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can we similarly have a function to find detect non canonical translation sites? #2

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yeban opened this issue Feb 20, 2014 · 5 comments
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@yeban
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@yeban yeban commented Feb 20, 2014

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@bmpvieira
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@bmpvieira bmpvieira commented Apr 2, 2014

Added very basic checkCanonicalTranslationStartSite in df86e48. Need to implement ORF finder for more advanced stuff.

@yeban
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@yeban yeban commented Apr 17, 2014

translation stop?

@yeban
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@yeban yeban commented Apr 21, 2014

I did translation stop validation myself for the moment. I am not yet sure if I should light up non-canonical stop codon (this is what I am doing at the moment) or highlight longest orf. So please don't implement canonical stop codon check yet.

@yeban
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@yeban yeban commented Apr 21, 2014

I am checking canonical start codon myself as well as it was the easiest route for me for now. I will make a switch to Bionode's method though.

I guess you should be using the word 'CDS' or 'coding_sequence' in method param, documentation, and tests.

@yannickwurm
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@yannickwurm yannickwurm commented May 21, 2014

Is this closable?

@bmpvieira bmpvieira closed this May 23, 2014
@bmpvieira bmpvieira self-assigned this Apr 5, 2017
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