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add documentation on code move

Signed-off-by: Chris Fields <cjfields@bioperl.org>
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commit 1a43589ae46f62cff3d70047745fd217b4a62d5f 1 parent f9978d6
Chris Fields authored
Showing with 12 additions and 1 deletion.
  1. +11 −1 Changes
  2. +1 −0  DEPRECATED
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12 Changes
@@ -25,7 +25,8 @@ CPAN releases are branched from 'master'.
- support for reading Maq, Sam and Bowtie files [maj]
- support for reading 454 GS Assembler (Newbler) ACE files [fangly]
- bug 2483: support for writing ACE files [Joshua Udall, fangly]
- - bug 2726: reading/writing granularity: whole scaffold or one contig at a time [Joshua Udall, fangly]
+ - bug 2726: reading/writing granularity: whole scaffold or one contig
+ at a time [Joshua Udall, fangly]
...
[Bug fixes]
@@ -33,9 +34,18 @@ CPAN releases are branched from 'master'.
for alignment slices [Ha X. Dang, cjfields]
...
+ [Deprecated]
+ * Bio::Expression modules - these were originally designed to go with the
+ bioperl-microarray suite of tools, however they have never been completed
+ and so have been removed from the distribution. The original code has
+ be moved into the inactive bioperl-microarray suite. [cjfields]
+
[Other]
* Repository moved from Subversion (SVN) to
http://github.com/bioperl/bioperl-live [cjfields]
+ * Bio::Micrarray - the tools developed for ReSeq chip analysis by Marian
+ Thieme have been moved to their own distribution (Bio-Microarray).
+ [cjfields]
1.6.1 Sept. 29, 2009 (point release)
* No change from last alpha except VERSION and doc updates [cjfields]
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1  DEPRECATED
@@ -40,3 +40,4 @@ Bio::Tools::Infernal 1.5.2 1.7 Superseded by Bio::SearchIO::infer
Bio::Tools::ERPIN 1.5.2 1.7 Superseded by Bio::SearchIO::erpin
Bio::Seq::SeqWithQuality 1.5.1 1.7 Superceded by Bio::Seq::Quality
Bio::DB::GDB 1.6 1.6 Service no longer available
+Bio::Expression - - Moved to inactive bioperl-microarray
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