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Commits on Sep 25, 2016
  1. bump to release

    cjfields committed Sep 25, 2016
Commits on Sep 23, 2016
  1. Merge pull request #202 from RoyChaudhuri/master

    Fix for bug #201, print ID line if custom ID sub defined
    cjfields committed on GitHub Sep 23, 2016
Commits on Sep 20, 2016
  1. add some changes

    cjfields committed Sep 20, 2016
  2. bump version

    cjfields committed Sep 20, 2016
Commits on Sep 16, 2016
Commits on Sep 13, 2016
  1. logic fix for #182

    cjfields committed Sep 13, 2016
Commits on Sep 11, 2016
Commits on Sep 8, 2016
Commits on Sep 7, 2016
Commits on Sep 3, 2016
  1. Merge pull request #194 from dk/master

    address another case in #190
    cjfields committed on GitHub Sep 3, 2016
Commits on Aug 29, 2016
  1. Update number of tests to run for additional tests

    lairdm committed with Dmitry Karasik Aug 14, 2016
  2. - is_ter_codon was incorrectly returning ambiguous codons as stop cod…

    …ons (ie. NNN was being returned true), any failure in the list of unambiguous codons should return false, the opposite was occuring
    
    - U was not being remapped to T, it's needed for UAG and such
    - Added tests for better coverage of corner cases
    lairdm committed with Dmitry Karasik Aug 10, 2016
Commits on Aug 23, 2016
  1. Merge pull request #193 from dk/master

    refs #190: understand unquoted multiline FT entries
    cjfields committed on GitHub Aug 23, 2016
  2. Merge pull request #192 from lairdm/master

    Ambiguous codons being returned as stop codons
    cjfields committed on GitHub Aug 23, 2016
Commits on Aug 14, 2016
Commits on Aug 12, 2016
  1. refs #190: understand unquoted multiline FT entries

    Dmitry Karasik committed Aug 12, 2016
Commits on Aug 10, 2016
  1. - is_ter_codon was incorrectly returning ambiguous codons as stop cod…

    …ons (ie. NNN was being returned true), any failure in the list of unambiguous codons should return false, the opposite was occuring
    
    - U was not being remapped to T, it's needed for UAG and such
    - Added tests for better coverage of corner cases
    lairdm committed Aug 10, 2016
Commits on Aug 3, 2016
  1. Merge pull request #191 from bioperl/fix-spellings

    Fix spellings
    bosborne committed on GitHub Aug 3, 2016
  2. Fix spellings

    bosborne committed Aug 3, 2016
Commits on Aug 2, 2016
  1. possible fix for #187

    cjfields committed Aug 2, 2016
Commits on Aug 1, 2016
  1. Merge pull request #188 from RoyChaudhuri/master

    SeqIO documentation update to clarify that piped commands should be o…
    cjfields committed on GitHub Aug 1, 2016
Commits on Jul 20, 2016
  1. Merge pull request #186 from bioperl/docker-install

    Adds instructions for installing BioPerl as a Docker image.
    cjfields committed on GitHub Jul 20, 2016
Commits on Jul 18, 2016
  1. Adds instructions for installing BioPerl as a Docker image.

    This required some minor restructuring to fit it into the current
    documentation, mainly decrementing the level of the headings for
    installing locally.
    hlapp committed Jul 18, 2016
  2. Merge pull request #185 from elucify/ncbi-https

    Updated http URLs to https
    cjfields committed on GitHub Jul 18, 2016
  3. Merge pull request #181 from bioperl/limit-dockerhub-trigger

    Limit Docker Hub trigger
    cjfields committed on GitHub Jul 18, 2016
  4. missed one url

    elucify committed Jul 18, 2016
  5. Updated http URLs to https

    elucify committed Jul 18, 2016
Commits on Jul 16, 2016
  1. bump RC

    cjfields committed Jul 16, 2016
  2. update Changes (first of a few)

    cjfields committed Jul 16, 2016
Commits on Jul 12, 2016