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svn path=/bioperl-microarray/trunk/; revision=11827
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1 parent 293f11b commit ac5165a520c67d75b90d1554931f034dd6119279 crsto committed Jun 17, 2003
@@ -144,7 +144,7 @@ Returns : a Bio::Expression::FeatureSet object
=cut
-sub qcfeaturegroup {
+sub qc_featuregroup {
my($self,$arg) = @_;
return $self->{qcfeaturegroup}->{$arg} if $self->{qcfeaturegroup}->{$arg};
$self->{qcfeaturegroup}->{$arg} = Bio::Expression::FeatureSet->new()
@@ -0,0 +1,38 @@
+In order to follow MAGE naming conventions and also clean up/clarify some
+of the Bioperl-Microarray modules,
+
+the following changes were made:
+Modules are now all documented!
+
+Changes to Bio::Expression::Microarray::MicroarrayIO
+----------------------------------------------------
+Module naming (affymetrix.pm, dchipxls.pm mas50txt.pm) and their
+interfaces remain the same.
+However the internals have been modified to reflect changes in the Affy
+Array module changes that are
+
+detailed below.
+
+
+Changes to Bio::Expression::Microarray::Affymetrix:: modules
+------------------------------------------------------------
+
+Array.pm renamed to ArrayDesign.pm
+
+Data.pm renamed to CelArray.pm
+
+Feature.pm unchanged
+
+Mas50Data.pm renamed Mas50TxtArray.pm
+
+dChipXLS.pm renamed dChipArray.pm
+
+IN ALL above modules where appropriate:
+Method Changes
+ featureset renamed featuregroup
+ each_featureset renamed each_featuregroup
+ qc_featureset renamed qc_featuregroup
+ each_qcfeaturegroup renamed each_qcfeaturegroup
+
+
+Send any comments or questions to allenday@ucla.edu and crsto@ucla.edu.

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