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buzgilla -> redmine

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commit 0224021600b61a7e2d64aa2e43a56c83a365b0a3 1 parent 98d2a0f
Jason Stajich authored March 28, 2011 hyphaltip committed March 28, 2011

Showing 54 changed files with 54 additions and 54 deletions. Show diff stats Hide diff stats

  1. 2  lib/Bio/BioEntry.pm
  2. 2  lib/Bio/DB/BioSQL/AnnotationCollectionAdaptor.pm
  3. 2  lib/Bio/DB/BioSQL/BaseDriver.pm
  4. 2  lib/Bio/DB/BioSQL/BasePersistenceAdaptor.pm
  5. 2  lib/Bio/DB/BioSQL/ClusterAdaptor.pm
  6. 2  lib/Bio/DB/BioSQL/OBDA.pm
  7. 2  lib/Bio/DB/BioSQL/OntologyAdaptor.pm
  8. 2  lib/Bio/DB/BioSQL/Oracle/AnnotationCollectionAdaptorDriver.pm
  9. 2  lib/Bio/DB/BioSQL/Oracle/BasePersistenceAdaptorDriver.pm
  10. 2  lib/Bio/DB/BioSQL/Oracle/BiosequenceAdaptorDriver.pm
  11. 2  lib/Bio/DB/BioSQL/Oracle/PathAdaptorDriver.pm
  12. 2  lib/Bio/DB/BioSQL/Oracle/SpeciesAdaptorDriver.pm
  13. 2  lib/Bio/DB/BioSQL/Oracle/TermAdaptorDriver.pm
  14. 2  lib/Bio/DB/BioSQL/PathAdaptor.pm
  15. 2  lib/Bio/DB/BioSQL/Pg/AnnotationCollectionAdaptorDriver.pm
  16. 2  lib/Bio/DB/BioSQL/Pg/BasePersistenceAdaptorDriver.pm
  17. 2  lib/Bio/DB/BioSQL/Pg/BiosequenceAdaptorDriver.pm
  18. 2  lib/Bio/DB/BioSQL/Pg/PathAdaptorDriver.pm
  19. 2  lib/Bio/DB/BioSQL/Pg/SpeciesAdaptorDriver.pm
  20. 2  lib/Bio/DB/BioSQL/Pg/TermAdaptorDriver.pm
  21. 2  lib/Bio/DB/BioSQL/ReferenceAdaptor.pm
  22. 2  lib/Bio/DB/BioSQL/RelationshipAdaptor.pm
  23. 2  lib/Bio/DB/BioSQL/SeqAdaptor.pm
  24. 2  lib/Bio/DB/BioSQL/SeqFeatureAdaptor.pm
  25. 2  lib/Bio/DB/BioSQL/SimpleValueAdaptor.pm
  26. 2  lib/Bio/DB/BioSQL/SpeciesAdaptor.pm
  27. 2  lib/Bio/DB/BioSQL/TermAdaptor.pm
  28. 2  lib/Bio/DB/BioSQL/mysql/AnnotationCollectionAdaptorDriver.pm
  29. 2  lib/Bio/DB/BioSQL/mysql/BasePersistenceAdaptorDriver.pm
  30. 2  lib/Bio/DB/BioSQL/mysql/BiosequenceAdaptorDriver.pm
  31. 2  lib/Bio/DB/BioSQL/mysql/PathAdaptorDriver.pm
  32. 2  lib/Bio/DB/BioSQL/mysql/SpeciesAdaptorDriver.pm
  33. 2  lib/Bio/DB/BioSQL/mysql/TermAdaptorDriver.pm
  34. 2  lib/Bio/DB/CacheServer/SeqDB.pm
  35. 2  lib/Bio/DB/DBAdaptorI.pm
  36. 2  lib/Bio/DB/DBD.pm
  37. 2  lib/Bio/DB/DBI.pm
  38. 2  lib/Bio/DB/DBI/Oracle.pm
  39. 2  lib/Bio/DB/DBI/Pg.pm
  40. 2  lib/Bio/DB/DBI/Transaction.pm
  41. 2  lib/Bio/DB/DBI/TransactionListener.pm
  42. 2  lib/Bio/DB/DBI/base.pm
  43. 2  lib/Bio/DB/DBI/mysql.pm
  44. 2  lib/Bio/DB/PersistenceAdaptorI.pm
  45. 2  lib/Bio/DB/Persistent/BioNamespace.pm
  46. 2  lib/Bio/DB/Persistent/ObjectRelMapperI.pm
  47. 2  lib/Bio/DB/Persistent/PersistentObject.pm
  48. 2  lib/Bio/DB/Persistent/PersistentObjectFactory.pm
  49. 2  lib/Bio/DB/Persistent/PrimarySeq.pm
  50. 2  lib/Bio/DB/PersistentObjectI.pm
  51. 2  lib/Bio/DB/Query/DBQueryResult.pm
  52. 2  lib/Bio/DB/Query/PrebuiltResult.pm
  53. 2  lib/Bio/DB/Query/QueryResultI.pm
  54. 2  lib/Bio/DB/SimpleDBContext.pm
2  lib/Bio/BioEntry.pm
@@ -52,7 +52,7 @@ Report bugs to the Bioperl bug tracking system to help us keep track
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 of the bugs and their resolution. Bug reports can be submitted via
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 the web:
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-  http://bugzilla.open-bio.org/
  55
+  http://redmine.open-bio.org/projects/bioperl/
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 =head1 AUTHOR - Hilmar Lapp
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2  lib/Bio/DB/BioSQL/AnnotationCollectionAdaptor.pm
@@ -67,7 +67,7 @@ with code and data examples if at all possible.
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 Report bugs to the Bioperl bug tracking system to help us keep track
68 68
 the bugs and their resolution. Bug reports can be submitted via the web:
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-  http://bugzilla.open-bio.org/
  70
+  http://redmine.open-bio.org/projects/bioperl/
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 =head1 AUTHOR - Ewan Birney, Hilmar Lapp
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2  lib/Bio/DB/BioSQL/BaseDriver.pm
@@ -66,7 +66,7 @@ Report bugs to the Bioperl bug tracking system to help us keep track
66 66
 of the bugs and their resolution. Bug reports can be submitted via
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 the web:
68 68
 
69  
-  http://bugzilla.open-bio.org/
  69
+  http://redmine.open-bio.org/projects/bioperl/
70 70
 
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 =head1 AUTHOR - Hilmar Lapp
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2  lib/Bio/DB/BioSQL/BasePersistenceAdaptor.pm
@@ -66,7 +66,7 @@ Report bugs to the Bioperl bug tracking system to help us keep track
66 66
 of the bugs and their resolution. Bug reports can be submitted via
67 67
 the web:
68 68
 
69  
-  http://bugzilla.open-bio.org/
  69
+  http://redmine.open-bio.org/projects/bioperl/
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 =head1 AUTHOR - Hilmar Lapp
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2  lib/Bio/DB/BioSQL/ClusterAdaptor.pm
@@ -65,7 +65,7 @@ Report bugs to the Bioperl bug tracking system to help us keep track
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  Bug reports can be submitted via email or the web:
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   bioperl-bugs@bio.perl.org
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-  http://bugzilla.open-bio.org/
  68
+  http://redmine.open-bio.org/projects/bioperl/
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 =head1 AUTHOR - Hilmar Lapp
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2  lib/Bio/DB/BioSQL/OBDA.pm
@@ -59,7 +59,7 @@ with code and data examples if at all possible.
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 Report bugs to the Bioperl bug tracking system to help us keep track
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 the bugs and their resolution. Bug reports can be submitted via the web:
61 61
 
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-  http://bugzilla.open-bio.org
  62
+  http://redmine.open-bio.org/projects/bioperl
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 =head1 AUTHOR - Brian Osborne
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2  lib/Bio/DB/BioSQL/OntologyAdaptor.pm
@@ -64,7 +64,7 @@ Report bugs to the Bioperl bug tracking system to help us keep track
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  Bug reports can be submitted via email or the web:
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   bioperl-bugs@bioperl.org
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-  http://bugzilla.open-bio.org/
  67
+  http://redmine.open-bio.org/projects/bioperl/
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 =head1 AUTHOR - Hilmar Lapp
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2  lib/Bio/DB/BioSQL/Oracle/AnnotationCollectionAdaptorDriver.pm
@@ -66,7 +66,7 @@ Report bugs to the Bioperl bug tracking system to help us keep track
66 66
 of the bugs and their resolution. Bug reports can be submitted via
67 67
 the web:
68 68
 
69  
-  http://bugzilla.open-bio.org/
  69
+  http://redmine.open-bio.org/projects/bioperl/
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 =head1 AUTHOR - Hilmar Lapp
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2  lib/Bio/DB/BioSQL/Oracle/BasePersistenceAdaptorDriver.pm
@@ -67,7 +67,7 @@ of the bugs and their resolution. Bug reports can be submitted via
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 email or the web:
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   bioperl-bugs@bioperl.org
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-  http://bugzilla.open-bio.org/
  70
+  http://redmine.open-bio.org/projects/bioperl/
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 =head1 AUTHOR - Hilmar Lapp
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2  lib/Bio/DB/BioSQL/Oracle/BiosequenceAdaptorDriver.pm
@@ -67,7 +67,7 @@ of the bugs and their resolution. Bug reports can be submitted via
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 email or the web:
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   bioperl-bugs@bioperl.org
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-  http://bugzilla.open-bio.org/
  70
+  http://redmine.open-bio.org/projects/bioperl/
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 =head1 AUTHOR - Hilmar Lapp
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2  lib/Bio/DB/BioSQL/Oracle/PathAdaptorDriver.pm
@@ -65,7 +65,7 @@ Report bugs to the Bioperl bug tracking system to help us keep track
65 65
 of the bugs and their resolution. Bug reports can be submitted via
66 66
 the web:
67 67
 
68  
-  http://bugzilla.open-bio.org/
  68
+  http://redmine.open-bio.org/projects/bioperl/
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 =head1 AUTHOR - Hilmar Lapp
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2  lib/Bio/DB/BioSQL/Oracle/SpeciesAdaptorDriver.pm
@@ -68,7 +68,7 @@ of the bugs and their resolution. Bug reports can be submitted via
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 email or the web:
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   bioperl-bugs@bioperl.org
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-  http://bugzilla.open-bio.org/
  71
+  http://redmine.open-bio.org/projects/bioperl/
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 =head1 AUTHOR - Hilmar Lapp
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2  lib/Bio/DB/BioSQL/Oracle/TermAdaptorDriver.pm
@@ -65,7 +65,7 @@ Report bugs to the Bioperl bug tracking system to help us keep track
65 65
 of the bugs and their resolution. Bug reports can be submitted via
66 66
 the web:
67 67
 
68  
-  http://bugzilla.open-bio.org/
  68
+  http://redmine.open-bio.org/projects/bioperl/
69 69
 
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 =head1 AUTHOR - Hilmar Lapp
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2  lib/Bio/DB/BioSQL/PathAdaptor.pm
@@ -64,7 +64,7 @@ Report bugs to the Bioperl bug tracking system to help us keep track
64 64
  Bug reports can be submitted via email or the web:
65 65
 
66 66
   bioperl-bugs@bioperl.org
67  
-  http://bugzilla.open-bio.org/
  67
+  http://redmine.open-bio.org/projects/bioperl/
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 =head1 AUTHOR - Hilmar Lapp
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2  lib/Bio/DB/BioSQL/Pg/AnnotationCollectionAdaptorDriver.pm
@@ -65,7 +65,7 @@ Report bugs to the Bioperl bug tracking system to help us keep track
65 65
 of the bugs and their resolution. Bug reports can be submitted via
66 66
 the web:
67 67
 
68  
-  http://bugzilla.open-bio.org/
  68
+  http://redmine.open-bio.org/projects/bioperl/
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 =head1 AUTHOR - Yves Bastide
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2  lib/Bio/DB/BioSQL/Pg/BasePersistenceAdaptorDriver.pm
@@ -66,7 +66,7 @@ of the bugs and their resolution. Bug reports can be submitted via
66 66
 email or the web:
67 67
 
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   bioperl-bugs@bioperl.org
69  
-  http://bugzilla.open-bio.org/
  69
+  http://redmine.open-bio.org/projects/bioperl/
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71 71
 =head1 AUTHOR - Yves Bastide
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2  lib/Bio/DB/BioSQL/Pg/BiosequenceAdaptorDriver.pm
@@ -65,7 +65,7 @@ Report bugs to the Bioperl bug tracking system to help us keep track
65 65
 of the bugs and their resolution. Bug reports can be submitted via
66 66
 the web:
67 67
 
68  
-  http://bugzilla.open-bio.org/
  68
+  http://redmine.open-bio.org/projects/bioperl/
69 69
 
70 70
 =head1 AUTHOR - Yves Bastide
71 71
 
2  lib/Bio/DB/BioSQL/Pg/PathAdaptorDriver.pm
@@ -65,7 +65,7 @@ Report bugs to the Bioperl bug tracking system to help us keep track
65 65
 of the bugs and their resolution. Bug reports can be submitted via
66 66
 the web:
67 67
 
68  
-  http://bugzilla.open-bio.org/
  68
+  http://redmine.open-bio.org/projects/bioperl/
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 =head1 AUTHOR - Hilmar Lapp
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2  lib/Bio/DB/BioSQL/Pg/SpeciesAdaptorDriver.pm
@@ -68,7 +68,7 @@ of the bugs and their resolution. Bug reports can be submitted via
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 email or the web:
69 69
 
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   bioperl-bugs@bioperl.org
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-  http://bugzilla.open-bio.org/
  71
+  http://redmine.open-bio.org/projects/bioperl/
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 =head1 AUTHOR - Hilmar Lapp
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2  lib/Bio/DB/BioSQL/Pg/TermAdaptorDriver.pm
@@ -65,7 +65,7 @@ Report bugs to the Bioperl bug tracking system to help us keep track
65 65
 of the bugs and their resolution. Bug reports can be submitted via
66 66
 the web:
67 67
 
68  
-  http://bugzilla.open-bio.org/
  68
+  http://redmine.open-bio.org/projects/bioperl/
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 =head1 AUTHOR - Hilmar Lapp
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2  lib/Bio/DB/BioSQL/ReferenceAdaptor.pm
@@ -68,7 +68,7 @@ Report bugs to the Bioperl bug tracking system to help us keep track
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  Bug reports can be submitted via email or the web:
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   bioperl-bugs@bio.perl.org
71  
-  http://bugzilla.open-bio.org/
  71
+  http://redmine.open-bio.org/projects/bioperl/
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 =head1 AUTHOR - Elia Stupka, Hilmar Lapp
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2  lib/Bio/DB/BioSQL/RelationshipAdaptor.pm
@@ -64,7 +64,7 @@ Report bugs to the Bioperl bug tracking system to help us keep track
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  Bug reports can be submitted via email or the web:
65 65
 
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   bioperl-bugs@bioperl.org
67  
-  http://bugzilla.open-bio.org/
  67
+  http://redmine.open-bio.org/projects/bioperl/
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 =head1 AUTHOR - Hilmar Lapp
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2  lib/Bio/DB/BioSQL/SeqAdaptor.pm
@@ -67,7 +67,7 @@ with code and data examples if at all possible.
67 67
 Report bugs to the Bioperl bug tracking system to help us keep track
68 68
 the bugs and their resolution. Bug reports can be submitted via the web:
69 69
 
70  
-  http://bugzilla.open-bio.org/
  70
+  http://redmine.open-bio.org/projects/bioperl/
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 =head1 AUTHOR - Ewan Birney, Hilmar Lapp
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2  lib/Bio/DB/BioSQL/SeqFeatureAdaptor.pm
@@ -70,7 +70,7 @@ Report bugs to the Bioperl bug tracking system to help us keep track
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  Bug reports can be submitted via email or the web:
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   bioperl-bugs@bio.perl.org
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-  http://bugzilla.open-bio.org/
  73
+  http://redmine.open-bio.org/projects/bioperl/
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 =head1 AUTHOR - Ewan Birney, Hilmar Lapp
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2  lib/Bio/DB/BioSQL/SimpleValueAdaptor.pm
@@ -62,7 +62,7 @@ Report bugs to the Bioperl bug tracking system to help us keep track
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  Bug reports can be submitted via email or the web:
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   bioperl-bugs@bio.perl.org
65  
-  http://bugzilla.open-bio.org/
  65
+  http://redmine.open-bio.org/projects/bioperl/
66 66
 
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 =head1 AUTHOR - Hilmar Lapp
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2  lib/Bio/DB/BioSQL/SpeciesAdaptor.pm
@@ -70,7 +70,7 @@ Report bugs to the Bioperl bug tracking system to help us keep track
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  Bug reports can be submitted via email or the web:
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   bioperl-bugs@bio.perl.org
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-  http://bugzilla.open-bio.org/
  73
+  http://redmine.open-bio.org/projects/bioperl/
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 =head1 AUTHOR - Ewan Birney, Hilmar Lapp
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2  lib/Bio/DB/BioSQL/TermAdaptor.pm
@@ -63,7 +63,7 @@ Report bugs to the Bioperl bug tracking system to help us keep track
63 63
  Bug reports can be submitted via email or the web:
64 64
 
65 65
   bioperl-bugs@bio.perl.org
66  
-  http://bugzilla.open-bio.org/
  66
+  http://redmine.open-bio.org/projects/bioperl/
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 =head1 AUTHOR - Ewan Birney, Hilmar Lapp
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2  lib/Bio/DB/BioSQL/mysql/AnnotationCollectionAdaptorDriver.pm
@@ -66,7 +66,7 @@ Report bugs to the Bioperl bug tracking system to help us keep track
66 66
 of the bugs and their resolution. Bug reports can be submitted via
67 67
 the web:
68 68
 
69  
-  http://bugzilla.open-bio.org/
  69
+  http://redmine.open-bio.org/projects/bioperl/
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 =head1 AUTHOR - Hilmar Lapp
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2  lib/Bio/DB/BioSQL/mysql/BasePersistenceAdaptorDriver.pm
@@ -67,7 +67,7 @@ of the bugs and their resolution. Bug reports can be submitted via
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 email or the web:
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   bioperl-bugs@bioperl.org
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-  http://bugzilla.open-bio.org/
  70
+  http://redmine.open-bio.org/projects/bioperl/
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 =head1 AUTHOR - Hilmar Lapp
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2  lib/Bio/DB/BioSQL/mysql/BiosequenceAdaptorDriver.pm
@@ -67,7 +67,7 @@ of the bugs and their resolution. Bug reports can be submitted via
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 email or the web:
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   bioperl-bugs@bioperl.org
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-  http://bugzilla.open-bio.org/
  70
+  http://redmine.open-bio.org/projects/bioperl/
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 =head1 AUTHOR - Hilmar Lapp
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2  lib/Bio/DB/BioSQL/mysql/PathAdaptorDriver.pm
@@ -65,7 +65,7 @@ Report bugs to the Bioperl bug tracking system to help us keep track
65 65
 of the bugs and their resolution. Bug reports can be submitted via
66 66
 the web:
67 67
 
68  
-  http://bugzilla.open-bio.org/
  68
+  http://redmine.open-bio.org/projects/bioperl/
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 =head1 AUTHOR - Hilmar Lapp
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2  lib/Bio/DB/BioSQL/mysql/SpeciesAdaptorDriver.pm
@@ -67,7 +67,7 @@ of the bugs and their resolution. Bug reports can be submitted via
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 email or the web:
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   bioperl-bugs@bioperl.org
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-  http://bugzilla.open-bio.org/
  70
+  http://redmine.open-bio.org/projects/bioperl/
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 =head1 AUTHOR - Hilmar Lapp
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2  lib/Bio/DB/BioSQL/mysql/TermAdaptorDriver.pm
@@ -65,7 +65,7 @@ Report bugs to the Bioperl bug tracking system to help us keep track
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 of the bugs and their resolution. Bug reports can be submitted via
66 66
 the web:
67 67
 
68  
-  http://bugzilla.open-bio.org/
  68
+  http://redmine.open-bio.org/projects/bioperl/
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 =head1 AUTHOR - Hilmar Lapp
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2  lib/Bio/DB/CacheServer/SeqDB.pm
@@ -53,7 +53,7 @@ Report bugs to the Bioperl bug tracking system to help us keep track
53 53
 the bugs and their resolution.  Bug reports can be submitted via 
54 54
 the web:
55 55
 
56  
-  http://bugzilla.open-bio.org/
  56
+  http://redmine.open-bio.org/projects/bioperl/
57 57
 
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 =head1 AUTHOR - Ewan Birney
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2  lib/Bio/DB/DBAdaptorI.pm
@@ -69,7 +69,7 @@ Report bugs to the Bioperl bug tracking system to help us keep track
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 of the bugs and their resolution. Bug reports can be submitted via
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 the web:
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72  
-  http://bugzilla.open-bio.org/
  72
+  http://redmine.open-bio.org/projects/bioperl/
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 =head1 AUTHOR - Hilmar Lapp
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2  lib/Bio/DB/DBD.pm
@@ -66,7 +66,7 @@ Report bugs to the Bioperl bug tracking system to help us keep track
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 of the bugs and their resolution. Bug reports can be submitted via
67 67
 the web:
68 68
 
69  
-  http://bugzilla.open-bio.org/
  69
+  http://redmine.open-bio.org/projects/bioperl/
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 =head1 AUTHOR - Hilmar Lapp
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2  lib/Bio/DB/DBI.pm
@@ -66,7 +66,7 @@ Report bugs to the Bioperl bug tracking system to help us keep track
66 66
 of the bugs and their resolution. Bug reports can be submitted via
67 67
 the web:
68 68
 
69  
-  http://bugzilla.open-bio.org/
  69
+  http://redmine.open-bio.org/projects/bioperl/
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 =head1 AUTHOR - Hilmar Lapp
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2  lib/Bio/DB/DBI/Oracle.pm
@@ -66,7 +66,7 @@ Report bugs to the Bioperl bug tracking system to help us keep track
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 of the bugs and their resolution. Bug reports can be submitted via
67 67
 the web:
68 68
 
69  
-  http://bugzilla.open-bio.org/
  69
+  http://redmine.open-bio.org/projects/bioperl/
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 =head1 AUTHOR - Hilmar Lapp
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2  lib/Bio/DB/DBI/Pg.pm
@@ -63,7 +63,7 @@ Report bugs to the Bioperl bug tracking system to help us keep track
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 of the bugs and their resolution. Bug reports can be submitted via
64 64
 the web:
65 65
 
66  
-  http://bugzilla.open-bio.org/
  66
+  http://redmine.open-bio.org/projects/bioperl/
67 67
 
68 68
 =head1 AUTHOR - Yves Bastide
69 69
 
2  lib/Bio/DB/DBI/Transaction.pm
@@ -66,7 +66,7 @@ Report bugs to the Bioperl bug tracking system to help us keep track
66 66
 of the bugs and their resolution. Bug reports can be submitted via
67 67
 the web:
68 68
 
69  
-  http://bugzilla.open-bio.org/
  69
+  http://redmine.open-bio.org/projects/bioperl/
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 =head1 AUTHOR - Hilmar Lapp
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2  lib/Bio/DB/DBI/TransactionListener.pm
@@ -91,7 +91,7 @@ Report bugs to the Bioperl bug tracking system to help us keep track
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 of the bugs and their resolution. Bug reports can be submitted via
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 the web:
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2  lib/Bio/DB/DBI/mysql.pm
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2  lib/Bio/DB/PersistenceAdaptorI.pm
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2  lib/Bio/DB/Persistent/BioNamespace.pm
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2  lib/Bio/DB/Persistent/ObjectRelMapperI.pm
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2  lib/Bio/DB/Persistent/PersistentObject.pm
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2  lib/Bio/DB/Persistent/PersistentObjectFactory.pm
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2  lib/Bio/DB/Persistent/PrimarySeq.pm
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2  lib/Bio/DB/Query/DBQueryResult.pm
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2  lib/Bio/DB/Query/PrebuiltResult.pm
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2  lib/Bio/DB/Query/QueryResultI.pm
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2  lib/Bio/DB/SimpleDBContext.pm
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