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refactoring CommandExts to handle self options

svn path=/bioperl-dev/trunk/; revision=16815
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1 parent 6001f62 commit 36d6055aada555f4ca3fcdbadba2a32fde85fa00 maj committed Feb 5, 2010
Showing with 319 additions and 247 deletions.
  1. +251 −221 Bio/Tools/Run/WrapperBase/CommandExts.pm
  2. +68 −26 Bio/Tools/WrapperMaker.pm
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