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POD tweaks

svn path=/bioperl-dev/branches/blastplus-dev-branch/; revision=16536
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maj
maj committed Dec 19, 2009
1 parent bbbeec6 commit 449a14b18c444cc0e9cedc0cc81c82e9b6a6263b
Showing with 11 additions and 1 deletion.
  1. +11 −1 lib/Bio/Tools/Run/StandAloneBlastPlus.pm
@@ -14,7 +14,7 @@
=head1 NAME
-Bio::Tools::Run::StandAloneBlastPlus - Compute with NCBI's blast+ suite *pre-ALPHA*
+Bio::Tools::Run::StandAloneBlastPlus - Compute with NCBI's blast+ suite *ALPHA*
=head1 SYNOPSIS
@@ -70,6 +70,11 @@ only. You must use this module directly.
$num_seq = $fac->db_num_sequences;
@mask_metadata = @{ $fac->db_filter_algorithms };
+ # perform blast methods
+ $result = $fac->tblastn( -query => $seqio );
+ # see Bio::Tools::Run::StandAloneBlastPlus::BlastMethods
+ # for many more details
+
=head1 DESCRIPTION
This module along with
@@ -356,6 +361,11 @@ C<stderr()>:
=back
+=head1 SEE ALSO
+
+L<Bio::Tools::Run::StandAloneBlastPlus::BlastMethods>,
+L<Bio::Tools::Run::BlastPlus>
+
=head1 FEEDBACK
=head2 Mailing Lists

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