.00 0.00 0.00 0.00 0.00 6.81 0.22 0.00 0.00 0.00 66.52 - 10.45 51.08 1953 0.00 0.00 0.00 4.88 0.44 0.00 52.19 2.43 0.00 0.00 0.25 0.00 0.00 0.00 0.00 0.00 0.00 0.00 6.69 0.21 0.00 0.00 0.00 67.10 - 10.45 51.08 1954 0.00 0.00 0.00 4.81 0.44 0.00 53.07 2.45 0.00 0.00 0.26 0.00 0.00 0.00 0.00 0.00 0.00 0.00 6.73 0.22 0.00 0.00 0.00 67.98 - 10.45 51.08 1955 0.00 0.00 0.00 4.63 0.43 0.00 53.59 2.37 0.00 0.00 0.27 0.00 0.00 0.00 0.00 0.00 0.00 0.00 6.52 0.21 0.00 0.00 0.00 68.03 - 10.45 51.08 1956 0.00 0.00 0.00 4.51 0.42 0.00 53.48 2.32 0.00 0.00 0.28 0.00 0.00 0.00 0.00 0.00 0.00 0.00 6.39 0.21 0.00 0.00 0.00 67.62 - 10.45 51.08 1957 0.00 0.00 0.00 4.39 0.41 0.00 53.59 2.28 0.00 0.00 0.29 0.00 0.00 0.00 0.00 0.00 0.00 0.00 6.27 0.21 0.00 0.00 0.00 67.45 - 10.45 51.08 1958 0.00 0.00 0.00 4.34 0.41 0.00 53.87 2.24 0.00 0.00 0.30 0.00 0.00 0.00 0.00 0.00 0.00 0.00 6.16 0.21 0.00 0.00 0.00 67.53 - 10.45 51.08 1959 0.00 0.00 0.00 4.17 0.39 0.00 53.96 2.16 0.00 0.00 0.30 0.00 0.00 0.00 0.00 0.00 0.00 0.00 5.93 0.20 0.00 0.00 0.00 67.11 - 10.45 51.08 1960 0.00 0.00 0.00 4.15 5.52 0.00 54.92 2.16 0.00 0.00 0.30 0.00 0.00 0.00 0.00 0.00 0.00 0.00 20.47 0.20 0.00 0.00 0.00 87.73 - 10.45 51.08 1961 0.00 0.00 0.00 4.05 0.00 0.00 55.71 2.09 0.00 0.00 0.31 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.71 0.20 0.00 0.00 0.00 67.08 - 10.45 51.08 1962 0.00 0.00 0.00 3.86 0.00 0.00 55.91 2.07 0.00 0.00 0.32 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.66 0.20 0.00 0.00 0.00 67.02 - 10.45 51.08 1963 0.00 0.00 0.00 3.89 0.00 0.00 56.24 2.04 0.00 0.00 0.33 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.59 0.20 0.00 0.00 0.00 67.29 - 10.45 51.08 1964 0.00 0.00 0.00 3.74 0.00 0.00 56.64 1.97 0.00 0.00 0.34 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.43 0.20 0.00 0.00 0.00 67.32 - 10.45 51.08 1965 0.00 0.00 0.00 3.55 0.00 0.00 56.56 1.92 0.00 0.00 0.34 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.31 0.19 0.00 0.00 0.00 66.87 - 10.45 51.08 1966 0.00 0.00 0.00 3.54 0.00 0.00 57.46 1.89 0.00 0.00 0.36 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.25 0.19 0.00 0.00 0.00 67.69 - 10.45 51.08 1967 0.00 0.00 0.00 3.44 0.00 0.00 57.77 1.86 0.00 0.00 0.36 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.19 0.19 0.00 0.00 0.00 67.82 - 10.45 51.08 1968 0.00 0.00 0.00 3.29 0.00 0.00 57.95 1.79 0.00 0.00 0.38 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.03 0.19 0.00 0.00 0.00 67.63 - 10.45 51.08 1969 0.00 0.00 0.00 3.19 0.00 0.00 58.01 1.76 0.00 0.00 0.39 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.95 0.18 0.00 0.00 0.00 67.49 - 10.45 51.08 1970 0.00 0.00 0.00 3.07 0.00 0.00 58.09 1.69 0.00 0.00 0.39 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.81 0.18 0.00 0.00 0.00 67.23 - 10.45 51.08 1971 0.00 0.00 0.00 2.90 0.00 0.00 57.74 1.61 0.00 0.00 0.39 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.62 0.17 0.00 0.00 0.00 66.43 - 10.45 51.08 1972 0.00 0.00 0.00 2.77 0.00 0.00 58.03 1.57 0.00 0.00 0.40 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.54 0.17 0.00 0.00 0.00 66.49 - 10.45 51.08 1973 0.00 0.00 0.00 2.69 0.00 0.00 57.85 1.52 0.00 0.00 0.43 0.00 0.00 0.00 0.00 0.00 0.00 0.00 18.76 0.17 0.00 0.00 0.00 81.42 - 10.45 51.08 1974 0.00 0.00 0.00 2.55 0.00 0.00 57.46 1.46 0.00 0.00 0.45 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.56 0.16 0.00 0.00 0.00 64.64 - 10.45 51.08 1975 0.00 0.00 0.00 2.47 0.00 0.00 57.55 1.45 0.00 0.00 0.48 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.54 0.16 0.00 0.00 0.00 64.65 - 10.45 51.08 1976 0.00 0.00 0.00 2.32 0.00 0.00 56.91 1.39 0.00 0.00 0.50 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.43 0.16 0.00 0.00 0.00 63.70 - 10.45 51.08 1977 0.00 0.00 0.00 2.19 0.00 0.00 57.01 1.31 0.00 0.00 0.51 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.30 0.15 0.00 0.00 0.00 63.48 - 10.45 51.08 1978 0.00 0.00 0.00 2.09 0.00 0.00 56.69 1.29 0.00 0.00 0.53 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.26 0.15 0.00 0.00 0.00 63.01 - 10.45 51.08 1979 0.00 0.00 0.00 2.01 0.00 0.00 56.47 1.27 0.00 0.00 0.57 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.23 0.15 0.00 0.00 0.00 62.71 - 10.45 51.08 1980 0.00 0.00 0.00 167.49 0.00 0.00 55.84 1.26 0.00 0.00 0.61 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.20 2.29 0.00 0.00 0.00 229.68 - 10.45 51.08 1981 0.00 0.00 0.00 0.00 0.00 0.00 55.31 1.22 0.00 0.00 0.66 0.00 0.00 0.00 0.00 0.00 0.00 0.00 9.98 0.00 0.00 0.00 0.00 67.17 - 10.45 51.08 1982 0.00 0.00 0.00 0.00 0.00 0.00 55.68 1.25 0.00 0.00 0.70 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.87 0.00 0.00 0.00 0.00 59.50 - 10.45 51.08 1983 0.00 0.00 0.00 0.00 0.00 0.00 55.40 1.19 0.00 0.00 0.75 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.78 0.00 0.00 0.00 0.00 59.12 - 10.45 51.08 1984 0.00 0.00 0.00 0.00 0.00 0.00 55.84 1.16 0.00 0.00 0.77 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.75 0.00 0.00 0.00 0.00 59.52 - 10.45 51.08 1985 0.00 0.00 0.00 0.00 0.00 0.00 55.02 1.14 0.00 0.00 0.81 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.70 0.00 0.00 0.00 0.00 58.67 - 10.45 51.08 1986 0.00 0.00 0.00 0.00 0.00 0.00 55.65 1.13 0.00 0.00 0.86 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.70 0.00 0.00 0.00 0.00 59.34 - 10.45 51.08 1987 0.00 0.00 0.00 0.00 0.00 0.00 55.78 1.10 0.00 0.00 0.89 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.65 0.00 0.00 0.00 0.00 59.41 - 10.45 51.08 1988 0.00 0.00 0.00 0.00 0.00 0.00 228.69 1.09 0.00 0.00 0.94 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.64 0.00 0.00 0.00 0.00 232.36 - 10.45 51.08 1989 0.00 0.00 0.00 0.00 0.00 0.00 35.72 1.09 0.00 0.00 1.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.63 0.00 0.00 0.00 0.00 39.44 - 10.45 51.08 1990 0.00 0.00 0.00 0.00 0.00 0.00 43.81 9.24 0.00 0.00 1.14 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.73 0.00 0.00 20.30 0.00 76.21 - 10.45 51.08 1991 0.00 0.00 0.00 0.00 0.00 0.00 45.70 0.96 0.00 0.00 1.34 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.92 0.00 0.00 19.03 0.00 68.94 - 10.45 51.08 1992 0.00 0.00 0.00 0.00 0.00 0.00 46.86 1.01 0.00 0.00 1.51 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.02 0.00 0.00 12.72 0.00 64.12 - 10.45 51.08 1993 0.00 0.00 0.00 0.00 0.00 0.00 47.16 1.02 0.00 0.00 1.68 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.04 0.00 0.00 8.29 0.00 60.19 - 10.45 51.08 1994 0.00 0.00 0.00 0.00 0.00 0.00 48.29 1.06 0.00 0.00 1.81 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.12 0.00 0.00 5.59 0.00 58.86 - 10.45 51.08 1995 0.00 0.00 0.00 0.00 0.00 0.00 48.77 1.06 0.00 0.00 1.94 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.13 0.00 0.00 3.03 0.00 56.92 - 10.45 51.08 1996 0.00 0.00 0.00 0.00 0.00 0.00 48.94 1.04 0.00 0.00 2.04 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.08 0.00 0.00 1.43 0.00 55.54 - 10.45 51.08 1997 0.00 0.00 0.00 0.00 0.00 0.00 49.06 1.04 0.00 0.00 2.12 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.09 0.00 0.00 0.59 0.00 54.91 - 10.45 51.08 1998 0.00 0.00 0.00 0.00 0.00 0.00 49.64 1.06 0.00 0.00 2.28 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.11 0.00 0.00 0.45 0.00 55.54 - 10.45 51.08 1999 0.00 0.00 0.00 0.00 0.00 0.00 50.34 1.08 0.00 0.00 2.41 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.15 0.00 0.00 0.23 0.00 56.21 - 10.45 51.08 2000 0.00 0.00 0.00 0.00 0.00 0.00 51.23 1.09 0.00 0.00 2.53 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.19 0.00 0.00 0.14 0.00 57.18 - 10.45 51.08 2001 0.00 0.00 0.00 0.00 0.00 0.00 51.65 1.09 0.00 0.00 2.70 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.18 0.00 0.00 0.05 0.00 57.67 - 10.45 51.08 2002 0.00 0.00 0.00 0.00 0.00 0.00 52.14 1.08 0.00 0.00 2.77 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.17 0.00 0.00 0.02 0.00 58.19 - 10.45 51.08 2003 0.00 0.00 0.00 0.00 0.00 0.00 52.08 1.08 0.00 0.00 2.84 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.15 0.00 0.00 0.01 0.00 58.16 - 10.45 51.08 2004 0.00 0.00 0.00 0.00 0.00 0.00 52.45 1.04 0.00 0.00 2.93 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.09 0.00 0.00 0.00 0.00 58.52 - 10.45 51.08 2005 0.00 0.00 0.00 0.00 0.00 0.00 53.80 1.08 0.00 0.00 3.06 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.16 0.00 0.00 0.00 0.00 60.10 - 10.45 51.08 2006 0.00 0.00 0.00 0.00 0.00 0.00 54.89 1.08 0.00 0.00 3.21 0.00 0.00 0.00 0.00 0.00 0.00 0.00 19.78 0.00 0.00 0.00 0.00 78.96 - 10.45 51.08 2007 0.00 0.00 0.00 0.00 0.00 0.00 55.29 9.87 0.00 0.00 3.29 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.40 0.00 0.00 0.00 0.00 69.85 - 10.45 51.08 2008 0.00 0.00 0.00 0.00 0.00 0.00 55.76 0.71 0.00 0.00 3.54 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.43 0.00 0.00 0.00 0.00 61.44 - 10.45 51.08 2009 0.00 0.00 0.00 0.00 0.00 0.00 56.22 0.71 0.00 0.00 3.71 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.43 0.00 0.00 5.62 0.00 67.69 - 10.45 51.08 2010 0.00 0.00 0.00 0.00 0.00 0.00 56.67 0.72 0.00 0.00 3.83 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.43 0.00 0.00 0.00 0.00 62.64 - 10.45 51.08 2011 0.00 0.00 0.00 0.00 0.00 0.00 56.72 0.69 0.00 0.00 3.84 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.37 0.00 0.00 0.00 0.00 62.62 - 10.45 51.08 2012 0.00 0.00 0.00 0.00 0.00 0.00 57.85 0.71 0.00 0.00 4.02 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.42 0.00 0.00 0.00 0.00 64.00 diff --git a/rLPJGUESS/inst/extdata/outputsForTests/standard/outDirectory/nmass.out b/rLPJGUESS/inst/extdata/outputsForTests/standard/outDirectory/nmass.out deleted file mode 100644 index 8f1db7b..0000000 --- a/rLPJGUESS/inst/extdata/outputsForTests/standard/outDirectory/nmass.out +++ /dev/null @@ -1,63 +0,0 @@ - Lon Lat Year Abi_alb BES Bet_pen Bet_pub Car_bet Cor_ave Fag_syl Fra_exc Jun_oxy MRS Pic_abi Pic_sit Pin_syl Pin_hal Pop_tre Que_coc Que_ile Que_pub Que_rob Til_cor Ulm_gla C3_gr C4_gr Total - 10.45 51.08 1951 0.00 0.00 0.00 149.12 5.29 0.00 409.44 29.88 0.00 0.00 0.65 0.00 0.00 0.00 0.00 0.00 0.00 0.00 82.16 2.01 0.00 0.00 0.00 678.56 - 10.45 51.08 1952 0.00 0.00 0.00 150.32 5.33 0.00 419.72 30.10 0.00 0.00 0.71 0.00 0.00 0.00 0.00 0.00 0.00 0.00 82.80 2.03 0.00 0.00 0.00 691.01 - 10.45 51.08 1953 0.00 0.00 0.00 151.56 5.36 0.00 430.43 30.25 0.00 0.00 0.71 0.00 0.00 0.00 0.00 0.00 0.00 0.00 83.19 2.05 0.00 0.00 0.00 703.54 - 10.45 51.08 1954 0.00 0.00 0.00 152.75 5.41 0.00 442.60 30.53 0.00 0.00 0.75 0.00 0.00 0.00 0.00 0.00 0.00 0.00 83.98 2.07 0.00 0.00 0.00 718.09 - 10.45 51.08 1955 0.00 0.00 0.00 153.45 5.42 0.00 450.79 30.60 0.00 0.00 0.80 0.00 0.00 0.00 0.00 0.00 0.00 0.00 84.16 2.08 0.00 0.00 0.00 727.28 - 10.45 51.08 1956 0.00 0.00 0.00 154.36 5.44 0.00 458.13 30.72 0.00 0.00 0.81 0.00 0.00 0.00 0.00 0.00 0.00 0.00 84.49 2.09 0.00 0.00 0.00 736.04 - 10.45 51.08 1957 0.00 0.00 0.00 155.19 5.46 0.00 466.61 30.86 0.00 0.00 0.85 0.00 0.00 0.00 0.00 0.00 0.00 0.00 84.87 2.10 0.00 0.00 0.00 745.94 - 10.45 51.08 1958 0.00 0.00 0.00 156.30 5.48 0.00 476.10 30.99 0.00 0.00 0.88 0.00 0.00 0.00 0.00 0.00 0.00 0.00 85.24 2.11 0.00 0.00 0.00 757.10 - 10.45 51.08 1959 0.00 0.00 0.00 156.92 5.49 0.00 484.57 31.03 0.00 0.00 0.87 0.00 0.00 0.00 0.00 0.00 0.00 0.00 85.33 2.11 0.00 0.00 0.00 766.33 - 10.45 51.08 1960 0.00 0.00 0.00 158.08 5.52 0.00 498.82 31.24 0.00 0.00 0.90 0.00 0.00 0.00 0.00 0.00 0.00 0.00 85.91 2.13 0.00 0.00 0.00 782.61 - 10.45 51.08 1961 0.00 0.00 0.00 158.91 0.00 0.00 508.22 31.31 0.00 0.00 0.94 0.00 0.00 0.00 0.00 0.00 0.00 0.00 70.44 2.14 0.00 0.00 0.00 771.95 - 10.45 51.08 1962 0.00 0.00 0.00 159.57 0.00 0.00 517.93 31.47 0.00 0.00 0.97 0.00 0.00 0.00 0.00 0.00 0.00 0.00 70.81 2.15 0.00 0.00 0.00 782.89 - 10.45 51.08 1963 0.00 0.00 0.00 160.65 0.00 0.00 527.92 31.61 0.00 0.00 1.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 71.13 2.17 0.00 0.00 0.00 794.47 - 10.45 51.08 1964 0.00 0.00 0.00 161.22 0.00 0.00 538.45 31.64 0.00 0.00 1.02 0.00 0.00 0.00 0.00 0.00 0.00 0.00 71.20 2.17 0.00 0.00 0.00 805.70 - 10.45 51.08 1965 0.00 0.00 0.00 161.73 0.00 0.00 548.52 31.71 0.00 0.00 1.03 0.00 0.00 0.00 0.00 0.00 0.00 0.00 71.36 2.18 0.00 0.00 0.00 816.52 - 10.45 51.08 1966 0.00 0.00 0.00 162.61 0.00 0.00 558.87 31.85 0.00 0.00 1.08 0.00 0.00 0.00 0.00 0.00 0.00 0.00 71.66 2.20 0.00 0.00 0.00 828.26 - 10.45 51.08 1967 0.00 0.00 0.00 163.23 0.00 0.00 570.15 31.98 0.00 0.00 1.11 0.00 0.00 0.00 0.00 0.00 0.00 0.00 71.96 2.21 0.00 0.00 0.00 840.64 - 10.45 51.08 1968 0.00 0.00 0.00 163.66 0.00 0.00 578.78 31.98 0.00 0.00 1.17 0.00 0.00 0.00 0.00 0.00 0.00 0.00 71.97 2.21 0.00 0.00 0.00 849.78 - 10.45 51.08 1969 0.00 0.00 0.00 164.27 0.00 0.00 588.18 32.09 0.00 0.00 1.20 0.00 0.00 0.00 0.00 0.00 0.00 0.00 72.20 2.22 0.00 0.00 0.00 860.17 - 10.45 51.08 1970 0.00 0.00 0.00 164.70 0.00 0.00 597.29 32.11 0.00 0.00 1.20 0.00 0.00 0.00 0.00 0.00 0.00 0.00 72.25 2.23 0.00 0.00 0.00 869.78 - 10.45 51.08 1971 0.00 0.00 0.00 164.94 0.00 0.00 604.86 32.08 0.00 0.00 1.20 0.00 0.00 0.00 0.00 0.00 0.00 0.00 72.17 2.23 0.00 0.00 0.00 877.48 - 10.45 51.08 1972 0.00 0.00 0.00 165.34 0.00 0.00 614.91 32.15 0.00 0.00 1.26 0.00 0.00 0.00 0.00 0.00 0.00 0.00 72.34 2.23 0.00 0.00 0.00 888.22 - 10.45 51.08 1973 0.00 0.00 0.00 165.80 0.00 0.00 623.17 32.19 0.00 0.00 1.33 0.00 0.00 0.00 0.00 0.00 0.00 0.00 72.43 2.24 0.00 0.00 0.00 897.17 - 10.45 51.08 1974 0.00 0.00 0.00 166.00 0.00 0.00 630.45 32.20 0.00 0.00 1.40 0.00 0.00 0.00 0.00 0.00 0.00 0.00 56.35 2.24 0.00 0.00 0.00 888.63 - 10.45 51.08 1975 0.00 0.00 0.00 166.45 0.00 0.00 639.94 32.32 0.00 0.00 1.49 0.00 0.00 0.00 0.00 0.00 0.00 0.00 56.57 2.26 0.00 0.00 0.00 899.03 - 10.45 51.08 1976 0.00 0.00 0.00 166.57 0.00 0.00 646.26 32.31 0.00 0.00 1.56 0.00 0.00 0.00 0.00 0.00 0.00 0.00 56.54 2.26 0.00 0.00 0.00 905.50 - 10.45 51.08 1977 0.00 0.00 0.00 166.71 0.00 0.00 655.24 32.27 0.00 0.00 1.59 0.00 0.00 0.00 0.00 0.00 0.00 0.00 56.47 2.26 0.00 0.00 0.00 914.52 - 10.45 51.08 1978 0.00 0.00 0.00 166.97 0.00 0.00 663.10 32.35 0.00 0.00 1.66 0.00 0.00 0.00 0.00 0.00 0.00 0.00 56.62 2.27 0.00 0.00 0.00 922.96 - 10.45 51.08 1979 0.00 0.00 0.00 167.29 0.00 0.00 671.08 32.44 0.00 0.00 1.77 0.00 0.00 0.00 0.00 0.00 0.00 0.00 56.78 2.28 0.00 0.00 0.00 931.65 - 10.45 51.08 1980 0.00 0.00 0.00 167.49 0.00 0.00 677.29 32.53 0.00 0.00 1.89 0.00 0.00 0.00 0.00 0.00 0.00 0.00 56.93 2.29 0.00 0.00 0.00 938.43 - 10.45 51.08 1981 0.00 0.00 0.00 0.00 0.00 0.00 683.81 32.58 0.00 0.00 2.06 0.00 0.00 0.00 0.00 0.00 0.00 0.00 57.02 0.00 0.00 0.00 0.00 775.47 - 10.45 51.08 1982 0.00 0.00 0.00 0.00 0.00 0.00 694.41 32.77 0.00 0.00 2.15 0.00 0.00 0.00 0.00 0.00 0.00 0.00 49.16 0.00 0.00 0.00 0.00 778.50 - 10.45 51.08 1983 0.00 0.00 0.00 0.00 0.00 0.00 701.62 32.75 0.00 0.00 2.31 0.00 0.00 0.00 0.00 0.00 0.00 0.00 49.13 0.00 0.00 0.00 0.00 785.81 - 10.45 51.08 1984 0.00 0.00 0.00 0.00 0.00 0.00 712.32 32.81 0.00 0.00 2.39 0.00 0.00 0.00 0.00 0.00 0.00 0.00 49.22 0.00 0.00 0.00 0.00 796.74 - 10.45 51.08 1985 0.00 0.00 0.00 0.00 0.00 0.00 717.82 32.86 0.00 0.00 2.53 0.00 0.00 0.00 0.00 0.00 0.00 0.00 49.30 0.00 0.00 0.00 0.00 802.52 - 10.45 51.08 1986 0.00 0.00 0.00 0.00 0.00 0.00 729.30 32.97 0.00 0.00 2.67 0.00 0.00 0.00 0.00 0.00 0.00 0.00 49.47 0.00 0.00 0.00 0.00 814.41 - 10.45 51.08 1987 0.00 0.00 0.00 0.00 0.00 0.00 738.71 33.01 0.00 0.00 2.78 0.00 0.00 0.00 0.00 0.00 0.00 0.00 49.51 0.00 0.00 0.00 0.00 824.01 - 10.45 51.08 1988 0.00 0.00 0.00 0.00 0.00 0.00 747.67 33.11 0.00 0.00 2.93 0.00 0.00 0.00 0.00 0.00 0.00 0.00 49.67 0.00 0.00 0.00 0.00 833.39 - 10.45 51.08 1989 0.00 0.00 0.00 0.00 0.00 0.00 568.52 33.22 0.00 0.00 3.13 0.00 0.00 0.00 0.00 0.00 0.00 0.00 49.83 0.00 0.00 0.00 0.00 654.69 - 10.45 51.08 1990 0.00 0.00 0.00 0.00 0.00 0.00 589.24 33.50 0.00 0.00 3.56 0.00 0.00 0.00 0.00 0.00 0.00 0.00 50.25 0.00 0.00 30.75 0.00 707.29 - 10.45 51.08 1991 0.00 0.00 0.00 0.00 0.00 0.00 605.08 25.46 0.00 0.00 4.17 0.00 0.00 0.00 0.00 0.00 0.00 0.00 50.93 0.00 0.00 29.11 0.00 714.75 - 10.45 51.08 1992 0.00 0.00 0.00 0.00 0.00 0.00 617.07 25.70 0.00 0.00 4.67 0.00 0.00 0.00 0.00 0.00 0.00 0.00 51.40 0.00 0.00 21.32 0.00 720.16 - 10.45 51.08 1993 0.00 0.00 0.00 0.00 0.00 0.00 625.85 25.83 0.00 0.00 5.21 0.00 0.00 0.00 0.00 0.00 0.00 0.00 51.66 0.00 0.00 15.84 0.00 724.40 - 10.45 51.08 1994 0.00 0.00 0.00 0.00 0.00 0.00 638.46 26.04 0.00 0.00 5.60 0.00 0.00 0.00 0.00 0.00 0.00 0.00 52.08 0.00 0.00 12.51 0.00 734.69 - 10.45 51.08 1995 0.00 0.00 0.00 0.00 0.00 0.00 648.19 26.17 0.00 0.00 6.02 0.00 0.00 0.00 0.00 0.00 0.00 0.00 52.33 0.00 0.00 9.35 0.00 742.06 - 10.45 51.08 1996 0.00 0.00 0.00 0.00 0.00 0.00 656.73 26.23 0.00 0.00 6.35 0.00 0.00 0.00 0.00 0.00 0.00 0.00 52.46 0.00 0.00 7.39 0.00 749.15 - 10.45 51.08 1997 0.00 0.00 0.00 0.00 0.00 0.00 665.28 26.34 0.00 0.00 6.65 0.00 0.00 0.00 0.00 0.00 0.00 0.00 52.69 0.00 0.00 6.34 0.00 757.31 - 10.45 51.08 1998 0.00 0.00 0.00 0.00 0.00 0.00 675.80 26.49 0.00 0.00 7.22 0.00 0.00 0.00 0.00 0.00 0.00 0.00 52.98 0.00 0.00 6.17 0.00 768.65 - 10.45 51.08 1999 0.00 0.00 0.00 0.00 0.00 0.00 686.87 26.65 0.00 0.00 7.64 0.00 0.00 0.00 0.00 0.00 0.00 0.00 53.31 0.00 0.00 5.90 0.00 780.37 - 10.45 51.08 2000 0.00 0.00 0.00 0.00 0.00 0.00 698.87 26.82 0.00 0.00 8.10 0.00 0.00 0.00 0.00 0.00 0.00 0.00 53.64 0.00 0.00 5.79 0.00 793.21 - 10.45 51.08 2001 0.00 0.00 0.00 0.00 0.00 0.00 708.78 26.93 0.00 0.00 8.67 0.00 0.00 0.00 0.00 0.00 0.00 0.00 53.86 0.00 0.00 5.68 0.00 803.92 - 10.45 51.08 2002 0.00 0.00 0.00 0.00 0.00 0.00 719.36 27.03 0.00 0.00 8.94 0.00 0.00 0.00 0.00 0.00 0.00 0.00 54.07 0.00 0.00 5.64 0.00 815.04 - 10.45 51.08 2003 0.00 0.00 0.00 0.00 0.00 0.00 727.62 27.13 0.00 0.00 9.24 0.00 0.00 0.00 0.00 0.00 0.00 0.00 54.26 0.00 0.00 5.63 0.00 823.88 - 10.45 51.08 2004 0.00 0.00 0.00 0.00 0.00 0.00 737.28 27.16 0.00 0.00 9.61 0.00 0.00 0.00 0.00 0.00 0.00 0.00 54.32 0.00 0.00 5.62 0.00 833.99 - 10.45 51.08 2005 0.00 0.00 0.00 0.00 0.00 0.00 752.16 27.37 0.00 0.00 10.15 0.00 0.00 0.00 0.00 0.00 0.00 0.00 54.75 0.00 0.00 5.62 0.00 850.05 - 10.45 51.08 2006 0.00 0.00 0.00 0.00 0.00 0.00 765.21 27.50 0.00 0.00 10.68 0.00 0.00 0.00 0.00 0.00 0.00 0.00 55.00 0.00 0.00 5.62 0.00 864.01 - 10.45 51.08 2007 0.00 0.00 0.00 0.00 0.00 0.00 775.49 27.52 0.00 0.00 11.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 36.69 0.00 0.00 5.62 0.00 856.31 - 10.45 51.08 2008 0.00 0.00 0.00 0.00 0.00 0.00 786.89 18.46 0.00 0.00 12.01 0.00 0.00 0.00 0.00 0.00 0.00 0.00 36.93 0.00 0.00 5.62 0.00 859.91 - 10.45 51.08 2009 0.00 0.00 0.00 0.00 0.00 0.00 797.78 18.54 0.00 0.00 12.57 0.00 0.00 0.00 0.00 0.00 0.00 0.00 37.09 0.00 0.00 5.62 0.00 871.59 - 10.45 51.08 2010 0.00 0.00 0.00 0.00 0.00 0.00 808.75 18.62 0.00 0.00 13.07 0.00 0.00 0.00 0.00 0.00 0.00 0.00 37.25 0.00 0.00 0.00 0.00 877.69 - 10.45 51.08 2011 0.00 0.00 0.00 0.00 0.00 0.00 817.62 18.63 0.00 0.00 13.19 0.00 0.00 0.00 0.00 0.00 0.00 0.00 37.26 0.00 0.00 0.00 0.00 886.69 - 10.45 51.08 2012 0.00 0.00 0.00 0.00 0.00 0.00 832.30 18.77 0.00 0.00 14.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 37.54 0.00 0.00 0.00 0.00 902.61 diff --git a/rLPJGUESS/inst/extdata/outputsForTests/standard/outDirectory/npool.out b/rLPJGUESS/inst/extdata/outputsForTests/standard/outDirectory/npool.out deleted file mode 100644 index 6ba24b1..0000000 --- a/rLPJGUESS/inst/extdata/outputsForTests/standard/outDirectory/npool.out +++ /dev/null @@ -1,63 +0,0 @@ - Lon Lat Year VegN LitterN SoilN Total - 10.45 51.08 1951 0.0679 0.0504 1.1198 1.2380 - 10.45 51.08 1952 0.0691 0.0488 1.1193 1.2373 - 10.45 51.08 1953 0.0704 0.0470 1.1195 1.2368 - 10.45 51.08 1954 0.0718 0.0463 1.1195 1.2376 - 10.45 51.08 1955 0.0727 0.0458 1.1200 1.2386 - 10.45 51.08 1956 0.0736 0.0454 1.1207 1.2397 - 10.45 51.08 1957 0.0746 0.0441 1.1206 1.2393 - 10.45 51.08 1958 0.0757 0.0431 1.1204 1.2392 - 10.45 51.08 1959 0.0766 0.0412 1.1197 1.2375 - 10.45 51.08 1960 0.0783 0.0407 1.1195 1.2385 - 10.45 51.08 1961 0.0772 0.0413 1.1196 1.2381 - 10.45 51.08 1962 0.0783 0.0407 1.1194 1.2384 - 10.45 51.08 1963 0.0794 0.0401 1.1191 1.2387 - 10.45 51.08 1964 0.0806 0.0389 1.1183 1.2378 - 10.45 51.08 1965 0.0817 0.0387 1.1186 1.2390 - 10.45 51.08 1966 0.0828 0.0380 1.1187 1.2395 - 10.45 51.08 1967 0.0841 0.0370 1.1182 1.2393 - 10.45 51.08 1968 0.0850 0.0363 1.1179 1.2392 - 10.45 51.08 1969 0.0860 0.0356 1.1172 1.2389 - 10.45 51.08 1970 0.0870 0.0352 1.1170 1.2392 - 10.45 51.08 1971 0.0877 0.0338 1.1160 1.2376 - 10.45 51.08 1972 0.0888 0.0339 1.1164 1.2391 - 10.45 51.08 1973 0.0897 0.0329 1.1154 1.2379 - 10.45 51.08 1974 0.0889 0.0339 1.1156 1.2383 - 10.45 51.08 1975 0.0899 0.0327 1.1145 1.2371 - 10.45 51.08 1976 0.0906 0.0315 1.1132 1.2353 - 10.45 51.08 1977 0.0915 0.0315 1.1135 1.2364 - 10.45 51.08 1978 0.0923 0.0311 1.1133 1.2367 - 10.45 51.08 1979 0.0932 0.0304 1.1127 1.2363 - 10.45 51.08 1980 0.0938 0.0299 1.1122 1.2359 - 10.45 51.08 1981 0.0775 0.0453 1.1126 1.2354 - 10.45 51.08 1982 0.0778 0.0437 1.1113 1.2328 - 10.45 51.08 1983 0.0786 0.0424 1.1109 1.2319 - 10.45 51.08 1984 0.0797 0.0423 1.1115 1.2335 - 10.45 51.08 1985 0.0803 0.0410 1.1114 1.2327 - 10.45 51.08 1986 0.0814 0.0402 1.1109 1.2325 - 10.45 51.08 1987 0.0824 0.0400 1.1113 1.2337 - 10.45 51.08 1988 0.0833 0.0384 1.1106 1.2323 - 10.45 51.08 1989 0.0655 0.0530 1.1126 1.2311 - 10.45 51.08 1990 0.0707 0.0509 1.1124 1.2340 - 10.45 51.08 1991 0.0715 0.0496 1.1121 1.2332 - 10.45 51.08 1992 0.0720 0.0481 1.1131 1.2332 - 10.45 51.08 1993 0.0724 0.0472 1.1142 1.2338 - 10.45 51.08 1994 0.0735 0.0456 1.1144 1.2335 - 10.45 51.08 1995 0.0742 0.0446 1.1150 1.2338 - 10.45 51.08 1996 0.0749 0.0443 1.1158 1.2350 - 10.45 51.08 1997 0.0757 0.0426 1.1157 1.2341 - 10.45 51.08 1998 0.0769 0.0415 1.1156 1.2340 - 10.45 51.08 1999 0.0780 0.0402 1.1154 1.2336 - 10.45 51.08 2000 0.0793 0.0389 1.1149 1.2331 - 10.45 51.08 2001 0.0804 0.0380 1.1146 1.2330 - 10.45 51.08 2002 0.0815 0.0374 1.1146 1.2335 - 10.45 51.08 2003 0.0824 0.0358 1.1134 1.2316 - 10.45 51.08 2004 0.0834 0.0350 1.1131 1.2315 - 10.45 51.08 2005 0.0850 0.0343 1.1126 1.2319 - 10.45 51.08 2006 0.0864 0.0334 1.1118 1.2316 - 10.45 51.08 2007 0.0856 0.0345 1.1119 1.2320 - 10.45 51.08 2008 0.0860 0.0342 1.1110 1.2313 - 10.45 51.08 2009 0.0872 0.0335 1.1106 1.2313 - 10.45 51.08 2010 0.0878 0.0333 1.1107 1.2318 - 10.45 51.08 2011 0.0887 0.0321 1.1101 1.2308 - 10.45 51.08 2012 0.0903 0.0313 1.1094 1.2310 diff --git a/rLPJGUESS/inst/extdata/outputsForTests/standard/outDirectory/nsources.out b/rLPJGUESS/inst/extdata/outputsForTests/standard/outDirectory/nsources.out deleted file mode 100644 index 76cafe2..0000000 --- a/rLPJGUESS/inst/extdata/outputsForTests/standard/outDirectory/nsources.out +++ /dev/null @@ -1,63 +0,0 @@ - Lon Lat Year dep fix fert input min imm netmin Total - 10.45 51.08 1951 11.23 2.02 0.00 13.25 116.60 45.24 71.37 84.62 - 10.45 51.08 1952 11.23 1.77 0.00 13.01 123.52 39.56 83.96 96.97 - 10.45 51.08 1953 11.23 1.99 0.00 13.22 134.39 51.61 82.78 96.00 - 10.45 51.08 1954 11.23 2.20 0.00 13.43 111.56 38.30 73.26 86.70 - 10.45 51.08 1955 11.23 2.08 0.00 13.31 102.69 35.32 67.37 80.68 - 10.45 51.08 1956 11.23 2.22 0.00 13.45 100.51 34.82 65.68 79.14 - 10.45 51.08 1957 11.23 2.22 0.00 13.45 120.85 40.52 80.33 93.78 - 10.45 51.08 1958 11.23 2.01 0.00 13.25 116.87 37.57 79.30 92.54 - 10.45 51.08 1959 11.23 2.08 0.00 13.31 138.83 47.21 91.63 104.93 - 10.45 51.08 1960 14.10 2.48 0.00 16.58 109.83 35.89 73.94 90.52 - 10.45 51.08 1961 14.10 2.31 0.00 16.41 127.02 47.34 79.69 96.09 - 10.45 51.08 1962 14.10 2.48 0.00 16.58 110.97 35.66 75.32 91.89 - 10.45 51.08 1963 14.10 1.96 0.00 16.06 108.13 33.15 74.99 91.05 - 10.45 51.08 1964 14.10 1.73 0.00 15.83 122.62 35.58 87.04 102.87 - 10.45 51.08 1965 14.10 2.44 0.00 16.54 98.87 33.05 65.82 82.36 - 10.45 51.08 1966 14.10 2.12 0.00 16.22 108.95 36.20 72.75 88.97 - 10.45 51.08 1967 14.10 2.08 0.00 16.18 120.61 38.32 82.29 98.47 - 10.45 51.08 1968 14.10 2.18 0.00 16.28 113.76 35.51 78.25 94.53 - 10.45 51.08 1969 14.10 1.93 0.00 16.03 112.42 31.54 80.88 96.91 - 10.45 51.08 1970 16.97 2.08 0.00 19.05 103.57 30.36 73.21 92.26 - 10.45 51.08 1971 16.97 1.95 0.00 18.92 128.48 39.40 89.08 108.00 - 10.45 51.08 1972 16.97 2.47 0.00 19.44 94.13 32.54 61.59 81.03 - 10.45 51.08 1973 16.97 1.73 0.00 18.70 121.96 34.74 87.21 105.91 - 10.45 51.08 1974 16.97 2.25 0.00 19.22 106.62 37.98 68.64 87.86 - 10.45 51.08 1975 16.97 1.73 0.00 18.70 126.92 40.03 86.88 105.58 - 10.45 51.08 1976 16.97 1.79 0.00 18.76 129.88 40.42 89.46 108.22 - 10.45 51.08 1977 16.97 2.20 0.00 19.17 94.54 34.35 60.20 79.37 - 10.45 51.08 1978 16.97 2.27 0.00 19.24 104.01 34.84 69.17 88.40 - 10.45 51.08 1979 16.97 1.90 0.00 18.87 107.92 32.25 75.67 94.54 - 10.45 51.08 1980 17.99 1.97 0.00 19.97 108.32 34.95 73.37 93.34 - 10.45 51.08 1981 17.99 1.91 0.00 19.91 108.27 36.80 71.47 91.38 - 10.45 51.08 1982 17.99 1.63 0.00 19.63 144.14 49.86 94.28 113.91 - 10.45 51.08 1983 17.99 1.50 0.00 19.49 121.63 46.06 75.57 95.06 - 10.45 51.08 1984 17.99 2.16 0.00 20.16 89.26 35.03 54.22 74.38 - 10.45 51.08 1985 17.99 1.88 0.00 19.87 114.20 41.92 72.28 92.15 - 10.45 51.08 1986 17.99 1.81 0.00 19.80 106.96 34.99 71.97 91.77 - 10.45 51.08 1987 17.99 2.03 0.00 20.02 89.27 32.21 57.06 77.08 - 10.45 51.08 1988 17.99 1.82 0.00 19.82 127.76 45.49 82.27 102.09 - 10.45 51.08 1989 17.99 1.83 0.00 19.83 133.31 67.76 65.55 85.37 - 10.45 51.08 1990 19.66 2.56 0.00 22.22 114.61 52.36 62.25 84.47 - 10.45 51.08 1991 19.66 2.27 0.00 21.93 136.80 47.58 89.23 111.16 - 10.45 51.08 1992 19.66 1.72 0.00 21.37 128.27 54.24 74.02 95.40 - 10.45 51.08 1993 19.66 1.85 0.00 21.51 107.86 46.24 61.62 83.13 - 10.45 51.08 1994 19.66 1.99 0.00 21.65 123.32 50.28 73.04 94.68 - 10.45 51.08 1995 19.66 2.01 0.00 21.67 110.43 47.20 63.24 84.90 - 10.45 51.08 1996 19.66 2.38 0.00 22.04 89.14 37.26 51.88 73.92 - 10.45 51.08 1997 19.66 2.09 0.00 21.75 120.65 48.91 71.74 93.49 - 10.45 51.08 1998 19.66 2.44 0.00 22.10 113.75 46.45 67.30 89.40 - 10.45 51.08 1999 19.66 2.15 0.00 21.80 120.42 49.83 70.58 92.39 - 10.45 51.08 2000 21.34 2.04 0.00 23.38 122.11 48.40 73.70 97.08 - 10.45 51.08 2001 21.34 2.20 0.00 23.54 114.24 45.29 68.95 92.49 - 10.45 51.08 2002 21.34 2.20 0.00 23.55 105.05 42.35 62.70 86.25 - 10.45 51.08 2003 21.34 1.87 0.00 23.21 133.74 47.99 85.74 108.96 - 10.45 51.08 2004 21.34 2.34 0.00 23.68 114.16 46.06 68.09 91.77 - 10.45 51.08 2005 21.34 2.26 0.00 23.60 113.18 42.13 71.05 94.66 - 10.45 51.08 2006 21.34 2.14 0.00 23.48 118.61 42.20 76.41 99.89 - 10.45 51.08 2007 21.34 2.10 0.00 23.44 111.64 45.15 66.49 89.94 - 10.45 51.08 2008 21.34 2.28 0.00 23.62 126.92 45.90 81.02 104.64 - 10.45 51.08 2009 21.34 2.05 0.00 23.39 115.40 43.02 72.38 95.76 - 10.45 51.08 2010 20.03 2.41 0.00 22.44 102.12 31.91 70.21 92.65 - 10.45 51.08 2011 20.03 2.23 0.00 22.26 125.88 46.73 79.15 101.41 - 10.45 51.08 2012 20.03 2.34 0.00 22.36 121.38 44.33 77.05 99.41 diff --git a/rLPJGUESS/inst/extdata/outputsForTests/standard/outDirectory/nuptake.out b/rLPJGUESS/inst/extdata/outputsForTests/standard/outDirectory/nuptake.out deleted file mode 100644 index 0ca3293..0000000 --- a/rLPJGUESS/inst/extdata/outputsForTests/standard/outDirectory/nuptake.out +++ /dev/null @@ -1,63 +0,0 @@ - Lon Lat Year Abi_alb BES Bet_pen Bet_pub Car_bet Cor_ave Fag_syl Fra_exc Jun_oxy MRS Pic_abi Pic_sit Pin_syl Pin_hal Pop_tre Que_coc Que_ile Que_pub Que_rob Til_cor Ulm_gla C3_gr C4_gr Total - 10.45 51.08 1951 0.00 0.00 0.00 6.37 0.49 0.00 61.16 2.74 0.00 0.00 0.25 0.00 0.00 0.00 0.00 0.00 0.00 0.00 7.53 0.23 0.00 0.00 0.00 78.77 - 10.45 51.08 1952 0.00 0.00 0.00 6.21 0.49 0.00 61.10 2.72 0.00 0.00 0.28 0.00 0.00 0.00 0.00 0.00 0.00 0.00 7.49 0.23 0.00 0.00 0.00 78.53 - 10.45 51.08 1953 0.00 0.00 0.00 6.17 0.47 0.00 62.14 2.62 0.00 0.00 0.25 0.00 0.00 0.00 0.00 0.00 0.00 0.00 7.21 0.23 0.00 0.00 0.00 79.08 - 10.45 51.08 1954 0.00 0.00 0.00 6.07 0.49 0.00 64.40 2.72 0.00 0.00 0.29 0.00 0.00 0.00 0.00 0.00 0.00 0.00 7.48 0.24 0.00 0.00 0.00 81.69 - 10.45 51.08 1955 0.00 0.00 0.00 5.51 0.45 0.00 61.29 2.51 0.00 0.00 0.30 0.00 0.00 0.00 0.00 0.00 0.00 0.00 6.91 0.22 0.00 0.00 0.00 77.20 - 10.45 51.08 1956 0.00 0.00 0.00 5.55 0.45 0.00 60.96 2.50 0.00 0.00 0.29 0.00 0.00 0.00 0.00 0.00 0.00 0.00 6.86 0.22 0.00 0.00 0.00 76.83 - 10.45 51.08 1957 0.00 0.00 0.00 5.35 0.45 0.00 62.00 2.46 0.00 0.00 0.32 0.00 0.00 0.00 0.00 0.00 0.00 0.00 6.76 0.22 0.00 0.00 0.00 77.55 - 10.45 51.08 1958 0.00 0.00 0.00 5.50 0.44 0.00 63.11 2.42 0.00 0.00 0.32 0.00 0.00 0.00 0.00 0.00 0.00 0.00 6.64 0.22 0.00 0.00 0.00 78.65 - 10.45 51.08 1959 0.00 0.00 0.00 4.98 0.41 0.00 62.54 2.28 0.00 0.00 0.30 0.00 0.00 0.00 0.00 0.00 0.00 0.00 6.27 0.21 0.00 0.00 0.00 76.99 - 10.45 51.08 1960 0.00 0.00 0.00 5.33 0.00 0.00 68.24 2.37 0.00 0.00 0.33 0.00 0.00 0.00 0.00 0.00 0.00 0.00 6.52 0.22 0.00 0.00 0.00 83.00 - 10.45 51.08 1961 0.00 0.00 0.00 4.98 0.00 0.00 64.36 2.22 0.00 0.00 0.34 0.00 0.00 0.00 0.00 0.00 0.00 0.00 5.00 0.21 0.00 0.00 0.00 77.12 - 10.45 51.08 1962 0.00 0.00 0.00 4.71 0.00 0.00 65.45 2.26 0.00 0.00 0.34 0.00 0.00 0.00 0.00 0.00 0.00 0.00 5.08 0.22 0.00 0.00 0.00 78.05 - 10.45 51.08 1963 0.00 0.00 0.00 4.95 0.00 0.00 65.94 2.21 0.00 0.00 0.36 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.98 0.21 0.00 0.00 0.00 78.64 - 10.45 51.08 1964 0.00 0.00 0.00 4.46 0.00 0.00 66.80 2.07 0.00 0.00 0.35 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.66 0.20 0.00 0.00 0.00 78.55 - 10.45 51.08 1965 0.00 0.00 0.00 4.25 0.00 0.00 66.75 2.04 0.00 0.00 0.35 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.59 0.20 0.00 0.00 0.00 78.19 - 10.45 51.08 1966 0.00 0.00 0.00 4.43 0.00 0.00 66.94 2.05 0.00 0.00 0.40 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.62 0.21 0.00 0.00 0.00 78.64 - 10.45 51.08 1967 0.00 0.00 0.00 4.17 0.00 0.00 68.77 2.02 0.00 0.00 0.38 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.55 0.21 0.00 0.00 0.00 80.11 - 10.45 51.08 1968 0.00 0.00 0.00 3.87 0.00 0.00 66.43 1.87 0.00 0.00 0.43 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.21 0.19 0.00 0.00 0.00 77.00 - 10.45 51.08 1969 0.00 0.00 0.00 3.90 0.00 0.00 67.43 1.89 0.00 0.00 0.41 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.26 0.20 0.00 0.00 0.00 78.10 - 10.45 51.08 1970 0.00 0.00 0.00 3.63 0.00 0.00 67.15 1.78 0.00 0.00 0.39 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.00 0.19 0.00 0.00 0.00 77.14 - 10.45 51.08 1971 0.00 0.00 0.00 3.31 0.00 0.00 65.77 1.66 0.00 0.00 0.39 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.74 0.18 0.00 0.00 0.00 75.05 - 10.45 51.08 1972 0.00 0.00 0.00 3.30 0.00 0.00 67.81 1.68 0.00 0.00 0.44 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.78 0.18 0.00 0.00 0.00 77.20 - 10.45 51.08 1973 0.00 0.00 0.00 3.23 0.00 0.00 66.34 1.61 0.00 0.00 0.48 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.63 0.18 0.00 0.00 0.00 75.47 - 10.45 51.08 1974 0.00 0.00 0.00 2.89 0.00 0.00 65.16 1.53 0.00 0.00 0.49 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.68 0.17 0.00 0.00 0.00 72.93 - 10.45 51.08 1975 0.00 0.00 0.00 3.00 0.00 0.00 66.99 1.59 0.00 0.00 0.55 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.78 0.18 0.00 0.00 0.00 75.08 - 10.45 51.08 1976 0.00 0.00 0.00 2.59 0.00 0.00 63.95 1.44 0.00 0.00 0.55 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.52 0.17 0.00 0.00 0.00 71.22 - 10.45 51.08 1977 0.00 0.00 0.00 2.46 0.00 0.00 65.92 1.34 0.00 0.00 0.53 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.35 0.16 0.00 0.00 0.00 72.76 - 10.45 51.08 1978 0.00 0.00 0.00 2.45 0.00 0.00 64.90 1.40 0.00 0.00 0.58 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.45 0.16 0.00 0.00 0.00 71.95 - 10.45 51.08 1979 0.00 0.00 0.00 2.41 0.00 0.00 64.71 1.38 0.00 0.00 0.65 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.42 0.16 0.00 0.00 0.00 71.73 - 10.45 51.08 1980 0.00 0.00 0.00 0.00 0.00 0.00 62.71 1.36 0.00 0.00 0.69 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.38 0.00 0.00 0.00 0.00 67.15 - 10.45 51.08 1981 0.00 0.00 0.00 0.00 0.00 0.00 62.39 1.30 0.00 0.00 0.78 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.28 0.00 0.00 0.00 0.00 66.76 - 10.45 51.08 1982 0.00 0.00 0.00 0.00 0.00 0.00 66.00 1.42 0.00 0.00 0.76 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.13 0.00 0.00 0.00 0.00 70.29 - 10.45 51.08 1983 0.00 0.00 0.00 0.00 0.00 0.00 62.93 1.23 0.00 0.00 0.85 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.84 0.00 0.00 0.00 0.00 66.85 - 10.45 51.08 1984 0.00 0.00 0.00 0.00 0.00 0.00 66.13 1.25 0.00 0.00 0.83 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.88 0.00 0.00 0.00 0.00 70.08 - 10.45 51.08 1985 0.00 0.00 0.00 0.00 0.00 0.00 61.37 1.22 0.00 0.00 0.91 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.82 0.00 0.00 0.00 0.00 65.32 - 10.45 51.08 1986 0.00 0.00 0.00 0.00 0.00 0.00 66.52 1.25 0.00 0.00 0.95 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.87 0.00 0.00 0.00 0.00 70.59 - 10.45 51.08 1987 0.00 0.00 0.00 0.00 0.00 0.00 65.09 1.16 0.00 0.00 0.97 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.74 0.00 0.00 0.00 0.00 68.97 - 10.45 51.08 1988 0.00 0.00 0.00 0.00 0.00 0.00 64.77 1.20 0.00 0.00 1.04 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.81 0.00 0.00 0.00 0.00 68.83 - 10.45 51.08 1989 0.00 0.00 0.00 0.00 0.00 0.00 49.56 1.20 0.00 0.00 1.13 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.80 0.00 0.00 0.00 0.00 53.69 - 10.45 51.08 1990 0.00 0.00 0.00 0.00 0.00 0.00 56.46 1.37 0.00 0.00 1.43 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.06 0.00 0.00 30.76 0.00 92.07 - 10.45 51.08 1991 0.00 0.00 0.00 0.00 0.00 0.00 59.80 1.21 0.00 0.00 1.75 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.41 0.00 0.00 18.68 0.00 83.84 - 10.45 51.08 1992 0.00 0.00 0.00 0.00 0.00 0.00 57.74 1.19 0.00 0.00 1.84 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.38 0.00 0.00 11.24 0.00 74.40 - 10.45 51.08 1993 0.00 0.00 0.00 0.00 0.00 0.00 55.67 1.14 0.00 0.00 2.05 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.29 0.00 0.00 7.25 0.00 68.40 - 10.45 51.08 1994 0.00 0.00 0.00 0.00 0.00 0.00 59.79 1.23 0.00 0.00 2.08 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.46 0.00 0.00 4.96 0.00 70.51 - 10.45 51.08 1995 0.00 0.00 0.00 0.00 0.00 0.00 58.05 1.19 0.00 0.00 2.23 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.37 0.00 0.00 2.43 0.00 66.26 - 10.45 51.08 1996 0.00 0.00 0.00 0.00 0.00 0.00 57.34 1.12 0.00 0.00 2.28 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.25 0.00 0.00 1.06 0.00 64.04 - 10.45 51.08 1997 0.00 0.00 0.00 0.00 0.00 0.00 57.52 1.16 0.00 0.00 2.34 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.32 0.00 0.00 0.39 0.00 63.73 - 10.45 51.08 1998 0.00 0.00 0.00 0.00 0.00 0.00 59.61 1.19 0.00 0.00 2.69 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.37 0.00 0.00 0.41 0.00 66.27 - 10.45 51.08 1999 0.00 0.00 0.00 0.00 0.00 0.00 60.74 1.22 0.00 0.00 2.69 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.45 0.00 0.00 0.18 0.00 67.29 - 10.45 51.08 2000 0.00 0.00 0.00 0.00 0.00 0.00 62.37 1.24 0.00 0.00 2.87 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.48 0.00 0.00 0.12 0.00 69.08 - 10.45 51.08 2001 0.00 0.00 0.00 0.00 0.00 0.00 61.17 1.21 0.00 0.00 3.10 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.42 0.00 0.00 0.03 0.00 67.92 - 10.45 51.08 2002 0.00 0.00 0.00 0.00 0.00 0.00 62.26 1.19 0.00 0.00 2.96 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.39 0.00 0.00 0.02 0.00 68.82 - 10.45 51.08 2003 0.00 0.00 0.00 0.00 0.00 0.00 60.49 1.19 0.00 0.00 3.08 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.37 0.00 0.00 0.01 0.00 67.13 - 10.45 51.08 2004 0.00 0.00 0.00 0.00 0.00 0.00 61.78 1.10 0.00 0.00 3.20 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.21 0.00 0.00 0.00 0.00 68.29 - 10.45 51.08 2005 0.00 0.00 0.00 0.00 0.00 0.00 67.36 1.26 0.00 0.00 3.47 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.52 0.00 0.00 0.00 0.00 74.61 - 10.45 51.08 2006 0.00 0.00 0.00 0.00 0.00 0.00 66.88 1.21 0.00 0.00 3.59 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.42 0.00 0.00 0.00 0.00 74.09 - 10.45 51.08 2007 0.00 0.00 0.00 0.00 0.00 0.00 65.19 1.11 0.00 0.00 3.53 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.48 0.00 0.00 0.00 0.00 71.30 - 10.45 51.08 2008 0.00 0.00 0.00 0.00 0.00 0.00 66.72 0.82 0.00 0.00 4.30 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.63 0.00 0.00 0.00 0.00 73.48 - 10.45 51.08 2009 0.00 0.00 0.00 0.00 0.00 0.00 66.68 0.79 0.00 0.00 4.10 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.59 0.00 0.00 0.00 0.00 73.16 - 10.45 51.08 2010 0.00 0.00 0.00 0.00 0.00 0.00 67.22 0.80 0.00 0.00 4.21 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.59 0.00 0.00 0.00 0.00 73.82 - 10.45 51.08 2011 0.00 0.00 0.00 0.00 0.00 0.00 65.60 0.72 0.00 0.00 3.95 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.44 0.00 0.00 0.00 0.00 71.70 - 10.45 51.08 2012 0.00 0.00 0.00 0.00 0.00 0.00 71.42 0.83 0.00 0.00 4.66 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.66 0.00 0.00 0.00 0.00 78.57 diff --git a/rLPJGUESS/inst/extdata/outputsForTests/standard/outDirectory/runoff.out b/rLPJGUESS/inst/extdata/outputsForTests/standard/outDirectory/runoff.out deleted file mode 100644 index fbfc4f5..0000000 --- a/rLPJGUESS/inst/extdata/outputsForTests/standard/outDirectory/runoff.out +++ /dev/null @@ -1,63 +0,0 @@ - Lon Lat Year Surf Drain Base Total - 10.45 51.08 1951 77.4 117.0 6.9 201.2 - 10.45 51.08 1952 141.2 194.1 19.8 355.1 - 10.45 51.08 1953 34.3 63.4 3.0 100.7 - 10.45 51.08 1954 19.2 151.7 1.2 172.0 - 10.45 51.08 1955 51.0 148.6 11.5 211.1 - 10.45 51.08 1956 114.7 169.3 17.5 301.6 - 10.45 51.08 1957 9.2 143.4 0.6 153.3 - 10.45 51.08 1958 97.5 188.3 10.6 296.4 - 10.45 51.08 1959 0.0 35.2 0.0 35.2 - 10.45 51.08 1960 76.0 151.5 4.4 231.9 - 10.45 51.08 1961 75.9 172.5 11.7 260.1 - 10.45 51.08 1962 3.0 87.1 2.7 92.8 - 10.45 51.08 1963 10.8 123.5 7.0 141.3 - 10.45 51.08 1964 28.6 74.7 1.4 104.7 - 10.45 51.08 1965 32.1 163.6 5.1 200.8 - 10.45 51.08 1966 89.9 181.3 9.6 280.8 - 10.45 51.08 1967 0.2 148.2 0.2 148.6 - 10.45 51.08 1968 27.1 128.0 2.0 157.1 - 10.45 51.08 1969 50.9 129.2 12.3 192.4 - 10.45 51.08 1970 39.9 199.2 6.7 245.8 - 10.45 51.08 1971 16.0 70.3 0.2 86.5 - 10.45 51.08 1972 46.2 107.5 10.6 164.3 - 10.45 51.08 1973 11.5 115.1 2.8 129.5 - 10.45 51.08 1974 26.9 176.9 2.0 205.8 - 10.45 51.08 1975 0.0 87.7 0.0 87.7 - 10.45 51.08 1976 11.4 73.8 2.4 87.6 - 10.45 51.08 1977 77.7 181.4 9.1 268.2 - 10.45 51.08 1978 2.9 105.5 0.6 109.0 - 10.45 51.08 1979 58.0 144.8 4.1 206.9 - 10.45 51.08 1980 4.7 124.8 0.5 129.9 - 10.45 51.08 1981 71.4 166.3 8.8 246.4 - 10.45 51.08 1982 11.8 64.9 1.0 77.7 - 10.45 51.08 1983 47.9 104.2 5.6 157.7 - 10.45 51.08 1984 31.7 187.7 16.0 235.4 - 10.45 51.08 1985 2.8 81.5 0.6 84.9 - 10.45 51.08 1986 41.1 149.1 7.8 198.1 - 10.45 51.08 1987 96.2 207.0 14.1 317.4 - 10.45 51.08 1988 31.5 143.4 6.4 181.3 - 10.45 51.08 1989 19.5 123.4 1.5 144.3 - 10.45 51.08 1990 19.1 147.0 1.9 167.9 - 10.45 51.08 1991 7.9 46.5 1.5 55.9 - 10.45 51.08 1992 73.6 124.3 6.0 203.9 - 10.45 51.08 1993 45.9 156.7 5.0 207.5 - 10.45 51.08 1994 54.7 175.2 2.8 232.7 - 10.45 51.08 1995 41.5 169.3 7.7 218.5 - 10.45 51.08 1996 39.6 165.1 3.8 208.5 - 10.45 51.08 1997 32.2 156.4 8.7 197.2 - 10.45 51.08 1998 37.8 182.9 4.8 225.5 - 10.45 51.08 1999 21.6 137.6 4.0 163.2 - 10.45 51.08 2000 10.6 157.9 2.0 170.5 - 10.45 51.08 2001 23.9 188.3 6.7 218.8 - 10.45 51.08 2002 129.0 234.3 8.0 371.3 - 10.45 51.08 2003 6.7 84.4 2.3 93.5 - 10.45 51.08 2004 61.4 109.0 8.6 179.0 - 10.45 51.08 2005 5.9 123.3 2.1 131.2 - 10.45 51.08 2006 22.4 117.8 3.8 144.1 - 10.45 51.08 2007 143.8 181.6 9.0 334.4 - 10.45 51.08 2008 14.1 138.1 1.3 153.5 - 10.45 51.08 2009 43.1 182.9 3.0 229.0 - 10.45 51.08 2010 117.0 167.0 15.0 298.9 - 10.45 51.08 2011 63.4 95.5 1.0 159.9 - 10.45 51.08 2012 22.4 130.3 2.3 155.0 diff --git a/rLPJGUESS/inst/extdata/outputsForTests/standard/outDirectory/speciesheight.out b/rLPJGUESS/inst/extdata/outputsForTests/standard/outDirectory/speciesheight.out deleted file mode 100644 index 6b99fb9..0000000 --- a/rLPJGUESS/inst/extdata/outputsForTests/standard/outDirectory/speciesheight.out +++ /dev/null @@ -1,63 +0,0 @@ - Lon Lat Year Abi_alb BES Bet_pen Bet_pub Car_bet Cor_ave Fag_syl Fra_exc Jun_oxy MRS Pic_abi Pic_sit Pin_syl Pin_hal Pop_tre Que_coc Que_ile Que_pub Que_rob Til_cor Ulm_gla C3_gr C4_gr - 10.45 51.08 1951 0.00 0.00 0.00 30.98 12.97 0.00 27.23 14.29 0.00 0.00 5.89 0.00 0.00 0.00 0.00 0.00 0.00 0.00 14.29 10.07 0.00 0.00 0.00 - 10.45 51.08 1952 0.00 0.00 0.00 31.05 13.00 0.00 27.42 14.32 0.00 0.00 5.22 0.00 0.00 0.00 0.00 0.00 0.00 0.00 14.32 10.09 0.00 0.00 0.00 - 10.45 51.08 1953 0.00 0.00 0.00 31.12 13.03 0.00 27.64 14.35 0.00 0.00 5.30 0.00 0.00 0.00 0.00 0.00 0.00 0.00 14.35 10.12 0.00 0.00 0.00 - 10.45 51.08 1954 0.00 0.00 0.00 31.17 13.05 0.00 27.78 14.37 0.00 0.00 5.38 0.00 0.00 0.00 0.00 0.00 0.00 0.00 14.37 10.14 0.00 0.00 0.00 - 10.45 51.08 1955 0.00 0.00 0.00 31.23 13.07 0.00 27.93 14.40 0.00 0.00 5.43 0.00 0.00 0.00 0.00 0.00 0.00 0.00 14.40 10.16 0.00 0.00 0.00 - 10.45 51.08 1956 0.00 0.00 0.00 31.28 13.10 0.00 28.08 14.42 0.00 0.00 5.50 0.00 0.00 0.00 0.00 0.00 0.00 0.00 14.42 10.18 0.00 0.00 0.00 - 10.45 51.08 1957 0.00 0.00 0.00 31.34 13.12 0.00 28.25 14.45 0.00 0.00 5.55 0.00 0.00 0.00 0.00 0.00 0.00 0.00 14.45 10.20 0.00 0.00 0.00 - 10.45 51.08 1958 0.00 0.00 0.00 31.39 13.13 0.00 28.40 14.47 0.00 0.00 5.58 0.00 0.00 0.00 0.00 0.00 0.00 0.00 14.47 10.22 0.00 0.00 0.00 - 10.45 51.08 1959 0.00 0.00 0.00 31.45 13.16 0.00 28.62 14.50 0.00 0.00 5.64 0.00 0.00 0.00 0.00 0.00 0.00 0.00 14.50 10.24 0.00 0.00 0.00 - 10.45 51.08 1960 0.00 0.00 0.00 31.50 0.00 0.00 28.77 14.51 0.00 0.00 5.70 0.00 0.00 0.00 0.00 0.00 0.00 0.00 14.51 10.26 0.00 0.00 0.00 - 10.45 51.08 1961 0.00 0.00 0.00 31.55 0.00 0.00 28.93 14.54 0.00 0.00 5.76 0.00 0.00 0.00 0.00 0.00 0.00 0.00 14.54 10.28 0.00 0.00 0.00 - 10.45 51.08 1962 0.00 0.00 0.00 31.60 0.00 0.00 29.09 14.56 0.00 0.00 5.82 0.00 0.00 0.00 0.00 0.00 0.00 0.00 14.56 10.30 0.00 0.00 0.00 - 10.45 51.08 1963 0.00 0.00 0.00 31.64 0.00 0.00 29.25 14.58 0.00 0.00 5.35 0.00 0.00 0.00 0.00 0.00 0.00 0.00 14.58 10.32 0.00 0.00 0.00 - 10.45 51.08 1964 0.00 0.00 0.00 31.68 0.00 0.00 29.42 14.60 0.00 0.00 5.39 0.00 0.00 0.00 0.00 0.00 0.00 0.00 14.60 10.34 0.00 0.00 0.00 - 10.45 51.08 1965 0.00 0.00 0.00 31.73 0.00 0.00 29.57 14.62 0.00 0.00 5.47 0.00 0.00 0.00 0.00 0.00 0.00 0.00 14.62 10.36 0.00 0.00 0.00 - 10.45 51.08 1966 0.00 0.00 0.00 31.77 0.00 0.00 29.73 14.64 0.00 0.00 5.52 0.00 0.00 0.00 0.00 0.00 0.00 0.00 14.64 10.38 0.00 0.00 0.00 - 10.45 51.08 1967 0.00 0.00 0.00 31.80 0.00 0.00 29.87 14.65 0.00 0.00 5.60 0.00 0.00 0.00 0.00 0.00 0.00 0.00 14.65 10.39 0.00 0.00 0.00 - 10.45 51.08 1968 0.00 0.00 0.00 31.83 0.00 0.00 30.01 14.67 0.00 0.00 5.65 0.00 0.00 0.00 0.00 0.00 0.00 0.00 14.67 10.41 0.00 0.00 0.00 - 10.45 51.08 1969 0.00 0.00 0.00 31.86 0.00 0.00 30.15 14.68 0.00 0.00 5.31 0.00 0.00 0.00 0.00 0.00 0.00 0.00 14.68 10.42 0.00 0.00 0.00 - 10.45 51.08 1970 0.00 0.00 0.00 31.89 0.00 0.00 30.27 14.69 0.00 0.00 5.33 0.00 0.00 0.00 0.00 0.00 0.00 0.00 14.69 10.43 0.00 0.00 0.00 - 10.45 51.08 1971 0.00 0.00 0.00 31.92 0.00 0.00 30.41 14.71 0.00 0.00 5.41 0.00 0.00 0.00 0.00 0.00 0.00 0.00 14.71 10.45 0.00 0.00 0.00 - 10.45 51.08 1972 0.00 0.00 0.00 31.94 0.00 0.00 30.54 14.72 0.00 0.00 5.49 0.00 0.00 0.00 0.00 0.00 0.00 0.00 14.72 10.46 0.00 0.00 0.00 - 10.45 51.08 1973 0.00 0.00 0.00 31.96 0.00 0.00 30.65 14.73 0.00 0.00 5.27 0.00 0.00 0.00 0.00 0.00 0.00 0.00 14.73 10.47 0.00 0.00 0.00 - 10.45 51.08 1974 0.00 0.00 0.00 31.99 0.00 0.00 30.78 14.75 0.00 0.00 5.36 0.00 0.00 0.00 0.00 0.00 0.00 0.00 14.75 10.49 0.00 0.00 0.00 - 10.45 51.08 1975 0.00 0.00 0.00 32.00 0.00 0.00 30.88 14.75 0.00 0.00 5.44 0.00 0.00 0.00 0.00 0.00 0.00 0.00 14.75 10.50 0.00 0.00 0.00 - 10.45 51.08 1976 0.00 0.00 0.00 32.02 0.00 0.00 31.01 14.76 0.00 0.00 5.49 0.00 0.00 0.00 0.00 0.00 0.00 0.00 14.76 10.51 0.00 0.00 0.00 - 10.45 51.08 1977 0.00 0.00 0.00 32.04 0.00 0.00 31.12 14.77 0.00 0.00 5.56 0.00 0.00 0.00 0.00 0.00 0.00 0.00 14.77 10.53 0.00 0.00 0.00 - 10.45 51.08 1978 0.00 0.00 0.00 32.06 0.00 0.00 31.23 14.79 0.00 0.00 5.66 0.00 0.00 0.00 0.00 0.00 0.00 0.00 14.79 10.54 0.00 0.00 0.00 - 10.45 51.08 1979 0.00 0.00 0.00 32.07 0.00 0.00 31.33 14.80 0.00 0.00 5.76 0.00 0.00 0.00 0.00 0.00 0.00 0.00 14.80 10.56 0.00 0.00 0.00 - 10.45 51.08 1980 0.00 0.00 0.00 0.00 0.00 0.00 31.42 14.81 0.00 0.00 5.89 0.00 0.00 0.00 0.00 0.00 0.00 0.00 14.81 0.00 0.00 0.00 0.00 - 10.45 51.08 1981 0.00 0.00 0.00 0.00 0.00 0.00 31.56 14.83 0.00 0.00 5.97 0.00 0.00 0.00 0.00 0.00 0.00 0.00 14.83 0.00 0.00 0.00 0.00 - 10.45 51.08 1982 0.00 0.00 0.00 0.00 0.00 0.00 26.11 14.84 0.00 0.00 6.08 0.00 0.00 0.00 0.00 0.00 0.00 0.00 14.84 0.00 0.00 0.00 0.00 - 10.45 51.08 1983 0.00 0.00 0.00 0.00 0.00 0.00 26.24 14.85 0.00 0.00 6.15 0.00 0.00 0.00 0.00 0.00 0.00 0.00 14.85 0.00 0.00 0.00 0.00 - 10.45 51.08 1984 0.00 0.00 0.00 0.00 0.00 0.00 26.33 14.86 0.00 0.00 6.25 0.00 0.00 0.00 0.00 0.00 0.00 0.00 14.86 0.00 0.00 0.00 0.00 - 10.45 51.08 1985 0.00 0.00 0.00 0.00 0.00 0.00 26.48 14.88 0.00 0.00 6.35 0.00 0.00 0.00 0.00 0.00 0.00 0.00 14.88 0.00 0.00 0.00 0.00 - 10.45 51.08 1986 0.00 0.00 0.00 0.00 0.00 0.00 26.59 14.88 0.00 0.00 6.44 0.00 0.00 0.00 0.00 0.00 0.00 0.00 14.88 0.00 0.00 0.00 0.00 - 10.45 51.08 1987 0.00 0.00 0.00 0.00 0.00 0.00 26.72 14.90 0.00 0.00 6.54 0.00 0.00 0.00 0.00 0.00 0.00 0.00 14.90 0.00 0.00 0.00 0.00 - 10.45 51.08 1988 0.00 0.00 0.00 0.00 0.00 0.00 25.47 14.91 0.00 0.00 6.65 0.00 0.00 0.00 0.00 0.00 0.00 0.00 14.91 0.00 0.00 0.00 0.00 - 10.45 51.08 1989 0.00 0.00 0.00 0.00 0.00 0.00 25.70 14.94 0.00 0.00 6.85 0.00 0.00 0.00 0.00 0.00 0.00 0.00 14.94 0.00 0.00 0.00 0.00 - 10.45 51.08 1990 0.00 0.00 0.00 0.00 0.00 0.00 25.96 14.97 0.00 0.00 6.65 0.00 0.00 0.00 0.00 0.00 0.00 0.00 14.97 0.00 0.00 0.00 0.00 - 10.45 51.08 1991 0.00 0.00 0.00 0.00 0.00 0.00 26.16 15.00 0.00 0.00 6.48 0.00 0.00 0.00 0.00 0.00 0.00 0.00 15.00 0.00 0.00 0.00 0.00 - 10.45 51.08 1992 0.00 0.00 0.00 0.00 0.00 0.00 26.32 15.02 0.00 0.00 6.38 0.00 0.00 0.00 0.00 0.00 0.00 0.00 15.02 0.00 0.00 0.00 0.00 - 10.45 51.08 1993 0.00 0.00 0.00 0.00 0.00 0.00 26.52 15.05 0.00 0.00 6.28 0.00 0.00 0.00 0.00 0.00 0.00 0.00 15.05 0.00 0.00 0.00 0.00 - 10.45 51.08 1994 0.00 0.00 0.00 0.00 0.00 0.00 26.69 15.07 0.00 0.00 6.44 0.00 0.00 0.00 0.00 0.00 0.00 0.00 15.07 0.00 0.00 0.00 0.00 - 10.45 51.08 1995 0.00 0.00 0.00 0.00 0.00 0.00 26.82 15.08 0.00 0.00 6.32 0.00 0.00 0.00 0.00 0.00 0.00 0.00 15.08 0.00 0.00 0.00 0.00 - 10.45 51.08 1996 0.00 0.00 0.00 0.00 0.00 0.00 22.37 15.10 0.00 0.00 6.45 0.00 0.00 0.00 0.00 0.00 0.00 0.00 15.10 0.00 0.00 0.00 0.00 - 10.45 51.08 1997 0.00 0.00 0.00 0.00 0.00 0.00 17.20 15.12 0.00 0.00 6.63 0.00 0.00 0.00 0.00 0.00 0.00 0.00 15.12 0.00 0.00 0.00 0.00 - 10.45 51.08 1998 0.00 0.00 0.00 0.00 0.00 0.00 15.71 15.14 0.00 0.00 6.77 0.00 0.00 0.00 0.00 0.00 0.00 0.00 15.14 0.00 0.00 0.00 0.00 - 10.45 51.08 1999 0.00 0.00 0.00 0.00 0.00 0.00 14.59 15.17 0.00 0.00 6.67 0.00 0.00 0.00 0.00 0.00 0.00 0.00 15.17 0.00 0.00 0.00 0.00 - 10.45 51.08 2000 0.00 0.00 0.00 0.00 0.00 0.00 10.42 15.18 0.00 0.00 6.83 0.00 0.00 0.00 0.00 0.00 0.00 0.00 15.18 0.00 0.00 0.00 0.00 - 10.45 51.08 2001 0.00 0.00 0.00 0.00 0.00 0.00 10.59 15.20 0.00 0.00 6.94 0.00 0.00 0.00 0.00 0.00 0.00 0.00 15.20 0.00 0.00 0.00 0.00 - 10.45 51.08 2002 0.00 0.00 0.00 0.00 0.00 0.00 10.75 15.22 0.00 0.00 7.05 0.00 0.00 0.00 0.00 0.00 0.00 0.00 15.22 0.00 0.00 0.00 0.00 - 10.45 51.08 2003 0.00 0.00 0.00 0.00 0.00 0.00 10.90 15.23 0.00 0.00 7.16 0.00 0.00 0.00 0.00 0.00 0.00 0.00 15.23 0.00 0.00 0.00 0.00 - 10.45 51.08 2004 0.00 0.00 0.00 0.00 0.00 0.00 11.14 15.25 0.00 0.00 7.31 0.00 0.00 0.00 0.00 0.00 0.00 0.00 15.25 0.00 0.00 0.00 0.00 - 10.45 51.08 2005 0.00 0.00 0.00 0.00 0.00 0.00 11.32 15.27 0.00 0.00 7.44 0.00 0.00 0.00 0.00 0.00 0.00 0.00 15.27 0.00 0.00 0.00 0.00 - 10.45 51.08 2006 0.00 0.00 0.00 0.00 0.00 0.00 11.45 15.28 0.00 0.00 7.54 0.00 0.00 0.00 0.00 0.00 0.00 0.00 15.28 0.00 0.00 0.00 0.00 - 10.45 51.08 2007 0.00 0.00 0.00 0.00 0.00 0.00 11.64 15.31 0.00 0.00 7.75 0.00 0.00 0.00 0.00 0.00 0.00 0.00 15.31 0.00 0.00 0.00 0.00 - 10.45 51.08 2008 0.00 0.00 0.00 0.00 0.00 0.00 11.80 15.32 0.00 0.00 7.88 0.00 0.00 0.00 0.00 0.00 0.00 0.00 15.32 0.00 0.00 0.00 0.00 - 10.45 51.08 2009 0.00 0.00 0.00 0.00 0.00 0.00 11.49 15.34 0.00 0.00 8.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 15.34 0.00 0.00 0.00 0.00 - 10.45 51.08 2010 0.00 0.00 0.00 0.00 0.00 0.00 11.13 15.35 0.00 0.00 8.07 0.00 0.00 0.00 0.00 0.00 0.00 0.00 15.35 0.00 0.00 0.00 0.00 - 10.45 51.08 2011 0.00 0.00 0.00 0.00 0.00 0.00 11.36 15.38 0.00 0.00 8.23 0.00 0.00 0.00 0.00 0.00 0.00 0.00 15.38 0.00 0.00 0.00 0.00 - 10.45 51.08 2012 0.00 0.00 0.00 0.00 0.00 0.00 11.12 15.39 0.00 0.00 8.36 0.00 0.00 0.00 0.00 0.00 0.00 0.00 15.39 0.00 0.00 0.00 0.00 diff --git a/rLPJGUESS/inst/extdata/outputsForTests/standard/outDirectory/vmaxnlim.out b/rLPJGUESS/inst/extdata/outputsForTests/standard/outDirectory/vmaxnlim.out deleted file mode 100644 index 0cf9f33..0000000 --- a/rLPJGUESS/inst/extdata/outputsForTests/standard/outDirectory/vmaxnlim.out +++ /dev/null @@ -1,63 +0,0 @@ - Lon Lat YearAbi_alb BESBet_penBet_pubCar_betCor_aveFag_sylFra_excJun_oxy MRSPic_abiPic_sitPin_sylPin_halPop_treQue_cocQue_ileQue_pubQue_robTil_corUlm_gla C3_gr C4_gr Total - 10.45 51.08 1951 0.00 0.00 0.00 1.00 1.00 0.00 1.00 1.00 0.00 0.00 1.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.00 1.00 0.00 0.00 0.00 1.00 - 10.45 51.08 1952 0.00 0.00 0.00 1.00 1.00 0.00 1.00 1.00 0.00 0.00 1.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.00 1.00 0.00 0.00 0.00 1.00 - 10.45 51.08 1953 0.00 0.00 0.00 1.00 1.00 0.00 1.00 1.00 0.00 0.00 1.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.00 1.00 0.00 0.00 0.00 1.00 - 10.45 51.08 1954 0.00 0.00 0.00 1.00 1.00 0.00 1.00 1.00 0.00 0.00 1.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.00 1.00 0.00 0.00 0.00 1.00 - 10.45 51.08 1955 0.00 0.00 0.00 1.00 1.00 0.00 1.00 1.00 0.00 0.00 1.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.00 1.00 0.00 0.00 0.00 1.00 - 10.45 51.08 1956 0.00 0.00 0.00 1.00 1.00 0.00 1.00 1.00 0.00 0.00 1.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.00 1.00 0.00 0.00 0.00 1.00 - 10.45 51.08 1957 0.00 0.00 0.00 1.00 1.00 0.00 1.00 1.00 0.00 0.00 1.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.00 1.00 0.00 0.00 0.00 1.00 - 10.45 51.08 1958 0.00 0.00 0.00 1.00 1.00 0.00 1.00 1.00 0.00 0.00 1.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.00 1.00 0.00 0.00 0.00 1.00 - 10.45 51.08 1959 0.00 0.00 0.00 1.00 1.00 0.00 1.00 1.00 0.00 0.00 1.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.00 1.00 0.00 0.00 0.00 1.00 - 10.45 51.08 1960 0.00 0.00 0.00 1.00 0.00 0.00 1.00 1.00 0.00 0.00 1.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.00 1.00 0.00 0.00 0.00 1.00 - 10.45 51.08 1961 0.00 0.00 0.00 1.00 0.00 0.00 1.00 1.00 0.00 0.00 1.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.00 1.00 0.00 0.00 0.00 1.00 - 10.45 51.08 1962 0.00 0.00 0.00 1.00 0.00 0.00 1.00 1.00 0.00 0.00 1.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.00 1.00 0.00 0.00 0.00 1.00 - 10.45 51.08 1963 0.00 0.00 0.00 1.00 0.00 0.00 1.00 1.00 0.00 0.00 1.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.00 1.00 0.00 0.00 0.00 1.00 - 10.45 51.08 1964 0.00 0.00 0.00 1.00 0.00 0.00 1.00 1.00 0.00 0.00 1.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.00 1.00 0.00 0.00 0.00 1.00 - 10.45 51.08 1965 0.00 0.00 0.00 1.00 0.00 0.00 1.00 1.00 0.00 0.00 1.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.00 1.00 0.00 0.00 0.00 1.00 - 10.45 51.08 1966 0.00 0.00 0.00 1.00 0.00 0.00 1.00 1.00 0.00 0.00 1.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.00 1.00 0.00 0.00 0.00 1.00 - 10.45 51.08 1967 0.00 0.00 0.00 1.00 0.00 0.00 1.00 1.00 0.00 0.00 1.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.00 1.00 0.00 0.00 0.00 1.00 - 10.45 51.08 1968 0.00 0.00 0.00 1.00 0.00 0.00 1.00 1.00 0.00 0.00 1.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.00 1.00 0.00 0.00 0.00 1.00 - 10.45 51.08 1969 0.00 0.00 0.00 1.00 0.00 0.00 1.00 1.00 0.00 0.00 1.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.00 1.00 0.00 0.00 0.00 1.00 - 10.45 51.08 1970 0.00 0.00 0.00 1.00 0.00 0.00 1.00 1.00 0.00 0.00 1.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.00 1.00 0.00 0.00 0.00 1.00 - 10.45 51.08 1971 0.00 0.00 0.00 1.00 0.00 0.00 1.00 1.00 0.00 0.00 1.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.00 1.00 0.00 0.00 0.00 1.00 - 10.45 51.08 1972 0.00 0.00 0.00 1.00 0.00 0.00 1.00 1.00 0.00 0.00 1.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.00 1.00 0.00 0.00 0.00 1.00 - 10.45 51.08 1973 0.00 0.00 0.00 1.00 0.00 0.00 1.00 1.00 0.00 0.00 1.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.00 1.00 0.00 0.00 0.00 1.00 - 10.45 51.08 1974 0.00 0.00 0.00 1.00 0.00 0.00 1.00 1.00 0.00 0.00 1.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.00 1.00 0.00 0.00 0.00 1.00 - 10.45 51.08 1975 0.00 0.00 0.00 1.00 0.00 0.00 1.00 1.00 0.00 0.00 1.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.00 1.00 0.00 0.00 0.00 1.00 - 10.45 51.08 1976 0.00 0.00 0.00 1.00 0.00 0.00 1.00 1.00 0.00 0.00 1.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.00 1.00 0.00 0.00 0.00 1.00 - 10.45 51.08 1977 0.00 0.00 0.00 1.00 0.00 0.00 1.00 1.00 0.00 0.00 1.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.00 1.00 0.00 0.00 0.00 1.00 - 10.45 51.08 1978 0.00 0.00 0.00 1.00 0.00 0.00 1.00 1.00 0.00 0.00 1.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.00 1.00 0.00 0.00 0.00 1.00 - 10.45 51.08 1979 0.00 0.00 0.00 1.00 0.00 0.00 1.00 1.00 0.00 0.00 1.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.00 1.00 0.00 0.00 0.00 1.00 - 10.45 51.08 1980 0.00 0.00 0.00 0.00 0.00 0.00 1.00 1.00 0.00 0.00 1.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.00 0.00 0.00 0.00 0.00 1.00 - 10.45 51.08 1981 0.00 0.00 0.00 0.00 0.00 0.00 1.00 1.00 0.00 0.00 1.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.00 0.00 0.00 0.00 0.00 1.00 - 10.45 51.08 1982 0.00 0.00 0.00 0.00 0.00 0.00 1.00 1.00 0.00 0.00 1.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.00 0.00 0.00 0.00 0.00 1.00 - 10.45 51.08 1983 0.00 0.00 0.00 0.00 0.00 0.00 1.00 1.00 0.00 0.00 1.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.00 0.00 0.00 0.00 0.00 1.00 - 10.45 51.08 1984 0.00 0.00 0.00 0.00 0.00 0.00 1.00 1.00 0.00 0.00 1.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.00 0.00 0.00 0.00 0.00 1.00 - 10.45 51.08 1985 0.00 0.00 0.00 0.00 0.00 0.00 1.00 1.00 0.00 0.00 1.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.00 0.00 0.00 0.00 0.00 1.00 - 10.45 51.08 1986 0.00 0.00 0.00 0.00 0.00 0.00 1.00 1.00 0.00 0.00 1.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.00 0.00 0.00 0.00 0.00 1.00 - 10.45 51.08 1987 0.00 0.00 0.00 0.00 0.00 0.00 1.00 1.00 0.00 0.00 1.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.00 0.00 0.00 0.00 0.00 1.00 - 10.45 51.08 1988 0.00 0.00 0.00 0.00 0.00 0.00 1.00 1.00 0.00 0.00 1.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.00 0.00 0.00 0.00 0.00 1.00 - 10.45 51.08 1989 0.00 0.00 0.00 0.00 0.00 0.00 1.00 1.00 0.00 0.00 1.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.00 0.00 0.00 0.00 0.00 1.00 - 10.45 51.08 1990 0.00 0.00 0.00 0.00 0.00 0.00 1.00 1.00 0.00 0.00 1.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.00 0.00 0.00 1.00 0.00 1.00 - 10.45 51.08 1991 0.00 0.00 0.00 0.00 0.00 0.00 1.00 1.00 0.00 0.00 1.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.00 0.00 0.00 1.00 0.00 1.00 - 10.45 51.08 1992 0.00 0.00 0.00 0.00 0.00 0.00 1.00 1.00 0.00 0.00 1.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.00 0.00 0.00 1.00 0.00 1.00 - 10.45 51.08 1993 0.00 0.00 0.00 0.00 0.00 0.00 1.00 1.00 0.00 0.00 1.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.00 0.00 0.00 1.00 0.00 1.00 - 10.45 51.08 1994 0.00 0.00 0.00 0.00 0.00 0.00 1.00 1.00 0.00 0.00 1.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.00 0.00 0.00 1.00 0.00 1.00 - 10.45 51.08 1995 0.00 0.00 0.00 0.00 0.00 0.00 1.00 1.00 0.00 0.00 1.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.00 0.00 0.00 1.00 0.00 1.00 - 10.45 51.08 1996 0.00 0.00 0.00 0.00 0.00 0.00 1.00 1.00 0.00 0.00 1.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.00 0.00 0.00 1.00 0.00 1.00 - 10.45 51.08 1997 0.00 0.00 0.00 0.00 0.00 0.00 1.00 1.00 0.00 0.00 1.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.00 0.00 0.00 1.00 0.00 1.00 - 10.45 51.08 1998 0.00 0.00 0.00 0.00 0.00 0.00 1.00 1.00 0.00 0.00 1.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.00 0.00 0.00 1.00 0.00 1.00 - 10.45 51.08 1999 0.00 0.00 0.00 0.00 0.00 0.00 1.00 1.00 0.00 0.00 1.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.00 0.00 0.00 1.00 0.00 1.00 - 10.45 51.08 2000 0.00 0.00 0.00 0.00 0.00 0.00 1.00 1.00 0.00 0.00 1.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.00 0.00 0.00 1.00 0.00 1.00 - 10.45 51.08 2001 0.00 0.00 0.00 0.00 0.00 0.00 1.00 1.00 0.00 0.00 1.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.00 0.00 0.00 1.00 0.00 1.00 - 10.45 51.08 2002 0.00 0.00 0.00 0.00 0.00 0.00 1.00 1.00 0.00 0.00 1.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.00 0.00 0.00 1.00 0.00 1.00 - 10.45 51.08 2003 0.00 0.00 0.00 0.00 0.00 0.00 1.00 1.00 0.00 0.00 1.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.00 0.00 0.00 1.00 0.00 1.00 - 10.45 51.08 2004 0.00 0.00 0.00 0.00 0.00 0.00 1.00 1.00 0.00 0.00 1.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.00 0.00 0.00 1.00 0.00 1.00 - 10.45 51.08 2005 0.00 0.00 0.00 0.00 0.00 0.00 1.00 1.00 0.00 0.00 1.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.00 0.00 0.00 1.00 0.00 1.00 - 10.45 51.08 2006 0.00 0.00 0.00 0.00 0.00 0.00 1.00 1.00 0.00 0.00 1.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.00 0.00 0.00 1.00 0.00 1.00 - 10.45 51.08 2007 0.00 0.00 0.00 0.00 0.00 0.00 1.00 1.00 0.00 0.00 1.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.00 0.00 0.00 1.00 0.00 1.00 - 10.45 51.08 2008 0.00 0.00 0.00 0.00 0.00 0.00 1.00 1.00 0.00 0.00 1.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.00 0.00 0.00 1.00 0.00 1.00 - 10.45 51.08 2009 0.00 0.00 0.00 0.00 0.00 0.00 1.00 1.00 0.00 0.00 1.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.00 0.00 0.00 0.00 0.00 1.00 - 10.45 51.08 2010 0.00 0.00 0.00 0.00 0.00 0.00 1.00 1.00 0.00 0.00 1.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.00 0.00 0.00 0.00 0.00 1.00 - 10.45 51.08 2011 0.00 0.00 0.00 0.00 0.00 0.00 1.00 1.00 0.00 0.00 1.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.00 0.00 0.00 0.00 0.00 1.00 - 10.45 51.08 2012 0.00 0.00 0.00 0.00 0.00 0.00 1.00 1.00 0.00 0.00 1.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.00 0.00 0.00 0.00 0.00 1.00 diff --git a/rLPJGUESS/man/LPJData-class.Rd b/rLPJGUESS/man/LPJData-class.Rd index 9f47adf..5630f20 100644 --- a/rLPJGUESS/man/LPJData-class.Rd +++ b/rLPJGUESS/man/LPJData-class.Rd @@ -14,7 +14,71 @@ a S4 class object with two slots \itemize{ This is a S4 class object to store both the LPJ-GUESS outputs and the information that was passed to LPJ-GUESS. } +\examples{ +\dontrun{ +### Serial run ### +# After running rLPJ or getLPJData +result <- runLPJ(mainDir, settings= settings) + + result + + class : LPJData + run directory : /some/absolute/paht/runDirectory + LPJ template 1 : global.ins + LPJ template 2 : global_cf.ins + grid cells : 1 cell(s) + 0 Somewhere + LPJ model outputs : 39 output(s) + aaet agpp aiso amon anpp cflux clitter cmass cpool cton_leaf dens + firert fpc speciesheight lai maet mevap mgpp mintercep miso mlai mmon + mnee mnpp mpet mra mrh mrunoff mwcont_lower mwcont_upper nflux ngases + nlitter nmass npool nsources nuptake runoff vmaxnlim + +### Parallel run ### +# After running runLPJ (20 simulations) +str(result,1) + + List of 20 + + $ :Formal class 'LPJData' [package "rLPJGUESS"] with 2 slots + + $ :Formal class 'LPJData' [package "rLPJGUESS"] with 2 slots + + $ :Formal class 'LPJData' [package "rLPJGUESS"] with 2 slots + + $ :Formal class 'LPJData' [package "rLPJGUESS"] with 2 slots + + $ :Formal class 'LPJData' [package "rLPJGUESS"] with 2 slots + + $ :Formal class 'LPJData' [package "rLPJGUESS"] with 2 slots + + [...] + + +## LPJData options +# Access the model outputs +result["dataTypes"] + +# Access speficic outputs +result["lai"] + +# Acces the runInfo +result["runInfo"] + +# Access specific runInfo like template name +result["template1"] + +# Access specific runInfo like template content +result["template1Mem"] + +# Check what other information is available in each slot +names(result["runInfo"]) +names(result["dataTypes"]) + +} +} \author{ Ramiro Silveyra Gonzalez } \keyword{rLPJGUESS} + diff --git a/rLPJGUESS/man/LPJSetup-class.Rd b/rLPJGUESS/man/LPJSetup-class.Rd index 8d96e62..67b3cf1 100644 --- a/rLPJGUESS/man/LPJSetup-class.Rd +++ b/rLPJGUESS/man/LPJSetup-class.Rd @@ -22,7 +22,29 @@ a S4 class object with five slots This is a S4 class object to store the configuration for parallel runs to be used by runLPJ. } +\examples{ +\dontrun{ +# Create a parallel setup for MPI cluster +mySetup <- setupLPJParallel(numCores= 20, clusterType = "MPI", mainDir=mainDir) + +# Create a parallel setup for SOCK cluster +mySetup <- setupLPJParallel(numCores= 3, clusterType = "SOCK", mainDir=mainDir) + +# Run LPJ-GUESS in parallel +result <- runLPJ(x = mySetup, settings= settings, parameterList = parameterList ) + + +# Accessing information +mySetup["clusterType"] +mySetup["numCores"] +mySetup["mainDir"] +mySetup["runDir"] +mySetup["outDir"] + +} +} \author{ Ramiro Silveyra Gonzalez } \keyword{rLPJGUESS} + diff --git a/rLPJGUESS/man/callLPJ.Rd b/rLPJGUESS/man/callLPJ.Rd index 26d3a77..cbf8ac7 100644 --- a/rLPJGUESS/man/callLPJ.Rd +++ b/rLPJGUESS/man/callLPJ.Rd @@ -24,15 +24,44 @@ none This function does a system call, passing a template to the LPJ model. } +\details{ +Please note that this function is integrated in \code{\link{runLPJ}}. +} \note{ Based an older code of Istem Fer, Uni Potsdam } \examples{ \dontrun{ -callLPJ("/home/LPJrun", "/home/LPJrun/runDirectory1", "global_cru.ins") +# main directory +mainDir <- "/some/absolute/path/mainDir" +list.files(mainDir) +[1] "guess" or "guesscmd.exe" # link to the model executable +[2] "gridlist.txt" # list of gridcells +[3] "global.ins" # template1 (optional) +[4] "global_cru.ins" # template2 (optional) + +# The run directory that is whithin the mainDir +runDir <- "/some/absolute/path/mainDir/runDirectory" + +## mode cru ## +# The template2 of the model what is within the runDirectoy. +template2 <- "global_cru.ins" +template2 <- "europe_cru.ins" + +# Call the model +callLPJ(mainDir = mainDir, runDir = runDir, template2 = template2, mode = "cru") + +## mode cf ## +# The template2 of the model what is within the runDirectoy. +template2 <- "global_cf.ins" +template2 <- "europe_cf.ins" + +# Call the model +callLPJ(mainDir = mainDir, runDir = runDir, template2 = template2, mode = "cf") } } \author{ Ramiro Silveyra Gonzalez, Maurizio Bagnara, Florian Hartig } \keyword{rLPJGUESS} + diff --git a/rLPJGUESS/man/exitMPI.Rd b/rLPJGUESS/man/exitMPI.Rd index f0f9145..139ca97 100644 --- a/rLPJGUESS/man/exitMPI.Rd +++ b/rLPJGUESS/man/exitMPI.Rd @@ -18,13 +18,35 @@ package manual for futher advise on using mpi.finalize and mpi.quit. } \examples{ \dontrun{ +##### MPI CLUSTER ###### +# Create a parallel setup for MPI cluster +mySetup <- setupLPJParallel(numCores= 20, clusterType = "MPI", mainDir=mainDir) +mySetup +# 20 different parameters to test (the number must be larger than the number of cores) + # as a matrix +parameterList <- as.matrix(seq(1,5, len = 20)) +colnames(parameterList) <- "common_emax" + # as a list +dummy <- list (common_emax = NULL) +par <- seq(1,5, len = 20) +parameterList <- vector("list", length(par)) +for (i in 1:length(par)) { + dummy$common_emax <- par[i] + parameterList[[i]] <- dummy +} + +# Run the model +result <- runLPJ(mySetup, settings= settings, parameterList = parameterList ) + +# At the end of the script call exitMPI() exitMPI() - } } -\seealso{ -\url{https://cran.r-project.org/web/packages/Rmpi/Rmpi.pdf} } \author{ Ramiro Silveyra Gonzalez, Maurizio Bagnara, Florian Hartig } +\seealso{ +\url{https://cran.r-project.org/web/packages/Rmpi/Rmpi.pdf} +} \keyword{rLPJGUESS} + diff --git a/rLPJGUESS/man/extract-methods.Rd b/rLPJGUESS/man/extract-methods.Rd index bc48a19..44dc3cb 100644 --- a/rLPJGUESS/man/extract-methods.Rd +++ b/rLPJGUESS/man/extract-methods.Rd @@ -28,3 +28,4 @@ Extract parts of LPJData Extract parts of LPJSetup } + diff --git a/rLPJGUESS/man/getDesign.Rd b/rLPJGUESS/man/getDesign.Rd index 88fef11..f6b0e62 100644 --- a/rLPJGUESS/man/getDesign.Rd +++ b/rLPJGUESS/man/getDesign.Rd @@ -20,9 +20,54 @@ This function returns the LPJ-GUESS default design for running the model } \examples{ \dontrun{ -parameterList <- getParameterList("global") +# Select the model scale +scaleLPJ <- "europe" + +# Create the general settings +LPJsettings <- list(file.co2 = file.path(mainDir, "crudata", "co2_1765-2500_RCP3.txt"), + file.cru = file.path(mainDir, "crudata", "cru_1901_2006.bin"), + file.cru.misc = file.path(mainDir, "crudata", "cru_1901_2006misc.bin"), + file.ndep = file.path(mainDir, "crudata", "GlobalNitrogenDeposition.bin"), + file.temp = file.path(mainDir, "temp.nc"), + file.prec = file.path(mainDir, "prec.nc"), + file.insol = file.path(mainDir, "rad.nc"), + variable.temp = "temp", variable.insol = "rad", + variable.prec = "prec", delete = FALSE, save = FALSE, processing = TRUE, + plot.data = FALSE, save.plots = FALSE, scale = scaleLPJ, mode = "cf", + gridList = "gridlist.txt") + +# Define the design for the simulation: number of patches simulated, +# disturbances, and other simulation options + +# Obtain the standard design +designLPJ <- getDesign(scaleLPJ, list = TRUE) + +# Modify the desired options +designLPJ$run_vegmode <- "cohort" +designLPJ$run_ifcentury <- 0 +designLPJ$run_iffire <- 0 +designLPJ$run_ifnlim <- 0 +designLPJ$run_ifstochestab <- 0 +designLPJ$run_ifstochmort <- 0 +designLPJ$run_patcharea <- 25^2 +designLPJ$run_npatch <- 1 +designLPJ$run_ifdisturb <- 0 +designLPJ$run_nyear_spinup <- 1 +designLPJ$run_freenyears <- 0 +designLPJ$run_save_state <- 0 +designLPJ$run_restart <- 0 +designLPJ$run_state_path <- mainDir + +# Add the desing to the settings +LPJsettings$design <- designLPJ + +# Run the model +results_SPP <- runLPJ(x = mainDur, parameterList = parameters, + typeList = typeList, settings = LPJsettings) + } } \author{ Ramiro Silveyra Gonzalez, Maurizio Bagnara } + diff --git a/rLPJGUESS/man/getLPJData.Rd b/rLPJGUESS/man/getLPJData.Rd index 4e8653e..17148cc 100644 --- a/rLPJGUESS/man/getLPJData.Rd +++ b/rLPJGUESS/man/getLPJData.Rd @@ -20,17 +20,20 @@ the processed outputs of the model (optional)} into time series (default is FALSE)} } \value{ -the processed data returned in a S4 Class: LPJData Class +the processed data returned in a S4 Class: \linkS4class{LPJData} class } \description{ This function reads the ASCII outputs produced by LPJ-GUESS. It takes a list of output types (typeList) and finds them in the specified path. -The data is stored in a data class object: LPJData. If processing is TRUE, +The data is stored in a data class object: \linkS4class{LPJData}. If processing is TRUE, the data will be stored as zoo time series. Ohterwise, as data frames. } \details{ +Please note that this function is integrated in \code{\link{runLPJ}}, +which alread returns the data as a \linkS4class{LPJData} object. + To convert the outputs into zoo time series is only supported when running the -model for one grid cell. For running LPJ-GUESS for several grid cells, please set +model for one grid cell. When running LPJ-GUESS for several grid cells, please set processing to FALSE. } \note{ @@ -38,13 +41,30 @@ Based on an older code of Joerg Steinkamp } \examples{ \dontrun{ -LPJout <- getLPJData( typeList = c("aaet", "cflux","lai", "nflux"), - "~/path/to/output/files", runInfo = list(parameter1 = 0.5, grid = 1)) +# Specify folder where the ASCII outputs produced by LPJ-GUESS files are located +outDir <- "/some/absolute/path/runDirectory/outDirectory" +list.files(outDir) + +# Any specific output you are interest in +typeList <- c("aaet","lai") + +# What information should be associated to the data +runInfo <- list(parameters = 0.5, grid = 1) + +# Call the function and obtain the outputs as LPJData and + # stored as zoo time series +LPJout <- getLPJData(x = outDir, typeList = typeList, runInfo = runInfo, processing = TRUE) + # stored as data.frame +LPJout <- getLPJData(x = outDir, typeList = typeList, runInfo = runInfo, processing = FALSE) + +# Plot the data +plotLPJData(LPJout) + } } +\author{ +Ramiro Silveyra Gonzalez, Maurizio Bagnara, Florian Hartig } \seealso{ \linkS4class{LPJData}, \url{https://cran.r-project.org/web/packages/zoo/zoo.pdf} } -\author{ -Ramiro Silveyra Gonzalez, Maurizio Bagnara, Florian Hartig -} + diff --git a/rLPJGUESS/man/getParameterList.Rd b/rLPJGUESS/man/getParameterList.Rd index 8445493..a42efa8 100644 --- a/rLPJGUESS/man/getParameterList.Rd +++ b/rLPJGUESS/man/getParameterList.Rd @@ -19,11 +19,36 @@ a list or a matrix with parameter names and their values This function returns the LPJ-GUESS parameter list required for the writeTemplate function. It also allows users to see the default values of the templates. } +\details{ +To obtain the parameters used in previous runs, see \code{\link{getRunInfo}}. +} \examples{ \dontrun{ -parameterList <- getParameterList("global") +# Get the default parameters as a list +parameterList <- getParameterList("global", list = TRUE) +parameterList <- getParameterList("europe", list = TRUE) + +# Modify any parameter +parameterList$common_emax <- 1 +parameterList[["common_emax"]] <- 1 + + +# Get the default parameters as a matrix +parameterList <- getParameterList("global", list = FALSE) +parameterList <- getParameterList("europe", list = FALSE) + +# Modify any parameter +parameterList["common_emax",] <- 1 + +# Call runLPJ with the desired parameter +result <- runLPJ(x=mainDir, settings=settings, parameterList = parameterList) + } } \author{ Ramiro Silveyra Gonzalez, Maurizio Bagnara } +\seealso{ +\code{\link{runLPJ}}, \code{\link{getRunInfo}} +} + diff --git a/rLPJGUESS/man/getRunInfo.Rd b/rLPJGUESS/man/getRunInfo.Rd index 27fa508..cd73c72 100644 --- a/rLPJGUESS/man/getRunInfo.Rd +++ b/rLPJGUESS/man/getRunInfo.Rd @@ -8,15 +8,14 @@ getRunInfo(x, parameters = F) } \arguments{ \item{x}{a character string indicating the absolute path to the runInfoDir folder or -a R object produced by runLPJ} +a R object produced by \code{\link{runLPJ}}} \item{parameters}{a character boolean to specify whether to return the parameters -instead of the LPJData objects} +instead of the \linkS4class{LPJData} objects} } \description{ -This function reads the runLPj outputs stored in the runInfoDir -and returns as a list, with the same structure as the runLPJ outputs. Additionally, -allows to retrieve the parameters from the runInfoDir files or the runLPJ outputs. +This function reads the \code{\link{runLPJ}} outputs stored in the runInfo file. Additionally, +allows to retrieve the parameters from the runInfoDir files. } \examples{ \dontrun{ @@ -24,13 +23,16 @@ allows to retrieve the parameters from the runInfoDir files or the runLPJ output result <- getRunInfo("/some/absolute/path/runInfo_2016_08_11_121507") # recover only the paramaters from the runInfo folder -parameters <- getRunInfo("/some/absolute/path/runInfo_2016_08_11_121507", parameters =T) +parameters <- getRunInfo("/some/absolute/path/runInfo_2016_08_11_121507", parameters =TRUE) # recover only the parameters from the result -parameters <- getRunInfo(result, parameters =T) - +parameters <- getRunInfo(result, parameters =TRUE) } } \author{ Ramiro Silveyra Gonzalez } +\seealso{ +\code{\link{runLPJ}}, \linkS4class{LPJData} +} + diff --git a/rLPJGUESS/man/getTemplate.Rd b/rLPJGUESS/man/getTemplate.Rd index 1c0248e..f275186 100644 --- a/rLPJGUESS/man/getTemplate.Rd +++ b/rLPJGUESS/man/getTemplate.Rd @@ -20,11 +20,27 @@ This function returns the LPJ-GUESS templates. } \examples{ \dontrun{ -template <- getTemplate("global.ins") -getTemplate("global.ins", "/home/LPJTemplates/") +# Get templates as r objects +template <- getTemplate("global") +template <- getTemplate("global_cf") +template <- getTemplate("global_cru") +template <- getTemplate("europe") +template <- getTemplate("europe_cf") +template <- getTemplate("europe_cru") + + +# Get templates written in a folder +getTemplate("global","/home/mainDir/") +getTemplate("global_cf","/home/mainDir/") +getTemplate("global_cru","/home/mainDir/") +getTemplate("europe","/home/mainDir/") +getTemplate("europe_cf","/home/mainDir/") +getTemplate("europe_cru", "/home/mainDir/") +) } } \author{ Ramiro Silveyra Gonzalez, Maurizio Bagnara, Florian Hartig } \keyword{rLPJGUESS} + diff --git a/rLPJGUESS/man/getTypeList.Rd b/rLPJGUESS/man/getTypeList.Rd index 753f674..8344196 100644 --- a/rLPJGUESS/man/getTypeList.Rd +++ b/rLPJGUESS/man/getTypeList.Rd @@ -13,10 +13,10 @@ a character vector with the default output types This function returns the LPJ-GUESS output type list } \examples{ -\dontrun{ typelist <- getTypeList() -} +typelist } \author{ Ramiro Silveyra Gonzalez, Maurizio Bagnara } + diff --git a/rLPJGUESS/man/plotLPJData.Rd b/rLPJGUESS/man/plotLPJData.Rd index 3acc33e..87c5c11 100644 --- a/rLPJGUESS/man/plotLPJData.Rd +++ b/rLPJGUESS/man/plotLPJData.Rd @@ -8,7 +8,7 @@ plotLPJData(x, typeList = NULL, outDir = NULL, save.plots = FALSE, prefix = "") } \arguments{ -\item{x}{a LPJData object.} +\item{x}{a \linkS4class{LPJData} object} \item{typeList}{a character vector with the outputs to be plotted} @@ -16,28 +16,75 @@ plotLPJData(x, typeList = NULL, outDir = NULL, save.plots = FALSE, saved, if save.plot set to TRUE} \item{save.plots}{a boolean indicating whether the plots are saved in the outDir. -Plots will be saved as pdf} +Plots will be saved as pdf.} \item{prefix}{a character string specifying the prefix to be added to the plots files. Only relevant if saving plots is TRUE} } \value{ -plots for data types included in typeList. The grid cells will be plotted independently +time series plots for the data types included in typeList. +The grid cells will be plotted independently. } \description{ -This function reads data from a LPJData object and plots the +This function reads data from a \linkS4class{LPJData} object and plots the variables against time. If the save.plots is set to TRUE, plots are saved in the output folder. } +\details{ +Please note that this function is integrated in \code{\link{runLPJ}}. +The call to \code{\link{runLPJ}} can plot straigthaway the outputs (see examples below). +} \examples{ \dontrun{ -plotLPJData(data, typeList = c("aaet", "lai"), - outDir = "/runDir/outDir", save.plots = FALSE) -} +### Plot LPJData object ### + +# After runLPJ +result <- runLPJ(mainDir, settings= settings) +plotLPJData(result, save.plots = FALSE) + +# After getLPJData +result <- getLPJData(x = outDir, typeList = typeList, runInfo = runInfo, processing = TRUE) +result <- getLPJData(x = outDir, typeList = typeList, runInfo = runInfo, processing = FALSE) +plotLPJData(result, save.plots = FALSE) + + +# Plot specific outputs +plotLPJData(result, typeList = c("aaet", "lai"), save.plots = FALSE) + +# Save plots +plotLPJData(result, outDir = "/runDir/outDir", save.plots = TRUE) + + +### Plot from runLPJ ### +LPJsettings <- list(file.co2 = file.path(mainDir, "crudata", "co2_1765-2500_RCP3.txt"), + file.cru = file.path(mainDir, "crudata", "cru_1901_2006.bin"), + file.cru.misc = file.path(mainDir, "crudata", "cru_1901_2006misc.bin"), + file.ndep = file.path(mainDir, "crudata", "GlobalNitrogenDeposition.bin"), + file.temp = file.path(mainDir, "temp.nc"), + file.prec = file.path(mainDir, "prec.nc"), + file.insol = file.path(mainDir, "rad.nc"), + variable.temp = "temp", variable.insol = "rad", + variable.prec = "prec", delete = FALSE, save = FALSE, processing = TRUE, + plot.data = FALSE, save.plots = FALSE, scale = scaleLPJ, mode = "cf", + gridList = "gridlist.txt") + +# Activate plot option +LPJsettings$plot.data <- TRUE + +# Save plots +LPJsettings$plot.data <- TRUE +LPJsettings$save.plots <- TRUE + +# runLPJ and plot +results <- runLPJ(x = mainDur, settings = LPJsettings) + } -\seealso{ -\url{https://cran.r-project.org/web/packages/zoo/zoo.pdf} } \author{ Ramiro Silveyra Gonzalez, Maurizio Bagnara, Florian Hartig } +\seealso{ +\code{\link{runLPJ}}, \linkS4class{LPJData}, + \url{https://cran.r-project.org/web/packages/zoo/zoo.pdf} +} \keyword{rLPJGUESS} + diff --git a/rLPJGUESS/man/rLPJGUESS-package.Rd b/rLPJGUESS/man/rLPJGUESS-package.Rd index fa0a963..db7f795 100644 --- a/rLPJGUESS/man/rLPJGUESS-package.Rd +++ b/rLPJGUESS/man/rLPJGUESS-package.Rd @@ -37,7 +37,7 @@ information and some examples (you can open it by running this command: \item \code{\link{getParameterList}} To obtain the parameter default values \item \code{\link{getDesign}} To obtain the default desgin \item \code{\link{getTypeList}} To obtain the default output model types - \item \code{\link{getRunInfo}} To recover data or parameters from the runInfoDir + \item \code{\link{getRunInfo}} To recover data or parameters from the runInfo file } } @@ -50,6 +50,14 @@ information and some examples (you can open it by running this command: } } +\section{V. S4 classes}{ + \itemize{ + \item \linkS4class{LPJData} To store both LPJ-GUESS outputs +and run information + \item \linkS4class{LPJSetup} To store the configuration for parallel +runs +} +} \author{ Except where indicated otherwise, the functions in this package were written by Ramiro Silveyra Gonzalez, Maurizio Bagnara and Florian Hartig @@ -57,3 +65,4 @@ Except where indicated otherwise, the functions in this package were \keyword{LPJ-GUESS,} \keyword{package} \keyword{rLPJGUESS} + diff --git a/rLPJGUESS/man/replace-methods.Rd b/rLPJGUESS/man/replace-methods.Rd index 4d5a14d..a5d4cbd 100644 --- a/rLPJGUESS/man/replace-methods.Rd +++ b/rLPJGUESS/man/replace-methods.Rd @@ -21,3 +21,4 @@ \description{ Replace parts of LPJData } + diff --git a/rLPJGUESS/man/runLPJ.Rd b/rLPJGUESS/man/runLPJ.Rd index 510303b..6e69bdb 100644 --- a/rLPJGUESS/man/runLPJ.Rd +++ b/rLPJGUESS/man/runLPJ.Rd @@ -10,12 +10,12 @@ runLPJ(x, settings, typeList = NULL, parameterList = NULL) \item{x}{either a LPJSetup object created with the setupLPJParallel function or a character string indicating the path to the directory where the model link and template are located, and in which the function will create -the directory structure for the outputs} +the directory structure for the outputs.} \item{settings}{additional parameters \itemize{ \item gridList a character string providing the name of the text file with the grids to be included in the model, e.g, gridlist.txt. It must be in the mainDir. -Provide only the file name, not the path +Provide only the file name, not the path. \item mode a character string indicating whether using cru or cf data \item scale a character string indicating whether the model runs global or for europe @@ -51,72 +51,89 @@ minimum temperature input file maximum temperature input file \item template1 character string providing the general model template, e.g, global.ins. It must be in the mainDir. Provide only the file name, - not the path. If not provided, package templates will be used + not the path. If not provided, package templates will be used. \item template2 a character string providing the "specific" model template, e.g, global_cf.ins or global_cru.ins. It must be in the mainDir. Provide only the file name, not the path. If not provided, package templates will be - used + used. \item plot.data a boolean indicating whether the ouput data will be plotted (default FALSE) \item save.plots a boolean indicating whether the plots will be saved (default FALSE) \item processing a boolean indicating whether output files will be turned into zoo time series (default FALSE). This is only supported when running the model - for one grid cell. For several grid cells, please set processing to FALSE + for one grid cell. For several grid cells, please set processing to FALSE. \item parallel a character string providing the parallel strategy. If grids, it will parallelize grids. If parameters, it will parallelize parameters. If both, it will parallelize both grids and parameters. If auto, it will decided the strategy based on the provided parameterList and gridList. Default value is auto \item delete a boolean indicating whether output files should be deleted after - processing (default TRUE). Saved plots will not be deleted + processing (default TRUE). Saved plots will not be deleted. \item save a boolean indicating whether function outputs should be saved as RData -into an output directory named (runInfoDir_DATE). Default is TRUE +into an output directory named (runInfoDir_DATE). Default is TRUE. \item runID an integer after which the output directory will be named (default empty). -If parallel TRUE, ID is ignored and defined by setupLPJParallel -\item design a named list containing the general parameters for LPJ-GUESS. Seefunction \code{\link{getDesign}} -for default values and examples +If parallel TRUE, ID is ignored and defined by setupLPJParallel. +\item design a named list containing the general parameters for LPJ-GUESS. +See function \code{\link{getDesign}} for default values and examples. }} \item{typeList}{a character vector with the outputs to be analyzed. -Default value is all outputs} +Default value is all outputs.} \item{parameterList}{either a named list containing the parameters to be calibrated or a matrix. If running in parallel, parameter list should be either a list of of list or a matrix where each row is a parameter combination and the column names should be named -after the parameters.} +after the parameters. See fucntion \code{\link{getParameterList}}) for default values.} } \value{ -an object of class LPJData. The LPJData object will be automatically stored as RData -in a folder in the mainDir. The folder will be named as runInfo plus the date in format %Y_%m_%d_%H%M%S. +an object of class \linkS4class{LPJData} The \linkS4class{LPJData} object + will be automatically stored as RData in a folder in the mainDir. The folder + will be named as runInfo plus the date in format %Y_%m_%d_%H%M%S. } \description{ -This function allows to run LPJ-GUESS the model serial -or parallel and returns the model outputs as an R object, which is also stored -as RData. +This function allows to run the LPJ-GUESS model serial +or parallel. It returns the model outputs as a \linkS4class{LPJData} object, + which can also be stored as RData. } \details{ The runLPJ in parallel assumes the existence of a folder the model templates - for LPJ-GUESS (optional) and link to the model executable. + for LPJ-GUESS (optional) and link to the model executable: mainDir. Running the LPJ-GUESS in parallel involves two steps. First, to create a parallel setup (\code{\link{setupLPJParallel}}), and second, to actually run the model (\code{\link{runLPJ}}). The parallelization requires the package \emph{snow} for SOCK clusters or the package \emph{Rmpi} for MPI clusters. } -\section{Warning}{ - When using MPI clusters, please call the function \code{\link{exitMPI}} -before terminating your R session. -} - \section{Model templates}{ - The provided templates can be either the ones provided by the package or -a self edited templates. The function assumes a specific coding for writing the -parameters values. For this reason, we recommend to use the package templates. -If using self edited templates, please take the package templates as a reference (\code{\link{getTemplate}}) + +It is not mandatory to provide the model templates. The package contais model templates +(see \code{\link{getTemplate}}) and will write them with the specified information + (input files, design, parameters). +If you decided to provide templates to \code{\link{runLPJ}}, you can either use + the package ones or a self edited templates. The package assumes a specific + coding for writing the parameters values, design options and input files paths. + For this reason, we recommend to use the package templates. +Yet, if you want to use self edited templates, please take the package templates + as a reference (see \code{\link{getTemplate}}). } +\section{Warning}{ + +When using MPI clusters, please call the function \code{\link{exitMPI}} +before terminating your R session. +} \examples{ \dontrun{ +### Settings and options ### + +# main directory +mainDir <- "/some/absolute/path/mainDir" +list.files(mainDir) + [1] "guess" or "guesscmd.exe" # link to the model executable + [2] "gridlist.txt" # list of gridcells + [3] "global.ins" # template1 (optional) + [4] "global_cru.ins" # template2 (optional) +# Input files file.co2<-"/some/absolute/path/crudata/co2_1901-2013.txt" file.cru <- "/some/absolute/path/crudata/cru_1901_2006.bin" file.cru.misc <- "/some/absolute/path/crudata/cru_1901_2006misc.bin" @@ -125,37 +142,43 @@ file.temp <- "/some/absolute/path/cfdata/temp.nc" file.prec <- "/some/absolute/path/cfdata/prec.nc" file.insol <- "/some/absolute/path/cfdata/rad.nc" -mainDir <- "/some/absolute/path/mainDir" -list.files(mainDir) -[1] "guess" or "guesscmd.exe" # link to the model executable -[2] "gridlist.txt" # list of gridcells -[3] "global.ins" # template1 (optional) -[4] "global_cru.ins" # template2 (optional) - # General settings settings <- list (gridList = gridList,mode = "cf", scale = "global", - file.co2 = file.co2, file.cru = file.cru, - file.cru.misc = file.cru.misc, file.ndep = file.ndep, - file.temp = file.temp, file.prec = file.prec, - file.insol = file.insol, delete = F) - - -# Single Run - result <- runLPJ(mainDir, settings= settings) - result - class : LPJData - LPJ template 1 : global.ins - LPJ template 2 : global_cf.ins - grid cells : 99 Somewhere - run directory : /some/absolute/path/mainDir/runDirectory - LPJ model outputs : 39 outputs - aaet agpp aiso amon anpp cflux clitter cmass cpool cton_leaf dens - firert fpc speciesheight lai maet mevap mgpp mintercep miso mlai mmon - mnee mnpp mpet mra mrh mrunoff mwcont_lower mwcont_upper nflux ngases - nlitter nmass npool nsources nuptake runoff vmaxnlim - - -# Parallel Run + file.co2 = file.co2, file.cru = file.cru, + file.cru.misc = file.cru.misc, file.ndep = file.ndep, + file.temp = file.temp, file.prec = file.prec, + file.insol = file.insol, delete = FALSE) + +# (Optional) Modify design + # Obtain the standard design +designLPJ <- getDesign(scaleLPJ, list = TRUE) + + # Modify the desired options +designLPJ$run_vegmode <- "cohort" +designLPJ$run_ifcentury <- 0 +designLPJ$run_iffire <- 0 +designLPJ$run_ifnlim <- 0 + + # Add to settings +settings$design <- designLPJ + +### Single Run ### +result <- runLPJ(x=mainDir, settings=settings) +result + class : LPJData + LPJ template 1 : global.ins + LPJ template 2 : global_cf.ins + grid cells : 99 Somewhere + run directory : /some/absolute/path/mainDir/runDirectory + LPJ model outputs : 39 outputs + aaet agpp aiso amon anpp cflux clitter cmass cpool cton_leaf dens + firert fpc speciesheight lai maet mevap mgpp mintercep miso mlai mmon + mnee mnpp mpet mra mrh mrunoff mwcont_lower mwcont_upper nflux ngases + nlitter nmass npool nsources nuptake runoff vmaxnlim + + +### Parallel Run ### + # Create some paramaters to test the model. # Number of runs is proportional to number of parameter being testet parameterDefault <- list (run_emax = NULL) @@ -165,35 +188,35 @@ par <- seq(1,5, len = 6) # Create the list object with the parameters parameterList <- vector("list", length(par)) for (i in 1:length(par)) { - parameterDefault$run_emax <- par[i] - parameterList[[i]] <- parameterDefault - } + parameterDefault$run_emax <- par[i] + parameterList[[i]] <- parameterDefault +} # Call setupParallel -mySetup <- setupLPJParallel(3, "SOCK", "cf", - mainDir = "/some/absolute/path/mainDir") +mySetup <- setupLPJParallel(numCores=3, clusterType="SOCK", mainDir=mainDir) # Call runLPJ -result <- runLPJ(mySetup, settings= settings, parameterList = parameterList) +result <- runLPJ(x=mySetup, settings=settings, parameterList=parameterList) str(result,1) - List of 6 - $ :Formal class 'LPJData' [package "rLPJGUESS"] with 2 slots - $ :Formal class 'LPJData' [package "rLPJGUESS"] with 2 slots - $ :Formal class 'LPJData' [package "rLPJGUESS"] with 2 slots - $ :Formal class 'LPJData' [package "rLPJGUESS"] with 2 slots - $ :Formal class 'LPJData' [package "rLPJGUESS"] with 2 slots - $ :Formal class 'LPJData' [package "rLPJGUESS"] with 2 slots + List of 6 + $ :Formal class 'LPJData' [package "rLPJGUESS"] with 2 slots + $ :Formal class 'LPJData' [package "rLPJGUESS"] with 2 slots + $ :Formal class 'LPJData' [package "rLPJGUESS"] with 2 slots + $ :Formal class 'LPJData' [package "rLPJGUESS"] with 2 slots + $ :Formal class 'LPJData' [package "rLPJGUESS"] with 2 slots + $ :Formal class 'LPJData' [package "rLPJGUESS"] with 2 slots - } +} +} +\author{ +Ramiro Silveyra Gonzalez, Maurizio Bagnara, Florian Hartig } \seealso{ \url{https://cran.r-project.org/web/packages/Rmpi/Rmpi.pdf}, \url{https://cran.r-project.org/web/packages/snow/snow.pdf}, \code{\link{setupLPJParallel}}, \code{\link{exitMPI}}, \linkS4class{LPJData}, - \linkS4class{LPJSetup} -} -\author{ -Ramiro Silveyra Gonzalez, Maurizio Bagnara, Florian Hartig + \linkS4class{LPJSetup}, \code{\link{getParameterList}}, \code{\link{getDesign}} } \keyword{rLPJGUESS} + diff --git a/rLPJGUESS/man/setupLPJParallel.Rd b/rLPJGUESS/man/setupLPJParallel.Rd index 2688686..d9ac2e0 100644 --- a/rLPJGUESS/man/setupLPJParallel.Rd +++ b/rLPJGUESS/man/setupLPJParallel.Rd @@ -18,7 +18,7 @@ the template and the model link are located, and in which the function will crea the directory structure for the outputs} } \value{ -an LPJSetup object +an \linkS4class{LPJSetup} object } \description{ This function first creates a setup for running the LPJ-GUESS in parallel @@ -26,31 +26,58 @@ This function first creates a setup for running the LPJ-GUESS in parallel configuration. A folder (mainDir) containing the model templates for LPJ-GUESS (optional) and link to the model executable. } +\details{ +Please note that the requested number of cores should not be larger +than the number of aimed model runs. +} \examples{ \dontrun{ -mainDir <- "/some/absolute/path/mainDir" -list.files(mainDir) -[1] "guess" or "guesscmd.exe" # link to the model executable -[2] "gridlist.txt" # list of gridcells -[3] "global.ins" # template1 (optional) -[4] "global_cru.ins" # template2 (optional) +# 20 different parameters or parameters conbinations to test + # as a matrix +parameterList <- as.matrix(seq(1,5, len = 20)) +colnames(parameterList) <- "common_emax" + # as a list +dummy <- list (common_emax = NULL) +par <- seq(1,5, len = 20) +parameterList <- vector("list", length(par)) +for (i in 1:length(par)) { + dummy$common_emax <- par[i] + parameterList[[i]] <- dummy +} + +# Create a parallel setup for MPI cluster +# Number of cores must be equal or larger than the parameter combinations +mySetup <- setupLPJParallel(numCores= 20, clusterType = "MPI", mainDir=mainDir) + +# Create a parallel setup for SOCK cluster +# Number of cores must be equal or larger than the parameter combinations mySetup <- setupLPJParallel(numCores= 3, clusterType = "SOCK", mainDir=mainDir) -mySetup - class : LPJSetup - cluster type : SOCK - number of cores : 3 - output directories : - /some/absolute/path/mainDir/runDirectory1 - /some/absolute/path/mainDir/runDirectory2 - /some/absolute/path/mainDir/runDirectory3 -} + +# Run LPJ-GUESS in parallel +result <- runLPJ(x = mySetup, settings= settings, parameterList = parameterList ) + +# After running runLPJ (20 simulations) +str(result,1) + + List of 20 + + $ :Formal class 'LPJData' [package "rLPJGUESS"] with 2 slots + + $ :Formal class 'LPJData' [package "rLPJGUESS"] with 2 slots + + [...] + + + } -\seealso{ -\url{https://cran.r-project.org/web/packages/Rmpi/Rmpi.pdf}, - \url{https://cran.r-project.org/web/packages/snow/snow.pdf} } \author{ Ramiro Silveyra Gonzalez, Maurizio Bagnara, Florian Hartig } +\seealso{ +\code{\link{runLPJ}}, \linkS4class{LPJSetup}, \url{https://cran.r-project.org/web/packages/Rmpi/Rmpi.pdf}, + \url{https://cran.r-project.org/web/packages/snow/snow.pdf} +} \keyword{rLPJGUESS} + diff --git a/rLPJGUESS/man/writeTemplate.Rd b/rLPJGUESS/man/writeTemplate.Rd index a4ad50e..8db5062 100644 --- a/rLPJGUESS/man/writeTemplate.Rd +++ b/rLPJGUESS/man/writeTemplate.Rd @@ -27,7 +27,9 @@ set them to the default values. The function assumes that a copy of the template is already placed in the run directory. } \details{ -If check is serial, it will return the complete and checked parameterList. +Please note that this function is integrated in \code{\link{runLPJ}}. + +Check: If check is serial, it will return the complete and checked parameterList. If parallel, it would only check the provided parameters. Please only use serial, other options are handled internally in the parallelization. } @@ -40,17 +42,21 @@ a self edited template. The function assumes a specific coding for writing the parameters values. For this reason, we recommend to use the package templates. If using self edited templates, please take the package templates as a reference. } - \examples{ \dontrun{ -writeTemplate("global.ins", list(run_lamda_max = 0.5, run_emax= 5), - "/home/lpjRun/runDirectory1") -} +# Define the parametes to be written +parameterList <- list(run_lamda_max = 0.5, run_emax= 5) + +# write the template +writeTemplate(template1 = "global.ins", parameterList = parameterList, + runDir = "/some/absolute/path/mainDir/runDirectory", check = "serial") } -\seealso{ -\code{\link{getTemplate}}, \code{\link{getParameterList}} } \author{ Ramiro Silveyra Gonzalez, Maurizio Bagnara, Florian Hartig, } +\seealso{ +\code{\link{getTemplate}}, \code{\link{getParameterList}} +} \keyword{rLPJGUESS} + diff --git a/rLPJGUESS/tests/testthat/test-LPJData.R b/rLPJGUESS/tests/testthat/test-LPJData.R new file mode 100644 index 0000000..16b8fb8 --- /dev/null +++ b/rLPJGUESS/tests/testthat/test-LPJData.R @@ -0,0 +1,34 @@ +testthat::context("Test basic") +set.seed(1) +library(rLPJGUESS) + + +testthat::test_that("test LPJdata", { + + data <- "../LPJ-Example/runDirectory/outDirectory" + selectedTypes <- c("cmass", "lai") + # dummy runInfo + runInfo <- list(parameter1 = 0.5, grid = 1) + + LPJout <- getLPJData(data, typeList = selectedTypes, + runInfo = runInfo) + # it retursn LPJData object + testthat::expect_true(class(LPJout) == "LPJData") + # it retuns only the selected outputs + outputTypes <- names(LPJout["dataTypes"]) + testthat::expect_true(identical(selectedTypes, outputTypes)) + # runInfo is what we asked for + desiredInfo <- names(runInfo) + availableInfo <- names(LPJout["runInfo"]) + testthat::expect_true(identical(desiredInfo, availableInfo)) + + # Data can be plotted + plotLPJData(LPJout, typeList = c("cmass", "lai")) +}) + + + + + + + diff --git a/rLPJGUESS/tests/testthat/test-runLPJ-outputTypes.R b/rLPJGUESS/tests/testthat/test-runLPJ-outputTypes.R deleted file mode 100644 index 0223a34..0000000 --- a/rLPJGUESS/tests/testthat/test-runLPJ-outputTypes.R +++ /dev/null @@ -1,56 +0,0 @@ -testthat::context("Test basic") -set.seed(1) -library(rLPJGUESS) - -testthat::test_that("basic run", { - - file.co2<-"/some/absolute/path/crudata/co2_1901-2013.txt" - file.cru <- "/some/absolute/path/crudata/cru_1901_2006.bin" - file.cru.misc <- "/some/absolute/path/crudata/cru_1901_2006misc.bin" - file.ndep <- "/some/absolute/path/crudata/GlobalNitrogenDeposition.bin" - file.temp <- "/some/absolute/path/cfdata/temp.nc" - file.prec <- "/some/absolute/path/cfdata/prec.nc" - file.insol <- "/some/absolute/path/cfdata/rad.nc" - - mainDir <- "../LPJ-Example" - list.files(mainDir) - - settings <- list (gridList = NA ,mode = "cf", scale = "global", - file.co2 = file.co2, file.cru = file.cru, - file.cru.misc = file.cru.misc, file.ndep = file.ndep, - file.temp = file.temp, file.prec = file.prec, - file.insol = file.insol, delete = F) - - # result <- runLPJ(mainDir, settings= settings) - -}) - - -testthat::test_that("data test", { - - data <- "../LPJ-Example/runDirectory/outDirectory" - - LPJout <- getLPJData(typeList = c("cmass", "lai"), - data, runInfo = list(parameter1 = 0.5, grid = 1)) - plotLPJData(LPJout, typeList = c("cmass", "lai")) -}) - - - -# getTemplate To obtain the in-package stored model templates -# -# getParameterList To obtain the parameter default values -# -# getDesign To obtain the default desgin -# -# getTypeList To obtain the default output model types -# -# getRunInfo To recover data or parameters from the runInfoDir -# -# -# -# writeTemplate To write LPJ-GUESS templates - - - - diff --git a/rLPJGUESS/tests/testthat/test-setupLPJParallel.R b/rLPJGUESS/tests/testthat/test-setupLPJParallel.R index e975e3f..dac85de 100644 --- a/rLPJGUESS/tests/testthat/test-setupLPJParallel.R +++ b/rLPJGUESS/tests/testthat/test-setupLPJParallel.R @@ -20,11 +20,11 @@ checkSetupObject <- function(setupObject, numCores, mainDir, clusterType){ -testthat::test_that("setupLPJParallel attributes", { +testthat::test_that("setupLPJParallel attributes are correct", { numCores <- 3 clusterType <- "SOCK" - mainDir <- mainDir <- "../LPJ-Example" + mainDir <- "../LPJ-Example" list.files(mainDir) setupObject <- setupLPJParallel(numCores, clusterType, mainDir) @@ -65,7 +65,7 @@ testthat::test_that("setupLPJParallel creates directories and stores them", { numCores <- 3 clusterType <- "SOCK" - mainDir <- mainDir <- "../LPJ-Example" + mainDir <- "../LPJ-Example" list.files(mainDir) setupObject <- setupLPJParallel(numCores, clusterType, mainDir) diff --git a/rLPJGUESS/tests/testthat/test-writeTemplate.R b/rLPJGUESS/tests/testthat/test-writeTemplate.R new file mode 100644 index 0000000..a19790a --- /dev/null +++ b/rLPJGUESS/tests/testthat/test-writeTemplate.R @@ -0,0 +1,32 @@ +context("Test basic") +set.seed(1) +library(rLPJGUESS) + + +testthat::test_that("writeTemplate writes the desired value", { + + scale <- "global" + parameter <- list() + parameter$common_emax <- 1 + # Is different from default value + testthat::expect_false(parameter$common_emax==getParameterList(scale, list = TRUE)$common_emax) + # put the template in the folder + mainDir <- "../LPJ-Example" + getTemplate(scale, mainDir) + template <- readLines(file.path(mainDir, paste(scale, ".ins", sep=""))) + # Find the value in the template + beforeParameter <- template[grepl("emax", template)] + # write the template with the desired value + writeTemplate(file.path(mainDir, paste(scale, ".ins", sep="")), parameter, mainDir, check = "serial") + templateAfter <- readLines(file.path(mainDir, paste(scale, ".ins", sep=""))) + # Find the value in the template + afterParameter <- templateAfter[grepl("emax", templateAfter)] + # values should be different + testthat::expect_false(identical(beforeParameter, afterParameter)) + # desired value should be present + testthat::expect_true(grepl(parameter$common_emax, afterParameter)) + # delete template from the folder + unlink(file.path(mainDir, paste(scale, ".ins", sep=""))) + + +}) diff --git a/rLPJGUESS/vignettes/rLPJGUESS.R b/rLPJGUESS/vignettes/rLPJGUESS.R new file mode 100644 index 0000000..c53ae56 --- /dev/null +++ b/rLPJGUESS/vignettes/rLPJGUESS.R @@ -0,0 +1,135 @@ +## ------------------------------------------------------------------------ +rm(list=ls()) +library(rLPJGUESS) + +## ------------------------------------------------------------------------ +mainDir <- system.file("extdata", package = "rLPJGUESS") +list.files(mainDir) + +## ---- fig.show='hold'---------------------------------------------------- +file_co2 <-"/some/absolute/path/crudata/co2_1901-2006.txt" +file_cru <- "/some/absolute/path/crudata/cru_1901_2006.bin" +file_cru_misc <- "/some/absolute/path/crudata/cru_1901_2006misc.bin" +file_ndep <- "/some/absolute/path/crudata/GlobalNitrogenDeposition.bin" + +## ---- fig.show='hold'---------------------------------------------------- +file_temp <- "/some/absolute/path/cfdata/temp.nc" +file_prec <- "/some/absolute/path/cfdata/prec.nc" +file_insol <- "/some/absolute/path/cfdata/rad.nc" + +## ---- fig.show='hold'---------------------------------------------------- +gridList <- "gridlist.txt" + +## ---- fig.show='hold'---------------------------------------------------- +settings <- list (gridList = gridList,mode = "cf", scale = "global", + file.co2 = file_co2, file.cru = file_cru, file.cru.misc = file_cru_misc, + file.ndep = file_ndep, file.temp = file_temp, file.prec = file_prec, + file_insol = file_insol) + +## ---- eval=F------------------------------------------------------------- +# result <- runLPJ(mainDir, settings= settings) + +## ------------------------------------------------------------------------ +options(error=traceback) +mySetup <- setupLPJParallel(numCores= 3, clusterType = "SOCK", mainDir=mainDir) +mySetup + +## ------------------------------------------------------------------------ +list.files(mainDir) + +## ------------------------------------------------------------------------ +runDir <- file.path(mainDir, "runDirectory1") +list.files(runDir) + +## ------------------------------------------------------------------------ +parameterDefault <- getParameterList("europe", list = F) +parameterDefault[40:50,] + +## ------------------------------------------------------------------------ +parameterDefault <- getParameterList("europe", list = T) + +## ------------------------------------------------------------------------ +parameterDefault$common_emax + +## ------------------------------------------------------------------------ +parameterList <- as.matrix(seq(1,5, len = 20)) +colnames(parameterList) <- "common_emax" +head(parameterList) + +## ------------------------------------------------------------------------ +dummy <- list (common_emax = NULL) +par <- seq(1,5, len = 20) +parameterList <- vector("list", length(par)) +for (i in 1:length(par)) { + dummy$common_emax <- par[i] + parameterList[[i]] <- dummy +} +print(parameterList[2:3]) + +## ------------------------------------------------------------------------ +typeList <- c("aaet", "nuptake") + +## ---- eval=F------------------------------------------------------------- +# result <- runLPJ(mySetup, settings= settings, parameterList = parameterList ) + +## ------------------------------------------------------------------------ +runDir <- file.path(mainDir, "runDirectory1") +list.files(runDir) + +## ------------------------------------------------------------------------ +parameters <- parameterList[[1]] +parameters + +## ------------------------------------------------------------------------ +template <- getTemplate("europe", runDir) +list.files(runDir) +template <- readLines(file.path(runDir, "europe.ins")) +template [c(156:166)] + +## ------------------------------------------------------------------------ +writeTemplate(template1 = "europe.ins", parameterList = parameters, runDir = runDir) + +## ------------------------------------------------------------------------ +template <- readLines(file.path(runDir, "europe.ins")) +template [c(156:166)] + +## ---- eval=F------------------------------------------------------------- +# callLPJ(mainDir, runDir, template, mode) + +## ------------------------------------------------------------------------ +outDir <- system.file("extdata/exampleOutputs", package = "rLPJGUESS") +list.files(outDir) + +## ------------------------------------------------------------------------ +typeList <- c("aaet","lai") + +## ------------------------------------------------------------------------ +LPJout <- getLPJData(x = outDir,typeList = typeList, runInfo=list(runNumber = 1, template1 = "europe.ins", template2="europe_cf.ins", runDir = "runDirectory1")) +LPJout + +## ------------------------------------------------------------------------ +slotNames(LPJout) + +## ------------------------------------------------------------------------ +names(LPJout["runInfo"]) + +## ------------------------------------------------------------------------ +names(LPJout["dataTypes"]) +summary(LPJout["lai"]) + +## ---- eval=F------------------------------------------------------------- +# LPJout["runDir"] + +## ------------------------------------------------------------------------ +summary(LPJout["lai"]) + +## ----fig.show= "hold", fig.keep ='all', fig.width=7, fig.heigth=16------ +plotLPJData(x = LPJout, typeList = "lai" , outDir = outDir, save.plots = FALSE) + +## ---- echo=FALSE--------------------------------------------------------- +files <- list.files(mainDir) +files <- files[!grepl("grid", files)] +files <- files[!grepl("example", files)] +files <- files[!grepl("LPJParameters_calibrate", files)] +unlink(file.path(mainDir, files), recursive = TRUE) + diff --git a/rLPJGUESS/vignettes/rLPJGUESS.html b/rLPJGUESS/vignettes/rLPJGUESS.html new file mode 100644 index 0000000..854d68f --- /dev/null +++ b/rLPJGUESS/vignettes/rLPJGUESS.html @@ -0,0 +1,449 @@ + + + + + + + + + + + + + + + + +rLPJGUESS Package + + + + + + + + + + + + + + + + + +

rLPJGUESS Package

+

Ramiro Silveyra Gonzalez, Maurizio Bagnara, Florian Hartig

+

2018-06-29

+ + + +

The rLPJGUESS package is thought to ease the parallelization of the LPJ-GUESS 3.1 in High Computer Performance Environments (HPC). The package is a collection of tools that will allow you to create a parallel setup and run in parallel not only the LPJ-GUESS 3.1 model, but also the processing of the model outputs. The package can be also used for parallel runs on personal computers.

+

In this document you will learn how to prepare a parallel setup and how to use the different functions of rLPJGUESS. The code is open to further improvements and modifications, feel free to adapt it to your needs.

+
+

Overview

+
+

General aspects

+

The rLPJGUESS package will help you to run LPJ-GUESS 3.1 in parallel, but first you will have to prepare your data, so that you can make use the of the package utilities. Specifically, rLPJGUESS requires that i) you have already compiled the LPJ-GUESS 3.1 model in your computer or home folder in the HPC, and that ii) the existence of a directory where the outputs of the model will be saved, a sort of main directory.

+

In the main directory (mainDir), the following files must be available:

+ +

with a structure like this:

+

$ cd ./mainDir

+

$ ls

+
      guess / guesscmd.exe   # link to the model executable (not for Windows)
+      gridlist.txt           # list of grid cells
+      global.ins             # model template  (optional)
+      global_cru.ins         # model template  (optional)
+

or global_cf.ins # model template (optional)

+

The model templates are included within the package as part of the system data. They have been edited with some reference values, but you might want to change then. The function getTemplate allows to obtain templates from the package. To learn more about how to writing parameters in the template, check out the writeParameters function and the getParameterList.

+
+
+

Running LPJ-GUESS in parallel

+

Running the LPJ-GUESS parallel involves two steps. First, to create a parallel setup (setupParallel), and second, to actually run the model (runLPJ) in parallel. The parallelization requires the package snow for SOCK cluster and for MPI cluster, the Rmpi package.

+

The setupParallel function will help you at creating a directory structure for storing your model outputs and arranging the model templates for each run. Calling the setupParallel returns a list object that contains all information needed to run the LPJ-GUESS in parallel.

+

The runLPJ function reads the setup parallel object and creates a cluster to it which submits the model call with its respective parameters.

+
+
+
+

An Example of using rLPJGUESS

+

Here you will see an example of how to use the rLPJGUESS package. We will not run the LPJ-GUESS itself because the model is not included in the package. However, we will make use of almost all package functions.

+
+

First steps

+

Lets choose a main directory (mainDir) and have a look at it. Remember that the mainDir should contain a link to your guess executable and file with list of grid cells.

+
    +
  1. Clear the local environment and load the library
    2. +
+
rm(list=ls())
+library(rLPJGUESS)
+
    +
  1. Set the mainDir. In this case, it is within the package.
    2. +
+
mainDir <- system.file("extdata", package = "rLPJGUESS")
+list.files(mainDir)
+
## [1] "LPJParameters_calibrate.csv" "exampleOutputs"             
+## [3] "gridlist.txt"                "outputsForTests"
+
    +
  1. Now specicify the paths to the input data. They must be absolute paths.
    2. +
+
file_co2 <-"/some/absolute/path/crudata/co2_1901-2006.txt"
+file_cru <- "/some/absolute/path/crudata/cru_1901_2006.bin"
+file_cru_misc <- "/some/absolute/path/crudata/cru_1901_2006misc.bin"
+file_ndep <- "/some/absolute/path/crudata/GlobalNitrogenDeposition.bin"
+

Note: If running the cf mode, the following files must be specified as well.

+
file_temp <- "/some/absolute/path/cfdata/temp.nc"
+file_prec <- "/some/absolute/path/cfdata/prec.nc"
+file_insol <- "/some/absolute/path/cfdata/rad.nc"
+
    +
  1. Specify the file contain the grids for the model run. This file should be placed in mainDir.
    2. +
+
gridList <- "gridlist.txt"
+
    +
  1. Set options for runLPJ.
    2. +
+
settings <- list (gridList = gridList,mode = "cf", scale = "global",
+                  file.co2 = file_co2, file.cru = file_cru, file.cru.misc = file_cru_misc,
+                  file.ndep = file_ndep, file.temp = file_temp, file.prec = file_prec,
+                  file_insol = file_insol)
+
+
+

A serial run

+

After the steps above, we are ready to call runLPJ. LPJ-GUESS is, however, not part of this package, and thus, we will skip runLPJ here. Anyway, we should procceed as follows

+
result <-   runLPJ(mainDir,  settings= settings)
+

The above call will run the model wiht the default values for global_cf template. We can specify other values for the model parameters and also choose what model output we want to create. In the next section, we will do so for parallel runs of runLPJ.

+

The output is a LPJData object holding the information on the model run and the data outputs.

+
result
+
+  class              : LPJData
+  run directory      : /some/absolute/paht/runDirectory
+  LPJ template 1     : global.ins
+  LPJ template 2     : global_cf.ins
+  grid cells         : 1 cell(s)
+  0  Somewhere
+  LPJ model outputs  : 39 output(s)
+  aaet agpp aiso amon anpp cflux clitter cmass cpool cton_leaf dens      
+  firert fpc speciesheight lai maet mevap mgpp mintercep miso mlai mmon
+  mnee mnpp mpet mra mrh mrunoff mwcont_lower mwcont_upper nflux ngases
+  nlitter nmass npool nsources nuptake runoff vmaxnlim
+
+
+

A parallel run

+

Because we are running this on a personal laptop, we will choose a low number cores and create a SOCK cluster. In a HPC enviroment, you can go for MPI clusters.

+

By calling the function setupParallel we will create a parallel setup for runLPJ.

+
options(error=traceback)
+mySetup <- setupLPJParallel(numCores= 3, clusterType = "SOCK", mainDir=mainDir)
+mySetup
+
## class              : LPJSetup
+## cluster type       : SOCK
+## number of cores    : 3
+## output directories : 
+## /home/ramiro/Github/rLPJGUESS/rLPJGUESS/inst/extdata/runDirectory1
+## /home/ramiro/Github/rLPJGUESS/rLPJGUESS/inst/extdata/runDirectory2
+## /home/ramiro/Github/rLPJGUESS/rLPJGUESS/inst/extdata/runDirectory3
+

If we check the mainDir, we see that there are new folders.

+
list.files(mainDir)
+
## [1] "LPJParameters_calibrate.csv" "exampleOutputs"             
+## [3] "gridlist.txt"                "outputsForTests"            
+## [5] "runDirectory1"               "runDirectory2"              
+## [7] "runDirectory3"
+

Within the the runDir folders, there is also a outDir folder to temporary store the model outputs.

+
runDir <- file.path(mainDir, "runDirectory1")
+list.files(runDir)
+
## [1] "outDirectory1"
+

Now we can define the model outputs and the parameters to be tested. In this example, we will test several values for emax for europe. To see what are the default values for europe, we can use the getParameterList function.

+
parameterDefault <- getParameterList("europe", list = F)
+parameterDefault[40:50,]
+
##       shrub_cton_sap      shrub_nuptoroot      shrub_km_volume 
+##            3.300e+02            2.800e-03            1.477e-06 
+##      shrub_fnstorage      shrub_kest_repr        shrub_kest_bg 
+##            3.000e-01            2.000e+02            1.000e-01 
+##      shrub_kest_pres       shrub_litterme      shrub_longevity 
+##            1.000e+00            3.000e-01            1.000e+02 
+## needlelleaf_k_allom1 needlelleaf_k_latosa 
+##            1.500e+02            4.000e+03
+

We can also access the paramater as a list (list= T), instead of a matrix (list = F).

+
parameterDefault <- getParameterList("europe", list = T)
+

Let’s check the default value for emax.

+
parameterDefault$common_emax
+
## [1] 5
+

We can create some test values for emax. As for getParameterList, the values can be arranged in a matrix

+
parameterList <- as.matrix(seq(1,5, len = 20))
+colnames(parameterList) <- "common_emax"
+head(parameterList)
+
##      common_emax
+## [1,]    1.000000
+## [2,]    1.210526
+## [3,]    1.421053
+## [4,]    1.631579
+## [5,]    1.842105
+## [6,]    2.052632
+

or in a list.

+
dummy <- list (common_emax = NULL)
+par <- seq(1,5, len = 20)
+parameterList <- vector("list", length(par))
+for (i in 1:length(par)) {
+  dummy$common_emax <- par[i]
+  parameterList[[i]] <- dummy
+}
+print(parameterList[2:3])
+
## [[1]]
+## [[1]]$common_emax
+## [1] 1.210526
+## 
+## 
+## [[2]]
+## [[2]]$common_emax
+## [1] 1.421053
+

Once the parameters are defined, we can specify which outputs we are interested in.

+
typeList <- c("aaet", "nuptake")
+

Now we are ready to call the runLPJ . Because LPJ-GUESS is not part of this package, we will skip this step. The call to runLPJ would look like the one below.

+
result <-   runLPJ(mySetup,  settings= settings, parameterList = parameterList )
+

runLPJ would return something like this:

+
Output typeList has not been provided
+
+Setting typeList to default values
+
+
+Using package template (template 1)
+
+Saving package template in the mainDir
+
+
+Using package template (template 2)
+
+Saving package template in the mainDir
+
+
+Checking conditions
+
+Reading the parallel object structure
+
+|==============================================================| 100%
+
+Creating a SOCK cluster with 3 cores
+
+Sending tasks to the cores
+
+
+Processing ended!
+

The output of runLPJ is a list with as many objects as parameter values we wanted to test. In this case 20 parameter values.

+
str(result,1)
+
+List of 20
+
+$ :Formal class 'LPJData' [package "rLPJGUESS"] with 2 slots
+
+$ :Formal class 'LPJData' [package "rLPJGUESS"] with 2 slots
+
+$ :Formal class 'LPJData' [package "rLPJGUESS"] with 2 slots
+
+$ :Formal class 'LPJData' [package "rLPJGUESS"] with 2 slots
+
+$ :Formal class 'LPJData' [package "rLPJGUESS"] with 2 slots
+
+$ :Formal class 'LPJData' [package "rLPJGUESS"] with 2 slots
+
+[...]
+
+
+
+

How rLPJGUESS works

+

Here you will see how a single run takes place. The runLPJ does some preliminary taks such as organizing input data into the runDirs. If parallel, it creates the desired cluster. In both cases, runLPJ calls a internal wrapper (runLPJwrapper) which agglutinates all single steps to carry one complete call to LPJ-GUESS. Here we will run the steps that take in place in a single run.

+
    +
  1. Lets move one of the run directories.
    2. +
+
runDir <- file.path(mainDir, "runDirectory1")
+list.files(runDir)
+
## [1] "outDirectory1"
+
    +
  1. The frst step is to write the parameters. We will selected only one of the parameters created above.
    2. +
+
parameters <- parameterList[[1]] 
+parameters
+
## $common_emax
+## [1] 1
+

We can read the template to check how it looks like. In concrete, the parameters we want to change.

+
template <- getTemplate("europe", runDir)
+list.files(runDir)
+
## [1] "europe.ins"    "outDirectory1"
+
template <- readLines(file.path(runDir, "europe.ins"))
+template [c(156:166)]
+
##  [1] "!// Run GUESS with -help option for list of keywords and their meanings"
+##  [2] ""                                                                       
+##  [3] "group \"common\" ("                                                     
+##  [4] ""                                                                       
+##  [5] "\t! Parameters common to all PFTs"                                      
+##  [6] ""                                                                       
+##  [7] "\tlambda_max \tcommon_lambda_max\t\t\t! 0.8"                            
+##  [8] "\temax \t\tcommon_emax\t\t\t! 5"                                        
+##  [9] "\treprfrac \tcommon_reprfrac\t\t\t! 0.1"                                
+## [10] "\twscal_min \tcommon_wscal_min\t\t\t! 0.35"                             
+## [11] "\tdrought_tolerance common_drought_tolerance \t! 0.0001"
+
    +
  1. Now we call the writeTemplate function and write the template.
    2. +
+
writeTemplate(template1 = "europe.ins", parameterList = parameters, runDir = runDir)
+

and check the changes. We should see that all parameter values but emax have been written with the default values.

+
template <- readLines(file.path(runDir, "europe.ins"))
+template [c(156:166)]
+
##  [1] "!// Run GUESS with -help option for list of keywords and their meanings"
+##  [2] ""                                                                       
+##  [3] "group \"common\" ("                                                     
+##  [4] ""                                                                       
+##  [5] "\t! Parameters common to all PFTs"                                      
+##  [6] ""                                                                       
+##  [7] "\tlambda_max \t0.8\t\t\t! 0.8"                                          
+##  [8] "\temax \t\t1\t\t\t! 5"                                                  
+##  [9] "\treprfrac \t0.1\t\t\t! 0.1"                                            
+## [10] "\twscal_min \t0.35\t\t\t! 0.35"                                         
+## [11] "\tdrought_tolerance 1e-04 \t! 0.0001"
+
    +
  1. Next step is to call the model. The function that internally calls LPJ-GUESS is callLPJ.
    2. +
+
callLPJ(mainDir, runDir, template, mode)
+

Assuming that we would have run the LPJ, we should see in the outDirectory the output files, as specified in the template. In this example, we do not run the LPJ and thus, we do not create any output data. But some output data examples are provided in the folder extdata/exampleOutputs. In the lines below, we will read the outputs, process and plot them.

+
    +
  1. Lets check the example output data.
    2. +
+
outDir <- system.file("extdata/exampleOutputs", package = "rLPJGUESS")
+list.files(outDir)
+
##  [1] "aaet.out"       "agpp.out"       "anpp.out"       "cflux.out"     
+##  [5] "clitter.out"    "cmass.out"      "cpool.out"      "cton_leaf.out" 
+##  [9] "dens.out"       "fpc.out"        "lai.out"        "nflux.out"     
+## [13] "ngases.out"     "nlitter.out"    "nmass.out"      "npool.out"     
+## [17] "nsources.out"   "nuptake.out"    "tot_runoff.out" "vmaxnlim.out"
+
    +
  1. If we were interested only in some of the outputs, lets say aaet and lai, we can do this:
    2. +
+
typeList <- c("aaet","lai")
+
    +
  1. Then we call the getLPJData function to obtain the processed data.
    2. +
+
LPJout <- getLPJData(x = outDir,typeList = typeList,  runInfo=list(runNumber = 1, template1 = "europe.ins", template2="europe_cf.ins", runDir = "runDirectory1"))
+LPJout
+
## class              : LPJData
+## run directory      : runDirectory1
+## LPJ template 1     : europe.ins
+## LPJ template 2     : europe_cf.ins
+## LPJ model outputs  : 2 output(s)
+## aaet, lai
+
    +
  1. The LPJData class has two slots.
    2. +
+
slotNames(LPJout)
+
## [1] "runInfo"   "dataTypes"
+

In runInfo we can find all information used to run the model,

+
names(LPJout["runInfo"])
+
## [1] "runNumber" "template1" "template2" "runDir"
+

while in dataTypes, the data.

+
names(LPJout["dataTypes"])
+
## [1] "aaet" "lai"
+
summary(LPJout["lai"])
+
##       Lon           Lat          Year           BNE         BINE  
+##  Min.   :8.5   Min.   :50   Min.   :1980   Min.   :0   Min.   :0  
+##  1st Qu.:8.5   1st Qu.:50   1st Qu.:1988   1st Qu.:0   1st Qu.:0  
+##  Median :8.5   Median :50   Median :1996   Median :0   Median :0  
+##  Mean   :8.5   Mean   :50   Mean   :1996   Mean   :0   Mean   :0  
+##  3rd Qu.:8.5   3rd Qu.:50   3rd Qu.:2004   3rd Qu.:0   3rd Qu.:0  
+##  Max.   :8.5   Max.   :50   Max.   :2012   Max.   :0   Max.   :0  
+##       BNS         TeBS             IBS         TeBE               TrBE  
+##  Min.   :0   Min.   :0.9494   Min.   :0   Min.   :0.000000   Min.   :0  
+##  1st Qu.:0   1st Qu.:1.0413   1st Qu.:0   1st Qu.:0.000000   1st Qu.:0  
+##  Median :0   Median :1.3159   Median :0   Median :0.000000   Median :0  
+##  Mean   :0   Mean   :1.2573   Mean   :0   Mean   :0.001155   Mean   :0  
+##  3rd Qu.:0   3rd Qu.:1.3965   3rd Qu.:0   3rd Qu.:0.000100   3rd Qu.:0  
+##  Max.   :0   Max.   :1.5490   Max.   :0   Max.   :0.011000   Max.   :0  
+##      TrIBE        TrBR        C3G               C4G        Total       
+##  Min.   :0   Min.   :0   Min.   :0.00000   Min.   :0   Min.   :0.9593  
+##  1st Qu.:0   1st Qu.:0   1st Qu.:0.00000   1st Qu.:0   1st Qu.:1.0427  
+##  Median :0   Median :0   Median :0.00140   Median :0   Median :1.3537  
+##  Mean   :0   Mean   :0   Mean   :0.01992   Mean   :0   Mean   :1.2784  
+##  3rd Qu.:0   3rd Qu.:0   3rd Qu.:0.04690   3rd Qu.:0   3rd Qu.:1.4031  
+##  Max.   :0   Max.   :0   Max.   :0.08850   Max.   :0   Max.   :1.6106
+

The LPJData class is subsettable. So we can type this

+
LPJout["runDir"]
+

or this to access the information/data stored.

+
summary(LPJout["lai"])
+
##       Lon           Lat          Year           BNE         BINE  
+##  Min.   :8.5   Min.   :50   Min.   :1980   Min.   :0   Min.   :0  
+##  1st Qu.:8.5   1st Qu.:50   1st Qu.:1988   1st Qu.:0   1st Qu.:0  
+##  Median :8.5   Median :50   Median :1996   Median :0   Median :0  
+##  Mean   :8.5   Mean   :50   Mean   :1996   Mean   :0   Mean   :0  
+##  3rd Qu.:8.5   3rd Qu.:50   3rd Qu.:2004   3rd Qu.:0   3rd Qu.:0  
+##  Max.   :8.5   Max.   :50   Max.   :2012   Max.   :0   Max.   :0  
+##       BNS         TeBS             IBS         TeBE               TrBE  
+##  Min.   :0   Min.   :0.9494   Min.   :0   Min.   :0.000000   Min.   :0  
+##  1st Qu.:0   1st Qu.:1.0413   1st Qu.:0   1st Qu.:0.000000   1st Qu.:0  
+##  Median :0   Median :1.3159   Median :0   Median :0.000000   Median :0  
+##  Mean   :0   Mean   :1.2573   Mean   :0   Mean   :0.001155   Mean   :0  
+##  3rd Qu.:0   3rd Qu.:1.3965   3rd Qu.:0   3rd Qu.:0.000100   3rd Qu.:0  
+##  Max.   :0   Max.   :1.5490   Max.   :0   Max.   :0.011000   Max.   :0  
+##      TrIBE        TrBR        C3G               C4G        Total       
+##  Min.   :0   Min.   :0   Min.   :0.00000   Min.   :0   Min.   :0.9593  
+##  1st Qu.:0   1st Qu.:0   1st Qu.:0.00000   1st Qu.:0   1st Qu.:1.0427  
+##  Median :0   Median :0   Median :0.00140   Median :0   Median :1.3537  
+##  Mean   :0   Mean   :0   Mean   :0.01992   Mean   :0   Mean   :1.2784  
+##  3rd Qu.:0   3rd Qu.:0   3rd Qu.:0.04690   3rd Qu.:0   3rd Qu.:1.4031  
+##  Max.   :0   Max.   :0   Max.   :0.08850   Max.   :0   Max.   :1.6106
+

Now that we have processed the output data, we can plot the data and see how the variables evolve across the years. The plotLPJData function will plot the data as a time series using the zoo library. For this example we could plot the lai data.

+
plotLPJData(x = LPJout, typeList = "lai" , outDir = outDir, save.plots = FALSE)
+

+
+
+

Any question?

+

If you have any doubts about the functions, please check the help files.

+
+ + + + + + + +