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moved Bio into lib to make Module::Build installation more normal

svn path=/bioperl-db/trunk/; revision=15910
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1 parent a619ab6 commit cc427ed40ed42a1223b33d2f7ff0d7df92fe6347 @sendu sendu committed Aug 9, 2009
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  1. 0 { → lib}/Bio/BioEntry.pm
  2. 0 { → lib}/Bio/DB/BioDB.pm
  3. 0 { → lib}/Bio/DB/BioSQL/AnnotationCollectionAdaptor.pm
  4. 0 { → lib}/Bio/DB/BioSQL/BaseDriver.pm
  5. 0 { → lib}/Bio/DB/BioSQL/BasePersistenceAdaptor.pm
  6. 0 { → lib}/Bio/DB/BioSQL/BioNamespaceAdaptor.pm
  7. 0 { → lib}/Bio/DB/BioSQL/BiosequenceAdaptor.pm
  8. 0 { → lib}/Bio/DB/BioSQL/ClusterAdaptor.pm
  9. 0 { → lib}/Bio/DB/BioSQL/CommentAdaptor.pm
  10. 0 { → lib}/Bio/DB/BioSQL/DBAdaptor.pm
  11. 0 { → lib}/Bio/DB/BioSQL/DBLinkAdaptor.pm
  12. 0 { → lib}/Bio/DB/BioSQL/LocationAdaptor.pm
  13. 0 { → lib}/Bio/DB/BioSQL/MultiDB.pm
  14. 0 { → lib}/Bio/DB/BioSQL/OBDA.pm
  15. 0 { → lib}/Bio/DB/BioSQL/OntologyAdaptor.pm
  16. 0 { → lib}/Bio/DB/BioSQL/Oracle/AnnotationCollectionAdaptorDriver.pm
  17. 0 { → lib}/Bio/DB/BioSQL/Oracle/BasePersistenceAdaptorDriver.pm
  18. 0 { → lib}/Bio/DB/BioSQL/Oracle/BiosequenceAdaptorDriver.pm
  19. 0 { → lib}/Bio/DB/BioSQL/Oracle/PathAdaptorDriver.pm
  20. 0 { → lib}/Bio/DB/BioSQL/Oracle/SpeciesAdaptorDriver.pm
  21. 0 { → lib}/Bio/DB/BioSQL/Oracle/TermAdaptorDriver.pm
  22. 0 { → lib}/Bio/DB/BioSQL/PathAdaptor.pm
  23. 0 { → lib}/Bio/DB/BioSQL/Pg/AnnotationCollectionAdaptorDriver.pm
  24. 0 { → lib}/Bio/DB/BioSQL/Pg/BasePersistenceAdaptorDriver.pm
  25. 0 { → lib}/Bio/DB/BioSQL/Pg/BiosequenceAdaptorDriver.pm
  26. 0 { → lib}/Bio/DB/BioSQL/Pg/PathAdaptorDriver.pm
  27. 0 { → lib}/Bio/DB/BioSQL/Pg/SpeciesAdaptorDriver.pm
  28. 0 { → lib}/Bio/DB/BioSQL/Pg/TermAdaptorDriver.pm
  29. 0 { → lib}/Bio/DB/BioSQL/PrimarySeqAdaptor.pm
  30. 0 { → lib}/Bio/DB/BioSQL/ReferenceAdaptor.pm
  31. 0 { → lib}/Bio/DB/BioSQL/RelationshipAdaptor.pm
  32. 0 { → lib}/Bio/DB/BioSQL/SeqAdaptor.pm
  33. 0 { → lib}/Bio/DB/BioSQL/SeqFeatureAdaptor.pm
  34. 0 { → lib}/Bio/DB/BioSQL/SimpleValueAdaptor.pm
  35. 0 { → lib}/Bio/DB/BioSQL/SpeciesAdaptor.pm
  36. 0 { → lib}/Bio/DB/BioSQL/TermAdaptor.pm
  37. 0 { → lib}/Bio/DB/BioSQL/mysql/AnnotationCollectionAdaptorDriver.pm
  38. 0 { → lib}/Bio/DB/BioSQL/mysql/BasePersistenceAdaptorDriver.pm
  39. 0 { → lib}/Bio/DB/BioSQL/mysql/BiosequenceAdaptorDriver.pm
  40. 0 { → lib}/Bio/DB/BioSQL/mysql/PathAdaptorDriver.pm
  41. 0 { → lib}/Bio/DB/BioSQL/mysql/SpeciesAdaptorDriver.pm
  42. 0 { → lib}/Bio/DB/BioSQL/mysql/TermAdaptorDriver.pm
  43. 0 { → lib}/Bio/DB/CacheServer/SeqDB.pm
  44. 0 { → lib}/Bio/DB/DBAdaptorI.pm
  45. 0 { → lib}/Bio/DB/DBContextI.pm
  46. 0 { → lib}/Bio/DB/DBD.pm
  47. 0 { → lib}/Bio/DB/DBI.pm
  48. 0 { → lib}/Bio/DB/DBI/Oracle.pm
  49. 0 { → lib}/Bio/DB/DBI/Pg.pm
  50. 0 { → lib}/Bio/DB/DBI/Transaction.pm
  51. 0 { → lib}/Bio/DB/DBI/TransactionListener.pm
  52. 0 { → lib}/Bio/DB/DBI/base.pm
  53. 0 { → lib}/Bio/DB/DBI/mysql.pm
  54. 0 { → lib}/Bio/DB/EasyArgv.pm
  55. 0 { → lib}/Bio/DB/PersistenceAdaptorI.pm
  56. 0 { → lib}/Bio/DB/Persistent/BioNamespace.pm
  57. 0 { → lib}/Bio/DB/Persistent/ObjectRelMapperI.pm
  58. 0 { → lib}/Bio/DB/Persistent/PersistentObject.pm
  59. 0 { → lib}/Bio/DB/Persistent/PersistentObjectFactory.pm
  60. 0 { → lib}/Bio/DB/Persistent/PrimarySeq.pm
  61. 0 { → lib}/Bio/DB/Persistent/Seq.pm
  62. 0 { → lib}/Bio/DB/Persistent/SeqFeature.pm
  63. 0 { → lib}/Bio/DB/PersistentObjectI.pm
  64. 0 { → lib}/Bio/DB/Query/AbstractQuery.pm
  65. 0 { → lib}/Bio/DB/Query/BioQuery.pm
  66. 0 { → lib}/Bio/DB/Query/DBQueryResult.pm
  67. 0 { → lib}/Bio/DB/Query/PrebuiltResult.pm
  68. 0 { → lib}/Bio/DB/Query/QueryConstraint.pm
  69. 0 { → lib}/Bio/DB/Query/QueryResultI.pm
  70. 0 { → lib}/Bio/DB/Query/SqlGenerator.pm
  71. 0 { → lib}/Bio/DB/Query/SqlQuery.pm
  72. 0 { → lib}/Bio/DB/SimpleDBContext.pm
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0 Bio/BioEntry.pm → lib/Bio/BioEntry.pm
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0 Bio/DB/BioDB.pm → lib/Bio/DB/BioDB.pm
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0 Bio/DB/BioSQL/AnnotationCollectionAdaptor.pm → .../DB/BioSQL/AnnotationCollectionAdaptor.pm
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0 Bio/DB/BioSQL/BaseDriver.pm → lib/Bio/DB/BioSQL/BaseDriver.pm
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0 Bio/DB/BioSQL/BasePersistenceAdaptor.pm → lib/Bio/DB/BioSQL/BasePersistenceAdaptor.pm
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0 Bio/DB/BioSQL/BioNamespaceAdaptor.pm → lib/Bio/DB/BioSQL/BioNamespaceAdaptor.pm
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0 Bio/DB/BioSQL/BiosequenceAdaptor.pm → lib/Bio/DB/BioSQL/BiosequenceAdaptor.pm
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0 Bio/DB/BioSQL/ClusterAdaptor.pm → lib/Bio/DB/BioSQL/ClusterAdaptor.pm
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0 Bio/DB/BioSQL/CommentAdaptor.pm → lib/Bio/DB/BioSQL/CommentAdaptor.pm
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0 Bio/DB/BioSQL/DBAdaptor.pm → lib/Bio/DB/BioSQL/DBAdaptor.pm
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0 Bio/DB/BioSQL/DBLinkAdaptor.pm → lib/Bio/DB/BioSQL/DBLinkAdaptor.pm
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0 Bio/DB/BioSQL/LocationAdaptor.pm → lib/Bio/DB/BioSQL/LocationAdaptor.pm
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0 Bio/DB/BioSQL/MultiDB.pm → lib/Bio/DB/BioSQL/MultiDB.pm
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0 Bio/DB/BioSQL/OBDA.pm → lib/Bio/DB/BioSQL/OBDA.pm
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0 Bio/DB/BioSQL/OntologyAdaptor.pm → lib/Bio/DB/BioSQL/OntologyAdaptor.pm
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0 ...acle/AnnotationCollectionAdaptorDriver.pm → ...acle/AnnotationCollectionAdaptorDriver.pm
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0 ...QL/Oracle/BasePersistenceAdaptorDriver.pm → ...QL/Oracle/BasePersistenceAdaptorDriver.pm
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0 ...BioSQL/Oracle/BiosequenceAdaptorDriver.pm → ...BioSQL/Oracle/BiosequenceAdaptorDriver.pm
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0 Bio/DB/BioSQL/Oracle/PathAdaptorDriver.pm → ...Bio/DB/BioSQL/Oracle/PathAdaptorDriver.pm
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0 Bio/DB/BioSQL/Oracle/SpeciesAdaptorDriver.pm → .../DB/BioSQL/Oracle/SpeciesAdaptorDriver.pm
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0 Bio/DB/BioSQL/Oracle/TermAdaptorDriver.pm → ...Bio/DB/BioSQL/Oracle/TermAdaptorDriver.pm
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0 Bio/DB/BioSQL/PathAdaptor.pm → lib/Bio/DB/BioSQL/PathAdaptor.pm
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0 ...L/Pg/AnnotationCollectionAdaptorDriver.pm → ...L/Pg/AnnotationCollectionAdaptorDriver.pm
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0 ...BioSQL/Pg/BasePersistenceAdaptorDriver.pm → ...BioSQL/Pg/BasePersistenceAdaptorDriver.pm
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0 Bio/DB/BioSQL/Pg/BiosequenceAdaptorDriver.pm → .../DB/BioSQL/Pg/BiosequenceAdaptorDriver.pm
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0 Bio/DB/BioSQL/Pg/PathAdaptorDriver.pm → lib/Bio/DB/BioSQL/Pg/PathAdaptorDriver.pm
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0 Bio/DB/BioSQL/Pg/SpeciesAdaptorDriver.pm → lib/Bio/DB/BioSQL/Pg/SpeciesAdaptorDriver.pm
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0 Bio/DB/BioSQL/Pg/TermAdaptorDriver.pm → lib/Bio/DB/BioSQL/Pg/TermAdaptorDriver.pm
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0 Bio/DB/BioSQL/PrimarySeqAdaptor.pm → lib/Bio/DB/BioSQL/PrimarySeqAdaptor.pm
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0 Bio/DB/BioSQL/ReferenceAdaptor.pm → lib/Bio/DB/BioSQL/ReferenceAdaptor.pm
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0 Bio/DB/BioSQL/RelationshipAdaptor.pm → lib/Bio/DB/BioSQL/RelationshipAdaptor.pm
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0 Bio/DB/BioSQL/SeqAdaptor.pm → lib/Bio/DB/BioSQL/SeqAdaptor.pm
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0 Bio/DB/BioSQL/SeqFeatureAdaptor.pm → lib/Bio/DB/BioSQL/SeqFeatureAdaptor.pm
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0 Bio/DB/BioSQL/SimpleValueAdaptor.pm → lib/Bio/DB/BioSQL/SimpleValueAdaptor.pm
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0 Bio/DB/BioSQL/SpeciesAdaptor.pm → lib/Bio/DB/BioSQL/SpeciesAdaptor.pm
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0 Bio/DB/BioSQL/TermAdaptor.pm → lib/Bio/DB/BioSQL/TermAdaptor.pm
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0 ...ysql/AnnotationCollectionAdaptorDriver.pm → ...ysql/AnnotationCollectionAdaptorDriver.pm
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0 ...SQL/mysql/BasePersistenceAdaptorDriver.pm → ...SQL/mysql/BasePersistenceAdaptorDriver.pm
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0 .../BioSQL/mysql/BiosequenceAdaptorDriver.pm → .../BioSQL/mysql/BiosequenceAdaptorDriver.pm
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0 Bio/DB/BioSQL/mysql/PathAdaptorDriver.pm → lib/Bio/DB/BioSQL/mysql/PathAdaptorDriver.pm
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0 Bio/DB/BioSQL/mysql/SpeciesAdaptorDriver.pm → ...o/DB/BioSQL/mysql/SpeciesAdaptorDriver.pm
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0 Bio/DB/BioSQL/mysql/TermAdaptorDriver.pm → lib/Bio/DB/BioSQL/mysql/TermAdaptorDriver.pm
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0 Bio/DB/CacheServer/SeqDB.pm → lib/Bio/DB/CacheServer/SeqDB.pm
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0 Bio/DB/DBAdaptorI.pm → lib/Bio/DB/DBAdaptorI.pm
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0 Bio/DB/DBContextI.pm → lib/Bio/DB/DBContextI.pm
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0 Bio/DB/DBD.pm → lib/Bio/DB/DBD.pm
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0 Bio/DB/DBI.pm → lib/Bio/DB/DBI.pm
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0 Bio/DB/DBI/Oracle.pm → lib/Bio/DB/DBI/Oracle.pm
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0 Bio/DB/DBI/Pg.pm → lib/Bio/DB/DBI/Pg.pm
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0 Bio/DB/DBI/Transaction.pm → lib/Bio/DB/DBI/Transaction.pm
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0 Bio/DB/DBI/TransactionListener.pm → lib/Bio/DB/DBI/TransactionListener.pm
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0 Bio/DB/DBI/base.pm → lib/Bio/DB/DBI/base.pm
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0 Bio/DB/DBI/mysql.pm → lib/Bio/DB/DBI/mysql.pm
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0 Bio/DB/EasyArgv.pm → lib/Bio/DB/EasyArgv.pm
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0 Bio/DB/PersistenceAdaptorI.pm → lib/Bio/DB/PersistenceAdaptorI.pm
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0 Bio/DB/Persistent/BioNamespace.pm → lib/Bio/DB/Persistent/BioNamespace.pm
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0 Bio/DB/Persistent/ObjectRelMapperI.pm → lib/Bio/DB/Persistent/ObjectRelMapperI.pm
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0 Bio/DB/Persistent/PersistentObject.pm → lib/Bio/DB/Persistent/PersistentObject.pm
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0 Bio/DB/Persistent/PersistentObjectFactory.pm → .../DB/Persistent/PersistentObjectFactory.pm
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0 Bio/DB/Persistent/PrimarySeq.pm → lib/Bio/DB/Persistent/PrimarySeq.pm
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0 Bio/DB/Persistent/Seq.pm → lib/Bio/DB/Persistent/Seq.pm
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0 Bio/DB/Persistent/SeqFeature.pm → lib/Bio/DB/Persistent/SeqFeature.pm
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0 Bio/DB/PersistentObjectI.pm → lib/Bio/DB/PersistentObjectI.pm
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0 Bio/DB/Query/AbstractQuery.pm → lib/Bio/DB/Query/AbstractQuery.pm
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0 Bio/DB/Query/BioQuery.pm → lib/Bio/DB/Query/BioQuery.pm
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0 Bio/DB/Query/DBQueryResult.pm → lib/Bio/DB/Query/DBQueryResult.pm
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0 Bio/DB/Query/PrebuiltResult.pm → lib/Bio/DB/Query/PrebuiltResult.pm
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0 Bio/DB/Query/QueryConstraint.pm → lib/Bio/DB/Query/QueryConstraint.pm
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0 Bio/DB/Query/QueryResultI.pm → lib/Bio/DB/Query/QueryResultI.pm
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0 Bio/DB/Query/SqlGenerator.pm → lib/Bio/DB/Query/SqlGenerator.pm
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0 Bio/DB/Query/SqlQuery.pm → lib/Bio/DB/Query/SqlQuery.pm
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0 Bio/DB/SimpleDBContext.pm → lib/Bio/DB/SimpleDBContext.pm
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