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Installation failed - sra toolkit permanently moved #8

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BrettHoutz opened this Issue Jun 16, 2017 · 4 comments

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@BrettHoutz

BrettHoutz commented Jun 16, 2017

I tried to install bionode-sra and the installation failed when it tried to download sra toolkit (sratoolkit.2.3.5-2-mac64.tar.gz). What it downloads is this html file:

<html><head>
<title>301 Moved Permanently</title>
</head><body>
<h1>Moved Permanently</h1>
<p>The document has moved <a href="https://ftp-trace.ncbi.nlm.nih.gov/sra/sdk/2.3.5-2/sratoolkit.2.3.5-2-mac64.tar.gz">here</a>.</p>
</body></html>

For now, i'll manually download the toolkit from the new location and try to continue the installation process from there.

@amanjeev

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amanjeev commented Jun 16, 2017

That error means that you (bionode-sra, actually) are trying to download via the old unsecure (http) url. This was fixed via a PR. https://github.com/bionode/bionode-sra/blob/master/sra/Makefile#L31

It could be that you are using an older version of this package or I think @bmpvieira needs to release a newer version?

@BrettHoutz

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BrettHoutz commented Jun 16, 2017

I installed from npm today, and the version is 1.0.2. The Makefile that was downloaded still uses http.

Thanks for the quick response!

@amanjeev

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amanjeev commented Jun 16, 2017

No worries! :-)

I will let @bmpvieira respond.

@bmpvieira bmpvieira self-assigned this Aug 23, 2017

@bmpvieira bmpvieira added the bug label Aug 23, 2017

@bmpvieira

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bmpvieira commented Aug 23, 2017

Sorry for taking so long to reply. The latest changes just needed to be published on npm. It should be working now. FYI, you can also install the latest development version by doing:

git clone git@github.com:bionode/bionode-sra.git
cd bionode-sra
npm link

@bmpvieira bmpvieira closed this Aug 23, 2017

@bmpvieira bmpvieira moved this from In Progress to Done in Bionode Project Board Aug 23, 2017

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