Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Added a tutorial on how to run "two-mappers" example #55

Merged
merged 8 commits into from Jun 13, 2017

Conversation

tiagofilipe12
Copy link
Member

This PR adds a README.md to examples/pipelines/two-mappers that can be used as a walk-through guide on how to build a similar pipeline or even to run that pipeline. Also, adds a pipeline_lazy.js that is intended to provide a solution to the proposed challenge in the README.md.


Also, you need to have installed:

1) **Node.js** version 7 or higher.
Copy link
Member

Choose a reason for hiding this comment

The reason will be displayed to describe this comment to others. Learn more.

I think 6 is sufficient

Copy link
Member Author

Choose a reason for hiding this comment

The reason will be displayed to describe this comment to others. Learn more.

Shall we put 6? I only tested 4 and 7.

@codecov-io
Copy link

Codecov Report

Merging #55 into master will not change coverage.
The diff coverage is n/a.

Impacted file tree graph

@@           Coverage Diff           @@
##           master      #55   +/-   ##
=======================================
  Coverage   80.64%   80.64%           
=======================================
  Files          36       36           
  Lines         806      806           
  Branches       99       99           
=======================================
  Hits          650      650           
  Misses        156      156

Continue to review full report at Codecov.

Legend - Click here to learn more
Δ = absolute <relative> (impact), ø = not affected, ? = missing data
Powered by Codecov. Last update bd3cf7f...d79fbf4. Read the comment docs.

5) **[bwa](http://bio-bwa.sourceforge.net/)**
6) **[samtools](http://samtools.sourceforge.net/)**

However, don't worry you can use [this](https://github.com/tiagofilipe12/docker-watermill-tutorial)
Copy link
Member

Choose a reason for hiding this comment

The reason will be displayed to describe this comment to others. Learn more.

we can publish these on bionode organization on docker hub later

Copy link
Member

@thejmazz thejmazz left a comment

Choose a reason for hiding this comment

The reason will be displayed to describe this comment to others. Learn more.

lgtm

@thejmazz thejmazz merged commit d9bdd40 into bionode:master Jun 13, 2017
Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Projects
Development

Successfully merging this pull request may close these issues.

None yet

3 participants