Commits on Sep 26, 2005
  1. @hyphaltip

    not needed

    svn path=/bioperl-ext/trunk/; revision=656
    hyphaltip committed Sep 26, 2005
  2. @hyphaltip

    prepping for release, better description of what else you can do to g…

    …et it to work
    
    svn path=/bioperl-ext/trunk/; revision=655
    hyphaltip committed Sep 26, 2005
Commits on Sep 10, 2005
  1. Set alignment score for SimpleAlign

    svn path=/bioperl-ext/trunk/; revision=654
    ymc committed Sep 10, 2005
Commits on Jul 22, 2005
  1. Now it is about 10% faster

    svn path=/bioperl-ext/trunk/; revision=653
    ymc committed Jul 22, 2005
Commits on May 16, 2005
  1. @amackey

    fix AV pointer casting issue, and zlib binding (again)

    svn path=/bioperl-ext/trunk/; revision=652
    amackey committed May 16, 2005
Commits on May 6, 2005
  1. Hidden Markov Model XS code

    svn path=/bioperl-ext/trunk/; revision=651
    ymc committed May 6, 2005
Commits on Nov 11, 2004
  1. @amackey

    version updates

    svn path=/bioperl-ext/trunk/; revision=650
    amackey committed Nov 11, 2004
  2. @amackey

    required to get _gzopen, etc, symbols to be available at runtime

    svn path=/bioperl-ext/trunk/; revision=649
    amackey committed Nov 11, 2004
Commits on Jun 22, 2004
  1. @hyphaltip

    better tests

    svn path=/bioperl-ext/trunk/; revision=648
    hyphaltip committed Jun 22, 2004
Commits on Jun 8, 2004
  1. fixed the call to Align_Protein_Sequences

    svn path=/bioperl-ext/trunk/; revision=647
    ymc committed Jun 8, 2004
Commits on Apr 27, 2004
  1. now we can customize the subsitution matrix for proteins

    svn path=/bioperl-ext/trunk/; revision=646
    ymc committed Apr 27, 2004
Commits on Apr 23, 2004
  1. now this is the correct copy of dpalign.h. previously, it was a dpali…

    …gn.c
    
    svn path=/bioperl-ext/trunk/; revision=645
    ymc committed Apr 23, 2004
  2. global alignment XS code

    svn path=/bioperl-ext/trunk/; revision=644
    ymc committed Apr 23, 2004
Commits on Jan 9, 2004
  1. @amackey

    modifications to make compilation more respectful of the environment

    svn path=/bioperl-ext/trunk/; revision=643
    amackey committed Jan 9, 2004
  2. @amackey

    updated iolib .h tips

    svn path=/bioperl-ext/trunk/; revision=642
    amackey committed Jan 9, 2004
Commits on Dec 8, 2003
  1. @heikkil

    reformatting, comment on Inline::MakeMaker dependency

    svn path=/bioperl-ext/trunk/; revision=641
    heikkil committed Dec 8, 2003
Commits on Dec 3, 2003
  1. @amackey

    typo

    svn path=/bioperl-ext/trunk/; revision=640
    amackey committed Dec 3, 2003
Commits on Dec 2, 2003
  1. @amackey

    updated to include info about dpAlign and common io_lib problems

    svn path=/bioperl-ext/trunk/; revision=639
    amackey committed Dec 2, 2003
Commits on Jun 5, 2003
  1. @amackey

    incorporate Yee Man Chan's alternative alignment code

    svn path=/bioperl-ext/trunk/; revision=638
    amackey committed Jun 5, 2003
Commits on Jul 12, 2002
  1. @amackey

    no need to fflush() anymore, SeqIO is handling it

    svn path=/bioperl-ext/trunk/; revision=637
    amackey committed Jul 12, 2002
Commits on Jul 11, 2002
  1. @amackey

    silenced odd eval warning

    svn path=/bioperl-ext/trunk/; revision=636
    amackey committed Jul 11, 2002
  2. @amackey

    fixed up testing to be even more quiet and not be run twice!

    svn path=/bioperl-ext/trunk/; revision=635
    amackey committed Jul 11, 2002
  3. @amackey

    updated module requirements to reflect need for Bio::SeqIO::abi, etc …

    …formats
    
    svn path=/bioperl-ext/trunk/; revision=634
    amackey committed Jul 11, 2002
  4. @amackey

    Updated README to reflect staden::read package installation, and more…

    … general info about installing the extensions
    
    svn path=/bioperl-ext/trunk/; revision=633
    amackey committed Jul 11, 2002
  5. @amackey

    slightly cleaner 'make test' output

    svn path=/bioperl-ext/trunk/; revision=632
    amackey committed Jul 11, 2002
  6. @amackey

    added global test support for ext/ stuff

    svn path=/bioperl-ext/trunk/; revision=631
    amackey committed Jul 11, 2002
Commits on Jul 10, 2002
  1. @amackey

    missing comma in Makefile.PL

    svn path=/bioperl-ext/trunk/; revision=630
    amackey committed Jul 10, 2002
  2. @amackey

    added Staden io_lib "read" library support

    svn path=/bioperl-ext/trunk/; revision=629
    amackey committed Jul 10, 2002
Commits on May 22, 2001
  1. @hyphaltip

    make proper name

    svn path=/bioperl-ext/trunk/; revision=628
    hyphaltip committed May 22, 2001
  2. @hyphaltip

    really not necessary

    svn path=/bioperl-ext/trunk/; revision=627
    hyphaltip committed May 22, 2001
Commits on Nov 21, 2000
  1. @hyphaltip

    changed to 0.07.0 version and added makefiles so install can be done …

    …from top level directory
    
    svn path=/bioperl-ext/trunk/; revision=626
    hyphaltip committed Nov 21, 2000
Commits on May 8, 2000
  1. fix in Makefile.PL suggested by Raphael Leplae

    which fixes compilation on IRIX
    
    svn path=/bioperl-ext/trunk/; revision=625
    jgrg committed May 8, 2000
Commits on Mar 15, 2000
  1. @hyphaltip

    added Makefile.PL for nice making

    svn path=/bioperl-ext/trunk/; revision=623
    hyphaltip committed Mar 15, 2000
Commits on Sep 16, 1999
  1. This commit was generated by cvs2svn to compensate for changes in r2,

    which included commits to RCS files with non-trunk default branches.
    
    svn path=/bioperl-ext/trunk/; revision=621
    birney committed Sep 16, 1999