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updated email for bioperl

svn path=/bioperl-corba-client/trunk/; revision=25
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commit 57902d28bb35cdf291c2e13016a3a463cecca5aa 1 parent 5fbf4f5
Jason Stajich hyphaltip authored
4 Bio/CorbaClient/Base.pm
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@@ -38,8 +38,8 @@ and other Bioperl modules. Send your comments and suggestions preferably
to one of the Bioperl mailing lists.
Your participation is much appreciated.
- vsns-bcd-perl@lists.uni-bielefeld.de - General discussion
- vsns-bcd-perl-guts@lists.uni-bielefeld.de - Technically-oriented discussion
+ bioperl-l@bio.perl.org - General discussion
+ bioperl-guts-l@bio.perl.org - Technically-oriented discussion
http://bio.perl.org/MailList.html - About the mailing lists
=head2 Reporting Bugs
4 Bio/CorbaClient/ORB.pm
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@@ -35,8 +35,8 @@ and other Bioperl modules. Send your comments and suggestions preferably
to one of the Bioperl mailing lists.
Your participation is much appreciated.
- vsns-bcd-perl@lists.uni-bielefeld.de - General discussion
- vsns-bcd-perl-guts@lists.uni-bielefeld.de - Technically-oriented discussion
+ bioperl-l@bio.perl.org - General discussion
+ bioperl-guts-l@bio.perl.org - Technically-oriented discussion
http://bio.perl.org/MailList.html - About the mailing lists
=head2 Reporting Bugs
4 Bio/CorbaClient/PrimarySeq.pm
View
@@ -31,8 +31,8 @@ and other Bioperl modules. Send your comments and suggestions preferably
to one of the Bioperl mailing lists.
Your participation is much appreciated.
- vsns-bcd-perl@lists.uni-bielefeld.de - General discussion
- vsns-bcd-perl-guts@lists.uni-bielefeld.de - Technically-oriented discussion
+ bioperl-l@bio.perl.org - General discussion
+ bioperl-guts-l@bio.perl.org - Technically-oriented discussion
http://bio.perl.org/MailList.html - About the mailing lists
=head2 Reporting Bugs
4 Bio/CorbaClient/PrimarySeqIterator.pm
View
@@ -31,8 +31,8 @@ and other Bioperl modules. Send your comments and suggestions preferably
to one of the Bioperl mailing lists.
Your participation is much appreciated.
- vsns-bcd-perl@lists.uni-bielefeld.de - General discussion
- vsns-bcd-perl-guts@lists.uni-bielefeld.de - Technically-oriented discussion
+ bioperl-l@bio.perl.org - General discussion
+ bioperl-guts-l@bio.perl.org - Technically-oriented discussion
http://bio.perl.org/MailList.html - About the mailing lists
=head2 Reporting Bugs
4 Bio/CorbaClient/Seq.pm
View
@@ -31,8 +31,8 @@ and other Bioperl modules. Send your comments and suggestions preferably
to one of the Bioperl mailing lists.
Your participation is much appreciated.
- vsns-bcd-perl@lists.uni-bielefeld.de - General discussion
- vsns-bcd-perl-guts@lists.uni-bielefeld.de - Technically-oriented discussion
+ bioperl-l@bio.perl.org - General discussion
+ bioperl-guts-l@bio.perl.org - Technically-oriented discussion
http://bio.perl.org/MailList.html - About the mailing lists
=head2 Reporting Bugs
4 Bio/CorbaClient/SeqFeature.pm
View
@@ -31,8 +31,8 @@ and other Bioperl modules. Send your comments and suggestions preferably
to one of the Bioperl mailing lists.
Your participation is much appreciated.
- vsns-bcd-perl@lists.uni-bielefeld.de - General discussion
- vsns-bcd-perl-guts@lists.uni-bielefeld.de - Technically-oriented discussion
+ bioperl-l@bio.perl.org - General discussion
+ bioperl-guts-l@bio.perl.org - Technically-oriented discussion
http://bio.perl.org/MailList.html - About the mailing lists
=head2 Reporting Bugs
4 Bio/DB/Biocorba.pm
View
@@ -31,8 +31,8 @@ and other Bioperl modules. Send your comments and suggestions preferably
to one of the Bioperl mailing lists.
Your participation is much appreciated.
- vsns-bcd-perl@lists.uni-bielefeld.de - General discussion
- vsns-bcd-perl-guts@lists.uni-bielefeld.de - Technically-oriented discussion
+ bioperl-l@bio.perl.org - General discussion
+ bioperl-guts-l@bio.perl.org - Technically-oriented discussion
http://bio.perl.org/MailList.html - About the mailing lists
=head2 Reporting Bugs
4 Bio/SeqIO/biocorba.pm
View
@@ -41,8 +41,8 @@ and other Bioperl modules. Send your comments and suggestions preferably
to one of the Bioperl mailing lists.
Your participation is much appreciated.
- vsns-bcd-perl@lists.uni-bielefeld.de - General discussion
- vsns-bcd-perl-guts@lists.uni-bielefeld.de - Technically-oriented discussion
+ bioperl-l@bio.perl.org - General discussion
+ bioperl-guts-l@bio.perl.org - Technically-oriented discussion
http://bio.perl.org/MailList.html - About the mailing lists
=head2 Reporting Bugs
2  Makefile.PL
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@@ -10,7 +10,7 @@
#
# If you want help with this Makefile get in touch with
# the bioperl core by sending a message to bioperl-bugs@bio.perl.org
-# for real bugs or vsns-bcd-perl-guts@lists.uni-bielefeld.de
+# for real bugs or bioperl-guts-l@bio.perl.org
# to send a mail to all the bioperl core developpers.
#
23 biocorba.idl
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@@ -58,6 +58,8 @@ module org {
exception OutOfRange { string reason; }; // For when start/end points are out of range.
exception EndOfStream { }; // for end of streams
exception UnableToProcess { string reason; }; // All other errors
+ exception NeedsUpdate { string description; };
+ exception DoesNotExist { string description; };
enum SeqType { PROTEIN,DNA,RNA };
@@ -201,11 +203,30 @@ module org {
primaryidList get_primaryidList();
};
+// mutable sequence can add, remove, or update sequences
+ typedef sequence <Seq> SeqList;
+ typedef sequence <PrimarySeq> PrimarySeqList;
+
+ interface UpdateableSeqDB : SeqDB
+ {
+
+ void write_Seq(in SeqList updatedSeqs,
+ in SeqList addedSeqs,
+ in SeqList deadSeqs)
+ raises ( NeedsUpdate,
+ UnableToProcess, OutOfRange );
+
+ void write_PrimarySeq(in PrimarySeqList updatedSeqs,
+ in PrimarySeqList addedSeqs,
+ in PrimarySeqList deadSeqs)
+ raises ( NeedsUpdate, UnableToProcess, OutOfRange );
+
+ };
+
// this allows to get hold of an object which will represent
// accessible code on a particular server. Notice that we allow concepts
// like filenames here. If so wished, the server can throw an exception
// on all the filename code (eg, client is on a different machine to server!)
-
interface BioEnv {
// format can an empty string, in which case BioEnv server guesses/
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