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Parallelize BAM chunks #36

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thejmazz opened this issue Jul 11, 2016 · 1 comment

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thejmazz commented Jul 11, 2016

parallelization with patches of bam
for example, split bam into 20 sections if 20 cores available
both options: concatenate vs. run analysis on regions

Example:

get whole genome reference, produce BAM from it
run, in parallel, a task on each chromosome
for each chromosome task, after its done do further analysis AND
after all chromosomes finish, do something that needs all of them (e.g. GWAS)

thejmazz added the examples label

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thejmazz commented Jul 20, 2017

@tiagofilipe12 this is related to #66

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