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final doc changes to README
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svn path=/bioperl-live/branches/branch-07/; revision=2174
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birney committed Mar 5, 2001
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31 changes: 1 addition & 30 deletions README
@@ -1,5 +1,5 @@
This is the README file for the Bioperl central distribution, This is the README file for the Bioperl central distribution,
version 0.06.1 version 0.7.0


# $Id$ # $Id$


Expand Down Expand Up @@ -163,35 +163,6 @@ extension for the bp_sw module is held and execute these commands:
This should install the compiled extension. The Bio::Tools::pSW module This should install the compiled extension. The Bio::Tools::pSW module
will work cleanly now. will work cleanly now.


INSTALLING TO USE Readseq

Edit the top of Bio::Parse.pm to show the path to readseq, ie
edit


## Uncomment the $OK stuff (it is mentioned twice to
## shut strict up. Set $READSEQ_PATH to the full path
## to the readseq executable.

## $OK = "Y";
## $OK = "Y";
my $READSEQ_PATH=undef;

to something like

## Uncomment the $OK stuff (it is mentioned twice to
## shut strict up. Set $READSEQ_PATH to the full path
## to the readseq executable.

$OK = "Y";
$OK = "Y";
my $READSEQ_PATH='/usr/local/bin/readseq';


The use of readseq like this has been officially 'deprecated', waiting
for a better system in 0.06 which will be much more transparent as
to what is going on.



INSTALLING BIOPERL IN A PERSONAL OR PRIVATE MODULE AREA INSTALLING BIOPERL IN A PERSONAL OR PRIVATE MODULE AREA


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