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commit 3394bb6c660a42b7626861dbfdd84076bce8e47d 1 parent 99c7dec
Jason Stajich hyphaltip authored
Showing with 301 additions and 301 deletions.
  1. +2 −2 BUGS
  2. +1 −1  Bio/Align/AlignI.pm
  3. +1 −1  Bio/Align/DNAStatistics.pm
  4. +1 −1  Bio/Align/PairwiseStatistics.pm
  5. +1 −1  Bio/Align/ProteinStatistics.pm
  6. +1 −1  Bio/Align/StatisticsI.pm
  7. +1 −1  Bio/Align/Utilities.pm
  8. +1 −1  Bio/AlignIO.pm
  9. +1 −1  Bio/AlignIO/Handler/GenericAlignHandler.pm
  10. +1 −1  Bio/AlignIO/arp.pm
  11. +1 −1  Bio/AlignIO/bl2seq.pm
  12. +1 −1  Bio/AlignIO/clustalw.pm
  13. +1 −1  Bio/AlignIO/emboss.pm
  14. +1 −1  Bio/AlignIO/fasta.pm
  15. +1 −1  Bio/AlignIO/largemultifasta.pm
  16. +1 −1  Bio/AlignIO/maf.pm
  17. +1 −1  Bio/AlignIO/mase.pm
  18. +1 −1  Bio/AlignIO/mega.pm
  19. +1 −1  Bio/AlignIO/meme.pm
  20. +1 −1  Bio/AlignIO/metafasta.pm
  21. +1 −1  Bio/AlignIO/msf.pm
  22. +1 −1  Bio/AlignIO/nexml.pm
  23. +1 −1  Bio/AlignIO/nexus.pm
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  25. +1 −1  Bio/AlignIO/phylip.pm
  26. +1 −1  Bio/AlignIO/po.pm
  27. +1 −1  Bio/AlignIO/proda.pm
  28. +1 −1  Bio/AlignIO/prodom.pm
  29. +1 −1  Bio/AlignIO/psi.pm
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  31. +1 −1  Bio/AlignIO/stockholm.pm
  32. +1 −1  Bio/AlignIO/xmfa.pm
  33. +1 −1  Bio/AnalysisI.pm
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  47. +1 −1  Bio/Assembly/Contig.pm
  48. +1 −1  Bio/Assembly/ContigAnalysis.pm
  49. +1 −1  Bio/Assembly/IO.pm
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  59. +1 −1  Bio/Assembly/Tools/ContigSpectrum.pm
  60. +1 −1  Bio/Biblio.pm
  61. +1 −1  Bio/Biblio/Article.pm
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  107. +1 −1  Bio/Coordinate/Pair.pm
  108. +1 −1  Bio/Coordinate/Result.pm
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  112. +1 −1  Bio/Coordinate/Utils.pm
  113. +1 −1  Bio/DB/Ace.pm
  114. +1 −1  Bio/DB/Biblio/biofetch.pm
  115. +1 −1  Bio/DB/Biblio/eutils.pm
  116. +1 −1  Bio/DB/Biblio/soap.pm
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  121. +1 −1  Bio/DB/EMBL.pm
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  139. +1 −1  Bio/DB/HIV/HIVAnnotProcessor.pm
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  143. +1 −1  Bio/DB/MeSH.pm
  144. +1 −1  Bio/DB/NCBIHelper.pm
  145. +1 −1  Bio/DB/Query/GenBank.pm
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  147. +1 −1  Bio/DB/Query/WebQuery.pm
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  149. +1 −1  Bio/DB/RandomAccessI.pm
  150. +1 −1  Bio/DB/RefSeq.pm
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  152. +1 −1  Bio/DB/Registry.pm
  153. +1 −1  Bio/DB/SeqI.pm
  154. +1 −1  Bio/DB/SeqVersion.pm
  155. +1 −1  Bio/DB/SeqVersion/gi.pm
  156. +1 −1  Bio/DB/SwissProt.pm
  157. +1 −1  Bio/DB/TFBS.pm
  158. +1 −1  Bio/DB/TFBS/transfac_pro.pm
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  297. +1 −1  Bio/Ontology/Ontology.pm
  298. +1 −1  Bio/Ontology/OntologyEngineI.pm
  299. +1 −1  Bio/Ontology/OntologyI.pm
  300. +1 −1  Bio/Ontology/OntologyStore.pm
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4 BUGS
View
@@ -3,7 +3,7 @@
Known Bugs
Bugs are tracked at this URL:
-http://redmine.open-bio.org/projects/bioperl/
+https://redmine.open-bio.org/projects/bioperl/
Bioperl 1.6 series
=============
@@ -11,7 +11,7 @@ Bioperl 1.6 series
Though a stable release, some bugs and enhancements remain for this series
that will be addressed in future point releases. For a full list please see:
-http://redmine.open-bio.org/projects/bioperl/
+https://redmine.open-bio.org/projects/bioperl/
Bug Summary (additional info)
2  Bio/Align/AlignI.pm
View
@@ -70,7 +70,7 @@ Report bugs to the Bioperl bug tracking system to help us keep track
of the bugs and their resolution. Bug reports can be submitted via the
web:
- http://redmine.open-bio.org/projects/bioperl/
+ https://redmine.open-bio.org/projects/bioperl/
=head1 AUTHOR - Jason Stajich
2  Bio/Align/DNAStatistics.pm
View
@@ -313,7 +313,7 @@ Report bugs to the Bioperl bug tracking system to help us keep track
of the bugs and their resolution. Bug reports can be submitted via the
web:
- http://redmine.open-bio.org/projects/bioperl/
+ https://redmine.open-bio.org/projects/bioperl/
=head1 AUTHOR - Jason Stajich
2  Bio/Align/PairwiseStatistics.pm
View
@@ -58,7 +58,7 @@ Report bugs to the Bioperl bug tracking system to help us keep track
of the bugs and their resolution. Bug reports can be submitted via the
web:
- http://redmine.open-bio.org/projects/bioperl/
+ https://redmine.open-bio.org/projects/bioperl/
=head1 AUTHOR - Jason Stajich
2  Bio/Align/ProteinStatistics.pm
View
@@ -68,7 +68,7 @@ Report bugs to the Bioperl bug tracking system to help us keep track
of the bugs and their resolution. Bug reports can be submitted via the
web:
- http://redmine.open-bio.org/projects/bioperl/
+ https://redmine.open-bio.org/projects/bioperl/
=head1 AUTHOR - Jason Stajich
2  Bio/Align/StatisticsI.pm
View
@@ -51,7 +51,7 @@ Report bugs to the Bioperl bug tracking system to help us keep track
of the bugs and their resolution. Bug reports can be submitted via the
web:
- http://redmine.open-bio.org/projects/bioperl/
+ https://redmine.open-bio.org/projects/bioperl/
=head1 AUTHOR - Jason Stajich
2  Bio/Align/Utilities.pm
View
@@ -74,7 +74,7 @@ Report bugs to the Bioperl bug tracking system to help us keep track
of the bugs and their resolution. Bug reports can be submitted via the
web:
- http://redmine.open-bio.org/projects/bioperl/
+ https://redmine.open-bio.org/projects/bioperl/
=head1 AUTHOR - Jason Stajich
2  Bio/AlignIO.pm
View
@@ -254,7 +254,7 @@ Report bugs to the Bioperl bug tracking system to help us keep track
the bugs and their resolution. Bug reports can be submitted via the
web:
- http://redmine.open-bio.org/projects/bioperl/
+ https://redmine.open-bio.org/projects/bioperl/
=head1 AUTHOR - Peter Schattner
2  Bio/AlignIO/Handler/GenericAlignHandler.pm
View
@@ -562,7 +562,7 @@ Report bugs to the Bioperl bug tracking system to help us keep track
the bugs and their resolution. Bug reports can be submitted via the
web:
- http://redmine.open-bio.org/projects/bioperl/
+ https://redmine.open-bio.org/projects/bioperl/
=head1 AUTHOR - Chris Fields
2  Bio/AlignIO/arp.pm
View
@@ -77,7 +77,7 @@ Report bugs to the Bioperl bug tracking system to help us keep track
the bugs and their resolution. Bug reports can be submitted via the
web:
- http://redmine.open-bio.org/projects/bioperl/
+ https://redmine.open-bio.org/projects/bioperl/
=head1 AUTHORS
2  Bio/AlignIO/bl2seq.pm
View
@@ -87,7 +87,7 @@ Report bugs to the Bioperl bug tracking system to help us keep track
the bugs and their resolution. Bug reports can be submitted via the
web:
- http://redmine.open-bio.org/projects/bioperl/
+ https://redmine.open-bio.org/projects/bioperl/
=head1 AUTHOR - Peter Schattner
2  Bio/AlignIO/clustalw.pm
View
@@ -54,7 +54,7 @@ Report bugs to the Bioperl bug tracking system to help us keep track
the bugs and their resolution. Bug reports can be submitted via the
web:
- http://redmine.open-bio.org/projects/bioperl/
+ https://redmine.open-bio.org/projects/bioperl/
=head1 AUTHORS - Peter Schattner
2  Bio/AlignIO/emboss.pm
View
@@ -59,7 +59,7 @@ Report bugs to the Bioperl bug tracking system to help us keep track
of the bugs and their resolution. Bug reports can be submitted via the
web:
- http://redmine.open-bio.org/projects/bioperl/
+ https://redmine.open-bio.org/projects/bioperl/
=head1 AUTHOR - Jason Stajich
2  Bio/AlignIO/fasta.pm
View
@@ -41,7 +41,7 @@ Report bugs to the Bioperl bug tracking system to help us keep track
the bugs and their resolution. Bug reports can be submitted via the
web:
- http://redmine.open-bio.org/projects/bioperl/
+ https://redmine.open-bio.org/projects/bioperl/
=head1 AUTHORS
2  Bio/AlignIO/largemultifasta.pm
View
@@ -53,7 +53,7 @@ Report bugs to the Bioperl bug tracking system to help us keep track
the bugs and their resolution. Bug reports can be submitted via the
web:
- http://redmine.open-bio.org/projects/bioperl/
+ https://redmine.open-bio.org/projects/bioperl/
=head1 AUTHORS - Albert Vilella, Heikki Lehvaslaiho
2  Bio/AlignIO/maf.pm
View
@@ -64,7 +64,7 @@ Report bugs to the Bioperl bug tracking system to help us keep track
the bugs and their resolution. Bug reports can be submitted via the
web:
- http://redmine.open-bio.org/projects/bioperl/
+ https://redmine.open-bio.org/projects/bioperl/
=head1 AUTHORS - Allen Day
2  Bio/AlignIO/mase.pm
View
@@ -46,7 +46,7 @@ Report bugs to the Bioperl bug tracking system to help us keep track
the bugs and their resolution. Bug reports can be submitted via the
web:
- http://redmine.open-bio.org/projects/bioperl/
+ https://redmine.open-bio.org/projects/bioperl/
=head1 AUTHORS - Peter Schattner
2  Bio/AlignIO/mega.pm
View
@@ -59,7 +59,7 @@ Report bugs to the Bioperl bug tracking system to help us keep track
of the bugs and their resolution. Bug reports can be submitted the
web:
- http://redmine.open-bio.org/projects/bioperl/
+ https://redmine.open-bio.org/projects/bioperl/
=head1 AUTHOR - Jason Stajich
2  Bio/AlignIO/meme.pm
View
@@ -59,7 +59,7 @@ Report bugs to the Bioperl bug tracking system to help us keep track
the bugs and their resolution. Bug reports can be submitted via the
web:
- http://redmine.open-bio.org/projects/bioperl/
+ https://redmine.open-bio.org/projects/bioperl/
=head1 AUTHORS - Benjamin Berman
2  Bio/AlignIO/metafasta.pm
View
@@ -58,7 +58,7 @@ Report bugs to the Bioperl bug tracking system to help us keep track
the bugs and their resolution. Bug reports can be submitted via the
web:
- http://redmine.open-bio.org/projects/bioperl/
+ https://redmine.open-bio.org/projects/bioperl/
=head1 AUTHOR - Heikki Lehvaslaiho
2  Bio/AlignIO/msf.pm
View
@@ -45,7 +45,7 @@ Report bugs to the Bioperl bug tracking system to help us keep track
the bugs and their resolution. Bug reports can be submitted via the
web:
- http://redmine.open-bio.org/projects/bioperl/
+ https://redmine.open-bio.org/projects/bioperl/
=head1 AUTHORS - Peter Schattner
2  Bio/AlignIO/nexml.pm
View
@@ -38,7 +38,7 @@ Report bugs to the Bioperl bug tracking system to help us keep track
the bugs and their resolution. Bug reports can be submitted via the
web:
- http://redmine.open-bio.org/projects/bioperl/
+ https://redmine.open-bio.org/projects/bioperl/
=head1 AUTHORS
2  Bio/AlignIO/nexus.pm
View
@@ -49,7 +49,7 @@ Report bugs to the Bioperl bug tracking system to help us keep track
the bugs and their resolution. Bug reports can be submitted via the
web:
- http://redmine.open-bio.org/projects/bioperl/
+ https://redmine.open-bio.org/projects/bioperl/
=head1 AUTHORS - Heikki Lehvaslaiho
2  Bio/AlignIO/pfam.pm
View
@@ -46,7 +46,7 @@ Report bugs to the Bioperl bug tracking system to help us keep track
the bugs and their resolution. Bug reports can be submitted via the
web:
- http://redmine.open-bio.org/projects/bioperl/
+ https://redmine.open-bio.org/projects/bioperl/
=head1 AUTHORS - Peter Schattner
2  Bio/AlignIO/phylip.pm
View
@@ -71,7 +71,7 @@ Report bugs to the Bioperl bug tracking system to help us keep track
the bugs and their resolution. Bug reports can be submitted via the
web:
- http://redmine.open-bio.org/projects/bioperl/
+ https://redmine.open-bio.org/projects/bioperl/
=head1 AUTHORS - Heikki Lehvaslaiho and Jason Stajich
2  Bio/AlignIO/po.pm
View
@@ -46,7 +46,7 @@ Report bugs to the Bioperl bug tracking system to help us keep track
the bugs and their resolution. Bug reports can be submitted via the
web:
- http://redmine.open-bio.org/projects/bioperl/
+ https://redmine.open-bio.org/projects/bioperl/
=head1 AUTHORS - Matthew Betts
2  Bio/AlignIO/proda.pm
View
@@ -56,7 +56,7 @@ Report bugs to the Bioperl bug tracking system to help us keep track
the bugs and their resolution. Bug reports can be submitted via the
web:
- http://redmine.open-bio.org/projects/bioperl/
+ https://redmine.open-bio.org/projects/bioperl/
=head1 AUTHORS - Albert Vilella
2  Bio/AlignIO/prodom.pm
View
@@ -46,7 +46,7 @@ Report bugs to the Bioperl bug tracking system to help us keep track
the bugs and their resolution. Bug reports can be submitted via the
web:
- http://redmine.open-bio.org/projects/bioperl/
+ https://redmine.open-bio.org/projects/bioperl/
=head1 AUTHORS - Peter Schattner
2  Bio/AlignIO/psi.pm
View
@@ -51,7 +51,7 @@ Report bugs to the Bioperl bug tracking system to help us keep track
of the bugs and their resolution. Bug reports can be submitted via
the web:
- http://redmine.open-bio.org/projects/bioperl/
+ https://redmine.open-bio.org/projects/bioperl/
=head1 AUTHOR - Jason Stajich
2  Bio/AlignIO/selex.pm
View
@@ -55,7 +55,7 @@ Report bugs to the Bioperl bug tracking system to help us keep track
the bugs and their resolution. Bug reports can be submitted via the
web:
- http://redmine.open-bio.org/projects/bioperl/
+ https://redmine.open-bio.org/projects/bioperl/
=head1 AUTHORS - Peter Schattner
2  Bio/AlignIO/stockholm.pm
View
@@ -198,7 +198,7 @@ Report bugs to the Bioperl bug tracking system to help us keep track
the bugs and their resolution. Bug reports can be submitted via the
web:
- http://redmine.open-bio.org/projects/bioperl/
+ https://redmine.open-bio.org/projects/bioperl/
=head1 AUTHORS - Chris Fields, Peter Schattner
2  Bio/AlignIO/xmfa.pm
View
@@ -49,7 +49,7 @@ Report bugs to the Bioperl bug tracking system to help us keep track
the bugs and their resolution. Bug reports can be submitted via the
web:
- http://redmine.open-bio.org/projects/bioperl/
+ https://redmine.open-bio.org/projects/bioperl/
=head1 AUTHORS
2  Bio/AnalysisI.pm
View
@@ -55,7 +55,7 @@ Report bugs to the Bioperl bug tracking system to help us keep track
of the bugs and their resolution. Bug reports can be submitted via the
web:
- http://redmine.open-bio.org/projects/bioperl/
+ https://redmine.open-bio.org/projects/bioperl/
=head1 AUTHOR
2  Bio/AnalysisParserI.pm
View
@@ -108,7 +108,7 @@ Report bugs to the Bioperl bug tracking system to help us keep track
the bugs and their resolution. Bug reports can be submitted via the
web:
- http://redmine.open-bio.org/projects/bioperl/
+ https://redmine.open-bio.org/projects/bioperl/
=head1 AUTHOR - Steve Chervitz, Jason Stajich, Hilmar Lapp
2  Bio/AnalysisResultI.pm
View
@@ -68,7 +68,7 @@ with code and data examples if at all possible.
Report bugs to the Bioperl bug tracking system to help us keep track
the bugs and their resolution. Bug reports can be submitted via the web:
- http://redmine.open-bio.org/projects/bioperl/
+ https://redmine.open-bio.org/projects/bioperl/
=head1 AUTHOR - Steve Chervitz, Hilmar Lapp
2  Bio/AnnotatableI.pm
View
@@ -62,7 +62,7 @@ Report bugs to the Bioperl bug tracking system to help us keep track
of the bugs and their resolution. Bug reports can be submitted via the
web:
- http://redmine.open-bio.org/projects/bioperl/
+ https://redmine.open-bio.org/projects/bioperl/
=head1 AUTHOR
2  Bio/Annotation/AnnotationFactory.pm
View
@@ -72,7 +72,7 @@ Report bugs to the Bioperl bug tracking system to help us keep track
of the bugs and their resolution. Bug reports can be submitted via
the web:
- http://redmine.open-bio.org/projects/bioperl/
+ https://redmine.open-bio.org/projects/bioperl/
=head1 AUTHOR - Hilmar Lapp
2  Bio/Annotation/Collection.pm
View
@@ -66,7 +66,7 @@ Report bugs to the Bioperl bug tracking system to help us keep track
the bugs and their resolution. Bug reports can be submitted via
the web:
- http://redmine.open-bio.org/projects/bioperl/
+ https://redmine.open-bio.org/projects/bioperl/
=head1 AUTHOR - Ewan Birney
2  Bio/Annotation/OntologyTerm.pm
View
@@ -85,7 +85,7 @@ Report bugs to the Bioperl bug tracking system to help us keep track
the bugs and their resolution. Bug reports can be submitted via
the web:
- http://redmine.open-bio.org/projects/bioperl/
+ https://redmine.open-bio.org/projects/bioperl/
=head1 AUTHOR - Hilmar Lapp
2  Bio/Annotation/Relation.pm
View
@@ -57,7 +57,7 @@ Report bugs to the Bioperl bug tracking system to help us keep track
the bugs and their resolution. Bug reports can be submitted via
the web:
- http://redmine.open-bio.org/projects/bioperl/
+ https://redmine.open-bio.org/projects/bioperl/
=head1 AUTHOR - Mira Han
2  Bio/Annotation/SimpleValue.pm
View
@@ -56,7 +56,7 @@ Report bugs to the Bioperl bug tracking system to help us keep track
the bugs and their resolution. Bug reports can be submitted via
the web:
- http://redmine.open-bio.org/projects/bioperl/
+ https://redmine.open-bio.org/projects/bioperl/
=head1 AUTHOR - Ewan Birney
2  Bio/Annotation/StructuredValue.pm
View
@@ -65,7 +65,7 @@ Report bugs to the Bioperl bug tracking system to help us keep track
the bugs and their resolution. Bug reports can be submitted via
or the web:
- http://redmine.open-bio.org/projects/bioperl/
+ https://redmine.open-bio.org/projects/bioperl/
=head1 AUTHOR - Hilmar Lapp
2  Bio/Annotation/TagTree.pm
View
@@ -99,7 +99,7 @@ Report bugs to the Bioperl bug tracking system to help us keep track
the bugs and their resolution. Bug reports can be submitted via
or the web:
- http://redmine.open-bio.org/projects/bioperl/
+ https://redmine.open-bio.org/projects/bioperl/
=head1 AUTHOR
2  Bio/Annotation/TypeManager.pm
View
@@ -60,7 +60,7 @@ Report bugs to the Bioperl bug tracking system to help us keep track
the bugs and their resolution.
Bug reports can be submitted via the web:
- http://redmine.open-bio.org/projects/bioperl/
+ https://redmine.open-bio.org/projects/bioperl/
=head1 AUTHOR - Ewan Birney
2  Bio/AnnotationCollectionI.pm
View
@@ -112,7 +112,7 @@ Report bugs to the Bioperl bug tracking system to help us keep track
the bugs and their resolution. Bug reports can be submitted via the
web:
- http://redmine.open-bio.org/projects/bioperl/
+ https://redmine.open-bio.org/projects/bioperl/
=head1 AUTHOR - Ewan Birney
2  Bio/AnnotationI.pm
View
@@ -100,7 +100,7 @@ Report bugs to the Bioperl bug tracking system to help us keep track
the bugs and their resolution. Bug reports can be submitted via the
web:
- http://redmine.open-bio.org/projects/bioperl/
+ https://redmine.open-bio.org/projects/bioperl/
=head1 AUTHOR - Ewan Birney
2  Bio/Assembly/Contig.pm
View
@@ -201,7 +201,7 @@ Report bugs to the Bioperl bug tracking system to help us keep track
the bugs and their resolution. Bug reports can be submitted via the
web:
- http://redmine.open-bio.org/projects/bioperl/
+ https://redmine.open-bio.org/projects/bioperl/
=head1 AUTHOR - Robson Francisco de Souza
2  Bio/Assembly/ContigAnalysis.pm
View
@@ -65,7 +65,7 @@ Report bugs to the Bioperl bug tracking system to help us keep track
the bugs and their resolution. Bug reports can be submitted via the
web:
- http://redmine.open-bio.org/projects/bioperl/
+ https://redmine.open-bio.org/projects/bioperl/
=head1 AUTHOR - Robson Francisco de Souza
2  Bio/Assembly/IO.pm
View
@@ -69,7 +69,7 @@ Report bugs to the Bioperl bug tracking system to help us keep track
the bugs and their resolution. Bug reports can be submitted via the
web:
- http://redmine.open-bio.org/projects/bioperl/
+ https://redmine.open-bio.org/projects/bioperl/
=head1 AUTHOR
2  Bio/Assembly/IO/ace.pm
View
@@ -136,7 +136,7 @@ with code and data examples if at all possible.
Report bugs to the Bioperl bug tracking system to help us keep track
the bugs and their resolution. Bug reports can be submitted via the web:
- http://redmine.open-bio.org/projects/bioperl/
+ https://redmine.open-bio.org/projects/bioperl/
=head1 AUTHOR - Robson Francisco de Souza
2  Bio/Assembly/IO/bowtie.pm
View
@@ -85,7 +85,7 @@ Report bugs to the Bioperl bug tracking system to help us keep track
of the bugs and their resolution. Bug reports can be submitted via
the web:
- http://redmine.open-bio.org/projects/bioperl/
+ https://redmine.open-bio.org/projects/bioperl/
=head1 AUTHOR - Dan Kortschak
2  Bio/Assembly/IO/maq.pm
View
@@ -117,7 +117,7 @@ the bugs and their resolution. Bug reports can be submitted via email
or the web:
bioperl-bugs@bio.perl.org
- http://redmine.open-bio.org/projects/bioperl/
+ https://redmine.open-bio.org/projects/bioperl/
=head1 AUTHOR - Mark A. Jensen
2  Bio/Assembly/IO/phrap.pm
View
@@ -139,7 +139,7 @@ Report bugs to the Bioperl bug tracking system to help us keep track
the bugs and their resolution. Bug reports can be submitted via the
web:
- http://redmine.open-bio.org/projects/bioperl/
+ https://redmine.open-bio.org/projects/bioperl/
=head1 AUTHOR - Robson Francisco de Souza
2  Bio/Assembly/IO/sam.pm
View
@@ -146,7 +146,7 @@ Report bugs to the Bioperl bug tracking system to help us keep track
of the bugs and their resolution. Bug reports can be submitted via
the web:
- http://redmine.open-bio.org/projects/bioperl/
+ https://redmine.open-bio.org/projects/bioperl/
=head1 AUTHOR - Mark A. Jensen
2  Bio/Assembly/IO/tigr.pm
View
@@ -212,7 +212,7 @@ the bugs and their resolution. Bug reports can be submitted via email
or the web:
bioperl-bugs@bio.perl.org
- http://redmine.open-bio.org/projects/bioperl/
+ https://redmine.open-bio.org/projects/bioperl/
=head1 AUTHOR - Florent E Angly
2  Bio/Assembly/Scaffold.pm
View
@@ -60,7 +60,7 @@ Report bugs to the Bioperl bug tracking system to help us keep track
the bugs and their resolution. Bug reports can be submitted via the
web:
- http://redmine.open-bio.org/projects/bioperl/
+ https://redmine.open-bio.org/projects/bioperl/
=head1 AUTHOR - Robson Francisco de Souza
2  Bio/Assembly/ScaffoldI.pm
View
@@ -52,7 +52,7 @@ Report bugs to the Bioperl bug tracking system to help us keep track
the bugs and their resolution. Bug reports can be submitted via the
web:
- http://redmine.open-bio.org/projects/bioperl/
+ https://redmine.open-bio.org/projects/bioperl/
=head1 AUTHOR - Robson Francisco de Souza
2  Bio/Assembly/Singlet.pm
View
@@ -70,7 +70,7 @@ Report bugs to the Bioperl bug tracking system to help us keep track
the bugs and their resolution. Bug reports can be submitted via the
web:
- http://redmine.open-bio.org/projects/bioperl/
+ https://redmine.open-bio.org/projects/bioperl/
=head1 AUTHOR - Chad S. Matsalla
2  Bio/Assembly/Tools/ContigSpectrum.pm
View
@@ -185,7 +185,7 @@ the bugs and their resolution. Bug reports can be submitted via email
or the web:
bioperl-bugs@bio.perl.org
- http://redmine.open-bio.org/projects/bioperl/
+ https://redmine.open-bio.org/projects/bioperl/
=head1 AUTHOR - Florent E Angly
2  Bio/Biblio.pm
View
@@ -151,7 +151,7 @@ Report bugs to the Bioperl bug tracking system to help us keep track
of the bugs and their resolution. Bug reports can be submitted via the
web:
- http://redmine.open-bio.org/projects/bioperl/
+ https://redmine.open-bio.org/projects/bioperl/
=head1 AUTHOR
2  Bio/Biblio/Article.pm
View
@@ -81,7 +81,7 @@ Report bugs to the Bioperl bug tracking system to help us keep track
of the bugs and their resolution. Bug reports can be submitted via the
web:
- http://redmine.open-bio.org/projects/bioperl/
+ https://redmine.open-bio.org/projects/bioperl/
=head1 AUTHORS
2  Bio/Biblio/BiblioBase.pm
View
@@ -72,7 +72,7 @@ Report bugs to the Bioperl bug tracking system to help us keep track
of the bugs and their resolution. Bug reports can be submitted via the
web:
- http://redmine.open-bio.org/projects/bioperl/
+ https://redmine.open-bio.org/projects/bioperl/
=head1 AUTHOR
2  Bio/Biblio/Book.pm
View
@@ -83,7 +83,7 @@ Report bugs to the Bioperl bug tracking system to help us keep track
of the bugs and their resolution. Bug reports can be submitted via the
web:
- http://redmine.open-bio.org/projects/bioperl/
+ https://redmine.open-bio.org/projects/bioperl/
=head1 AUTHORS
2  Bio/Biblio/BookArticle.pm
View
@@ -77,7 +77,7 @@ Report bugs to the Bioperl bug tracking system to help us keep track
of the bugs and their resolution. Bug reports can be submitted via the
web:
- http://redmine.open-bio.org/projects/bioperl/
+ https://redmine.open-bio.org/projects/bioperl/
=head1 AUTHORS
2  Bio/Biblio/IO.pm
View
@@ -192,7 +192,7 @@ Report bugs to the Bioperl bug tracking system to help us keep track
the bugs and their resolution. Bug reports can be submitted via the
web:
- http://redmine.open-bio.org/projects/bioperl/
+ https://redmine.open-bio.org/projects/bioperl/
=head1 AUTHOR
2  Bio/Biblio/IO/medline2ref.pm
View
@@ -48,7 +48,7 @@ Report bugs to the Bioperl bug tracking system to help us keep track
of the bugs and their resolution. Bug reports can be submitted via the
web:
- http://redmine.open-bio.org/projects/bioperl/
+ https://redmine.open-bio.org/projects/bioperl/
=head1 AUTHOR
2  Bio/Biblio/IO/medlinexml.pm
View
@@ -54,7 +54,7 @@ Report bugs to the Bioperl bug tracking system to help us keep track
of the bugs and their resolution. Bug reports can be submitted via the
web:
- http://redmine.open-bio.org/projects/bioperl/
+ https://redmine.open-bio.org/projects/bioperl/
=head1 AUTHOR
2  Bio/Biblio/IO/pubmed2ref.pm
View
@@ -48,7 +48,7 @@ Report bugs to the Bioperl bug tracking system to help us keep track
of the bugs and their resolution. Bug reports can be submitted via the
web:
- http://redmine.open-bio.org/projects/bioperl/
+ https://redmine.open-bio.org/projects/bioperl/
=head1 AUTHOR
2  Bio/Biblio/IO/pubmedxml.pm
View
@@ -54,7 +54,7 @@ Report bugs to the Bioperl bug tracking system to help us keep track
of the bugs and their resolution. Bug reports can be submitted via the
web:
- http://redmine.open-bio.org/projects/bioperl/
+ https://redmine.open-bio.org/projects/bioperl/
=head1 AUTHOR
2  Bio/Biblio/Journal.pm
View
@@ -79,7 +79,7 @@ Report bugs to the Bioperl bug tracking system to help us keep track
of the bugs and their resolution. Bug reports can be submitted via the
web:
- http://redmine.open-bio.org/projects/bioperl/
+ https://redmine.open-bio.org/projects/bioperl/
=head1 AUTHORS
2  Bio/Biblio/JournalArticle.pm
View
@@ -80,7 +80,7 @@ Report bugs to the Bioperl bug tracking system to help us keep track
of the bugs and their resolution. Bug reports can be submitted via the
web:
- http://redmine.open-bio.org/projects/bioperl/
+ https://redmine.open-bio.org/projects/bioperl/
=head1 AUTHORS
2  Bio/Biblio/MedlineArticle.pm
View
@@ -121,7 +121,7 @@ Report bugs to the Bioperl bug tracking system to help us keep track
of the bugs and their resolution. Bug reports can be submitted via the
web:
- http://redmine.open-bio.org/projects/bioperl/
+ https://redmine.open-bio.org/projects/bioperl/
=head1 AUTHORS
2  Bio/Biblio/MedlineBook.pm
View
@@ -77,7 +77,7 @@ Report bugs to the Bioperl bug tracking system to help us keep track
of the bugs and their resolution. Bug reports can be submitted via the
web:
- http://redmine.open-bio.org/projects/bioperl/
+ https://redmine.open-bio.org/projects/bioperl/
=head1 AUTHORS
2  Bio/Biblio/MedlineBookArticle.pm
View
@@ -77,7 +77,7 @@ Report bugs to the Bioperl bug tracking system to help us keep track
of the bugs and their resolution. Bug reports can be submitted via the
web:
- http://redmine.open-bio.org/projects/bioperl/
+ https://redmine.open-bio.org/projects/bioperl/
=head1 AUTHORS
2  Bio/Biblio/MedlineJournal.pm
View
@@ -80,7 +80,7 @@ Report bugs to the Bioperl bug tracking system to help us keep track
of the bugs and their resolution. Bug reports can be submitted via the
web:
- http://redmine.open-bio.org/projects/bioperl/
+ https://redmine.open-bio.org/projects/bioperl/
=head1 AUTHORS
2  Bio/Biblio/MedlineJournalArticle.pm
View
@@ -80,7 +80,7 @@ Report bugs to the Bioperl bug tracking system to help us keep track
of the bugs and their resolution. Bug reports can be submitted via the
web:
- http://redmine.open-bio.org/projects/bioperl/
+ https://redmine.open-bio.org/projects/bioperl/
=head1 AUTHORS
2  Bio/Biblio/Organisation.pm
View
@@ -74,7 +74,7 @@ Report bugs to the Bioperl bug tracking system to help us keep track
of the bugs and their resolution. Bug reports can be submitted via the
web:
- http://redmine.open-bio.org/projects/bioperl/
+ https://redmine.open-bio.org/projects/bioperl/
=head1 AUTHORS
2  Bio/Biblio/Patent.pm
View
@@ -79,7 +79,7 @@ Report bugs to the Bioperl bug tracking system to help us keep track
of the bugs and their resolution. Bug reports can be submitted via the
web:
- http://redmine.open-bio.org/projects/bioperl/
+ https://redmine.open-bio.org/projects/bioperl/
=head1 AUTHORS
2  Bio/Biblio/Person.pm
View
@@ -83,7 +83,7 @@ Report bugs to the Bioperl bug tracking system to help us keep track
of the bugs and their resolution. Bug reports can be submitted via the
web:
- http://redmine.open-bio.org/projects/bioperl/
+ https://redmine.open-bio.org/projects/bioperl/
=head1 AUTHORS
2  Bio/Biblio/Proceeding.pm
View
@@ -74,7 +74,7 @@ Report bugs to the Bioperl bug tracking system to help us keep track
of the bugs and their resolution. Bug reports can be submitted via the
web:
- http://redmine.open-bio.org/projects/bioperl/
+ https://redmine.open-bio.org/projects/bioperl/
=head1 AUTHORS
2  Bio/Biblio/Provider.pm
View
@@ -76,7 +76,7 @@ Report bugs to the Bioperl bug tracking system to help us keep track
of the bugs and their resolution. Bug reports can be submitted via the
web:
- http://redmine.open-bio.org/projects/bioperl/
+ https://redmine.open-bio.org/projects/bioperl/
=head1 AUTHORS
2  Bio/Biblio/PubmedArticle.pm
View
@@ -85,7 +85,7 @@ Report bugs to the Bioperl bug tracking system to help us keep track
of the bugs and their resolution. Bug reports can be submitted via the
web:
- http://redmine.open-bio.org/projects/bioperl/
+ https://redmine.open-bio.org/projects/bioperl/
=head1 AUTHOR
2  Bio/Biblio/PubmedBookArticle.pm
View
@@ -77,7 +77,7 @@ Report bugs to the Bioperl bug tracking system to help us keep track
of the bugs and their resolution. Bug reports can be submitted via the
web:
- http://redmine.open-bio.org/projects/bioperl/
+ https://redmine.open-bio.org/projects/bioperl/
=head1 AUTHOR
2  Bio/Biblio/PubmedJournalArticle.pm
View
@@ -90,7 +90,7 @@ Report bugs to the Bioperl bug tracking system to help us keep track
of the bugs and their resolution. Bug reports can be submitted via the
web:
- http://redmine.open-bio.org/projects/bioperl/
+ https://redmine.open-bio.org/projects/bioperl/
=head1 AUTHOR
2  Bio/Biblio/Ref.pm
View
@@ -104,7 +104,7 @@ Report bugs to the Bioperl bug tracking system to help us keep track
of the bugs and their resolution. Bug reports can be submitted via the
web:
- http://redmine.open-bio.org/projects/bioperl/
+ https://redmine.open-bio.org/projects/bioperl/
=head1 AUTHORS
2  Bio/Biblio/Service.pm
View
@@ -74,7 +74,7 @@ Report bugs to the Bioperl bug tracking system to help us keep track
of the bugs and their resolution. Bug reports can be submitted via the
web:
- http://redmine.open-bio.org/projects/bioperl/
+ https://redmine.open-bio.org/projects/bioperl/
=head1 AUTHORS
2  Bio/Biblio/TechReport.pm
View
@@ -75,7 +75,7 @@ Report bugs to the Bioperl bug tracking system to help us keep track
of the bugs and their resolution. Bug reports can be submitted via the
web:
- http://redmine.open-bio.org/projects/bioperl/
+ https://redmine.open-bio.org/projects/bioperl/
=head1 AUTHORS
2  Bio/Biblio/Thesis.pm
View
@@ -74,7 +74,7 @@ Report bugs to the Bioperl bug tracking system to help us keep track
of the bugs and their resolution. Bug reports can be submitted via the
web:
- http://redmine.open-bio.org/projects/bioperl/
+ https://redmine.open-bio.org/projects/bioperl/
=head1 AUTHORS
2  Bio/Biblio/WebResource.pm
View
@@ -79,7 +79,7 @@ Report bugs to the Bioperl bug tracking system to help us keep track
of the bugs and their resolution. Bug reports can be submitted or the
web:
- http://redmine.open-bio.org/projects/bioperl/
+ https://redmine.open-bio.org/projects/bioperl/
=head1 AUTHORS
2  Bio/Cluster/ClusterFactory.pm
View
@@ -71,7 +71,7 @@ Report bugs to the Bioperl bug tracking system to help us keep track
of the bugs and their resolution. Bug reports can be submitted via the
web:
- http://redmine.open-bio.org/projects/bioperl/
+ https://redmine.open-bio.org/projects/bioperl/
=head1 AUTHOR - Hilmar Lapp
2  Bio/Cluster/FamilyI.pm
View
@@ -59,7 +59,7 @@ Report bugs to the Bioperl bug tracking system to help us keep track
of the bugs and their resolution. Bug reports can be submitted via the
web:
- http://redmine.open-bio.org/projects/bioperl/
+ https://redmine.open-bio.org/projects/bioperl/
=head1 AUTHOR - Shawn Hoon
2  Bio/Cluster/SequenceFamily.pm
View
@@ -85,7 +85,7 @@ Report bugs to the Bioperl bug tracking system to help us keep track
the bugs and their resolution. Bug reports can be submitted via the
web:
- http://redmine.open-bio.org/projects/bioperl/
+ https://redmine.open-bio.org/projects/bioperl/
=head1 AUTHOR - Shawn Hoon
2  Bio/Cluster/UniGene.pm
View
@@ -161,7 +161,7 @@ Report bugs to the Bioperl bug tracking system to help us keep track
the bugs and their resolution. Bug reports can be submitted via the
web:
- http://redmine.open-bio.org/projects/bioperl/
+ https://redmine.open-bio.org/projects/bioperl/
=head1 AUTHOR - Andrew Macgregor
2  Bio/Cluster/UniGeneI.pm
View
@@ -67,7 +67,7 @@ Report bugs to the Bioperl bug tracking system to help us keep track
the bugs and their resolution. Bug reports can be submitted via the
web:
- http://redmine.open-bio.org/projects/bioperl/
+ https://redmine.open-bio.org/projects/bioperl/
=head1 AUTHOR - Andrew Macgregor
2  Bio/ClusterI.pm
View
@@ -59,7 +59,7 @@ Report bugs to the Bioperl bug tracking system to help us keep track
of the bugs and their resolution. Bug reports can be submitted via the
web:
- http://redmine.open-bio.org/projects/bioperl/
+ https://redmine.open-bio.org/projects/bioperl/
=head1 AUTHOR - Shawn Hoon
2  Bio/ClusterIO.pm
View
@@ -124,7 +124,7 @@ Report bugs to the Bioperl bug tracking system to help us keep track
the bugs and their resolution. Bug reports can be submitted via the
web:
- http://redmine.open-bio.org/projects/bioperl/
+ https://redmine.open-bio.org/projects/bioperl/
=head1 AUTHOR - Andrew Macgregor
2  Bio/ClusterIO/dbsnp.pm
View
@@ -47,7 +47,7 @@ Report bugs to the Bioperl bug tracking system to help us keep track
the bugs and their resolution. Bug reports can be submitted via the
web:
- http://redmine.open-bio.org/projects/bioperl/
+ https://redmine.open-bio.org/projects/bioperl/
=head1 AUTHOR
2  Bio/ClusterIO/unigene.pm
View
@@ -57,7 +57,7 @@ Report bugs to the Bioperl bug tracking system to help us keep track
the bugs and their resolution. Bug reports can be submitted via the
web:
- http://redmine.open-bio.org/projects/bioperl/
+ https://redmine.open-bio.org/projects/bioperl/
=head1 AUTHORS - Andrew Macgregor
2  Bio/CodonUsage/IO.pm
View
@@ -69,7 +69,7 @@ Report bugs to the Bioperl bug tracking system to help us keep track
the bugs and their resolution. Bug reports can be submitted via the
web:
- http://redmine.open-bio.org/projects/bioperl/
+ https://redmine.open-bio.org/projects/bioperl/
=head1 AUTHORS
2  Bio/CodonUsage/Table.pm
View
@@ -92,7 +92,7 @@ Report bugs to the Bioperl bug tracking system to help us keep track
the bugs and their resolution. Bug reports can be submitted via the
web:
- http://redmine.open-bio.org/projects/bioperl/
+ https://redmine.open-bio.org/projects/bioperl/
=head1 AUTHORS
2  Bio/Coordinate/Chain.pm
View
@@ -81,7 +81,7 @@ Report bugs to the Bioperl bug tracking system to help us keep track
the bugs and their resolution. Bug reports can be submitted via the
web:
- http://redmine.open-bio.org/projects/bioperl/
+ https://redmine.open-bio.org/projects/bioperl/
=head1 AUTHOR - Heikki Lehvaslaiho
2  Bio/Coordinate/Collection.pm
View
@@ -82,7 +82,7 @@ report bugs to the Bioperl bug tracking system to help us keep track
the bugs and their resolution. Bug reports can be submitted via the
web:
- http://redmine.open-bio.org/projects/bioperl/
+ https://redmine.open-bio.org/projects/bioperl/
=head1 AUTHOR - Heikki Lehvaslaiho
2  Bio/Coordinate/ExtrapolatingPair.pm
View
@@ -84,7 +84,7 @@ report bugs to the Bioperl bug tracking system to help us keep track
the bugs and their resolution. Bug reports can be submitted via the
web:
- http://redmine.open-bio.org/projects/bioperl/
+ https://redmine.open-bio.org/projects/bioperl/
=head1 AUTHOR - Heikki Lehvaslaiho
2  Bio/Coordinate/GeneMapper.pm
View
@@ -135,7 +135,7 @@ Report bugs to the Bioperl bug tracking system to help us keep track
the bugs and their resolution. Bug reports can be submitted via the
web:
- http://redmine.open-bio.org/projects/bioperl/
+ https://redmine.open-bio.org/projects/bioperl/
=head1 AUTHOR - Heikki Lehvaslaiho
2  Bio/Coordinate/Graph.pm
View
@@ -131,7 +131,7 @@ report bugs to the Bioperl bug tracking system to help us keep track
the bugs and their resolution. Bug reports can be submitted via the
web:
- http://redmine.open-bio.org/projects/bioperl/
+ https://redmine.open-bio.org/projects/bioperl/
=head1 AUTHOR - Heikki Lehvaslaiho
2  Bio/Coordinate/MapperI.pm
View
@@ -52,7 +52,7 @@ report bugs to the Bioperl bug tracking system to help us keep track
the bugs and their resolution. Bug reports can be submitted via the
web:
- http://redmine.open-bio.org/projects/bioperl/
+ https://redmine.open-bio.org/projects/bioperl/
=head1 AUTHOR - Heikki Lehvaslaiho
2  Bio/Coordinate/Pair.pm
View
@@ -84,7 +84,7 @@ report bugs to the Bioperl bug tracking system to help us keep track
the bugs and their resolution. Bug reports can be submitted via the
web:
- http://redmine.open-bio.org/projects/bioperl/
+ https://redmine.open-bio.org/projects/bioperl/
=head1 AUTHOR - Heikki Lehvaslaiho
2  Bio/Coordinate/Result.pm
View
@@ -60,7 +60,7 @@ report bugs to the Bioperl bug tracking system to help us keep track
the bugs and their resolution. Bug reports can be submitted via the
web:
- http://redmine.open-bio.org/projects/bioperl/
+ https://redmine.open-bio.org/projects/bioperl/
=head1 AUTHOR - Heikki Lehvaslaiho
2  Bio/Coordinate/Result/Gap.pm
View
@@ -54,7 +54,7 @@ Report bugs to the Bioperl bug tracking system to help us keep track
the bugs and their resolution. Bug reports can be submitted via the
web:
- http://redmine.open-bio.org/projects/bioperl/
+ https://redmine.open-bio.org/projects/bioperl/
=head1 AUTHOR - Heikki Lehvaslaiho
2  Bio/Coordinate/Result/Match.pm
View
@@ -54,7 +54,7 @@ Report bugs to the Bioperl bug tracking system to help us keep track
the bugs and their resolution. Bug reports can be submitted via the
web:
- http://redmine.open-bio.org/projects/bioperl/
+ https://redmine.open-bio.org/projects/bioperl/
=head1 AUTHOR - Heikki Lehvaslaiho
2  Bio/Coordinate/ResultI.pm
View
@@ -52,7 +52,7 @@ report bugs to the Bioperl bug tracking system to help us keep track
the bugs and their resolution. Bug reports can be submitted via the
web:
- http://redmine.open-bio.org/projects/bioperl/
+ https://redmine.open-bio.org/projects/bioperl/
=head1 AUTHOR - Heikki Lehvaslaiho
2  Bio/Coordinate/Utils.pm
View
@@ -67,7 +67,7 @@ Report bugs to the Bioperl bug tracking system to help us keep track
the bugs and their resolution. Bug reports can be submitted via the
web:
- http://redmine.open-bio.org/projects/bioperl/
+ https://redmine.open-bio.org/projects/bioperl/
=head1 AUTHOR - Heikki Lehvaslaiho
2  Bio/DB/Ace.pm
View
@@ -79,7 +79,7 @@ Report bugs to the Bioperl bug tracking system to help us keep track
the bugs and their resolution. Bug reports can be submitted via the
web:
- http://redmine.open-bio.org/projects/bioperl/
+ https://redmine.open-bio.org/projects/bioperl/
=head1 AUTHOR - Ewan Birney
2  Bio/DB/Biblio/biofetch.pm
View
@@ -61,7 +61,7 @@ Report bugs to the Bioperl bug tracking system to help us keep track
of the bugs and their resolution. Bug reports can be submitted via the
web:
- http://redmine.open-bio.org/projects/bioperl/
+ https://redmine.open-bio.org/projects/bioperl/
=head1 AUTHOR
2  Bio/DB/Biblio/eutils.pm
View
@@ -64,7 +64,7 @@ Report bugs to the Bioperl bug tracking system to help us keep track
of the bugs and their resolution. Bug reports can be submitted via
the web:
- http://redmine.open-bio.org/projects/bioperl/
+ https://redmine.open-bio.org/projects/bioperl/
=head1 AUTHOR
2  Bio/DB/Biblio/soap.pm
View
@@ -55,7 +55,7 @@ Report bugs to the Bioperl bug tracking system to help us keep track
of the bugs and their resolution. Bug reports can be submitted via the
web:
- http://redmine.open-bio.org/projects/bioperl/
+ https://redmine.open-bio.org/projects/bioperl/
=head1 AUTHOR
2  Bio/DB/BiblioI.pm
View
@@ -60,7 +60,7 @@ Report bugs to the Bioperl bug tracking system to help us keep track
of the bugs and their resolution. Bug reports can be submitted via the
web:
- http://redmine.open-bio.org/projects/bioperl/
+ https://redmine.open-bio.org/projects/bioperl/
=head1 AUTHOR
2  Bio/DB/BioFetch.pm
View
@@ -85,7 +85,7 @@ Report bugs to the Bioperl bug tracking system to help us keep track
the bugs and their resolution. Bug reports can be submitted via the
web:
- http://redmine.open-bio.org/projects/bioperl/
+ https://redmine.open-bio.org/projects/bioperl/
=head1 AUTHOR - Lincoln Stein
2  Bio/DB/CUTG.pm
View
@@ -81,7 +81,7 @@ with code and data examples if at all possible.
Report bugs to the Bioperl bug tracking system to help us keep track
the bugs and their resolution. Bug reports can be submitted via the web:
- http://redmine.open-bio.org/projects/bioperl/
+ https://redmine.open-bio.org/projects/bioperl/
=head1 AUTHORS
2  Bio/DB/DBFetch.pm
View
@@ -60,7 +60,7 @@ Report bugs to the Bioperl bug tracking system to help us keep track
the bugs and their resolution. Bug reports can be submitted via the
web:
- http://redmine.open-bio.org/projects/bioperl/
+ https://redmine.open-bio.org/projects/bioperl/
=head1 AUTHOR - Heikki Lehvaslaiho
2  Bio/DB/EMBL.pm
View
@@ -91,7 +91,7 @@ Report bugs to the Bioperl bug tracking system to help us keep track
the bugs and their resolution. Bug reports can be submitted via the
web:
- http://redmine.open-bio.org/projects/bioperl/
+ https://redmine.open-bio.org/projects/bioperl/
=head1 AUTHOR - Heikki Lehvaslaiho
2  Bio/DB/EUtilities.pm
View
@@ -175,7 +175,7 @@ Report bugs to the Bioperl bug tracking system to
help us keep track the bugs and their resolution.
Bug reports can be submitted via the web.
- http://redmine.open-bio.org/projects/bioperl/
+ https://redmine.open-bio.org/projects/bioperl/
=head1 AUTHOR
2  Bio/DB/EntrezGene.pm
View
@@ -77,7 +77,7 @@ Report bugs to the Bioperl bug tracking system to help us keep track
the bugs and their resolution. Bug reports can be submitted via the
web:
- http://redmine.open-bio.org/projects/bioperl/
+ https://redmine.open-bio.org/projects/bioperl/
=head1 AUTHOR - Brian Osborne
2  Bio/DB/Expression.pm
View
@@ -62,7 +62,7 @@ Report bugs to the Bioperl bug tracking system to help us keep track
of the bugs and their resolution. Bug reports can be submitted via
the web:
- http://redmine.open-bio.org/projects/bioperl/
+ https://redmine.open-bio.org/projects/bioperl/
=head1 AUTHOR - Allen Day
2  Bio/DB/Expression/geo.pm
View
@@ -38,7 +38,7 @@ Report bugs to the Bioperl bug tracking system to help us keep track
of the bugs and their resolution. Bug reports can be submitted via the
web:
- http://redmine.open-bio.org/projects/bioperl/
+ https://redmine.open-bio.org/projects/bioperl/
=head1 AUTHOR
2  Bio/DB/Failover.pm
View
@@ -45,7 +45,7 @@ Report bugs to the Bioperl bug tracking system to help us keep track
the bugs and their resolution. Bug reports can be submitted via the
web:
- http://redmine.open-bio.org/projects/bioperl/
+ https://redmine.open-bio.org/projects/bioperl/
=head1 APPENDIX
2  Bio/DB/FileCache.pm
View
@@ -59,7 +59,7 @@ Report bugs to the Bioperl bug tracking system to help us keep track
the bugs and their resolution. Bug reports can be submitted via the
web:
- http://redmine.open-bio.org/projects/bioperl/
+ https://redmine.open-bio.org/projects/bioperl/
=head1 APPENDIX
2  Bio/DB/Flat.pm
View
@@ -65,7 +65,7 @@ Report bugs to the Bioperl bug tracking system to help us keep track
the bugs and their resolution. Bug reports can be submitted via the
web:
- http://redmine.open-bio.org/projects/bioperl/
+ https://redmine.open-bio.org/projects/bioperl/
=head1 AUTHOR - Lincoln Stein
2  Bio/DB/Flat/BDB.pm
View
@@ -59,7 +59,7 @@ Report bugs to the Bioperl bug tracking system to help us keep track
the bugs and their resolution. Bug reports can be submitted via
email or the web:
- http://redmine.open-bio.org/projects/bioperl/
+ https://redmine.open-bio.org/projects/bioperl/
=head1 AUTHOR - Lincoln Stein
2  Bio/DB/Flat/BDB/embl.pm
View
@@ -52,7 +52,7 @@ Report bugs to the Bioperl bug tracking system to help us keep track
the bugs and their resolution. Bug reports can be submitted via the
web:
- http://redmine.open-bio.org/projects/bioperl/
+ https://redmine.open-bio.org/projects/bioperl/
=head1 AUTHOR - Lincoln Stein