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VC with snakemake #6

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thejmazz opened this issue May 22, 2016 · 1 comment
Closed

VC with snakemake #6

thejmazz opened this issue May 22, 2016 · 1 comment
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@thejmazz
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@thejmazz thejmazz commented May 22, 2016

Home Documentation

Presentations

Tutorials

Examples

Papers

  • Snakemake—a scalable bioinformatics workflow engine
  • Parallelization, Scalability, and Reproducibility in Next-Generation Sequencing Analysis

Resources

Discussion

Illustrate

  • embedded Python
  • wrappers
  • benchmarks
  • reports
  • dag
  • expand
  • config
  • input functions
  • rule params
  • logging
  • temporary/protected files
@thejmazz thejmazz mentioned this issue May 22, 2016
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@thejmazz thejmazz added this to the Week 1 milestone May 23, 2016
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@thejmazz thejmazz commented Jun 2, 2016

snakemake --forceall --dag | dot -Tpng > dag.png
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