Modular and universal bioinformatics
npm install bionode
If you want to install it globally and use it as a command line tool add
npm install bionode -g
The previous commands will install all bionode modules currently available. If you don't need all modules and prefer to be more selective, have a look at the list of modules.
If you're using bionode with Node.js, you can require the module:
var bionode = require('bionode')
If you're using it as a command line tool, type bionode <module> <command> <arguments>, e.g.:
bionode ncbi search genome solenopsis invicta
Please read the documentation for the methods exposed by bionode.
List of modules
The following are modules available/planned for Bionode.
: Current status of the module
- means the module is still in development but has many features complete and is used intensively.
- means the module still lacks some features, tests or has some issues.
- means the module has been requested, discussed and planned, but is not yet implemented.
: People involved in this module, either through code contribution, ideas or discussion.
If you find a bug please use the issues tracker to report it.
If you need help with this particular module, you can use the respective gitter chat room.
For general help or discussion about the bionode project, you can use the IRC channel #bionode on Freenode.
Bionode is collaborating with BioJS which also has a IRC channel at #biojs.