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Collate notes from 4 NGS VC papers into summary+questions #3

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thejmazz opened this Issue May 22, 2016 · 3 comments

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thejmazz commented May 22, 2016 •
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  • Review of alignment and SNP calling algorithms for next-generation sequencing data (Mielczarek, 2015)
  • Genotype and SNP calling from next-generation sequencing data (Nielson, 2011)
  • Best practices for evaluating single nucleotide variant calling methods for microbial genomics (Olson, 2015)
  • A survey of tools for variant analysis of next-generation genome sequencing data (Pabinger, 2012)

@thejmazz thejmazz referenced this issue May 22, 2016

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Week 1 #9

7 of 7 tasks complete

@thejmazz thejmazz added this to the Week 1 milestone May 22, 2016

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thejmazz commented May 23, 2016

All papers read and highlighted
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thejmazz commented May 23, 2016

Understanding SAM/BAM - http://homer.salk.edu/homer/basicTutorial/samfiles.html
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thejmazz commented May 25, 2016

Going to mark this as complete for now. More notes will get done as I write up a blog post on the topic

@thejmazz thejmazz closed this May 25, 2016

@bmpvieira bmpvieira added this to Done in Bionode Project Board Mar 29, 2017

@bmpvieira bmpvieira added the discussion label Mar 29, 2017

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