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flag to allow input resolution to fallback to cwd #44

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thejmazz opened this Issue Oct 29, 2016 · 1 comment

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@thejmazz
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thejmazz commented Oct 29, 2016

by default off, but can be useful for putting quick pipelines together.

else need to make sure files end up in DAG

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thejmazz commented Oct 29, 2016

For example, to get starting files from CWD into DAG:

const getters = task({
  input: {
    reference: '*.fna',
    reads: '*.fq'
  },
  output: [ 'reference.fna', 'reads.fq' ]
}, ({ input: { reference, reads } }) => `
cp ${reference} reference.fna && \
cp ${reads} reads.fq
`)

@bmpvieira bmpvieira added this to Backlog in Bionode Project Board Mar 29, 2017

@tiagofilipe12 tiagofilipe12 added this to DAG related in Watermill board Jul 21, 2017

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