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=head1 NAME
Bio::DB::GFF::Aggregator::ucsc_acembly -- UCSC acembly aggregator
use Bio::DB::GFF;
# Open the sequence database
my $db = Bio::DB::GFF->new( -adaptor => 'dbi:mysql',
-dsn => 'dbi:mysql:elegans42',
-aggregator => ['transcript','clone'],
Aggregator method: transcript
Main method: transcript
Sub methods: exon CDS 5'UTR 3'UTR TSS PolyA
package Bio::DB::GFF::Aggregator::ucsc_acembly;
use strict;
use base qw(Bio::DB::GFF::Aggregator);
=head2 method
Title : method
Usage : $aggregator->method
Function: return the method for the composite object
Returns : the string "acembly"
Args : none
Status : Public
sub method { 'acembly' }
=head2 part_names
Title : part_names
Usage : $aggregator->part_names
Function: return the methods for the sub-parts
Returns : empty list
Args : none
Status : Public
sub part_names {
return ();
=head2 main_name
Title : main_name
Usage : $aggregator->main_name
Function: return the method for the main component
Returns : the string "transcript:acembly"
Args : none
Status : Public
sub main_name {
return 'transcript:acembly';
=head1 BUGS
None reported.
=head1 SEE ALSO
L<Bio::DB::GFF>, L<Bio::DB::GFF::Aggregator>
=head1 AUTHOR
Allen Day E<lt>allenday@ucla.eduE<gt>.
Copyright (c) 2002 Allen Day, University of California, Los Angeles.
This library is free software; you can redistribute it and/or modify
it under the same terms as Perl itself.