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Fixed inconsistencies in the PODs of the loading scripts. Fixed error…

…s and

inconsistencies in the INSTALL document.

svn path=/bioperl-db/trunk/; revision=14776
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1 parent 88f6db0 commit 6292c71e6266bb5423b79ee720dee4a87ab0e690 @hlapp hlapp committed Aug 1, 2008
Showing with 8 additions and 7 deletions.
  1. +5 −4 INSTALL
  2. +2 −2 scripts/biosql/load_ontology.pl
  3. +1 −1 scripts/biosql/load_seqdatabase.pl
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9 INSTALL
@@ -11,9 +11,10 @@ INSTALL BIOSQL
The bioperl-db package is designed to work with the BioSQL database.
Install the BioSQL package by following the instructions in its
-INSTALL file. You can obtain the BioSQL package at www.open-bio.org.
-BioSQL requires a relational database, either Mysql, Oracle, or
-Postgres.
+INSTALL file. You can obtain the BioSQL package at www.biosql.org.
+BioSQL requires a relational database, either Mysql, Oracle, or
+PostgreSQL. Support for additional RDBMSs gets added every once in a
+while, check out the documentation at www.biosql.org.
INSTALLATION
@@ -84,7 +85,7 @@ following commands:
>./Build install
NOTE: bioperl-db tests require that the BioSQL database you configure
-does NOT have NCBI taxonomy loaded. Also, the './Build install' step
+does NOT have the NCBI taxonomy loaded. Also, the './Build install' step
may require that you have root privileges.
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4 scripts/biosql/load_ontology.pl
@@ -43,8 +43,8 @@ =head1 SYNOPSIS
=head1 DESCRIPTION
-This script loads a bioperl-db with an ontology. There are a number of
-options to do with where the bioperl-db database is (ie, hostname,
+This script loads a BioSQL database with an ontology. There are a number of
+options to do with where the BioSQL database is (ie, hostname,
user for database, password, database name) followed by the database
name you wish to load this into and then any number of files that make
up the ontology. The files are assumed formatted identically with the
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2 scripts/biosql/load_seqdatabase.pl
@@ -20,7 +20,7 @@ =head1 SYNOPSIS
=head1 DESCRIPTION
-This script loads a Biosql database with sequences. There are a number
+This script loads a BioSQL database with sequences. There are a number
of options that have to do with where the database is and how it's
accessed and the format and namespace of the input files. These are
followed by any number of file names. The files are assumed to be

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