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fixing tests

svn path=/bioperl-microarray/trunk/; revision=11837
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1 parent fb81a04 commit 91363fdacce346fa775104ad957cdf959e896dd9 allenday committed Sep 8, 2003
Showing with 45 additions and 3 deletions.
  1. +1 −1 Bio/Expression/MicroarrayIO/affymetrix.pm
  2. +42 −0 MANIFEST
  3. +2 −2 t/affymetrix.t
@@ -211,7 +211,7 @@ sub load_array {
# -file => $self->templatefile,
);
- open(my $t,$self->templatefile) or $self->throw("Couldn't open templatefile(): $!");
+ open(my $t,$self->templatefile) or $self->throw("Couldn't open templatefile(): ".$self->templatefile.": $!");
while(<$t>){
$array->load_data($_);
}
View
@@ -1,18 +1,60 @@
Bio/Expression/Microarray/Affymetrix/Array.pm
+Bio/Expression/Microarray/Affymetrix/ArrayDesign.pm
+Bio/Expression/Microarray/Affymetrix/CelArray.pm
+Bio/Expression/Microarray/Affymetrix/Changes.txt
Bio/Expression/Microarray/Affymetrix/Data.pm
Bio/Expression/Microarray/Affymetrix/Feature.pm
+Bio/Expression/Microarray/Affymetrix/Mas50Data.pm
+Bio/Expression/Microarray/Affymetrix/Mas50TxtArray.pm
+Bio/Expression/Microarray/Affymetrix/dChipArray.pm
+Bio/Expression/Microarray/Affymetrix/dChipXLS.pm
Bio/Expression/Microarray/ArrayI.pm
Bio/Expression/Microarray/DataI.pm
Bio/Expression/Microarray/FeatureI.pm
Bio/Expression/MicroarrayI.pm
Bio/Expression/MicroarrayIO.pm
Bio/Expression/MicroarrayIO/affymetrix.pm
Bio/Expression/MicroarrayIO/dchipxls.pm
+Bio/Expression/MicroarrayIO/mas50txt.pm
MANIFEST
Makefile.PL
+eg/1.CEL
+eg/133a.cdf
+eg/133a.cel
+eg/133a.featuresets
+eg/133a.qcfeaturesets
+eg/133a.txt
+eg/133a.xls
+eg/133b.cdf
+eg/133b.cel
+eg/133b.featuresets
+eg/133b.qcfeaturesets
+eg/133b.txt
+eg/133b.xls
+eg/3.CEL
+eg/95av1.cdf
+eg/95av1.featuresets
+eg/95av1.qcfeaturesets
+eg/95av2.cdf
+eg/95av2.cel
+eg/95av2.featuresets
+eg/95av2.qcfeaturesets
+eg/95av2_combo.cel
+eg/GenePix_Pro_3.0.6.89.gpr
+eg/all.featuresets
+eg/chado_cel.pl
+eg/chado_cel_extract.pl
+eg/chado_dbi.pl
+eg/chado_stable.pl
+eg/chado_xls.pl
eg/u133a.not.in.cdf.txt
eg/u133b.not.in.cdf.txt
eg/u95.not.in.cdf.txt
+eg/u95av2.not.in.cdf.txt
+t/133a.t
+t/133b.t
t/affy_u133a_cel.t
t/affy_u133b_cel.t
t/affy_u95av2_cel.t
+t/affy_u95av2_cel_stream.t
+t/affymetrix.t
View
@@ -42,8 +42,8 @@ use Bio::Expression::MicroarrayIO;
ok 5;
my $affx = Bio::Expression::MicroarrayIO->new(
- -file => './1.CEL',
- -template => './1.CDF',
+ -file => './eg/133a.cel',
+ -template => './eg/133a.cdf',
-format => 'affymetrix',
);
ok 6;

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