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Updating the CheckType function #1

merged 3 commits into from Nov 9, 2014

Updating the CheckType function #1

merged 3 commits into from Nov 9, 2014


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@IsmailM IsmailM commented Sep 22, 2014

Let me know what you think...

Here is a comparison between the original and the updated version...,output

Note: Since ACGT are both bases and amino acid, it is sometime impossible to work out which type the sequence is... So this script checks if the sequence is DNA (or RNA) before, checking if it could be a protein (since for it to be a DNA or RNA sequence, there must be a higher percentage of ACGT). You can see an example of this problem in the above link...

BTW. I'm not too sure about line 10 on the test unit - is the undefined supposed to be in the apostrophes?

Also I haven't checked if the unit tests work...

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@coveralls coveralls commented Nov 7, 2014

Coverage Status

Changes Unknown when pulling 1a5a317 on IsmailM:master into * on bionode:master*.

bmpvieira added a commit that referenced this pull request Nov 9, 2014
Updating the CheckType function
@bmpvieira bmpvieira merged commit 8d56f37 into bionode:master Nov 9, 2014
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bmpvieira added a commit that referenced this pull request Apr 20, 2015
Updating the CheckType function
@bmpvieira bmpvieira self-requested a review Apr 6, 2017
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3 participants