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Trinity Pipeline #37

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thejmazz opened this issue Jul 11, 2016 · 0 comments
Open

Trinity Pipeline #37

thejmazz opened this issue Jul 11, 2016 · 0 comments

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@thejmazz
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@thejmazz thejmazz commented Jul 11, 2016

  1. rna sras (ants, flies, etc.)
  2. filter
  3. transcriptome assembly (trinity -> trinity.fasta)
  4. pull out longest transcript
  5. take sra reads that contributed to assembly, map them to assembly (e.g. blast)
  6. fastq that only contains reads that contributed to this longest transcript
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