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remove Makefile

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commit e93dfa742cef6b5cd1e7588a252bdd5ccc808842 1 parent ee0fc18
Chris Fields authored
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937 Makefile
@@ -1,937 +0,0 @@
-# This Makefile is for the Bio extension to perl.
-#
-# It was generated automatically by MakeMaker version
-# 6.56 (Revision: 65600) from the contents of
-# Makefile.PL. Don't edit this file, edit Makefile.PL instead.
-#
-# ANY CHANGES MADE HERE WILL BE LOST!
-#
-# MakeMaker ARGV: ()
-#
-
-# MakeMaker Parameters:
-
-# ABSTRACT => q[Bioperl Toolkit - Addendum for microarray data]
-# AUTHOR => q[Bioperl Team (bioperl-l@bioperl.org)]
-# BUILD_REQUIRES => { }
-# DIR => []
-# DISTNAME => q[bioperl-microarray]
-# NAME => q[Bio]
-# PREREQ_PM => { }
-# VERSION => q[0.1]
-# dist => { DIST_DEFAULT=>q[all tardist], COMPRESS=>q[gzip -9f], SUFFIX=>q[.gz] }
-# realclean => { FILES=>q[] }
-
-# --- MakeMaker post_initialize section:
-
-
-# --- MakeMaker const_config section:
-
-# These definitions are from config.sh (via /opt/perl512/lib/5.12.1/darwin-thread-multi-2level/Config.pm).
-# They may have been overridden via Makefile.PL or on the command line.
-AR = ar
-CC = cc
-CCCDLFLAGS =
-CCDLFLAGS =
-DLEXT = bundle
-DLSRC = dl_dlopen.xs
-EXE_EXT =
-FULL_AR = /usr/bin/ar
-LD = env MACOSX_DEPLOYMENT_TARGET=10.3 cc
-LDDLFLAGS = -bundle -undefined dynamic_lookup -L/usr/local/lib -L/opt/local/lib -fstack-protector
-LDFLAGS = -fstack-protector -L/usr/local/lib -L/opt/local/lib
-LIBC = /usr/lib/libc.dylib
-LIB_EXT = .a
-OBJ_EXT = .o
-OSNAME = darwin
-OSVERS = 10.3.0
-RANLIB = ranlib
-SITELIBEXP = /opt/perl512/lib/site_perl/5.12.1
-SITEARCHEXP = /opt/perl512/lib/site_perl/5.12.1/darwin-thread-multi-2level
-SO = dylib
-VENDORARCHEXP =
-VENDORLIBEXP =
-
-
-# --- MakeMaker constants section:
-AR_STATIC_ARGS = cr
-DIRFILESEP = /
-DFSEP = $(DIRFILESEP)
-NAME = Bio
-NAME_SYM = Bio
-VERSION = 0.1
-VERSION_MACRO = VERSION
-VERSION_SYM = 0_1
-DEFINE_VERSION = -D$(VERSION_MACRO)=\"$(VERSION)\"
-XS_VERSION = 0.1
-XS_VERSION_MACRO = XS_VERSION
-XS_DEFINE_VERSION = -D$(XS_VERSION_MACRO)=\"$(XS_VERSION)\"
-INST_ARCHLIB = blib/arch
-INST_SCRIPT = blib/script
-INST_BIN = blib/bin
-INST_LIB = blib/lib
-INST_MAN1DIR = blib/man1
-INST_MAN3DIR = blib/man3
-MAN1EXT = 1
-MAN3EXT = 3
-INSTALLDIRS = site
-DESTDIR =
-PREFIX = $(SITEPREFIX)
-PERLPREFIX = /opt/perl512
-SITEPREFIX = /opt/perl512
-VENDORPREFIX =
-INSTALLPRIVLIB = /opt/perl512/lib/5.12.1
-DESTINSTALLPRIVLIB = $(DESTDIR)$(INSTALLPRIVLIB)
-INSTALLSITELIB = /opt/perl512/lib/site_perl/5.12.1
-DESTINSTALLSITELIB = $(DESTDIR)$(INSTALLSITELIB)
-INSTALLVENDORLIB =
-DESTINSTALLVENDORLIB = $(DESTDIR)$(INSTALLVENDORLIB)
-INSTALLARCHLIB = /opt/perl512/lib/5.12.1/darwin-thread-multi-2level
-DESTINSTALLARCHLIB = $(DESTDIR)$(INSTALLARCHLIB)
-INSTALLSITEARCH = /opt/perl512/lib/site_perl/5.12.1/darwin-thread-multi-2level
-DESTINSTALLSITEARCH = $(DESTDIR)$(INSTALLSITEARCH)
-INSTALLVENDORARCH =
-DESTINSTALLVENDORARCH = $(DESTDIR)$(INSTALLVENDORARCH)
-INSTALLBIN = /opt/perl512/bin
-DESTINSTALLBIN = $(DESTDIR)$(INSTALLBIN)
-INSTALLSITEBIN = /opt/perl512/bin
-DESTINSTALLSITEBIN = $(DESTDIR)$(INSTALLSITEBIN)
-INSTALLVENDORBIN =
-DESTINSTALLVENDORBIN = $(DESTDIR)$(INSTALLVENDORBIN)
-INSTALLSCRIPT = /opt/perl512/bin
-DESTINSTALLSCRIPT = $(DESTDIR)$(INSTALLSCRIPT)
-INSTALLSITESCRIPT = /opt/perl512/bin
-DESTINSTALLSITESCRIPT = $(DESTDIR)$(INSTALLSITESCRIPT)
-INSTALLVENDORSCRIPT =
-DESTINSTALLVENDORSCRIPT = $(DESTDIR)$(INSTALLVENDORSCRIPT)
-INSTALLMAN1DIR = /opt/perl512/man/man1
-DESTINSTALLMAN1DIR = $(DESTDIR)$(INSTALLMAN1DIR)
-INSTALLSITEMAN1DIR = /opt/perl512/man/man1
-DESTINSTALLSITEMAN1DIR = $(DESTDIR)$(INSTALLSITEMAN1DIR)
-INSTALLVENDORMAN1DIR =
-DESTINSTALLVENDORMAN1DIR = $(DESTDIR)$(INSTALLVENDORMAN1DIR)
-INSTALLMAN3DIR = /opt/perl512/man/man3
-DESTINSTALLMAN3DIR = $(DESTDIR)$(INSTALLMAN3DIR)
-INSTALLSITEMAN3DIR = /opt/perl512/man/man3
-DESTINSTALLSITEMAN3DIR = $(DESTDIR)$(INSTALLSITEMAN3DIR)
-INSTALLVENDORMAN3DIR =
-DESTINSTALLVENDORMAN3DIR = $(DESTDIR)$(INSTALLVENDORMAN3DIR)
-PERL_LIB = /opt/perl512/lib/5.12.1
-PERL_ARCHLIB = /opt/perl512/lib/5.12.1/darwin-thread-multi-2level
-LIBPERL_A = libperl.a
-FIRST_MAKEFILE = Makefile
-MAKEFILE_OLD = Makefile.old
-MAKE_APERL_FILE = Makefile.aperl
-PERLMAINCC = $(CC)
-PERL_INC = /opt/perl512/lib/5.12.1/darwin-thread-multi-2level/CORE
-PERL = /opt/perl512/bin/perl
-FULLPERL = /opt/perl512/bin/perl
-ABSPERL = $(PERL)
-PERLRUN = $(PERL)
-FULLPERLRUN = $(FULLPERL)
-ABSPERLRUN = $(ABSPERL)
-PERLRUNINST = $(PERLRUN) "-I$(INST_ARCHLIB)" "-I$(INST_LIB)"
-FULLPERLRUNINST = $(FULLPERLRUN) "-I$(INST_ARCHLIB)" "-I$(INST_LIB)"
-ABSPERLRUNINST = $(ABSPERLRUN) "-I$(INST_ARCHLIB)" "-I$(INST_LIB)"
-PERL_CORE = 0
-PERM_DIR = 755
-PERM_RW = 644
-PERM_RWX = 755
-
-MAKEMAKER = /opt/perl512/lib/5.12.1/ExtUtils/MakeMaker.pm
-MM_VERSION = 6.56
-MM_REVISION = 65600
-
-# FULLEXT = Pathname for extension directory (eg Foo/Bar/Oracle).
-# BASEEXT = Basename part of FULLEXT. May be just equal FULLEXT. (eg Oracle)
-# PARENT_NAME = NAME without BASEEXT and no trailing :: (eg Foo::Bar)
-# DLBASE = Basename part of dynamic library. May be just equal BASEEXT.
-MAKE = make
-FULLEXT = Bio
-BASEEXT = Bio
-PARENT_NAME =
-DLBASE = $(BASEEXT)
-VERSION_FROM =
-OBJECT =
-LDFROM = $(OBJECT)
-LINKTYPE = dynamic
-BOOTDEP =
-
-# Handy lists of source code files:
-XS_FILES =
-C_FILES =
-O_FILES =
-H_FILES =
-MAN1PODS =
-MAN3PODS = Bio/Expression/Microarray/Affymetrix/Array.pm \
- Bio/Expression/Microarray/Affymetrix/ArrayDesign.pm \
- Bio/Expression/Microarray/Affymetrix/CelArray.pm \
- Bio/Expression/Microarray/Affymetrix/Data.pm \
- Bio/Expression/Microarray/Affymetrix/Feature.pm \
- Bio/Expression/Microarray/Affymetrix/Mas50TxtArray.pm \
- Bio/Expression/Microarray/Affymetrix/dChipArray.pm \
- Bio/Expression/Microarray/Affymetrix/dChipXLS.pm \
- Bio/Expression/Microarray/FeatureI.pm \
- Bio/Expression/MicroarrayIO.pm \
- Bio/Expression/MicroarrayIO/affymetrix.pm \
- Bio/Expression/MicroarrayIO/dchipxls.pm \
- Bio/Expression/MicroarrayIO/mas50txt.pm
-
-# Where is the Config information that we are using/depend on
-CONFIGDEP = $(PERL_ARCHLIB)$(DFSEP)Config.pm $(PERL_INC)$(DFSEP)config.h
-
-# Where to build things
-INST_LIBDIR = $(INST_LIB)
-INST_ARCHLIBDIR = $(INST_ARCHLIB)
-
-INST_AUTODIR = $(INST_LIB)/auto/$(FULLEXT)
-INST_ARCHAUTODIR = $(INST_ARCHLIB)/auto/$(FULLEXT)
-
-INST_STATIC =
-INST_DYNAMIC =
-INST_BOOT =
-
-# Extra linker info
-EXPORT_LIST =
-PERL_ARCHIVE =
-PERL_ARCHIVE_AFTER =
-
-
-TO_INST_PM = Bio/Expression/Microarray/Affymetrix/Array.pm \
- Bio/Expression/Microarray/Affymetrix/ArrayDesign.pm \
- Bio/Expression/Microarray/Affymetrix/CelArray.pm \
- Bio/Expression/Microarray/Affymetrix/Changes.txt \
- Bio/Expression/Microarray/Affymetrix/Data.pm \
- Bio/Expression/Microarray/Affymetrix/Feature.pm \
- Bio/Expression/Microarray/Affymetrix/Mas50Data.pm \
- Bio/Expression/Microarray/Affymetrix/Mas50TxtArray.pm \
- Bio/Expression/Microarray/Affymetrix/dChipArray.pm \
- Bio/Expression/Microarray/Affymetrix/dChipXLS.pm \
- Bio/Expression/Microarray/ArrayI.pm \
- Bio/Expression/Microarray/DataI.pm \
- Bio/Expression/Microarray/FeatureI.pm \
- Bio/Expression/MicroarrayI.pm \
- Bio/Expression/MicroarrayIO.pm \
- Bio/Expression/MicroarrayIO/affymetrix.pm \
- Bio/Expression/MicroarrayIO/dchipxls.pm \
- Bio/Expression/MicroarrayIO/mas50txt.pm
-
-PM_TO_BLIB = Bio/Expression/MicroarrayI.pm \
- $(INST_LIB)/Bio/Expression/MicroarrayI.pm \
- Bio/Expression/Microarray/Affymetrix/Mas50Data.pm \
- $(INST_LIB)/Bio/Expression/Microarray/Affymetrix/Mas50Data.pm \
- Bio/Expression/MicroarrayIO/dchipxls.pm \
- $(INST_LIB)/Bio/Expression/MicroarrayIO/dchipxls.pm \
- Bio/Expression/Microarray/Affymetrix/dChipXLS.pm \
- $(INST_LIB)/Bio/Expression/Microarray/Affymetrix/dChipXLS.pm \
- Bio/Expression/MicroarrayIO/mas50txt.pm \
- $(INST_LIB)/Bio/Expression/MicroarrayIO/mas50txt.pm \
- Bio/Expression/Microarray/Affymetrix/dChipArray.pm \
- $(INST_LIB)/Bio/Expression/Microarray/Affymetrix/dChipArray.pm \
- Bio/Expression/MicroarrayIO/affymetrix.pm \
- $(INST_LIB)/Bio/Expression/MicroarrayIO/affymetrix.pm \
- Bio/Expression/Microarray/Affymetrix/Array.pm \
- $(INST_LIB)/Bio/Expression/Microarray/Affymetrix/Array.pm \
- Bio/Expression/Microarray/Affymetrix/CelArray.pm \
- $(INST_LIB)/Bio/Expression/Microarray/Affymetrix/CelArray.pm \
- Bio/Expression/Microarray/FeatureI.pm \
- $(INST_LIB)/Bio/Expression/Microarray/FeatureI.pm \
- Bio/Expression/Microarray/Affymetrix/Data.pm \
- $(INST_LIB)/Bio/Expression/Microarray/Affymetrix/Data.pm \
- Bio/Expression/Microarray/DataI.pm \
- $(INST_LIB)/Bio/Expression/Microarray/DataI.pm \
- Bio/Expression/Microarray/Affymetrix/Feature.pm \
- $(INST_LIB)/Bio/Expression/Microarray/Affymetrix/Feature.pm \
- Bio/Expression/Microarray/Affymetrix/Changes.txt \
- $(INST_LIB)/Bio/Expression/Microarray/Affymetrix/Changes.txt \
- Bio/Expression/Microarray/ArrayI.pm \
- $(INST_LIB)/Bio/Expression/Microarray/ArrayI.pm \
- Bio/Expression/Microarray/Affymetrix/ArrayDesign.pm \
- $(INST_LIB)/Bio/Expression/Microarray/Affymetrix/ArrayDesign.pm \
- Bio/Expression/MicroarrayIO.pm \
- $(INST_LIB)/Bio/Expression/MicroarrayIO.pm \
- Bio/Expression/Microarray/Affymetrix/Mas50TxtArray.pm \
- $(INST_LIB)/Bio/Expression/Microarray/Affymetrix/Mas50TxtArray.pm
-
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-# --- MakeMaker platform_constants section:
-MM_Unix_VERSION = 6.56
-PERL_MALLOC_DEF = -DPERL_EXTMALLOC_DEF -Dmalloc=Perl_malloc -Dfree=Perl_mfree -Drealloc=Perl_realloc -Dcalloc=Perl_calloc
-
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-# --- MakeMaker tool_autosplit section:
-# Usage: $(AUTOSPLITFILE) FileToSplit AutoDirToSplitInto
-AUTOSPLITFILE = $(ABSPERLRUN) -e 'use AutoSplit; autosplit($$ARGV[0], $$ARGV[1], 0, 1, 1)' --
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-# --- MakeMaker tools_other section:
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-RM_RF = rm -rf
-TEST_F = test -f
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-UMASK_NULL = umask 0
-DEV_NULL = > /dev/null 2>&1
-MKPATH = $(ABSPERLRUN) -MExtUtils::Command -e 'mkpath' --
-EQUALIZE_TIMESTAMP = $(ABSPERLRUN) -MExtUtils::Command -e 'eqtime' --
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-TRUE = true
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-ECHO_N = echo -n
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-DOC_INSTALL = $(ABSPERLRUN) -MExtUtils::Command::MM -e 'perllocal_install' --
-UNINSTALL = $(ABSPERLRUN) -MExtUtils::Command::MM -e 'uninstall' --
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-# --- MakeMaker makemakerdflt section:
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-# --- MakeMaker dist section:
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-TARFLAGS = cvf
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-SUFFIX = .gz
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-PREOP = $(NOECHO) $(NOOP)
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-CI = ci -u
-RCS_LABEL = rcs -Nv$(VERSION_SYM): -q
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- Bio/Expression/MicroarrayIO/dchipxls.pm \
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- Bio/Expression/Microarray/FeatureI.pm $(INST_MAN3DIR)/Bio::Expression::Microarray::FeatureI.$(MAN3EXT) \
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- $(NOECHO) $(ECHO) 'distribution_type: module' >> META_new.yml
- $(NOECHO) $(ECHO) 'configure_requires:' >> META_new.yml
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- $(NOECHO) $(ECHO) ' ExtUtils::MakeMaker: 0' >> META_new.yml
- $(NOECHO) $(ECHO) 'requires: {}' >> META_new.yml
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-# --- MakeMaker signature section:
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-# --- MakeMaker dist_test section:
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- cd $(DISTVNAME) && $(ABSPERLRUN) Makefile.PL
- cd $(DISTVNAME) && $(MAKE) $(PASTHRU)
- cd $(DISTVNAME) && $(MAKE) test $(PASTHRU)
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-# --- MakeMaker dist_ci section:
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- -e "@all = keys %{ maniread() };" \
- -e "print(qq{Executing $(CI) @all\n}); system(qq{$(CI) @all});" \
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- $(NOECHO) cd $(DISTVNAME) && $(ABSPERLRUN) -MExtUtils::Manifest=maniadd -e 'eval { maniadd({q{META.yml} => q{Module meta-data (added by MakeMaker)}}) } ' \
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-# --- MakeMaker distsignature section:
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- $(NOECHO) cd $(DISTVNAME) && $(TOUCH) SIGNATURE
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-# --- MakeMaker install section:
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-install :: pure_install doc_install
- $(NOECHO) $(NOOP)
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-install_perl :: pure_perl_install doc_perl_install
- $(NOECHO) $(NOOP)
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-install_site :: pure_site_install doc_site_install
- $(NOECHO) $(NOOP)
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-install_vendor :: pure_vendor_install doc_vendor_install
- $(NOECHO) $(NOOP)
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-pure_install :: pure_$(INSTALLDIRS)_install
- $(NOECHO) $(NOOP)
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- $(NOECHO) $(NOOP)
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- $(NOECHO) $(ECHO) INSTALLDIRS not defined, defaulting to INSTALLDIRS=site
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- $(NOECHO) $(ECHO) INSTALLDIRS not defined, defaulting to INSTALLDIRS=site
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- >> $(DESTINSTALLARCHLIB)/perllocal.pod
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- $(NOECHO) $(ECHO) Appending installation info to $(DESTINSTALLARCHLIB)/perllocal.pod
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- "installed into" "$(INSTALLSITELIB)" \
- LINKTYPE "$(LINKTYPE)" \
- VERSION "$(VERSION)" \
- EXE_FILES "$(EXE_FILES)" \
- >> $(DESTINSTALLARCHLIB)/perllocal.pod
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-doc_vendor_install :: all
- $(NOECHO) $(ECHO) Appending installation info to $(DESTINSTALLARCHLIB)/perllocal.pod
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- "Module" "$(NAME)" \
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- VERSION "$(VERSION)" \
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- >> $(DESTINSTALLARCHLIB)/perllocal.pod
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- $(NOECHO) $(NOOP)
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-# --- MakeMaker force section:
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- $(NOECHO) $(NOOP)
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-# --- MakeMaker perldepend section:
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-# --- MakeMaker selfdocument section:
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-# --- MakeMaker postamble section:
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-affy_u133a_stream \
-affy_u133a_txt \
-affy_u95av2_cel \
-affy_u95av2_cel_stream \
-'
-test_affy_u133a_cel :: pure_all
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- PERL_DL_NONLAZY=1 $(FULLPERL) -I$(INST_ARCHLIB) -I$(INST_LIB) -I$(PERL_ARCHLIB) -I$(PERL_LIB) -e 'use Test::Harness qw(&runtests $$verbose); $$verbose=$(TEST_VERBOSE); runtests @ARGV;' t/affy_u133a_stream.t
-test_affy_u133a_txt :: pure_all
- PERL_DL_NONLAZY=1 $(FULLPERL) -I$(INST_ARCHLIB) -I$(INST_LIB) -I$(PERL_ARCHLIB) -I$(PERL_LIB) -e 'use Test::Harness qw(&runtests $$verbose); $$verbose=$(TEST_VERBOSE); runtests @ARGV;' t/affy_u133a_txt.t
-test_affy_u95av2_cel :: pure_all
- PERL_DL_NONLAZY=1 $(FULLPERL) -I$(INST_ARCHLIB) -I$(INST_LIB) -I$(PERL_ARCHLIB) -I$(PERL_LIB) -e 'use Test::Harness qw(&runtests $$verbose); $$verbose=$(TEST_VERBOSE); runtests @ARGV;' t/affy_u95av2_cel.t
-test_affy_u95av2_cel_stream :: pure_all
- PERL_DL_NONLAZY=1 $(FULLPERL) -I$(INST_ARCHLIB) -I$(INST_LIB) -I$(PERL_ARCHLIB) -I$(PERL_LIB) -e 'use Test::Harness qw(&runtests $$verbose); $$verbose=$(TEST_VERBOSE); runtests @ARGV;' t/affy_u95av2_cel_stream.t
-
-
-
-# End.
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