…:ExecDir default and also a lot more common everywhere else. Previously, no executables were being installed. Also drop file extension.
…::zilla. * bp_genbank_ref_extractor.pl: use utf8 because of "Carnë", remove link for bug tracker and mailing since these are now added automatically on the FEEDBACK section
to experimental on perl 5.18.
in combination with other option
before applying it again on bioperl
repo is small and have only a few test files.
…or 'protein-coding'. * the current code was checking the gene type, and treat it as pseudo gene if type was 'pseudo', and as protein coding otherwise. However, this approach ignores some less common cases such as long non-coding RNA (e.g., H19 with UID 14955), and even regions of the genome (with type of 'other') which sometimes appear annotated as genes (e.g., Hist3 with UID 15268). There may be other gene types that which we are not aware of, so we limit ourselves to coding and pseudo genes.
…to NCBI servers.
…ntrezGene data structure
…ne data structure
…e online database