(along with tests), fixes #3153.
length, fixes #2891 * note that the raw FASTQ string is NOT stored in the instances
… of the whole distribution, or just the set of files and dirs specified at the command line
…ugh completely untested, refs #2247
This reverts commit d74316b. and also fixes #3189
…accumulation of coverage counts when multiple feature types requested
for Bio::DB::GFF and the gff loading scripts, added a warning message if the user is loading gff3. for Bio::FeatureIO::gff, it's test and the knownGene.gff3 sample data, there is a fix to NOT unescape URI codes in the Target values, per the GFF3 spec.
…//www.1000genomes.org/wiki/analysis/vcf4.0 with modification according to definition (spaces -> \t).