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Uses io_lib 1.8.11 or 1.8.12; newer versions don't seem to work corre…

…ctly

svn path=/bioperl-ext/trunk/; revision=676
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commit 75c3cfa40e2a56462b2dba204d9bc1096e9fbb7f 1 parent 276ebc4
cjfields authored
Showing with 7 additions and 2 deletions.
  1. +7 −2 README
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9 README
@@ -47,7 +47,7 @@ o Notes for Bio::Ext::Align
this are
Bio::Tools::pSW - makes Smith-Waterman alignments for DNA
- Bio::Tolls::dpAlign - makes Smith-Waterman alignments for proteins
+ Bio::Tools::dpAlign - makes Smith-Waterman alignments for proteins
Bio::SearchDist - deals with EVD fitting of extreme value
distributions
@@ -63,7 +63,12 @@ o Notes for Bio::SeqIO::staden::read
io_lib "read" library. You should have this library installed prior
to installing Bio::SeqIO::staden::read, it's currently available at:
- ftp://ftp.mrc-lmb.cam.ac.uk/pub/staden/io_lib/
+ https://sourceforge.net/project/showfiles.php?group_id=100316
+
+ Currently, the Bio::SeqIO::staden::read extension only works with io_lib
+ v. 1.8.11 or 1.8.12; v. 1.9 and higher have several prototype changes in the
+ "read" library which have broken compatibility in those versions for now.
+ It is possible these changes may be addressed in the future.
Many users have noted that the io_lib install process often forgets
to install the "os.h" file along with the rest of the include files;

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